New package snpRF with initial version 0.3
Package: snpRF
Title: Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias
Version: 0.3
Date: 2014-12-31
Depends: R (>= 2.5.0), stats
Suggests: RColorBrewer, MASS
Author: Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener. Modifications of randomForest v 4.6-7 for SNPs by Greg Jenkins based on a method developed by Stacey Winham, Greg Jenkins and Joanna Biernacka.
Description: A modification of Breiman and Cutler's classification random forests modified for SNP (Single Nucleotide Polymorphism) data (based on randomForest v4.6-7) to prevent X-chromosome SNP variable importance bias compared to autosomal SNPs by simulating the process of X chromosome inactivation. Classification is based on a forest of trees using random subsets of SNPs and other variables as inputs.
Maintainer: Greg Jenkins
License: GPL (>= 2)
Packaged: 2014-12-31 15:33:18 UTC; jenkins
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-31 18:18:49

More information about snpRF at CRAN
Permanent link

Package maxLik updated to version 1.2-4 with previous version 1.2-0 dated 2013-10-22

Title: Maximum Likelihood Estimation
Description: Tools for Maximum Likelihood Estimation
Author: Ott Toomet , Arne Henningsen , with contributions from Spencer Graves and Yves Croissant
Maintainer: Arne Henningsen

Diff between maxLik versions 1.2-0 dated 2013-10-22 and 1.2-4 dated 2014-12-31

 DESCRIPTION                   |    8 
 MD5                           |   42 -
 NAMESPACE                     |    1 
 NEWS                          |   15 
 R/condiNumber.R               |    9 
 R/maxBFGSRCompute.R           |    2 
 R/summary.maxLik.R            |    6 
 R/sumt.R                      |   36 -
 man/condiNumber.Rd            |    9 
 man/maxBFGS.Rd                |    5 
 man/maxLik-internal.Rd        |    1 
 man/maxLik-methods.Rd         |    1 
 man/maxNR.Rd                  |   17 
 tests/constraints.R           |   54 +
 tests/constraints.Rout.save   |  145 ++--
 tests/examples.R              |    9 
 tests/examples.Rout.save      | 1481 ++++++++++++++++++++----------------------
 tests/finalHessian.Rout.save  |   64 -
 tests/fitExpDist.R            |   31 
 tests/fitExpDist.Rout.save    |  146 ++--
 tests/fitNormalDist.R         |  303 ++++----
 tests/fitNormalDist.Rout.save | 1122 +++++++++++++++----------------
 22 files changed, 1770 insertions(+), 1737 deletions(-)

More information about maxLik at CRAN
Permanent link

Package CNprep updated to version 2.0 with previous version 1.0 dated 2013-06-20

Title: Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Description: This package evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.
Author: Alex Krasnitz, Guoli Sun
Maintainer: Guoli Sun

Diff between CNprep versions 1.0 dated 2013-06-20 and 2.0 dated 2014-12-31

 CNprep-1.0/CNprep/spares              |only
 CNprep-2.0/CNprep/DESCRIPTION         |   16 ++++++----------
 CNprep-2.0/CNprep/MD5                 |   21 ++-------------------
 CNprep-2.0/CNprep/R/CNpreprocessing.R |    6 +++---
 4 files changed, 11 insertions(+), 32 deletions(-)

More information about CNprep at CRAN
Permanent link

Package cg updated to version 1.0-2 with previous version 1.0-1 dated 2014-07-14

Title: The cg package to compare groups
Description: cg is comprehensive data analysis software, and stands for "compare groups." Its genesis and evolution are driven by common needs to compare administrations, conditions, etc. in medicine research & development. The current version provides comparisons of unpaired samples, i.e. a linear model with one factor of at least two levels. It also provides comparisons of two paired samples. Good data graphs, modern statistical methods, and useful displays of results are emphasized.
Author: Bill Pikounis [aut, cre, cph], John Oleynick [aut], Eva Ye [ctb]
Maintainer: Bill Pikounis

Diff between cg versions 1.0-1 dated 2014-07-14 and 1.0-2 dated 2014-12-31

 DESCRIPTION                            |    8 +++----
 MD5                                    |   24 +++++++++++-----------
 R/00virtual.R                          |    2 -
 R/p00ReadInOneFactorData.R             |    2 -
 R/p03FormalOneFactorData.R             |   35 ++++++++++++++++++++++-----------
 R/p05SampleSizeOneFactorData.R         |    4 +--
 R/p13FormalPairedDifferenceData.R      |   14 +++++++++----
 R/p15SampleSizePairedDifferenceData.R  |    2 -
 R/valid.R                              |    2 -
 R/version.R                            |    2 -
 inst/NEWS                              |   16 ++++++++++++++-
 man/cg-package.Rd                      |    4 +--
 man/comparisonsTable.cgOneFactorFit.Rd |    9 ++++++--
 13 files changed, 81 insertions(+), 43 deletions(-)

More information about cg at CRAN
Permanent link

Package ca updated to version 0.58 with previous version 0.55 dated 2014-07-06

Title: Simple, Multiple and Joint Correspondence Analysis
Description: A package for computation and visualization of simple, multiple and joint correspondence analysis.
Author: Michael Greenacre [aut], Oleg Nenadic [aut, cre], Michael Friendly [ctb]
Maintainer: Oleg Nenadic

Diff between ca versions 0.55 dated 2014-07-06 and 0.58 dated 2014-12-31

 DESCRIPTION            |   16 ++++++---------
 MD5                    |   34 ++++++++++++++++----------------
 NEWS                   |   28 ++++++++++++++++++++++++++
 R/ca.r                 |    7 ++++++
 R/mjca.r               |   33 +++++++++++++++++++++++++++++--
 R/plot.ca.r            |   23 +++++++++++-----------
 R/plot.mjca.r          |   51 ++++++++++++++++++++++++++++++-------------------
 R/plot3d.ca.r          |   22 ++++++++++-----------
 R/print.summary.ca.r   |   24 +++++++++++++++--------
 R/print.summary.mjca.r |   21 +++++++++++---------
 R/summary.ca.r         |   29 ++++++++++++++++++++-------
 R/summary.mjca.r       |   12 +++++++----
 data/author.rda        |binary
 data/smoke.rda         |binary
 data/wg93.rda          |binary
 man/mjca.rd            |    7 ++++--
 man/summary.ca.rd      |    6 +++--
 man/summary.mjca.rd    |    5 ++--
 18 files changed, 214 insertions(+), 104 deletions(-)

