Title: Spatial Forecast Verification
Diff between SpatialVx versions 0.2-1 dated 2014-05-13 and 0.2-2 dated 2014-12-23
Description: Functions to perform spatial forecast verification
Author: Eric Gilleland
Maintainer: Eric Gilleland
DESCRIPTION | 6 +++---
MD5 | 9 ++++++---
R/Features.R | 4 ++--
R/SigFuns.R | 3 +++
R/imomenter.R |only
man/Mij.Rd |only
man/imomenter.Rd |only
7 files changed, 14 insertions(+), 8 deletions(-)
Title: Statistical Significance of the Sharpe Ratio
Diff between SharpeR versions 0.1401 dated 2014-01-03 and 0.1501 dated 2014-12-23
Description: A collection of tools for analyzing significance of trading
strategies, based on the Sharpe ratio and overfit of the same.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav
SharpeR-0.1401/SharpeR/ChangeLog |only
SharpeR-0.1501/SharpeR/DESCRIPTION | 27 -
SharpeR-0.1501/SharpeR/MD5 | 97 ++--
SharpeR-0.1501/SharpeR/NAMESPACE | 54 +-
SharpeR-0.1501/SharpeR/R/SharpeR.r | 9
SharpeR-0.1501/SharpeR/R/distributions.r | 22 -
SharpeR-0.1501/SharpeR/R/sr.r | 8
SharpeR-0.1501/SharpeR/R/utils.r | 13
SharpeR-0.1501/SharpeR/README.md | 4
SharpeR-0.1501/SharpeR/build/vignette.rds |binary
SharpeR-0.1501/SharpeR/inst/CITATION | 8
SharpeR-0.1501/SharpeR/inst/doc/SharpeR.R | 123 ++----
SharpeR-0.1501/SharpeR/inst/doc/SharpeR.Rnw | 2
SharpeR-0.1501/SharpeR/inst/doc/SharpeR.pdf |binary
SharpeR-0.1501/SharpeR/inst/doc/SharpeRatio.R | 148 +++----
SharpeR-0.1501/SharpeR/inst/doc/SharpeRatio.Rnw | 2
SharpeR-0.1501/SharpeR/inst/doc/SharpeRatio.pdf |binary
SharpeR-0.1501/SharpeR/inst/extdata/haircut_study.rda |binary
SharpeR-0.1501/SharpeR/inst/tests/test-distributions.r | 16
SharpeR-0.1501/SharpeR/man/NEWS.Rd | 56 ++
SharpeR-0.1501/SharpeR/man/SharpeR.Rd | 344 ++++++++---------
SharpeR-0.1501/SharpeR/man/as.del_sropt.Rd | 105 ++---
SharpeR-0.1501/SharpeR/man/as.sr.Rd | 146 +++----
SharpeR-0.1501/SharpeR/man/as.sropt.Rd | 128 +++---
SharpeR-0.1501/SharpeR/man/confint.Rd | 131 +++---
SharpeR-0.1501/SharpeR/man/del_sropt.Rd | 143 +++----
SharpeR-0.1501/SharpeR/man/dsr.Rd | 177 ++++----
SharpeR-0.1501/SharpeR/man/dsropt.Rd | 191 ++++-----
SharpeR-0.1501/SharpeR/man/inference.Rd | 83 +---
SharpeR-0.1501/SharpeR/man/is.del_sropt.Rd | 20
SharpeR-0.1501/SharpeR/man/is.sr.Rd | 38 +
SharpeR-0.1501/SharpeR/man/is.sropt.Rd | 32 -
SharpeR-0.1501/SharpeR/man/ism_vcov.Rd | 98 ++--
SharpeR-0.1501/SharpeR/man/pco_sropt.Rd | 114 ++---
SharpeR-0.1501/SharpeR/man/plambdap.Rd | 121 ++---
SharpeR-0.1501/SharpeR/man/power.sr_test.Rd | 131 +++---
SharpeR-0.1501/SharpeR/man/power.sropt_test.Rd | 93 ++--
SharpeR-0.1501/SharpeR/man/print.Rd | 46 +-
SharpeR-0.1501/SharpeR/man/reannualize.Rd | 68 +--
SharpeR-0.1501/SharpeR/man/se.Rd | 100 ++--
SharpeR-0.1501/SharpeR/man/sm_vcov.Rd | 73 +--
SharpeR-0.1501/SharpeR/man/sr.Rd | 108 ++---
SharpeR-0.1501/SharpeR/man/sr_equality_test.Rd | 167 +++-----
SharpeR-0.1501/SharpeR/man/sr_test.Rd | 163 +++-----
SharpeR-0.1501/SharpeR/man/sr_vcov.Rd | 107 ++---
SharpeR-0.1501/SharpeR/man/sropt.Rd | 113 ++---
SharpeR-0.1501/SharpeR/man/sropt_test.Rd | 115 ++---
SharpeR-0.1501/SharpeR/vignettes/SharpeR.Rnw | 2
SharpeR-0.1501/SharpeR/vignettes/SharpeR.bib | 2
SharpeR-0.1501/SharpeR/vignettes/SharpeRatio.Rnw | 2
50 files changed, 1838 insertions(+), 1912 deletions(-)
Title: Thurstonian Models for Sensory Discrimination
Diff between sensR versions 1.4-0 dated 2014-05-08 and 1.4-4 dated 2014-12-23
Description: Provides methods for sensory discrimination methods;
duotrio, tetrad, triangle, 2-AFC, 3-AFC, A-not A, same-different,
2-AC and degree-of-difference.
This enables the calculation of d-primes, standard errors of
d-primes, sample size and power computations, and
comparisons of different d-primes. Methods for profile likelihood
confidence intervals and plotting are included.
