Title: Rcpp Integration for the Armadillo Templated Linear Algebra
Library
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo. Armadillo is licensed under the MPL 2.0, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
Diff between RcppArmadillo versions 0.4.550.1.0 dated 2014-11-28 and 0.4.600.0 dated 2014-12-27
ChangeLog | 28 +++ DESCRIPTION | 8 MD5 | 66 +++---- inst/NEWS.Rd | 22 ++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo_bits/Col_bones.hpp | 6 inst/include/armadillo_bits/Col_meat.hpp | 60 ++++++ inst/include/armadillo_bits/Mat_bones.hpp | 3 inst/include/armadillo_bits/Mat_meat.hpp | 13 + inst/include/armadillo_bits/Proxy.hpp | 168 ------------------- inst/include/armadillo_bits/Row_bones.hpp | 6 inst/include/armadillo_bits/Row_meat.hpp | 60 ++++++ inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/arrayops_meat.hpp | 46 +++-- inst/include/armadillo_bits/compiler_setup.hpp | 185 +++++++++++++++++---- inst/include/armadillo_bits/eGlue_bones.hpp | 1 inst/include/armadillo_bits/eGlue_meat.hpp | 6 inst/include/armadillo_bits/eOp_bones.hpp | 1 inst/include/armadillo_bits/eglue_core_meat.hpp | 13 - inst/include/armadillo_bits/eop_core_meat.hpp | 13 - inst/include/armadillo_bits/fn_accu.hpp | 120 ++++++++++--- inst/include/armadillo_bits/fn_norm.hpp | 210 +++++++++++++++++------- inst/include/armadillo_bits/gmm_diag_meat.hpp | 2 inst/include/armadillo_bits/op_all_meat.hpp | 42 ++-- inst/include/armadillo_bits/op_diagvec_meat.hpp | 2 inst/include/armadillo_bits/op_dot_meat.hpp | 2 inst/include/armadillo_bits/op_expmat_meat.hpp | 11 + inst/include/armadillo_bits/op_htrans_meat.hpp | 84 +++++++-- inst/include/armadillo_bits/op_reshape_meat.hpp | 2 inst/include/armadillo_bits/op_strans_meat.hpp | 136 ++++++++++----- inst/include/armadillo_bits/subview_bones.hpp | 42 +--- inst/include/armadillo_bits/subview_meat.hpp | 120 +++++++++++++ inst/include/armadillo_bits/unwrap.hpp | 124 +++++++------- 34 files changed, 1073 insertions(+), 535 deletions(-)
Title: Mixture Models for Clustering and Classification
Description: An implementation of all 14 Gaussian parsimonious
clustering models (GPCMs) for model-based clustering and
model-based classification.
Author: Ryan P. Browne, Aisha ElSherbiny and Paul D. McNicholas
Maintainer: Ryan Browne
Diff between mixture versions 1.1 dated 2014-07-12 and 1.2 dated 2014-12-27
ChangeLog | 18 ++++++--- DESCRIPTION | 10 ++--- MD5 | 18 +++++---- NAMESPACE | 6 ++- R/mixture.R | 108 +++++++++++++++++++++++++++++++++------------------------ inst/CITATION | 38 ++++++++++---------- man/gpcm.Rd | 33 ++++++----------- man/mixture.Rd | 10 ++--- src |only 9 files changed, 132 insertions(+), 109 deletions(-)
Title: Miscellaneous Collection of Functions for Medical Data Analysis
Description: A collection of miscellaneous functions for medical data analysis. Visualization
of multidimensional data, diagnostic test calibration, pairwise tests for qualitative variables and outcome simulation.