More information about ca at CRAN
Permanent link

Package YaleToolkit updated to version 4.2.2 with previous version 4.1 dated 2012-02-20

Title: Data exploration tools from Yale University.
Description: This collection of data exploration tools was developed at Yale University for the graphical exploration of complex multivariate data; barcode and gpairs now have their own packages. The new big.read.table() provided here may be useful for large files when only a subset is needed.
Author: John W. Emerson and Walton A. Green
Maintainer: John W. Emerson

Diff between YaleToolkit versions 4.1 dated 2012-02-20 and 4.2.2 dated 2014-12-31

 YaleToolkit-4.1/YaleToolkit/man/YaleToolkit.package.Rd |only
 YaleToolkit-4.2.2/YaleToolkit/DESCRIPTION              |   23 -
 YaleToolkit-4.2.2/YaleToolkit/MD5                      |   16 -
 YaleToolkit-4.2.2/YaleToolkit/NAMESPACE                |   13 
 YaleToolkit-4.2.2/YaleToolkit/R/YaleToolkit.R          |only
 YaleToolkit-4.2.2/YaleToolkit/R/big.read.table.R       |only
 YaleToolkit-4.2.2/YaleToolkit/R/getnrows.R             |only
 YaleToolkit-4.2.2/YaleToolkit/R/whatis.R               |  227 ++++++++++-------
 YaleToolkit-4.2.2/YaleToolkit/README.md                |only
 YaleToolkit-4.2.2/YaleToolkit/man/YaleToolkit.Rd       |only
 YaleToolkit-4.2.2/YaleToolkit/man/big.read.table.Rd    |only
 YaleToolkit-4.2.2/YaleToolkit/man/getnrows.Rd          |only
 YaleToolkit-4.2.2/YaleToolkit/man/whatis.Rd            |   92 ++++--
 13 files changed, 235 insertions(+), 136 deletions(-)

More information about YaleToolkit at CRAN
Permanent link

Package swfscMisc updated to version 1.0.3 with previous version 1.0.1 dated 2014-08-12

Title: Miscellaneous Functions for Southwest Fisheries Science Center
Description: Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.
Author: Eric Archer
Maintainer: Eric Archer

Diff between swfscMisc versions 1.0.1 dated 2014-08-12 and 1.0.3 dated 2014-12-31

 swfscMisc-1.0.1/swfscMisc/R/mail.R                  |only
 swfscMisc-1.0.1/swfscMisc/man/eiaMisc.Rd            |only
 swfscMisc-1.0.1/swfscMisc/man/mail.Rd               |only
 swfscMisc-1.0.3/swfscMisc/DESCRIPTION               |    8 +-
 swfscMisc-1.0.3/swfscMisc/MD5                       |   77 +++++++++++---------
 swfscMisc-1.0.3/swfscMisc/NAMESPACE                 |   11 ++
 swfscMisc-1.0.3/swfscMisc/R/braces.R                |only
 swfscMisc-1.0.3/swfscMisc/R/circle.polygon.R        |    4 -
 swfscMisc-1.0.3/swfscMisc/R/das.map.R               |only
 swfscMisc-1.0.3/swfscMisc/R/das.merge.acoustic.R    |only
 swfscMisc-1.0.3/swfscMisc/R/das.read.R              |only
 swfscMisc-1.0.3/swfscMisc/R/das.spp.freq.R          |only
 swfscMisc-1.0.3/swfscMisc/R/lab.wid.R               |only
 swfscMisc-1.0.3/swfscMisc/R/lat.lon.axes.R          |   22 +++--
 swfscMisc-1.0.3/swfscMisc/R/sample.map.R            |   33 +++++++-
 swfscMisc-1.0.3/swfscMisc/R/sex.symbols.R           |only
 swfscMisc-1.0.3/swfscMisc/R/which.nearest.R         |only
 swfscMisc-1.0.3/swfscMisc/man/affin.prop.Rd         |    2 
 swfscMisc-1.0.3/swfscMisc/man/bearing.Rd            |    2 
 swfscMisc-1.0.3/swfscMisc/man/box.area.Rd           |    2 
 swfscMisc-1.0.3/swfscMisc/man/braces.Rd             |only
 swfscMisc-1.0.3/swfscMisc/man/central.quantile.Rd   |    2 
 swfscMisc-1.0.3/swfscMisc/man/circle.polygon.Rd     |    6 -
 swfscMisc-1.0.3/swfscMisc/man/color.name.Rd         |    2 
 swfscMisc-1.0.3/swfscMisc/man/convert.angle.Rd      |    2 
 swfscMisc-1.0.3/swfscMisc/man/convert.distance.Rd   |    2 
 swfscMisc-1.0.3/swfscMisc/man/copy.tri.Rd           |    2 
 swfscMisc-1.0.3/swfscMisc/man/das.map.Rd            |only
 swfscMisc-1.0.3/swfscMisc/man/das.merge.acoustic.Rd |only
 swfscMisc-1.0.3/swfscMisc/man/das.read.Rd           |only
 swfscMisc-1.0.3/swfscMisc/man/das.spp.freq.Rd       |only
 swfscMisc-1.0.3/swfscMisc/man/datum.Rd              |    2 
 swfscMisc-1.0.3/swfscMisc/man/destination.Rd        |    2 
 swfscMisc-1.0.3/swfscMisc/man/distance.Rd           |    2 
 swfscMisc-1.0.3/swfscMisc/man/geometric.mean.Rd     |    2 
 swfscMisc-1.0.3/swfscMisc/man/harmonic.mean.Rd      |    2 
 swfscMisc-1.0.3/swfscMisc/man/lab.wid.Rd            |only
 swfscMisc-1.0.3/swfscMisc/man/lat.lon.axes.Rd       |    6 -
 swfscMisc-1.0.3/swfscMisc/man/na.count.Rd           |    2 
 swfscMisc-1.0.3/swfscMisc/man/normalize.Rd          |    2 
 swfscMisc-1.0.3/swfscMisc/man/odds.Rd               |    2 
 swfscMisc-1.0.3/swfscMisc/man/one.arg.Rd            |    2 
 swfscMisc-1.0.3/swfscMisc/man/row.col.page.fit.Rd   |    2 
 swfscMisc-1.0.3/swfscMisc/man/sample.map.Rd         |   19 +++-
 swfscMisc-1.0.3/swfscMisc/man/scatterdens.Rd        |    6 -
 swfscMisc-1.0.3/swfscMisc/man/sex.symbols.Rd        |only
 swfscMisc-1.0.3/swfscMisc/man/uniform.test.Rd       |    2 
 swfscMisc-1.0.3/swfscMisc/man/which.nearest.Rd      |only
 swfscMisc-1.0.3/swfscMisc/man/zero.pad.Rd           |    2 
 49 files changed, 145 insertions(+), 87 deletions(-)