Author: Rune Haubo Bojesen Christensen [aut, cre],
Per Bruun Brockhoff [aut]
Maintainer: Rune Haubo Bojesen Christensen
DESCRIPTION | 15 ++++---
MD5 | 30 ++++++++-------
NEWS | 19 +++++++++
R/ROC.R | 13 ++++--
R/betaBin.R | 22 +++++------
R/discrim.R | 73 +++++++++++++++++++++++++++++---------
build/vignette.rds |binary
inst/doc/methodology.pdf |binary
inst/doc/twoACexamples.pdf |binary
man/AUC.Rd | 7 ++-
man/betabin.Rd | 29 +++++++++------
man/discrim.Rd | 23 +++++++++--
man/dodPwr.Rd | 23 +++++++++--
tests/betabin.Rout.save | 14 +++----
tests/testthat/test-AUC_ROC.R |only
tests/testthat/test-betabin.R |only
tests/testthat/test-discrim_pd0.R |only
tests/testthat/test-misc.R |only
18 files changed, 184 insertions(+), 84 deletions(-)
Title: Generating Various Numerical Representation Schemes of Protein
Sequence
Diff between protr versions 0.4-1 dated 2014-10-10 and 0.5-1 dated 2014-12-23
Description: Comprehensive toolkit for generating various numerical
representation schemes of protein sequence. The descriptors and similarity
scores included are extensively utilized in bioinformatics and
chemogenomics research. For full functionality, ncbi-blast+ is required.
Author: Nan Xiao
Maintainer: Nan Xiao
protr-0.4-1/protr/R/pcm03extractPropScales.R |only
protr-0.4-1/protr/man/extractPropScales.Rd |only
protr-0.5-1/protr/DESCRIPTION | 13 -
protr-0.5-1/protr/MD5 | 237 ++++++++++++++-------------
protr-0.5-1/protr/NAMESPACE | 10 -
protr-0.5-1/protr/NEWS | 24 ++
protr-0.5-1/protr/R/desc01AAC.R | 2
protr-0.5-1/protr/R/desc02DC.R | 2
protr-0.5-1/protr/R/desc03TC.R | 2
protr-0.5-1/protr/R/desc04MoreauBroto.R | 43 ++--
protr-0.5-1/protr/R/desc05Moran.R | 8
protr-0.5-1/protr/R/desc06Geary.R | 8
protr-0.5-1/protr/R/desc07CTDC.R | 8
protr-0.5-1/protr/R/desc07CTDCClass.R |only
protr-0.5-1/protr/R/desc08CTDT.R | 8
protr-0.5-1/protr/R/desc08CTDTClass.R |only
protr-0.5-1/protr/R/desc09CTDD.R | 8
protr-0.5-1/protr/R/desc09CTDDClass.R |only
protr-0.5-1/protr/R/desc10CTriad.R | 26 +-
protr-0.5-1/protr/R/desc10CTriadClass.R |only
protr-0.5-1/protr/R/desc11SOCN.R | 2
protr-0.5-1/protr/R/desc12QSO.R | 2
protr-0.5-1/protr/R/desc13PAAC.R | 8
protr-0.5-1/protr/R/desc14APAAC.R | 8
protr-0.5-1/protr/R/desc15PSSM.R | 16 +
protr-0.5-1/protr/R/desc15PSSMAcc.R | 20 +-
protr-0.5-1/protr/R/desc15PSSMFeature.R | 18 +-
protr-0.5-1/protr/R/misc01readFASTA.R | 2
protr-0.5-1/protr/R/misc02readPDB.R | 2
protr-0.5-1/protr/R/misc03protcheck.R | 2
protr-0.5-1/protr/R/misc04protseg.R | 2
protr-0.5-1/protr/R/misc05getUniProt.R | 7
protr-0.5-1/protr/R/misc06acc.R | 7
protr-0.5-1/protr/R/par01parSeqSim.R | 22 +-
protr-0.5-1/protr/R/par02parGOSim.R | 24 ++
protr-0.5-1/protr/R/pcm01extractScales.R | 48 ++---
protr-0.5-1/protr/R/pcm01extractScalesGap.R |only
protr-0.5-1/protr/R/pcm02extractDescScales.R | 5
protr-0.5-1/protr/R/pcm03extractProtFP.R |only
protr-0.5-1/protr/R/pcm03extractProtFPGap.R |only
protr-0.5-1/protr/R/pcm04extractFAScales.R | 8
protr-0.5-1/protr/R/pcm05extractMDSScales.R | 10 -
protr-0.5-1/protr/R/pcm06extractBLOSUM.R | 38 ++--
protr-0.5-1/protr/R/protr-datalist.R | 72 ++++----
protr-0.5-1/protr/R/protr-package.R | 11 -
protr-0.5-1/protr/README | 18 --
protr-0.5-1/protr/build/vignette.rds |binary
protr-0.5-1/protr/inst/doc/protr.R | 2
protr-0.5-1/protr/inst/doc/protr.Rnw | 60 +++---
protr-0.5-1/protr/inst/doc/protr.pdf |binary
protr-0.5-1/protr/inst/protseq/align.fasta |only
protr-0.5-1/protr/man/AA2DACOR.Rd | 5
protr-0.5-1/protr/man/AA3DMoRSE.Rd | 5
protr-0.5-1/protr/man/AAACF.Rd | 5
protr-0.5-1/protr/man/AABLOSUM100.Rd | 5
protr-0.5-1/protr/man/AABLOSUM45.Rd | 5
protr-0.5-1/protr/man/AABLOSUM50.Rd | 5
protr-0.5-1/protr/man/AABLOSUM62.Rd | 5
protr-0.5-1/protr/man/AABLOSUM80.Rd | 5
protr-0.5-1/protr/man/AABurden.Rd | 5
protr-0.5-1/protr/man/AACPSA.Rd | 5
protr-0.5-1/protr/man/AAConn.Rd | 5
protr-0.5-1/protr/man/AAConst.Rd | 5
protr-0.5-1/protr/man/AADescAll.Rd | 5
protr-0.5-1/protr/man/AAEdgeAdj.Rd | 5
protr-0.5-1/protr/man/AAEigIdx.Rd | 5
protr-0.5-1/protr/man/AAFGC.Rd | 5
protr-0.5-1/protr/man/AAGETAWAY.Rd | 5
protr-0.5-1/protr/man/AAGeom.Rd | 5
protr-0.5-1/protr/man/AAInfo.Rd | 5
protr-0.5-1/protr/man/AAMOE2D.Rd | 5
