Tue, 23 Dec 2014

Package SpatialVx updated to version 0.2-2 with previous version 0.2-1 dated 2014-05-13

Title: Spatial Forecast Verification
Description: Functions to perform spatial forecast verification
Author: Eric Gilleland
Maintainer: Eric Gilleland

Diff between SpatialVx versions 0.2-1 dated 2014-05-13 and 0.2-2 dated 2014-12-23

 DESCRIPTION      |    6 +++---
 MD5              |    9 ++++++---
 R/Features.R     |    4 ++--
 R/SigFuns.R      |    3 +++
 R/imomenter.R    |only
 man/Mij.Rd       |only
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 7 files changed, 14 insertions(+), 8 deletions(-)

More information about SpatialVx at CRAN
Permanent link

Package SharpeR updated to version 0.1501 with previous version 0.1401 dated 2014-01-03

Title: Statistical Significance of the Sharpe Ratio
Description: A collection of tools for analyzing significance of trading strategies, based on the Sharpe ratio and overfit of the same.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav

Diff between SharpeR versions 0.1401 dated 2014-01-03 and 0.1501 dated 2014-12-23

 SharpeR-0.1401/SharpeR/ChangeLog                       |only
 SharpeR-0.1501/SharpeR/DESCRIPTION                     |   27 -
 SharpeR-0.1501/SharpeR/MD5                             |   97 ++--
 SharpeR-0.1501/SharpeR/NAMESPACE                       |   54 +-
 SharpeR-0.1501/SharpeR/R/SharpeR.r                     |    9 
 SharpeR-0.1501/SharpeR/R/distributions.r               |   22 -
 SharpeR-0.1501/SharpeR/R/sr.r                          |    8 
 SharpeR-0.1501/SharpeR/R/utils.r                       |   13 
 SharpeR-0.1501/SharpeR/README.md                       |    4 
 SharpeR-0.1501/SharpeR/build/vignette.rds              |binary
 SharpeR-0.1501/SharpeR/inst/CITATION                   |    8 
 SharpeR-0.1501/SharpeR/inst/doc/SharpeR.R              |  123 ++----
 SharpeR-0.1501/SharpeR/inst/doc/SharpeR.Rnw            |    2 
 SharpeR-0.1501/SharpeR/inst/doc/SharpeR.pdf            |binary
 SharpeR-0.1501/SharpeR/inst/doc/SharpeRatio.R          |  148 +++----
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 SharpeR-0.1501/SharpeR/inst/doc/SharpeRatio.pdf        |binary
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 SharpeR-0.1501/SharpeR/man/del_sropt.Rd                |  143 +++----
 SharpeR-0.1501/SharpeR/man/dsr.Rd                      |  177 ++++----
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 SharpeR-0.1501/SharpeR/man/ism_vcov.Rd                 |   98 ++--
 SharpeR-0.1501/SharpeR/man/pco_sropt.Rd                |  114 ++---
 SharpeR-0.1501/SharpeR/man/plambdap.Rd                 |  121 ++---
 SharpeR-0.1501/SharpeR/man/power.sr_test.Rd            |  131 +++---
 SharpeR-0.1501/SharpeR/man/power.sropt_test.Rd         |   93 ++--
 SharpeR-0.1501/SharpeR/man/print.Rd                    |   46 +-
 SharpeR-0.1501/SharpeR/man/reannualize.Rd              |   68 +--
 SharpeR-0.1501/SharpeR/man/se.Rd                       |  100 ++--
 SharpeR-0.1501/SharpeR/man/sm_vcov.Rd                  |   73 +--
 SharpeR-0.1501/SharpeR/man/sr.Rd                       |  108 ++---
 SharpeR-0.1501/SharpeR/man/sr_equality_test.Rd         |  167 +++-----
 SharpeR-0.1501/SharpeR/man/sr_test.Rd                  |  163 +++-----
 SharpeR-0.1501/SharpeR/man/sr_vcov.Rd                  |  107 ++---
 SharpeR-0.1501/SharpeR/man/sropt.Rd                    |  113 ++---
 SharpeR-0.1501/SharpeR/man/sropt_test.Rd               |  115 ++---
 SharpeR-0.1501/SharpeR/vignettes/SharpeR.Rnw           |    2 
 SharpeR-0.1501/SharpeR/vignettes/SharpeR.bib           |    2 
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Permanent link

Package sensR updated to version 1.4-4 with previous version 1.4-0 dated 2014-05-08