More information about swfscMisc at CRAN
Permanent link

New package strataG with initial version 0.9.2
Package: strataG
Type: Package
Title: Summaries and Population Structure Analyses of Haplotypic and Genotypic Data
Description: A toolkit for analyzing stratified population genetic data.
Version: 0.9.2
Date: 2014-11-14
Author: Eric Archer
Maintainer: Eric Archer
Imports: parallel, swfscMisc, pegas, ape, MASS, reshape2
LinkingTo: Rcpp
License: GNU General Public License
Packaged: 2014-12-31 07:38:26 UTC; eric.archer
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-31 16:07:32

More information about strataG at CRAN
Permanent link

New package Quor with initial version 0.1
Package: Quor
Version: 0.1
Date: 2014-12-30
Title: Quantile Ordering
Author: Adriano Polpo , Carlos A. de B. Pereira , Cassio P. de Campos
Maintainer: Cassio P. de Campos
Depends: R (>= 3.1.2)
Imports: combinat
Description: Functions to compute confidence statistics for ordering population quantiles.
License: GPL (>= 3) | file LICENSE
Repository: CRAN
URL: http://code.google.com/p/quor/
Packaged: 2014-12-30 14:10:55 UTC; cassio
NeedsCompilation: yes
Date/Publication: 2014-12-31 16:09:22

More information about Quor at CRAN
Permanent link

New package digitalPCR with initial version 1.0
Package: digitalPCR
Type: Package
Title: Estimate copy number for digital PCR
Version: 1.0
Date: 2014-12-28
Author: Xutao Deng
Maintainer: Xutao Deng
Description: The assay sensitivity is the minimum number of copies that the digital PCR assay can detect. Users provide serial dilution results in the format of counts of positive and total reaction wells. The output is the estimated assay sensitivity and the copy number per well in the initial dilute.
License: GPL-2
Packaged: 2014-12-31 09:00:26 UTC; xutao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-31 16:07:37

More information about digitalPCR at CRAN
Permanent link

New package blsAPI with initial version 0.1.1
Package: blsAPI
Version: 0.1.1
Title: Request Data From The U.S. Bureau of Labor Statistics API
Author: Michael Silva
Maintainer: Michael Silva
Description: Allows users to request data for one or multiple series through the U.S. Bureau of Labor Statistics API. Users provide parameters as specified in http://www.bls.gov/developers/api_signature.htm and the function returns a JSON string.
Depends: R (>= 3.1.1)
Imports: rjson, RCurl
License: GPL (>= 2)
LazyData: true
Packaged: 2014-12-31 12:58:06 UTC; The Silva Family
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-31 16:14:09

More information about blsAPI at CRAN
Permanent link

Package bibtex updated to version 0.4.0 with previous version 0.3-6 dated 2013-07-29

Title: bibtex parser
Description: Utility to parse a bibtex file
Author: Romain Francois [aut, cre], Kurt Hornik [ctb], Michael Koohafkan [ctb]
Maintainer: Romain Francois

Diff between bibtex versions 0.3-6 dated 2013-07-29 and 0.4.0 dated 2014-12-31

 bibtex-0.3-6/bibtex/src/bibparse.h          |only
 bibtex-0.3-6/bibtex/src/bibtex.h            |only
 bibtex-0.4.0/bibtex/DESCRIPTION             |   30 
 bibtex-0.4.0/bibtex/MD5                     |   24 
 bibtex-0.4.0/bibtex/R/bibtex.R              |    2 
 bibtex-0.4.0/bibtex/inst/NEWS.Rd            |   10 
 bibtex-0.4.0/bibtex/inst/bibparse.output    |  206 +--
 bibtex-0.4.0/bibtex/inst/grammar/biblex.l   |    4 
 bibtex-0.4.0/bibtex/inst/grammar/bibparse.y |   17 
 bibtex-0.4.0/bibtex/inst/include            |only
 bibtex-0.4.0/bibtex/src/Makevars            |    3 
 bibtex-0.4.0/bibtex/src/biblex.c            |   95 -
 bibtex-0.4.0/bibtex/src/bibparse.c          | 1686 ++++++++++++----------------
 bibtex-0.4.0/bibtex/src/stretchyList.c      |    2 
 14 files changed, 925 insertions(+), 1154 deletions(-)

More information about bibtex at CRAN
Permanent link

Package spatstat updated to version 1.40-0 with previous version 1.39-1 dated 2014-10-24