protr-0.5-1/protr/man/AAMOE3D.Rd | 5
protr-0.5-1/protr/man/AAMetaInfo.Rd | 5
protr-0.5-1/protr/man/AAMolProp.Rd | 5
protr-0.5-1/protr/man/AAPAM120.Rd | 5
protr-0.5-1/protr/man/AAPAM250.Rd | 5
protr-0.5-1/protr/man/AAPAM30.Rd | 5
protr-0.5-1/protr/man/AAPAM40.Rd | 5
protr-0.5-1/protr/man/AAPAM70.Rd | 5
protr-0.5-1/protr/man/AARDF.Rd | 5
protr-0.5-1/protr/man/AARandic.Rd | 5
protr-0.5-1/protr/man/AATopo.Rd | 5
protr-0.5-1/protr/man/AATopoChg.Rd | 5
protr-0.5-1/protr/man/AAWHIM.Rd | 5
protr-0.5-1/protr/man/AAWalk.Rd | 5
protr-0.5-1/protr/man/AAindex.Rd | 4
protr-0.5-1/protr/man/OptAA3d.Rd | 7
protr-0.5-1/protr/man/acc.Rd | 10 -
protr-0.5-1/protr/man/extractAAC.Rd | 7
protr-0.5-1/protr/man/extractAPAAC.Rd | 13 -
protr-0.5-1/protr/man/extractBLOSUM.Rd | 19 +-
protr-0.5-1/protr/man/extractCTDC.Rd | 12 +
protr-0.5-1/protr/man/extractCTDCClass.Rd |only
protr-0.5-1/protr/man/extractCTDD.Rd | 12 +
protr-0.5-1/protr/man/extractCTDDClass.Rd |only
protr-0.5-1/protr/man/extractCTDT.Rd | 12 +
protr-0.5-1/protr/man/extractCTDTClass.Rd |only
protr-0.5-1/protr/man/extractCTriad.Rd | 14 +
protr-0.5-1/protr/man/extractCTriadClass.Rd |only
protr-0.5-1/protr/man/extractDC.Rd | 5
protr-0.5-1/protr/man/extractDescScales.Rd | 8
protr-0.5-1/protr/man/extractFAScales.Rd | 11 -
protr-0.5-1/protr/man/extractGeary.Rd | 11 +
protr-0.5-1/protr/man/extractMDSScales.Rd | 16 -
protr-0.5-1/protr/man/extractMoran.Rd | 11 +
protr-0.5-1/protr/man/extractMoreauBroto.Rd | 14 +
protr-0.5-1/protr/man/extractPAAC.Rd | 12 -
protr-0.5-1/protr/man/extractPSSM.Rd | 19 +-
protr-0.5-1/protr/man/extractPSSMAcc.Rd | 21 +-
protr-0.5-1/protr/man/extractPSSMFeature.Rd | 21 +-
protr-0.5-1/protr/man/extractProtFP.Rd |only
protr-0.5-1/protr/man/extractProtFPGap.Rd |only
protr-0.5-1/protr/man/extractQSO.Rd | 8
protr-0.5-1/protr/man/extractSOCN.Rd | 6
protr-0.5-1/protr/man/extractScales.Rd | 29 +--
protr-0.5-1/protr/man/extractScalesGap.Rd |only
protr-0.5-1/protr/man/extractTC.Rd | 5
protr-0.5-1/protr/man/getUniProt.Rd | 9 -
protr-0.5-1/protr/man/parGOSim.Rd | 13 +
protr-0.5-1/protr/man/parSeqSim.Rd | 18 +-
protr-0.5-1/protr/man/protcheck.Rd | 8
protr-0.5-1/protr/man/protr-package.Rd | 23 --
protr-0.5-1/protr/man/protseg.Rd | 9 -
protr-0.5-1/protr/man/readFASTA.Rd | 6
protr-0.5-1/protr/man/readPDB.Rd | 5
protr-0.5-1/protr/man/twoGOSim.Rd | 17 +
protr-0.5-1/protr/man/twoSeqSim.Rd | 18 +-
protr-0.5-1/protr/vignettes/protr.Rnw | 60 +++---
128 files changed, 817 insertions(+), 659 deletions(-)
More information about OutrankingTools at CRAN
Permanent link
Title: Outlier Detection for Multi-replicated High-throughput Data
Diff between OutlierDM versions 1.0-0 dated 2014-03-23 and 1.1.1 dated 2014-12-23
Description: Detecting outlying values such as genes, peptides or samples for multi-replicated high-throughput high-dimensional data
Author: Soo-Heang Eo [aut, cre],
HyungJun Cho [aut]
Maintainer: Soo-Heang Eo
OutlierDM-1.0-0/OutlierDM/R/subfunctions.R |only
OutlierDM-1.1.1/OutlierDM/DESCRIPTION | 16
OutlierDM-1.1.1/OutlierDM/MD5 | 29 -
OutlierDM-1.1.1/OutlierDM/NAMESPACE | 15
OutlierDM-1.1.1/OutlierDM/R/OutlierD.R | 609 +++++++++++++++-----------
OutlierDM-1.1.1/OutlierDM/R/odm.control.R | 5
OutlierDM-1.1.1/OutlierDM/R/subfunctions.r |only
OutlierDM-1.1.1/OutlierDM/data/toy.rda |only
OutlierDM-1.1.1/OutlierDM/inst/CITATION |only
OutlierDM-1.1.1/OutlierDM/inst/NEWS.Rd | 31 +
OutlierDM-1.1.1/OutlierDM/man/lcms3.Rd | 39 -
OutlierDM-1.1.1/OutlierDM/man/odm-class.Rd | 89 ++-
OutlierDM-1.1.1/OutlierDM/man/odm-package.Rd | 103 ++--
OutlierDM-1.1.1/OutlierDM/man/odm.Rd | 276 ++++++++---
OutlierDM-1.1.1/OutlierDM/man/odm.control.Rd | 67 +-
OutlierDM-1.1.1/OutlierDM/man/oneplot.rd |only
OutlierDM-1.1.1/OutlierDM/man/plot.odm.Rd | 89 +--
OutlierDM-1.1.1/OutlierDM/man/rgrubbs.test.Rd |only
OutlierDM-1.1.1/OutlierDM/man/toy.Rd |only
19 files changed, 839 insertions(+), 529 deletions(-)
Title: Multi-Analysis Distance Sampling
Diff between mads versions 0.1.0 dated 2014-11-25 and 0.1.1 dated 2014-12-23
Description: Performs distance sampling analyses on a number of species
accounting for unidentified sightings, model uncertainty and covariate
uncertainty.