Title: Thurstonian Models for Sensory Discrimination
Description: Provides methods for sensory discrimination methods; duotrio, tetrad, triangle, 2-AFC, 3-AFC, A-not A, same-different, 2-AC and degree-of-difference. This enables the calculation of d-primes, standard errors of d-primes, sample size and power computations, and comparisons of different d-primes. Methods for profile likelihood confidence intervals and plotting are included.
Author: Rune Haubo Bojesen Christensen [aut, cre], Per Bruun Brockhoff [aut]
Maintainer: Rune Haubo Bojesen Christensen

Diff between sensR versions 1.4-0 dated 2014-05-08 and 1.4-4 dated 2014-12-23

 DESCRIPTION                       |   15 ++++---
 MD5                               |   30 ++++++++-------
 NEWS                              |   19 +++++++++
 R/ROC.R                           |   13 ++++--
 R/betaBin.R                       |   22 +++++------
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 build/vignette.rds                |binary
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 man/AUC.Rd                        |    7 ++-
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 18 files changed, 184 insertions(+), 84 deletions(-)

More information about sensR at CRAN
Permanent link

Package protr updated to version 0.5-1 with previous version 0.4-1 dated 2014-10-10

Title: Generating Various Numerical Representation Schemes of Protein Sequence
Description: Comprehensive toolkit for generating various numerical representation schemes of protein sequence. The descriptors and similarity scores included are extensively utilized in bioinformatics and chemogenomics research. For full functionality, ncbi-blast+ is required.
Author: Nan Xiao , Qingsong Xu , Dongsheng Cao
Maintainer: Nan Xiao

Diff between protr versions 0.4-1 dated 2014-10-10 and 0.5-1 dated 2014-12-23

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More information about protr at CRAN
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New package OutrankingTools with initial version 1.0
Package: OutrankingTools
Type: Package
Title: Functions for Solving Multiple-criteria Decision-making Problems
Version: 1.0
Date: 2014-12-22
Author: Michel Prombo or
Maintainer: Michel Prombo
Description: Functions to process ''outranking'' ELECTRE methods existing in the literature. See, e.g., about the outranking approach and the foundations of ELECTRE methods.
Depends: igraph
License: GPL (>= 2)
Packaged: 2014-12-23 14:32:05 UTC; exb627
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-24 01:26:42

More information about OutrankingTools at CRAN
Permanent link

Package OutlierDM updated to version 1.1.1 with previous version 1.0-0 dated 2014-03-23

Title: Outlier Detection for Multi-replicated High-throughput Data
Description: Detecting outlying values such as genes, peptides or samples for multi-replicated high-throughput high-dimensional data
Author: Soo-Heang Eo [aut, cre], HyungJun Cho [aut]
Maintainer: Soo-Heang Eo

Diff between OutlierDM versions 1.0-0 dated 2014-03-23 and 1.1.1 dated 2014-12-23

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 OutlierDM-1.1.1/OutlierDM/R/odm.control.R     |    5 
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More information about OutlierDM at CRAN
Permanent link

New package manipulate with initial version 1.0.1
Package: manipulate
Type: Package
Title: Interactive Plots for RStudio
Version: 1.0.1
Date: 2014-12-23
Authors@R: c( person("JJ", "Allaire", role = c("aut", "cre"), comment = "R interface", email = "jj@rstudio.com"), person(family = "RStudio", role = "cph") )
Maintainer: JJ Allaire
Description: Interactive plotting functions for use within RStudio. The manipulate function accepts a plotting expression and a set of controls (e.g. slider, picker, checkbox, or button) which are used to dynamically change values within the expression. When a value is changed using its corresponding control the expression is automatically re-executed and the plot is redrawn.
Depends: R (>= 2.11.1)
SystemRequirements: RStudio - http://www.rstudio.com/products/rstudio/
License: GPL-2
LazyLoad: yes
Packaged: 2014-12-23 18:00:41 UTC; jjallaire
Author: JJ Allaire [aut, cre] (R interface), RStudio [cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-24 01:18:44

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Package mads updated to version 0.1.1 with previous version 0.1.0 dated 2014-11-25

Title: Multi-Analysis Distance Sampling
Description: Performs distance sampling analyses on a number of species accounting for unidentified sightings, model uncertainty and covariate uncertainty.
Author: Laura Marshall
Maintainer: Laura Marshall

Diff between mads versions 0.1.0 dated 2014-11-25 and 0.1.1 dated 2014-12-23

 mads-0.1.0/mads/inst/testData/ds_example         |only
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 mads-0.1.1/mads/inst/tests/test_singleObserver.R |    4 +--
 7 files changed, 32 insertions(+), 17 deletions(-)

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Package gender updated to version 0.4.3 with previous version 0.4.2 dated 2014-12-03