Title: Spatial Point Pattern Analysis, Model-fitting, Simulation, Tests
Description: Comprehensive toolbox for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network. Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley , Rolf Turner and Ege Rubak , with substantial contributions of code by Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van Lieshout; Tuomas Rajala; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by Q.W. Ang; S. Azaele; M. Baddeley; C. Beale; M. Bell; R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; L. Bischof; R. Bivand; J.M. Blanco Moreno; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; S. Das; P.J. Diggle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; E.D. Ford; P. Forbes; S. Frank; J. Franklin; N. Funwi-Gabga; O. Garcia; A. Gault; M. Genton; S. Ghalandarayeshi; J. Gilbey; J. Goldstick; P. Grabarnik; C. Graf; U. Hahn; A. Hardegen; M.B. Hansen; M. Hazelton; J. Heikkinen; M. Hering; M. Herrmann; K. Hornik; P. Hunziker; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Khanmohammadi; P. Kovesi; M. Kuhn; J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; J. Lee; G.P. Leser; H.T. Li; G. Limitsios; A. Lister; B. Madin; J. Marcus; K. Marchikanti; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; L. De Middeleer; R.K. Milne; E. Miranda; J. Moller; E. Mudrak; G.M. Nair; N. Nava; L.S. Nielsen; F. Nunes; J.R. Nyengaard; J. Oehlschlaegel; T. Onkelinx; S. O'Riordan; E. Parilov; J. Picka; N. Picard; M. Porter; S. Protsiv; A. Raftery; S. Rakshit; P. Ramon; X. Raynaud, M. Reiter; T.O. Richardson; B.D. Ripley; E. Rosenbaum; B. Rowlingson; J. Rudokas; J. Rudge; C. Ryan; F. Safavimanesh; A. Sarkka; K. Schladitz; S. Schutte; B.T. Scott; G.C. Shen; V. Shcherbakov; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; T. Thorarinsdottir; B. Turlach; K. Ummer; M. Uppala; A. van Burgel; T. Verbeke; M. Vihtakari; A. Villers; F. Vinatier; H. Wang; H. Wendrock; J. Wild; C. Witthoft; S. Wong; M. Woringer; M.E. Zamboni and A. Zeileis.
Maintainer: Adrian Baddeley

Diff between spatstat versions 1.39-1 dated 2014-10-24 and 1.40-0 dated 2014-12-31