Author: Laura Marshall
Maintainer: Laura Marshall
mads-0.1.0/mads/inst/testData/ds_example |only
mads-0.1.1/mads/DESCRIPTION | 25 ++++++++++++++++++-----
mads-0.1.1/mads/MD5 | 13 ++++-------
mads-0.1.1/mads/NEWS |only
mads-0.1.1/mads/R/check.ddf.models.R | 3 +-
mads-0.1.1/mads/R/fit.ddf.models.R | 4 ++-
mads-0.1.1/mads/inst/tests/test_singleObserver.R | 4 +--
7 files changed, 32 insertions(+), 17 deletions(-)
Title: Predict Gender from Names Using Historical Data
Diff between gender versions 0.4.2 dated 2014-12-03 and 0.4.3 dated 2014-12-23
Description: Encodes gender based on names and dates of birth, using either the
Social Security Administration's data set of first names by year of birth
or the Census Bureau data from 1789 to 1940, both from the United States of
America. By using these data sets instead of lists of male and female names,
this package is able to more accurately guess the gender of a name, and it
is able to report the probability that a name was male or female.
Author: Lincoln Mullen [aut, cre],
Cameron Blevins [ctb],
Ben Schmidt [ctb]
Maintainer: Lincoln Mullen
DESCRIPTION | 6 +++---
MD5 | 26 +++++++++++++-------------
NAMESPACE | 2 +-
NEWS | 5 +++++
README.md | 2 +-
man/check_genderdata_package.Rd | 3 ++-
man/gender.Rd | 3 ++-
man/gender_demo.Rd | 3 ++-
man/gender_genderize.Rd | 3 ++-
man/gender_ipums_usa.Rd | 3 ++-
man/gender_kantrowitz.Rd | 3 ++-
man/gender_ssa.Rd | 3 ++-
man/get_correction_factors.Rd | 3 ++-
man/install_genderdata_package.Rd | 3 ++-
14 files changed, 41 insertions(+), 27 deletions(-)
Title: Distance Sampling Simulations
Diff between DSsim versions 1.0.1 dated 2014-03-18 and 1.0.2 dated 2014-12-23
Description: Performs distance sampling simulations. It repeatedly
generates instances of a user defined population within a given survey
region, generates realisations of a survey design (currently these must
be pre-generated using Distance software) and simulates the detection
process. The data are then analysed so that the results can be compared for
accuracy and precision across all replications. This will allow users to
select survey designs which will give them the best accuracy and precision
given their expectations about population distribution. Any uncertainty in
population distribution or population parameters can be included by running
the different survey designs for a number of different population
descriptions. An example simulation can be found in the help file
for make.simulation.
Author: Laura Marshall
Maintainer: Laura Marshall
DSsim-1.0.1/DSsim/R/display.glossary.R |only
DSsim-1.0.1/DSsim/inst/tests/test_BasicExample.R |only
DSsim-1.0.1/DSsim/man/display.glossary.Rd |only
DSsim-1.0.2/DSsim/DESCRIPTION | 49 ++--
DSsim-1.0.2/DSsim/MD5 | 173 ++++++++---------
DSsim-1.0.2/DSsim/NAMESPACE | 2
DSsim-1.0.2/DSsim/NEWS |only
DSsim-1.0.2/DSsim/R/Class.Constructors.R | 23 +-
DSsim-1.0.2/DSsim/R/DDF.Analysis.R | 63 +++++-
DSsim-1.0.2/DSsim/R/DDF.Data.R | 1
DSsim-1.0.2/DSsim/R/DS.Analysis.R | 2
DSsim-1.0.2/DSsim/R/Density.R | 96 ++++++---
DSsim-1.0.2/DSsim/R/Detectability.R | 18 +
DSsim-1.0.2/DSsim/R/LT.Design.R | 16 +
DSsim-1.0.2/DSsim/R/LT.EqAngle.ZZ.Design.R | 2
DSsim-1.0.2/DSsim/R/LT.EqSpace.ZZ.Design.R | 2
DSsim-1.0.2/DSsim/R/LT.Random.Design.R | 2
DSsim-1.0.2/DSsim/R/LT.Survey.R | 4
DSsim-1.0.2/DSsim/R/LT.Survey.Results.R | 10
DSsim-1.0.2/DSsim/R/LT.Systematic.Design.R | 1
DSsim-1.0.2/DSsim/R/LT.User.Specified.Design.R | 1
DSsim-1.0.2/DSsim/R/Line.Transect.R | 7
DSsim-1.0.2/DSsim/R/Obs.Table.R | 1
DSsim-1.0.2/DSsim/R/PT.Design.R | 2
DSsim-1.0.2/DSsim/R/Population.Description.R | 7
DSsim-1.0.2/DSsim/R/Population.R | 4
DSsim-1.0.2/DSsim/R/Region.R | 32 ++-
DSsim-1.0.2/DSsim/R/Region.Table.R | 1
DSsim-1.0.2/DSsim/R/Sample.Table.R | 1
DSsim-1.0.2/DSsim/R/Simulation.R | 89 +++++---
DSsim-1.0.2/DSsim/R/Simulation.Summary.R | 9
DSsim-1.0.2/DSsim/R/Single.Obs.DDF.Data.R | 4
DSsim-1.0.2/DSsim/R/Single.Obs.LT.Survey.R | 6