Title: Predict Gender from Names Using Historical Data
Description: Encodes gender based on names and dates of birth, using either the Social Security Administration's data set of first names by year of birth or the Census Bureau data from 1789 to 1940, both from the United States of America. By using these data sets instead of lists of male and female names, this package is able to more accurately guess the gender of a name, and it is able to report the probability that a name was male or female.
Author: Lincoln Mullen [aut, cre], Cameron Blevins [ctb], Ben Schmidt [ctb]
Maintainer: Lincoln Mullen

Diff between gender versions 0.4.2 dated 2014-12-03 and 0.4.3 dated 2014-12-23

 DESCRIPTION                       |    6 +++---
 MD5                               |   26 +++++++++++++-------------
 NAMESPACE                         |    2 +-
 NEWS                              |    5 +++++
 README.md                         |    2 +-
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 man/gender.Rd                     |    3 ++-
 man/gender_demo.Rd                |    3 ++-
 man/gender_genderize.Rd           |    3 ++-
 man/gender_ipums_usa.Rd           |    3 ++-
 man/gender_kantrowitz.Rd          |    3 ++-
 man/gender_ssa.Rd                 |    3 ++-
 man/get_correction_factors.Rd     |    3 ++-
 man/install_genderdata_package.Rd |    3 ++-
 14 files changed, 41 insertions(+), 27 deletions(-)

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Package DSsim updated to version 1.0.2 with previous version 1.0.1 dated 2014-03-18

Title: Distance Sampling Simulations
Description: Performs distance sampling simulations. It repeatedly generates instances of a user defined population within a given survey region, generates realisations of a survey design (currently these must be pre-generated using Distance software) and simulates the detection process. The data are then analysed so that the results can be compared for accuracy and precision across all replications. This will allow users to select survey designs which will give them the best accuracy and precision given their expectations about population distribution. Any uncertainty in population distribution or population parameters can be included by running the different survey designs for a number of different population descriptions. An example simulation can be found in the help file for make.simulation.
Author: Laura Marshall
Maintainer: Laura Marshall

Diff between DSsim versions 1.0.1 dated 2014-03-18 and 1.0.2 dated 2014-12-23

 DSsim-1.0.1/DSsim/R/display.glossary.R                 |only
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 DSsim-1.0.2/DSsim/R/Region.R                           |   32 ++-
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Package csn updated to version 1.1.1 with previous version 1.1 dated 2014-07-01

Title: Closed Skew-Normal Distribution
Description: This package provides functions for computing the density and the log-likelihood function of closed-skew normal variates, and for generating random vectors sampled from this distribution.
Author: Dmitry Pavlyuk, Eugene Girtcius
Maintainer: Dmitry Pavlyuk

Diff between csn versions 1.1 dated 2014-07-01 and 1.1.1 dated 2014-12-23

 DESCRIPTION |   15 +++++++++------
 MD5         |    2 +-
 2 files changed, 10 insertions(+), 7 deletions(-)

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Package additivityTests updated to version 1.1-4 with previous version 1.1-2 dated 2014-01-17

Title: Additivity Tests in the Two Way Anova with Single Sub-class Numbers
Description: Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.
Author: Marie Simeckova [aut], Thomas Rusch [aut], Petr Simecek [cre]
Maintainer: Petr Simecek

Diff between additivityTests versions 1.1-2 dated 2014-01-17 and 1.1-4 dated 2014-12-23

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 MD5                            |   30 +++++++++++++++---------------
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New package reconstructr with initial version 0.5
Package: reconstructr
Type: Package
Title: Session Reconstruction and Analysis
Version: 0.5
Date: 2014-12-06
Author: Oliver Keyes
Maintainer: Oliver Keyes
Description: Functions to aid in reconstructing sessions and efficiently calculating an array of metrics from the resulting data, including bounce rate, time-on-page, and session length. Although primarily designed for web data and analytics, its approach is plausibly applicable to other domains.
License: MIT + file LICENSE
LinkingTo: Rcpp
Imports: Rcpp
Suggests: testthat, knitr
VignetteBuilder: knitr
Packaged: 2014-12-23 16:08:57 UTC; ironholds
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-23 18:07:16

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Package investr updated to version 1.2.0 with previous version 1.1.2 dated 2014-09-15

Title: Inverse Estimation/Calibration Functions
Description: Functions to facilitate inverse estimation/calibration in linear, nonlinear, and (linear) mixed models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