 spatstat-1.39-1/spatstat/R/plot.listof.R            |only
 spatstat-1.39-1/spatstat/man/contour.listof.Rd      |only
 spatstat-1.40-0/spatstat/DESCRIPTION                |   22 
 spatstat-1.40-0/spatstat/MD5                        |  636 +++++++------
 spatstat-1.40-0/spatstat/NAMESPACE                  |   85 +
 spatstat-1.40-0/spatstat/NEWS                       |  345 +++++++
 spatstat-1.40-0/spatstat/R/Fest.R                   |    4 
 spatstat-1.40-0/spatstat/R/Gcom.R                   |   27 
 spatstat-1.40-0/spatstat/R/Gest.R                   |    2 
 spatstat-1.40-0/spatstat/R/Gmulti.R                 |    4 
 spatstat-1.40-0/spatstat/R/Jest.R                   |    4 
 spatstat-1.40-0/spatstat/R/Kcom.R                   |   10 
 spatstat-1.40-0/spatstat/R/Kest.R                   |    6 
 spatstat-1.40-0/spatstat/R/Kinhom.R                 |    8 
 spatstat-1.40-0/spatstat/R/Kmeasure.R               |    4 
 spatstat-1.40-0/spatstat/R/Kmulti.R                 |    4 
 spatstat-1.40-0/spatstat/R/Kmulti.inhom.R           |    4 
 spatstat-1.40-0/spatstat/R/Kscaled.R                |    6 
 spatstat-1.40-0/spatstat/R/Ksector.R                |    6 
 spatstat-1.40-0/spatstat/R/Math.im.R                |only
 spatstat-1.40-0/spatstat/R/Tstat.R                  |    2 
 spatstat-1.40-0/spatstat/R/aaaa.R                   |only
 spatstat-1.40-0/spatstat/R/addvar.R                 |    6 
 spatstat-1.40-0/spatstat/R/alltypes.R               |    4 
 spatstat-1.40-0/spatstat/R/anova.ppm.R              |  133 +-
 spatstat-1.40-0/spatstat/R/areainter.R              |   49 +
 spatstat-1.40-0/spatstat/R/badgey.R                 |    4 
 spatstat-1.40-0/spatstat/R/cdftest.R                |   61 -
 spatstat-1.40-0/spatstat/R/centroid.R               |    6 
 spatstat-1.40-0/spatstat/R/circdensity.R            |only
 spatstat-1.40-0/spatstat/R/clarkevans.R             |    3 
 spatstat-1.40-0/spatstat/R/clickppp.R               |   12 
 spatstat-1.40-0/spatstat/R/clip.psp.R               |    4 
 spatstat-1.40-0/spatstat/R/colourtables.R           |   13 
 spatstat-1.40-0/spatstat/R/concom.R                 |    4 
 spatstat-1.40-0/spatstat/R/crossdistlpp.R           |    2 
 spatstat-1.40-0/spatstat/R/density.ppp.R            |   11 
 spatstat-1.40-0/spatstat/R/dg.R                     |   53 -
 spatstat-1.40-0/spatstat/R/dgs.R                    |    2 
 spatstat-1.40-0/spatstat/R/diagnoseppm.R            |   27 
 spatstat-1.40-0/spatstat/R/diagram.R                |only
 spatstat-1.40-0/spatstat/R/distan3D.R               |    3 
 spatstat-1.40-0/spatstat/R/dummy.R                  |    5 
 spatstat-1.40-0/spatstat/R/effectfun.R              |    9 
 spatstat-1.40-0/spatstat/R/envelope.R               |   21 
 spatstat-1.40-0/spatstat/R/envelope3.R              |   25 
 spatstat-1.40-0/spatstat/R/envelopelpp.R            |    3 
 spatstat-1.40-0/spatstat/R/eval.fasp.R              |    6 
 spatstat-1.40-0/spatstat/R/eval.fv.R                |   11 
 spatstat-1.40-0/spatstat/R/eval.im.R                |    4 
 spatstat-1.40-0/spatstat/R/evalcovar.R              |  193 ++--
 spatstat-1.40-0/spatstat/R/exactMPLEstrauss.R       |    4 
 spatstat-1.40-0/spatstat/R/fii.R                    |  120 +-
 spatstat-1.40-0/spatstat/R/fiksel.R                 |   44 
 spatstat-1.40-0/spatstat/R/fitted.mppm.R            |    8 
 spatstat-1.40-0/spatstat/R/fryplot.R                |    3 
 spatstat-1.40-0/spatstat/R/fv.R                     |    6 
 spatstat-1.40-0/spatstat/R/geyer.R                  |   44 
 spatstat-1.40-0/spatstat/R/hardcore.R               |    2 
 spatstat-1.40-0/spatstat/R/hierpair.family.R        |only
 spatstat-1.40-0/spatstat/R/hierstrauss.R            |only
 spatstat-1.40-0/spatstat/R/hybrid.R                 |  479 +++++-----
 spatstat-1.40-0/spatstat/R/hypersub.R               |   11 
 spatstat-1.40-0/spatstat/R/images.R                 |   46 
 spatstat-1.40-0/spatstat/R/intensity.R              |   43 
 spatstat-1.40-0/spatstat/R/interact.R               |   18 
 spatstat-1.40-0/spatstat/R/interactions.R           |   28 
 spatstat-1.40-0/spatstat/R/ippm.R                   |   10 
 spatstat-1.40-0/spatstat/R/kppm.R                   |   26 
 spatstat-1.40-0/spatstat/R/layered.R                |   28 
 spatstat-1.40-0/spatstat/R/lennard.R                |    8 
 spatstat-1.40-0/spatstat/R/linearK.R                |    4 
 spatstat-1.40-0/spatstat/R/linearKmulti.R           |   13 
 spatstat-1.40-0/spatstat/R/lineardisc.R             |    4 
 spatstat-1.40-0/spatstat/R/linearpcf.R              |    9 
 spatstat-1.40-0/spatstat/R/linearpcfmulti.R         |   13 
 spatstat-1.40-0/spatstat/R/linfun.R                 |    4 
 spatstat-1.40-0/spatstat/R/linim.R                  |    4 
 spatstat-1.40-0/spatstat/R/listof.R                 |   80 -
 spatstat-1.40-0/spatstat/R/localpcf.R               |    4 
 spatstat-1.40-0/spatstat/R/logistic.R               |   18 
 spatstat-1.40-0/spatstat/R/lppm.R                   |   29 
 spatstat-1.40-0/spatstat/R/lurking.R                |  117 +-
 spatstat-1.40-0/spatstat/R/markcorr.R               |  435 +++++----
 spatstat-1.40-0/spatstat/R/measures.R               |    3 
 spatstat-1.40-0/spatstat/R/morphology.R             |   26 
 spatstat-1.40-0/spatstat/R/mpl.R                    |   79 +
 spatstat-1.40-0/spatstat/R/mppm.R                   |    6 
 spatstat-1.40-0/spatstat/R/multihard.R              |   26 
 spatstat-1.40-0/spatstat/R/multistrauss.R           |    6 
 spatstat-1.40-0/spatstat/R/multistrhard.R           |   76 +
 spatstat-1.40-0/spatstat/R/nearestsegment.R         |    4 
 spatstat-1.40-0/spatstat/R/nnclean.R                |    5 
 spatstat-1.40-0/spatstat/R/nncorr.R                 |    2 
 spatstat-1.40-0/spatstat/R/nndistlpp.R              |    4 
 spatstat-1.40-0/spatstat/R/nnorient.R               |only
 spatstat-1.40-0/spatstat/R/options.R                |   61 +
 spatstat-1.40-0/spatstat/R/ord.R                    |   34 
 spatstat-1.40-0/spatstat/R/ordthresh.R              |   88 +
 spatstat-1.40-0/spatstat/R/pairdistlpp.R            |    2 
 spatstat-1.40-0/spatstat/R/pairorient.R             |  141 ++-
 spatstat-1.40-0/spatstat/R/pairpiece.R              |    4 
 spatstat-1.40-0/spatstat/R/pairwise.R               |    9 
 spatstat-1.40-0/spatstat/R/pairwise.family.R        |   38 
 spatstat-1.40-0/spatstat/R/parres.R                 |    4 
 spatstat-1.40-0/spatstat/R/pcf.R                    |    4 
 spatstat-1.40-0/spatstat/R/pcfinhom.R               |    4 
 spatstat-1.40-0/spatstat/R/pcfmulti.R               |    8 
 spatstat-1.40-0/spatstat/R/pcfmulti.inhom.R         |    2 
 spatstat-1.40-0/spatstat/R/persp.im.R               |   10 
 spatstat-1.40-0/spatstat/R/plot.anylist.R           |only
 spatstat-1.40-0/spatstat/R/plot.fasp.R              |   11 
 spatstat-1.40-0/spatstat/R/plot.fv.R                |    4 