DSsim-1.0.2/DSsim/R/Survey.Design.R | 1
DSsim-1.0.2/DSsim/R/Survey.R | 3
DSsim-1.0.2/DSsim/R/add.dist.error.R |only
DSsim-1.0.2/DSsim/R/add.summary.results.R | 69 ++++--
DSsim-1.0.2/DSsim/R/check.intersection.R | 21 +-
DSsim-1.0.2/DSsim/R/check.shapefile.R |only
DSsim-1.0.2/DSsim/R/create.bins.R |only
DSsim-1.0.2/DSsim/R/description.summary.R |only
DSsim-1.0.2/DSsim/R/generate.pop.D.R | 47 ++--
DSsim-1.0.2/DSsim/R/generate.pop.N.R | 53 ++---
DSsim-1.0.2/DSsim/R/generic.functions.R | 33 ++-
DSsim-1.0.2/DSsim/R/get.bound.box.R | 2
DSsim-1.0.2/DSsim/R/get.sampler.info.R | 62 +++---
DSsim-1.0.2/DSsim/R/get.shapefile.names.R | 2
DSsim-1.0.2/DSsim/R/hn.detect.R | 6
DSsim-1.0.2/DSsim/R/hr.detect.R | 19 +
DSsim-1.0.2/DSsim/R/simulate.detections.R | 3
DSsim-1.0.2/DSsim/R/single.simulation.loop.R | 88 ++++++--
DSsim-1.0.2/DSsim/inst/tests/test_Intersections.R |only
DSsim-1.0.2/DSsim/man/DDF.Analysis-class.Rd | 42 ++--
DSsim-1.0.2/DSsim/man/DDF.Data-class.Rd | 18 +
DSsim-1.0.2/DSsim/man/Density-class.Rd | 101 +++++++--
DSsim-1.0.2/DSsim/man/Detectability-class.Rd | 44 ++--
DSsim-1.0.2/DSsim/man/LT.Design-class.Rd | 28 +-
DSsim-1.0.2/DSsim/man/LT.Survey-class.Rd | 30 +-
DSsim-1.0.2/DSsim/man/LT.Survey.Results-class.Rd | 93 ++++++---
DSsim-1.0.2/DSsim/man/Line.Transect-class.Rd | 74 ++++++-
DSsim-1.0.2/DSsim/man/Obs.Table-class.Rd | 19 +
DSsim-1.0.2/DSsim/man/Population-class.Rd | 60 +++--
DSsim-1.0.2/DSsim/man/Population.Description-class.Rd | 59 ++---
DSsim-1.0.2/DSsim/man/Region-class.Rd | 122 ++++++++---
DSsim-1.0.2/DSsim/man/Region.Table-class.Rd | 19 +
DSsim-1.0.2/DSsim/man/Sample.Table-class.Rd | 19 +
DSsim-1.0.2/DSsim/man/Simulation-class.Rd | 144 +++++++-------
DSsim-1.0.2/DSsim/man/Simulation.Summary-class.Rd | 31 ++-
DSsim-1.0.2/DSsim/man/Single.Obs.DDF.Data-class.Rd | 51 ++++-
DSsim-1.0.2/DSsim/man/Single.Obs.LT.Survey-class.Rd | 6
DSsim-1.0.2/DSsim/man/Survey-class.Rd | 20 +
DSsim-1.0.2/DSsim/man/Survey.Design-class.Rd | 55 ++---
DSsim-1.0.2/DSsim/man/add.hotspot-methods.Rd | 23 +-
DSsim-1.0.2/DSsim/man/create.bins.Rd |only
DSsim-1.0.2/DSsim/man/create.region.table-methods.Rd | 18 +
DSsim-1.0.2/DSsim/man/create.sample.table-methods.Rd | 19 +
DSsim-1.0.2/DSsim/man/create.survey.results-methods.Rd | 36 ++-
DSsim-1.0.2/DSsim/man/description.summary.Rd |only
DSsim-1.0.2/DSsim/man/generate.population-methods.Rd | 36 ++-
DSsim-1.0.2/DSsim/man/generate.transects-methods.Rd | 39 ++-
DSsim-1.0.2/DSsim/man/get.N-methods.Rd | 12 -
DSsim-1.0.2/DSsim/man/get.area-methods.Rd | 13 -
DSsim-1.0.2/DSsim/man/get.distance.data-methods.Rd | 14 -
DSsim-1.0.2/DSsim/man/make.ddf.analysis.list.Rd | 37 +--
DSsim-1.0.2/DSsim/man/make.density.Rd | 49 ++--
DSsim-1.0.2/DSsim/man/make.design.Rd | 72 +++----
DSsim-1.0.2/DSsim/man/make.detectability.Rd | 33 +--
DSsim-1.0.2/DSsim/man/make.population.description.Rd | 45 +---
DSsim-1.0.2/DSsim/man/make.region.Rd | 42 +---
DSsim-1.0.2/DSsim/man/make.simulation.Rd | 43 +---
DSsim-1.0.2/DSsim/man/rename.duplicates.Rd | 30 +-
DSsim-1.0.2/DSsim/man/run-methods.Rd | 38 ++-
DSsim-1.0.2/DSsim/man/run.analysis-methods.Rd | 41 ++--
93 files changed, 1724 insertions(+), 988 deletions(-)
Title: Closed Skew-Normal Distribution
Diff between csn versions 1.1 dated 2014-07-01 and 1.1.1 dated 2014-12-23
Description: This package provides functions for computing the density
and the log-likelihood function of closed-skew normal variates,
and for generating random vectors sampled from this distribution.
Author: Dmitry Pavlyuk, Eugene Girtcius
Maintainer: Dmitry Pavlyuk
DESCRIPTION | 15 +++++++++------
MD5 | 2 +-
2 files changed, 10 insertions(+), 7 deletions(-)
Title: Additivity Tests in the Two Way Anova with Single Sub-class
Numbers
Diff between additivityTests versions 1.1-2 dated 2014-01-17 and 1.1-4 dated 2014-12-23
More information about additivityTests at CRAN
Description: Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell
and modified Tukey non-additivity tests.