Diff between investr versions 1.1.2 dated 2014-09-15 and 1.2.0 dated 2014-12-23

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New package dygraphs with initial version 0.3.3
Package: dygraphs
Type: Package
Title: Interface to Dygraphs Interactive Time Series Charting Library
Version: 0.3.3
Date: 2014-12-23
Authors@R: c( person("Dan", "Vanderkam", role = c("aut", "cph"), comment = "dygraphs library in htmlwidgets/lib, http://dygraphs.com/"), person("JJ", "Allaire", role = c("aut", "cre"), comment = "R interface", email = "jj@rstudio.com"), person(family = "RStudio", role = "cph") )
Maintainer: JJ Allaire
Description: An R interface to the dygraphs JavaScript charting library (a copy of which is included in the package). Provides rich facilities for charting time-series data in R, including highly configurable series- and axis-display and interactive features like zoom/pan and series/point highlighting.
License: MIT + file LICENSE
Depends: R (>= 3.0)
Imports: magrittr, htmlwidgets (>= 0.3.2), zoo (>= 1.7-10), xts (>= 0.9-7)
Suggests: testthat
Enhances: rmarkdown (>= 0.3.3), shiny (>= 0.10.2.1)
Packaged: 2014-12-23 15:37:56 UTC; jjallaire
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib, http://dygraphs.com/), JJ Allaire [aut, cre] (R interface), RStudio [cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-23 18:01:22

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New package Deriv with initial version 1.0
Package: Deriv
Type: Package
Title: Symbolic Differentiation
Version: 1.0
Date: 2014-12-10
Author: Andrew Clausen
Maintainer: Serguei Sokol
Description: Compared to R functions deriv() and D(), Deriv() admits user-defined function for derivation as well as function substitution in arguments of functions to be derived.
License: GPL (>= 3)
Packaged: 2014-12-23 15:54:00 UTC; sokol
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-23 18:07:14

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Package StratSel updated to version 1.1 with previous version 1.0 dated 2014-06-16

Title: Strategic Selection Estimator
Description: This package provides functions to estimate a strategic selection estimator. A strategic selection estimator is an agent error model in which the two random components are not assumed to be orthogonal. In addition this package provides generic functions to print and plot objects of the class "StratSel" as well as the necessary functions to create tables for LaTeX. There is also a function to create dyadic data sets.
Author: Lucas Leemann
Maintainer: Lucas Leemann

Diff between StratSel versions 1.0 dated 2014-06-16 and 1.1 dated 2014-12-23

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Package pvar updated to version 2.1 with previous version 2.0 dated 2014-11-04

Title: Calculation and Application of p-variation
Description: The calculation of p-variation of the finite sample data
Author: Vygantas Butkus
Maintainer: Vygantas Butkus

Diff between pvar versions 2.0 dated 2014-11-04 and 2.1 dated 2014-12-23

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Package ordinal updated to version 2014.12-22 with previous version 2014.11-14 dated 2014-11-14

Title: Regression Models for Ordinal Data
Description: Implementation of cumulative link (mixed) models also known as ordered regression models, proportional odds models, proportional hazards models for grouped survival times and ordered logit/probit/... models. Estimation is via maximum likelihood and mixed models are fitted with the Laplace approximation and adaptive Gauss-Hermite quadrature. Multiple random effect terms are allowed and they may be nested, crossed or partially nested/crossed. Restrictions of symmetry and equidistance can be imposed on the thresholds (cut-points/intercepts). Standard model methods are available (summary, anova, drop-methods, step, confint, predict etc.) in addition to profile methods and slice methods for visualizing the likelihood function and checking convergence.
Author: Rune Haubo Bojesen Christensen [aut, cre]
Maintainer: Rune Haubo Bojesen Christensen

Diff between ordinal versions 2014.11-14 dated 2014-11-14 and 2014.12-22 dated 2014-12-23

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Package msBP updated to version 1.0-2 with previous version 1.0-1 dated 2014-10-13

Title: Multiscale Bernstein Polynomials for Densities
Description: Performs Bayesian nonparametric multiscale density estimation and multiscale testing of group differences with multiscale Bernstein polynomials (msBP) mixtures as in Canale and Dunson (2014).
Author: Antonio Canale
Maintainer: Antonio Canale

Diff between msBP versions 1.0-1 dated 2014-10-13 and 1.0-2 dated 2014-12-23

 ChangeLog               |    1 
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Package MODISTools updated to version 0.94.5 with previous version 0.94.4 dated 2014-09-08

Title: MODIS Subsetting Tools
Description: Provides several functions for downloading, storing and processing subsets of MODIS Land Processes data as a batch process.
Author: Sean Tuck, Helen Phillips
Maintainer: Sean Tuck

Diff between MODISTools versions 0.94.4 dated 2014-09-08 and 0.94.5 dated 2014-12-23