 spatstat-1.40-0/spatstat/R/plot.im.R                |   13 
 spatstat-1.40-0/spatstat/R/plot.ppm.R               |    9 
 spatstat-1.40-0/spatstat/R/plot.ppp.R               |    8 
 spatstat-1.40-0/spatstat/R/pointsonlines.R          |    4 
 spatstat-1.40-0/spatstat/R/poisson.R                |   53 -
 spatstat-1.40-0/spatstat/R/pp3.R                    |   18 
 spatstat-1.40-0/spatstat/R/ppm.R                    |    6 
 spatstat-1.40-0/spatstat/R/ppmclass.R               |  146 ++-
 spatstat-1.40-0/spatstat/R/ppp.R                    |    4 
 spatstat-1.40-0/spatstat/R/pppmatch.R               |   14 
 spatstat-1.40-0/spatstat/R/ppx.R                    |   25 
 spatstat-1.40-0/spatstat/R/predict.ppm.R            |  339 ++++---
 spatstat-1.40-0/spatstat/R/predictmppm.R            |   23 
 spatstat-1.40-0/spatstat/R/profilepl.R              |  481 ++++++----
 spatstat-1.40-0/spatstat/R/psp.R                    |    5 
 spatstat-1.40-0/spatstat/R/psst.R                   |   28 
 spatstat-1.40-0/spatstat/R/psstA.R                  |    6 
 spatstat-1.40-0/spatstat/R/psstG.R                  |   30 
 spatstat-1.40-0/spatstat/R/quadratcount.R           |    4 
 spatstat-1.40-0/spatstat/R/quadrattest.R            |    9 
 spatstat-1.40-0/spatstat/R/quadscheme.R             |  198 ++--
 spatstat-1.40-0/spatstat/R/rPerfect.R               |  291 +++---
 spatstat-1.40-0/spatstat/R/random.R                 |  925 ++++++++++++--------
 spatstat-1.40-0/spatstat/R/randomNS.R               |  264 +++--
 spatstat-1.40-0/spatstat/R/randomlpp.R              |   26 
 spatstat-1.40-0/spatstat/R/randommk.R               |   55 -
 spatstat-1.40-0/spatstat/R/randomonlines.R          |   47 -
 spatstat-1.40-0/spatstat/R/reduceformula.R          |    2 
 spatstat-1.40-0/spatstat/R/relrisk.R                |  486 +++++++---
 spatstat-1.40-0/spatstat/R/relrisk.ppm.R            |only
 spatstat-1.40-0/spatstat/R/resid4plot.R             |   42 
 spatstat-1.40-0/spatstat/R/residppm.R               |    2 
 spatstat-1.40-0/spatstat/R/residuals.mppm.R         |    2 
 spatstat-1.40-0/spatstat/R/resolve.defaults.R       |    6 
 spatstat-1.40-0/spatstat/R/rho2hat.R                |    4 
 spatstat-1.40-0/spatstat/R/rhohat.R                 |    8 
 spatstat-1.40-0/spatstat/R/rmh.default.R            |   31 
 spatstat-1.40-0/spatstat/R/rmh.ppm.R                |    7 
 spatstat-1.40-0/spatstat/R/rmhmodel.R               |   86 +
 spatstat-1.40-0/spatstat/R/rmhmodel.ppm.R           |   22 
 spatstat-1.40-0/spatstat/R/rose.R                   |only
 spatstat-1.40-0/spatstat/R/satpiece.R               |    4 
 spatstat-1.40-0/spatstat/R/saturated.R              |    8 
 spatstat-1.40-0/spatstat/R/simplepanel.R            |    4 
 spatstat-1.40-0/spatstat/R/slrm.R                   |   22 
 spatstat-1.40-0/spatstat/R/smooth.ppp.R             |   38 
 spatstat-1.40-0/spatstat/R/softcore.R               |    4 
 spatstat-1.40-0/spatstat/R/solist.R                 |    2 
 spatstat-1.40-0/spatstat/R/stienen.R                |   23 
 spatstat-1.40-0/spatstat/R/strauss.R                |    6 
 spatstat-1.40-0/spatstat/R/strausshard.R            |    4 
 spatstat-1.40-0/spatstat/R/subfits.R                |   12 
 spatstat-1.40-0/spatstat/R/summary.im.R             |    4 
 spatstat-1.40-0/spatstat/R/summary.mppm.R           |    4 
 spatstat-1.40-0/spatstat/R/summary.ppm.R            |  100 +-
 spatstat-1.40-0/spatstat/R/superimpose.R            |    4 
 spatstat-1.40-0/spatstat/R/symbolmap.R              |    4 
 spatstat-1.40-0/spatstat/R/terse.R                  |   11 
 spatstat-1.40-0/spatstat/R/tess.R                   |    4 
 spatstat-1.40-0/spatstat/R/texture.R                |    4 
 spatstat-1.40-0/spatstat/R/triplets.R               |    4 
 spatstat-1.40-0/spatstat/R/unique.ppp.R             |    6 
 spatstat-1.40-0/spatstat/R/util.R                   |   10 
 spatstat-1.40-0/spatstat/R/vblogistic.R             |only
 spatstat-1.40-0/spatstat/R/vcov.ppm.R               |   26 
 spatstat-1.40-0/spatstat/R/weights.R                |   20 
 spatstat-1.40-0/spatstat/R/window.R                 |    3 
 spatstat-1.40-0/spatstat/R/wingeom.R                |   27 
 spatstat-1.40-0/spatstat/R/xypolygon.R              |    7 
 spatstat-1.40-0/spatstat/build/vignette.rds         |binary
 spatstat-1.40-0/spatstat/data/Kovesi.rda            |only
 spatstat-1.40-0/spatstat/data/amacrine.rda          |binary
 spatstat-1.40-0/spatstat/data/anemones.rda          |binary
 spatstat-1.40-0/spatstat/data/ants.rda              |binary
 spatstat-1.40-0/spatstat/data/bdspots.rda           |only
 spatstat-1.40-0/spatstat/data/bei.rda               |binary
 spatstat-1.40-0/spatstat/data/betacells.rda         |binary
 spatstat-1.40-0/spatstat/data/bramblecanes.rda      |binary
 spatstat-1.40-0/spatstat/data/bronzefilter.rda      |binary
 spatstat-1.40-0/spatstat/data/cells.rda             |binary
 spatstat-1.40-0/spatstat/data/chicago.rda           |binary
 spatstat-1.40-0/spatstat/data/chorley.rda           |binary
 spatstat-1.40-0/spatstat/data/clmfires.rda          |binary
 spatstat-1.40-0/spatstat/data/copper.rda            |binary
 spatstat-1.40-0/spatstat/data/datalist              |    2 
 spatstat-1.40-0/spatstat/data/demohyper.rda         |binary
 spatstat-1.40-0/spatstat/data/demopat.rda           |binary
 spatstat-1.40-0/spatstat/data/finpines.rda          |binary
 spatstat-1.40-0/spatstat/data/flu.rda               |binary
 spatstat-1.40-0/spatstat/data/ganglia.rda           |binary
 spatstat-1.40-0/spatstat/data/gordon.rda            |binary
 spatstat-1.40-0/spatstat/data/gorillas.rda          |binary
 spatstat-1.40-0/spatstat/data/hamster.rda           |binary
 spatstat-1.40-0/spatstat/data/heather.rda           |binary
 spatstat-1.40-0/spatstat/data/humberside.rda        |binary
 spatstat-1.40-0/spatstat/data/hyytiala.rda          |binary
 spatstat-1.40-0/spatstat/data/japanesepines.rda     |binary
 spatstat-1.40-0/spatstat/data/lansing.rda           |binary
 spatstat-1.40-0/spatstat/data/letterR.rda           |binary
 spatstat-1.40-0/spatstat/data/longleaf.rda          |binary
 spatstat-1.40-0/spatstat/data/mucosa.rda            |binary
 spatstat-1.40-0/spatstat/data/murchison.rda         |binary
 spatstat-1.40-0/spatstat/data/nbfires.rda           |binary
 spatstat-1.40-0/spatstat/data/nztrees.rda           |binary
 spatstat-1.40-0/spatstat/data/osteo.rda             |binary
 spatstat-1.40-0/spatstat/data/paracou.rda           |binary
 spatstat-1.40-0/spatstat/data/ponderosa.rda         |binary
 spatstat-1.40-0/spatstat/data/pyramidal.rda         |binary
 spatstat-1.40-0/spatstat/data/redwood.rda           |binary
 spatstat-1.40-0/spatstat/data/redwoodfull.rda       |binary
 spatstat-1.40-0/spatstat/data/residualspaper.rda    |binary
 spatstat-1.40-0/spatstat/data/shapley.rda           |binary
 spatstat-1.40-0/spatstat/data/simba.rda             |binary