Author: Marie Simeckova [aut], Thomas Rusch [aut], Petr Simecek [cre]
Maintainer: Petr Simecek
DESCRIPTION | 12 ++++++------
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 2 ++
R/print.aTest.R | 1 -
README.md | 2 +-
build/vignette.rds |binary
man/Boik.Rd | 9 +++------
man/additivityTests-package.Rd | 30 +++++++++++-------------------
man/critical.values.Rd | 15 +++++++--------
man/johnson.graybill.test.Rd | 39 +++++++++++++++------------------------
man/lbi.test.Rd | 40 +++++++++++++++-------------------------
man/mandel.test.Rd | 32 +++++++++++++-------------------
man/mtukey.test.Rd | 37 ++++++++++++++-----------------------
man/print.aTest.Rd | 5 +++--
man/tukey.test.Rd | 34 ++++++++++++++--------------------
man/tusell.test.Rd | 38 +++++++++++++++-----------------------
16 files changed, 134 insertions(+), 192 deletions(-)
Permanent link
Title: Inverse Estimation/Calibration Functions
Diff between investr versions 1.1.2 dated 2014-09-15 and 1.2.0 dated 2014-12-23
Description: Functions to facilitate inverse estimation/calibration in linear,
nonlinear, and (linear) mixed models. A generic function is also provided
for plotting fitted regression models with or without confidence/prediction
bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell
DESCRIPTION | 8 -
MD5 | 30 ++--
NAMESPACE | 3
NEWS | 7 -
R/calibrate.R | 31 ++--
R/data.R | 32 ++++
R/invest.R | 345 ++++++++++++++++++++++++++++++++++++++++++++++++----
R/plotFit.R | 28 ----
R/simulate.nls.R |only
README.md | 92 +------------
data/nasturtium.rda |only
man/arsenic.Rd | 12 -
man/calibrate.Rd | 28 +---
man/crystal.Rd | 8 -
man/invest.Rd | 93 +++++++++-----
man/nasturtium.Rd |only
man/plot.bootCal.Rd |only
man/plotFit.Rd | 28 ----
18 files changed, 501 insertions(+), 244 deletions(-)
Title: Strategic Selection Estimator
Diff between StratSel versions 1.0 dated 2014-06-16 and 1.1 dated 2014-12-23
Description: This package provides functions to estimate a strategic selection estimator. A strategic selection estimator is an agent error model in which the two random components are not assumed to be orthogonal. In addition this package provides generic functions to print and plot objects of the class "StratSel" as well as the necessary functions to create tables for LaTeX. There is also a function to create dyadic data sets.
Author: Lucas Leemann
Maintainer: Lucas Leemann
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NAMESPACE | 1 +
data/data.fake.rda |binary
man/data.fake.Rd | 18 +++++++++---------
man/plot.StratSel.Rd | 7 ++++---
6 files changed, 24 insertions(+), 22 deletions(-)
Title: Calculation and Application of p-variation
Diff between pvar versions 2.0 dated 2014-11-04 and 2.1 dated 2014-12-23
Description: The calculation of p-variation of the finite sample data
Author: Vygantas Butkus
Maintainer: Vygantas Butkus
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/pvar-package.R | 2 +-
README.md | 3 ++-
inst/tests/test-C.R | 5 +++--
inst/tests/test-Cinternal.R | 2 ++
inst/tests/test-PvarBreakTest.R | 2 +-
inst/tests/test-pvar.R | 8 +++++++-
man/pvar-package.Rd | 4 ++--
vignettes/pvar_intro.Rnw | 2 +-
10 files changed, 32 insertions(+), 22 deletions(-)
Title: Regression Models for Ordinal Data
Diff between ordinal versions 2014.11-14 dated 2014-11-14 and 2014.12-22 dated 2014-12-23
Description: Implementation of cumulative link (mixed) models also known
as ordered regression models, proportional odds models, proportional
hazards models for grouped survival times and ordered logit/probit/...
models. Estimation is via maximum likelihood and mixed models are fitted
with the Laplace approximation and adaptive Gauss-Hermite quadrature.
Multiple random effect terms are allowed and they may be nested, crossed or
partially nested/crossed. Restrictions of symmetry and equidistance can be
imposed on the thresholds (cut-points/intercepts). Standard model
methods are available (summary, anova, drop-methods, step,
confint, predict etc.) in addition to profile methods and slice
methods for visualizing the likelihood function and checking
convergence.
Author: Rune Haubo Bojesen Christensen [aut, cre]
Maintainer: Rune Haubo Bojesen Christensen
ordinal-2014.11-14/ordinal/R/experimental.R |only
ordinal-2014.12-22/ordinal/DESCRIPTION | 18
ordinal-2014.12-22/ordinal/MD5 | 46 -
ordinal-2014.12-22/ordinal/NEWS | 5
ordinal-2014.12-22/ordinal/R/clm.R | 2
ordinal-2014.12-22/ordinal/R/clm.Thetamat.R | 41 -
ordinal-2014.12-22/ordinal/R/clm.fitter.R | 2
ordinal-2014.12-22/ordinal/R/clm.frames.R | 23
ordinal-2014.12-22/ordinal/R/clm.predict.R | 67 +
ordinal-2014.12-22/ordinal/R/clm.profile.R | 20
ordinal-2014.12-22/ordinal/R/clm.slice.R | 3
ordinal-2014.12-22/ordinal/R/clm.slice2D.R | 6
ordinal-2014.12-22/ordinal/R/clm2.R | 49 -
ordinal-2014.12-22/ordinal/R/convergence.R | 4
ordinal-2014.12-22/ordinal/R/utils.R | 16
ordinal-2014.12-22/ordinal/inst/doc/clm_intro.R | 73 -
ordinal-2014.12-22/ordinal/inst/doc/clm_intro.Rnw | 1
ordinal-2014.12-22/ordinal/inst/doc/clm_intro.pdf |binary
ordinal-2014.12-22/ordinal/inst/doc/clm_tutorial.pdf |binary
ordinal-2014.12-22/ordinal/inst/doc/clmm2_tutorial.pdf |binary
ordinal-2014.12-22/ordinal/tests/test.clm.Theta.R |only
ordinal-2014.12-22/ordinal/tests/test.clm.convergence.R | 35
ordinal-2014.12-22/ordinal/tests/test.clm.profile.R |only
ordinal-2014.12-22/ordinal/tests/test.general.R |only
ordinal-2014.12-22/ordinal/vignettes/clm_intro.Rnw | 1
ordinal-2014.12-22/ordinal/vignettes/ordinal.bib | 590 ++++++++--------
26 files changed, 520 insertions(+), 482 deletions(-)
Title: Multiscale Bernstein Polynomials for Densities
Diff between msBP versions 1.0-1 dated 2014-10-13 and 1.0-2 dated 2014-12-23
Description: Performs Bayesian nonparametric multiscale density estimation and multiscale testing of group differences with multiscale Bernstein polynomials (msBP) mixtures as in Canale and Dunson (2014).