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 MODISTools-0.94.5/MODISTools/vignettes/UsingMODISTools.Rnw                 |  367 +-
 87 files changed, 4216 insertions(+), 4247 deletions(-)

More information about MODISTools at CRAN
Permanent link

Package RcppEigen updated to version 0.3.2.3.0 with previous version 0.3.2.2.0 dated 2014-08-21

Title: Rcpp integration for the Eigen templated linear algebra library.
Description: R and Eigen integration using Rcpp. Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on Lapack and level-3 BLAS. The RcppEigen package includes the header files from the Eigen C++ template library (currently version 3.2.3). Thus users do not need to install Eigen itself in order to use RcppEigen. Since version 3.1.1, Eigen is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel; the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel

Diff between RcppEigen versions 0.3.2.2.0 dated 2014-08-21 and 0.3.2.3.0 dated 2014-12-23

 ChangeLog                                                        |   16 
 DESCRIPTION                                                      |   10 
 MD5                                                              |  100 ++--
 README.md                                                        |    2 
 build/vignette.rds                                               |binary
 inst/NEWS.Rd                                                     |    6 
 inst/doc/RcppEigen-Introduction.pdf                              |binary
 inst/examples/lmBenchmark.R                                      |    2 
 inst/include/Eigen/src/Cholesky/LDLT.h                           |    2 
 inst/include/Eigen/src/Core/ArrayWrapper.h                       |   10 
 inst/include/Eigen/src/Core/DenseBase.h                          |    6 
 inst/include/Eigen/src/Core/Diagonal.h                           |    8 
 inst/include/Eigen/src/Core/GeneralProduct.h                     |    4 
 inst/include/Eigen/src/Core/MapBase.h                            |    6 
 inst/include/Eigen/src/Core/MatrixBase.h                         |   16 
 inst/include/Eigen/src/Core/PermutationMatrix.h                  |    5 
 inst/include/Eigen/src/Core/ProductBase.h                        |   14 
 inst/include/Eigen/src/Core/Ref.h                                |   15 
 inst/include/Eigen/src/Core/Replicate.h                          |    4 
 inst/include/Eigen/src/Core/TriangularMatrix.h                   |   21 
 inst/include/Eigen/src/Core/arch/NEON/PacketMath.h               |   15 
 inst/include/Eigen/src/Core/arch/SSE/MathFunctions.h             |    6 
 inst/include/Eigen/src/Core/products/CoeffBasedProduct.h         |   10 
 inst/include/Eigen/src/Core/util/Macros.h                        |   11 
 inst/include/Eigen/src/Core/util/Memory.h                        |    5 
 inst/include/Eigen/src/Core/util/StaticAssert.h                  |    4 
 inst/include/Eigen/src/Core/util/XprHelper.h                     |    2 
 inst/include/Eigen/src/Eigen2Support/LeastSquares.h              |    1 
 inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h      |   18 
 inst/include/Eigen/src/Geometry/Hyperplane.h                     |   12 
 inst/include/Eigen/src/Geometry/Rotation2D.h                     |    9 
 inst/include/Eigen/src/Geometry/Transform.h                      |   29 -
 inst/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h         |    3 
 inst/include/Eigen/src/PardisoSupport/PardisoSupport.h           |    2 
 inst/include/Eigen/src/SVD/JacobiSVD.h                           |   28 -
 inst/include/Eigen/src/SparseCore/AmbiVector.h                   |    4 
 inst/include/Eigen/src/SparseCore/SparseBlock.h                  |   90 +++
 inst/include/Eigen/src/SparseCore/SparseDenseProduct.h           |    9 
 inst/include/Eigen/src/SparseCore/SparseMatrixBase.h             |    3 
 inst/include/Eigen/src/SparseCore/SparsePermutation.h            |    2 
 inst/include/Eigen/src/SparseLU/SparseLU.h                       |    5 
 inst/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h      |    4 
 inst/include/Eigen/src/SparseQR/SparseQR.h                       |   59 +-
 inst/include/Eigen/src/UmfPackSupport/UmfPackSupport.h           |  112 +++-
 inst/include/unsupported/Eigen/AdolcForward                      |only
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 inst/unitTests/runit.sparse.R                                    |   34 +
 inst/unitTests/runit.transform.R                                 |   22 
 inst/unitTests/runit.wrap.R                                      |  249 ++++++----
 54 files changed, 695 insertions(+), 301 deletions(-)

More information about RcppEigen at CRAN
Permanent link

Package devEMF (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-22 1.2
2012-02-07 1.1
2011-10-19 0.9-4
2011-05-21 0.9-3
2011-05-17 0.9-2
2011-04-24 0.9

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