 spatstat-1.40-0/spatstat/data/simdat.rda            |binary
 spatstat-1.40-0/spatstat/data/simplenet.rda         |binary
 spatstat-1.40-0/spatstat/data/sporophores.rda       |binary
 spatstat-1.40-0/spatstat/data/spruces.rda           |binary
 spatstat-1.40-0/spatstat/data/swedishpines.rda      |binary
 spatstat-1.40-0/spatstat/data/urkiola.rda           |binary
 spatstat-1.40-0/spatstat/data/vesicles.rda          |binary
 spatstat-1.40-0/spatstat/data/waka.rda              |binary
 spatstat-1.40-0/spatstat/data/waterstriders.rda     |binary
 spatstat-1.40-0/spatstat/demo/data.R                |    2 
 spatstat-1.40-0/spatstat/inst/doc/datasets.R        |only
 spatstat-1.40-0/spatstat/inst/doc/datasets.Rnw      |only
 spatstat-1.40-0/spatstat/inst/doc/datasets.pdf      |only
 spatstat-1.40-0/spatstat/inst/doc/getstart.pdf      |binary
 spatstat-1.40-0/spatstat/inst/doc/replicated.pdf    |binary
 spatstat-1.40-0/spatstat/inst/doc/shapefiles.pdf    |binary
 spatstat-1.40-0/spatstat/inst/doc/updates.R         |    4 
 spatstat-1.40-0/spatstat/inst/doc/updates.Rnw       |   22 
 spatstat-1.40-0/spatstat/inst/doc/updates.pdf       |binary
 spatstat-1.40-0/spatstat/inst/rawdata/gorillas      |only
 spatstat-1.40-0/spatstat/man/DiggleGratton.Rd       |   11 
 spatstat-1.40-0/spatstat/man/Extract.layered.Rd     |   26 
 spatstat-1.40-0/spatstat/man/Fiksel.Rd              |   10 
 spatstat-1.40-0/spatstat/man/Gcom.Rd                |    4 
 spatstat-1.40-0/spatstat/man/HierStrauss.Rd         |only
 spatstat-1.40-0/spatstat/man/Kovesi.Rd              |only
 spatstat-1.40-0/spatstat/man/Math.im.Rd             |only
 spatstat-1.40-0/spatstat/man/Triplets.Rd            |    5 
 spatstat-1.40-0/spatstat/man/anova.ppm.Rd           |    6 
 spatstat-1.40-0/spatstat/man/bdspots.Rd             |only
 spatstat-1.40-0/spatstat/man/cdf.test.Rd            |   57 -
 spatstat-1.40-0/spatstat/man/circdensity.Rd         |only
 spatstat-1.40-0/spatstat/man/colourtools.Rd         |   11 
 spatstat-1.40-0/spatstat/man/connected.ppp.Rd       |    6 
 spatstat-1.40-0/spatstat/man/contour.imlist.Rd      |only
 spatstat-1.40-0/spatstat/man/diagnose.ppm.Rd        |   10 
 spatstat-1.40-0/spatstat/man/duplicated.ppp.Rd      |   19 
 spatstat-1.40-0/spatstat/man/fitin.Rd               |    7 
 spatstat-1.40-0/spatstat/man/gorillas.Rd            |   12 
 spatstat-1.40-0/spatstat/man/hierpair.family.Rd     |only
 spatstat-1.40-0/spatstat/man/integral.im.Rd         |    8 
 spatstat-1.40-0/spatstat/man/logLik.ppm.Rd          |   51 -
 spatstat-1.40-0/spatstat/man/lurking.Rd             |   27 
 spatstat-1.40-0/spatstat/man/methods.linfun.Rd      |    2 
 spatstat-1.40-0/spatstat/man/model.images.Rd        |   40 
 spatstat-1.40-0/spatstat/man/model.matrix.ppm.Rd    |   21 
 spatstat-1.40-0/spatstat/man/nnorient.Rd            |only
 spatstat-1.40-0/spatstat/man/pairorient.Rd          |   62 -
 spatstat-1.40-0/spatstat/man/plot.fasp.Rd           |    4 
 spatstat-1.40-0/spatstat/man/plot.imlist.Rd         |only
 spatstat-1.40-0/spatstat/man/plot.onearrow.Rd       |only
 spatstat-1.40-0/spatstat/man/plot.textstring.Rd     |only
 spatstat-1.40-0/spatstat/man/plot.yardstick.Rd      |only
 spatstat-1.40-0/spatstat/man/predict.ppm.Rd         |   96 +-
 spatstat-1.40-0/spatstat/man/profilepl.Rd           |   36 
 spatstat-1.40-0/spatstat/man/rCauchy.Rd             |    6 
 spatstat-1.40-0/spatstat/man/rDGS.Rd                |    6 
 spatstat-1.40-0/spatstat/man/rDiggleGratton.Rd      |    6 
 spatstat-1.40-0/spatstat/man/rGaussPoisson.Rd       |    9 
 spatstat-1.40-0/spatstat/man/rHardcore.Rd           |    6 
 spatstat-1.40-0/spatstat/man/rMatClust.Rd           |    6 
 spatstat-1.40-0/spatstat/man/rMaternI.Rd            |   10 
 spatstat-1.40-0/spatstat/man/rMaternII.Rd           |   13 
 spatstat-1.40-0/spatstat/man/rNeymanScott.Rd        |    7 
 spatstat-1.40-0/spatstat/man/rPoissonCluster.Rd     |    9 
 spatstat-1.40-0/spatstat/man/rSSI.Rd                |    9 
 spatstat-1.40-0/spatstat/man/rStrauss.Rd            |    6 
 spatstat-1.40-0/spatstat/man/rStraussHard.Rd        |    6 
 spatstat-1.40-0/spatstat/man/rThomas.Rd             |    6 
 spatstat-1.40-0/spatstat/man/rVarGamma.Rd           |   16 
 spatstat-1.40-0/spatstat/man/rcell.Rd               |    6 
 spatstat-1.40-0/spatstat/man/relrisk.Rd             |  165 ---
 spatstat-1.40-0/spatstat/man/relrisk.ppm.Rd         |only
 spatstat-1.40-0/spatstat/man/relrisk.ppp.Rd         |only
 spatstat-1.40-0/spatstat/man/rjitter.Rd             |   13 
 spatstat-1.40-0/spatstat/man/rmh.ppm.Rd             |    5 
 spatstat-1.40-0/spatstat/man/rmhmodel.ppm.Rd        |    6 
 spatstat-1.40-0/spatstat/man/rmpoint.Rd             |    7 
 spatstat-1.40-0/spatstat/man/rmpoispp.Rd            |    9 
 spatstat-1.40-0/spatstat/man/rose.Rd                |only
 spatstat-1.40-0/spatstat/man/rpoint.Rd              |    8 
 spatstat-1.40-0/spatstat/man/rpoislpp.Rd            |    6 
 spatstat-1.40-0/spatstat/man/rpoispp.Rd             |    6 
 spatstat-1.40-0/spatstat/man/rpoispp3.Rd            |   12 
 spatstat-1.40-0/spatstat/man/rpoisppOnLines.Rd      |    8 
 spatstat-1.40-0/spatstat/man/rpoisppx.Rd            |   11 
 spatstat-1.40-0/spatstat/man/rstrat.Rd              |    6 
 spatstat-1.40-0/spatstat/man/rsyst.Rd               |    6 
 spatstat-1.40-0/spatstat/man/rthin.Rd               |   10 
 spatstat-1.40-0/spatstat/man/runifdisc.Rd           |    6 
 spatstat-1.40-0/spatstat/man/runiflpp.Rd            |    6 
 spatstat-1.40-0/spatstat/man/runifpoint.Rd          |    7 
 spatstat-1.40-0/spatstat/man/runifpoint3.Rd         |    7 
 spatstat-1.40-0/spatstat/man/runifpointOnLines.Rd   |    7 
 spatstat-1.40-0/spatstat/man/runifpointx.Rd         |    8 
 spatstat-1.40-0/spatstat/man/spatstat-internal.Rd   |   93 +-
 spatstat-1.40-0/spatstat/man/spatstat-package.Rd    |    8 
 spatstat-1.40-0/spatstat/man/spatstat.options.Rd    |   15 
 spatstat-1.40-0/spatstat/man/valid.ppm.Rd           |    9 
 spatstat-1.40-0/spatstat/man/vcov.ppm.Rd            |    6 
 spatstat-1.40-0/spatstat/man/vesicles.Rd            |    1 
 spatstat-1.40-0/spatstat/man/yardstick.Rd           |only
 spatstat-1.40-0/spatstat/src/methas.c               |   16 
 spatstat-1.40-0/spatstat/src/mhloop.h               |   79 +
 spatstat-1.40-0/spatstat/src/straush.c              |   14 
 spatstat-1.40-0/spatstat/tests/alltests.R           |  121 ++
 spatstat-1.40-0/spatstat/vignettes/datasets.Rnw     |only
 spatstat-1.40-0/spatstat/vignettes/hexagon.eps      |only
 spatstat-1.40-0/spatstat/vignettes/hexagon.pdf      |only
 spatstat-1.40-0/spatstat/vignettes/irregpoly.eps    |only
 spatstat-1.40-0/spatstat/vignettes/irregpoly.pdf    |only
 spatstat-1.40-0/spatstat/vignettes/packagesizes.txt |    1 
 spatstat-1.40-0/spatstat/vignettes/updates.Rnw      |   22 
 339 files changed, 6176 insertions(+), 3486 deletions(-)