Author: Antonio Canale
Maintainer: Antonio Canale
ChangeLog | 1
DESCRIPTION | 8 ++--
MD5 | 36 +++++++++---------
R/generic.R | 24 +++---------
R/msBP.Gibbs.R | 9 ++--
R/msBP.test.R | 12 ++++--
R/vec2tree.R | 2 -
man/msBP.Gibbs.Rd | 13 +++---
man/msBP.postCluster.Rd | 4 +-
man/msBP.test.Rd | 13 +++---
src/auxGibbs.cpp | 92 ++++++++++++++++++++++++++++++++++++++++++------
src/auxGibbs.h | 2 -
src/bintree.cpp | 15 ++++++-
src/bintree.h | 5 +-
src/gibbs.cpp | 67 +++++++++++++++++++---------------
src/gibbs.h | 2 -
src/msBP.cpp | 33 ++++++++++++-----
src/msBP.h | 2 -
src/wrapper.cpp | 73 ++++++++++++++++++++++++++++----------
19 files changed, 275 insertions(+), 138 deletions(-)
Title: MODIS Subsetting Tools
Diff between MODISTools versions 0.94.4 dated 2014-09-08 and 0.94.5 dated 2014-12-23
Description: Provides several functions for downloading, storing and processing
subsets of MODIS Land Processes data as a batch process.
Author: Sean Tuck, Helen Phillips
Maintainer: Sean Tuck
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/1_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/2_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/3_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/4_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/5_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/6_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/7_MOD13Q1.asc |only
MODISTools-0.94.4/MODISTools/vignettes/MODISSubsetsMOD13Q1/8_MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/DESCRIPTION | 8
MODISTools-0.94.5/MODISTools/MD5 | 153 -
MODISTools-0.94.5/MODISTools/NAMESPACE | 6
MODISTools-0.94.5/MODISTools/R/BatchDownload.R | 350 +-
MODISTools-0.94.5/MODISTools/R/ConvertToDD.R | 366 +-
MODISTools-0.94.5/MODISTools/R/EndCoordinates.R | 64
MODISTools-0.94.5/MODISTools/R/ExtractTile.R | 102
MODISTools-0.94.5/MODISTools/R/FindID.R | 28
MODISTools-0.94.5/MODISTools/R/GetBands.R | 102
MODISTools-0.94.5/MODISTools/R/GetDates.R | 120
MODISTools-0.94.5/MODISTools/R/GetProducts.R | 94
MODISTools-0.94.5/MODISTools/R/GetSubset.R | 138 -
MODISTools-0.94.5/MODISTools/R/LandCover.R | 258 -
MODISTools-0.94.5/MODISTools/R/MODISGrid.R | 140 -
MODISTools-0.94.5/MODISTools/R/MODISSubsets.R | 458 +--
MODISTools-0.94.5/MODISTools/R/MODISSummaries.R | 736 ++---
MODISTools-0.94.5/MODISTools/R/MODISTimeSeries.R | 114
MODISTools-0.94.5/MODISTools/R/MODISTransects.R | 444 +--
MODISTools-0.94.5/MODISTools/R/QualityCheck.R | 258 -
MODISTools-0.94.5/MODISTools/R/UpdateSubsets.R | 116
MODISTools-0.94.5/MODISTools/R/WritePRJ.R |only
MODISTools-0.94.5/MODISTools/build/vignette.rds |binary
MODISTools-0.94.5/MODISTools/data/ConvertExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/data/EndCoordinatesExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/data/FindIDExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/data/QualityCheckExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/data/SubsetExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/data/TransectExample.txt.gz |binary
MODISTools-0.94.5/MODISTools/inst/CITATION |only
MODISTools-0.94.5/MODISTools/inst/doc/UsingMODISTools.R | 358 +-
MODISTools-0.94.5/MODISTools/inst/doc/UsingMODISTools.Rnw | 367 +-
MODISTools-0.94.5/MODISTools/inst/doc/UsingMODISTools.pdf |binary
MODISTools-0.94.5/MODISTools/man/BatchDownload.Rd | 14
MODISTools-0.94.5/MODISTools/man/ConvertExample.Rd | 36
MODISTools-0.94.5/MODISTools/man/ConvertToDD.Rd | 38
MODISTools-0.94.5/MODISTools/man/EndCoordinates.Rd | 48
MODISTools-0.94.5/MODISTools/man/EndCoordinatesExample.Rd | 40
MODISTools-0.94.5/MODISTools/man/ExtractTile.Rd | 94
MODISTools-0.94.5/MODISTools/man/FindID.Rd | 36
MODISTools-0.94.5/MODISTools/man/FindIDExample.rd | 40
MODISTools-0.94.5/MODISTools/man/GetBands.Rd | 42
MODISTools-0.94.5/MODISTools/man/GetDates.Rd | 46
MODISTools-0.94.5/MODISTools/man/GetProducts.Rd | 38
MODISTools-0.94.5/MODISTools/man/GetSubset.Rd | 90
MODISTools-0.94.5/MODISTools/man/LandCover.Rd | 72
MODISTools-0.94.5/MODISTools/man/MODISGrid.Rd | 86
MODISTools-0.94.5/MODISTools/man/MODISSubsets.Rd | 120
MODISTools-0.94.5/MODISTools/man/MODISSummaries.Rd | 192 -
MODISTools-0.94.5/MODISTools/man/MODISTimeSeries.Rd | 110
MODISTools-0.94.5/MODISTools/man/MODISTools-package.Rd | 38
MODISTools-0.94.5/MODISTools/man/MODISTransects.Rd | 106
MODISTools-0.94.5/MODISTools/man/QualityCheck.Rd | 98
MODISTools-0.94.5/MODISTools/man/QualityCheckExample.Rd | 38
MODISTools-0.94.5/MODISTools/man/SubsetExample.Rd | 44
MODISTools-0.94.5/MODISTools/man/TransectExample.Rd | 42
MODISTools-0.94.5/MODISTools/man/UpdateSubsets.Rd | 74
MODISTools-0.94.5/MODISTools/man/WritePRJ.Rd |only
MODISTools-0.94.5/MODISTools/tests/Test.R | 318 +-