Author: Antoine Filipovic Pierucci
Maintainer: Antoine Filipovic Pierucci
Diff between rmngb versions 0.5-1 dated 2014-09-21 and 0.6-1 dated 2014-12-27
DESCRIPTION | 14 ++++++++------ MD5 | 16 ++++++++++------ NAMESPACE | 4 +++- NEWS | 9 +++++++++ R/counter.R |only R/kde2dQuantile.R | 8 ++++---- R/mergeV.R |only R/utils.R | 6 ------ man/closest.Rd | 18 +----------------- man/counter.Rd |only man/mergeV.Rd |only 11 files changed, 35 insertions(+), 40 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner
Diff between stochvol versions 0.9-0 dated 2014-10-16 and 0.9-1 dated 2014-12-27
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS | 7 ++++++- build/vignette.rds |binary data/exrates.RData |binary inst/doc/article.Rnw | 15 ++++++++++++++- inst/doc/article.pdf |binary vignettes/article.Rnw | 15 ++++++++++++++- vignettes/mybib.bib | 2 +- 9 files changed, 48 insertions(+), 17 deletions(-)
Title: A Framework to Perform Phylotranscriptomics Analyses for
Evolutionary Developmental Biology Research
Description: A statistical framework to combine evolutionary information with transcriptome data to detect evolutionary signals and conserved stages in biological processes
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost
Diff between myTAI versions 0.0.1 dated 2014-11-01 and 0.0.2 dated 2014-12-27
DESCRIPTION | 20 - MD5 | 124 ++++---- NAMESPACE | 2 R/EarlyConservationTest.R | 127 ++++++-- R/FlatLineTest.R | 66 ++-- R/PlotBarRE.R | 2 R/PlotCorrelation.R | 2 R/PlotDistribution.R | 2 R/PlotMeans.R | 8 R/PlotPattern.R | 57 ++- R/PlotRE.R | 2 R/ReductiveHourglassTest.R | 111 +++++-- R/TAI.R | 2 R/TDI.R | 2 R/age.apply.R | 2 R/base.R | 80 +++-- R/bootMatrix.R | 2 R/combinatorialSignificance.R | 26 + R/datasets.R | 4 R/ecScore.R | 2 R/pMatrix.R | 2 R/rel_exp.R | 4 R/rhScore.R | 2 R/tf.R | 2 README.md | 9 inst/doc/Advanced.R | 67 ++++ inst/doc/Advanced.Rmd | 88 +++++- inst/doc/Advanced.html | 74 ++++- inst/doc/Intermediate.R | 159 ++++++----- inst/doc/Intermediate.Rmd | 182 ++++++++---- inst/doc/Intermediate.html | 197 ++++++++----- inst/doc/Introduction.R | 350 +++++++++++++++++------- inst/doc/Introduction.Rmd | 490 ++++++++++++++++++++++++++-------- inst/doc/Introduction.html | 422 +++++++++++++++++++++-------- man/DivergenceExpressionSetExample.Rd | 5 man/EarlyConservationTest.Rd | 10 man/FlatLineTest.Rd | 9 man/MatchMap.Rd | 19 - man/PhyloExpressionSetExample.Rd | 5 man/PlotBarRE.Rd | 5 man/PlotCorrelation.Rd | 5 man/PlotDistribution.Rd | 5 man/PlotMeans.Rd | 5 man/PlotPattern.Rd | 7 man/PlotRE.Rd | 5 man/RE.Rd | 5 man/REMatrix.Rd | 5 man/ReductiveHourglassTest.Rd | 10 man/TAI.Rd | 5 man/TDI.Rd | 5 man/age.apply.Rd | 5 man/bar.colors.Rd | 5 man/bootMatrix.Rd | 5 man/combinatorialSignificance.Rd | 7 man/ecScore.Rd | 5 man/is.ExpressionSet.Rd | 5 man/omitMatrix.Rd | 5 man/pMatrix.Rd | 5 man/rhScore.Rd | 5 man/tf.Rd | 5 vignettes/Advanced.Rmd | 88 +++++- vignettes/Intermediate.Rmd | 182 ++++++++---- vignettes/Introduction.Rmd | 490 ++++++++++++++++++++++++++-------- 63 files changed, 2584 insertions(+), 1029 deletions(-)
Title: Extremely Randomized Trees (ExtraTrees) Method for
Classification and Regression
Description: Classification and regression based on an ensemble of decision trees. The package also provides extensions of ExtraTrees to multi-task learning and quantile regression. Uses Java implementation of the method.
Author: Jaak Simm, Ildefons Magrans de Abril
Maintainer: Jaak Simm
Diff between extraTrees versions 1.0.4 dated 2014-11-08 and 1.0.5 dated 2014-12-27
DESCRIPTION | 12 +-- MD5 | 25 +++---- R/extraTrees.default.R | 10 +++ build/vignette.rds |binary inst/CHANGELOG | 4 + inst/doc/extraTrees.pdf |binary inst/java/ExtraTrees.jar |binary inst/tests/testthat/test-regression.r | 24 +++++++ inst/tests/testthat/test-weights.r |only java/src/org/extratrees/AbstractTrees.java | 85 ++++++++++++++++---------- java/src/org/extratrees/ExtraTrees.java | 4 - java/src/org/extratrees/FactorExtraTrees.java | 4 - java/src/org/extratrees/ShuffledIterator.java | 10 ++- man/extraTrees.Rd | 26 +++++++ 14 files changed, 146 insertions(+), 58 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-10 1.7
2014-07-15 1.6
2014-05-24 1.5
2013-12-28 1.4
2013-08-15 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-07 0.6
2013-11-28 0.5
2009-04-22 0.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-13 1.0.1