MODISTools-0.94.5/MODISTools/vignettes/LandCover/LandCoverSummary.csv | 34
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/1_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/2_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/3_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/4_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/5_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/6_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/7_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMCD12Q1/8_MCD12Q1.asc | 6
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/1___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/2___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/3___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/4___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/5___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/6___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/7___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSubsetsMOD13Q1/8___MOD13Q1.asc |only
MODISTools-0.94.5/MODISTools/vignettes/MODISSummaries/Data.csv | 18
MODISTools-0.94.5/MODISTools/vignettes/MODISSummaries/Summary.csv | 1298 +++++-----
MODISTools-0.94.5/MODISTools/vignettes/MODISTransects/Transect.csv | 18
MODISTools-0.94.5/MODISTools/vignettes/UsingMODISTools.Rnw | 367 +-
87 files changed, 4216 insertions(+), 4247 deletions(-)
Title: Rcpp integration for the Eigen templated linear algebra library.
Diff between RcppEigen versions 0.3.2.2.0 dated 2014-08-21 and 0.3.2.3.0 dated 2014-12-23
Description: R and Eigen integration using Rcpp.
Eigen is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on Lapack and level-3 BLAS.
The RcppEigen package includes the header files from the Eigen C++
template library (currently version 3.2.3). Thus users do not need to
install Eigen itself in order to use RcppEigen.
Since version 3.1.1, Eigen is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel
ChangeLog | 16
DESCRIPTION | 10
MD5 | 100 ++--
README.md | 2
build/vignette.rds |binary
inst/NEWS.Rd | 6
inst/doc/RcppEigen-Introduction.pdf |binary
inst/examples/lmBenchmark.R | 2
inst/include/Eigen/src/Cholesky/LDLT.h | 2
inst/include/Eigen/src/Core/ArrayWrapper.h | 10
inst/include/Eigen/src/Core/DenseBase.h | 6
inst/include/Eigen/src/Core/Diagonal.h | 8
inst/include/Eigen/src/Core/GeneralProduct.h | 4
inst/include/Eigen/src/Core/MapBase.h | 6
inst/include/Eigen/src/Core/MatrixBase.h | 16
inst/include/Eigen/src/Core/PermutationMatrix.h | 5
inst/include/Eigen/src/Core/ProductBase.h | 14
inst/include/Eigen/src/Core/Ref.h | 15
inst/include/Eigen/src/Core/Replicate.h | 4
inst/include/Eigen/src/Core/TriangularMatrix.h | 21
inst/include/Eigen/src/Core/arch/NEON/PacketMath.h | 15
inst/include/Eigen/src/Core/arch/SSE/MathFunctions.h | 6
inst/include/Eigen/src/Core/products/CoeffBasedProduct.h | 10
inst/include/Eigen/src/Core/util/Macros.h | 11
inst/include/Eigen/src/Core/util/Memory.h | 5
inst/include/Eigen/src/Core/util/StaticAssert.h | 4
inst/include/Eigen/src/Core/util/XprHelper.h | 2
inst/include/Eigen/src/Eigen2Support/LeastSquares.h | 1
inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | 18
inst/include/Eigen/src/Geometry/Hyperplane.h | 12
inst/include/Eigen/src/Geometry/Rotation2D.h | 9
inst/include/Eigen/src/Geometry/Transform.h | 29 -
inst/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | 3
inst/include/Eigen/src/PardisoSupport/PardisoSupport.h | 2
inst/include/Eigen/src/SVD/JacobiSVD.h | 28 -
inst/include/Eigen/src/SparseCore/AmbiVector.h | 4
inst/include/Eigen/src/SparseCore/SparseBlock.h | 90 +++
inst/include/Eigen/src/SparseCore/SparseDenseProduct.h | 9
inst/include/Eigen/src/SparseCore/SparseMatrixBase.h | 3
inst/include/Eigen/src/SparseCore/SparsePermutation.h | 2
inst/include/Eigen/src/SparseLU/SparseLU.h | 5
inst/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h | 4
inst/include/Eigen/src/SparseQR/SparseQR.h | 59 +-
inst/include/Eigen/src/UmfPackSupport/UmfPackSupport.h | 112 +++-
inst/include/unsupported/Eigen/AdolcForward |only
inst/include/unsupported/Eigen/AlignedVector3 |only
inst/include/unsupported/Eigen/ArpackSupport |only
inst/include/unsupported/Eigen/MPRealSupport |only
inst/include/unsupported/Eigen/OpenGLSupport |only
inst/include/unsupported/Eigen/src/Eigenvalues |only
inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h | 1
inst/unitTests/runit.sparse.R | 34 +
inst/unitTests/runit.transform.R | 22
inst/unitTests/runit.wrap.R | 249 ++++++----
54 files changed, 695 insertions(+), 301 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-22 1.2
2012-02-07 1.1
2011-10-19 0.9-4
2011-05-21 0.9-3
2011-05-17 0.9-2
2011-04-24 0.9