More information about spatstat at CRAN
Permanent link

Package digest updated to version 0.6.8 with previous version 0.6.7 dated 2014-12-20

Title: Create Cryptographic Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the md5, sha-1, sha-256, crc32, xxhash and murmurhash algorithms) permitting easy comparison of R language objects, as well as a function 'hmac()' to create hash-based message authentication code. The md5 algorithm by Ron Rivest is specified in RFC 1321, the sha-1 and sha-256 algorithms are specified in FIPS-180-1 and FIPS-180-2, and the crc32 algorithm is described in ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For md5, sha-1, sha-256 and aes, this package uses small standalone implementations that were provided by Christophe Devine. For crc32, code from the zlib library is used. For sha-512, an implementation by Aaron D. Gifford is used. For xxHash, the implementation by Yann Collet is used. For murmurhash, an implementation by Shane Day is used. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as OpenSSL should be used.
Author: Dirk Eddelbuettel with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen, Duncan Murdoch, Jim Hester and Wush Wu.
Maintainer: Dirk Eddelbuettel

Diff between digest versions 0.6.7 dated 2014-12-20 and 0.6.8 dated 2014-12-31

 ChangeLog      |   27 +++++++++++++++++++++++++++
 DESCRIPTION    |   12 ++++++------
 MD5            |   10 ++++++----
 README.md      |   32 ++++++++++++++++----------------
 inst/include   |only
 src/init.c     |only
 src/pmurhash.c |   23 +++++++++++++++++++++++
 7 files changed, 78 insertions(+), 26 deletions(-)

More information about digest at CRAN
Permanent link

New package FeaLect with initial version 1.7
Package: FeaLect
Type: Package
Title: Scores Features for Feature Selection
Version: 1.7
Date: 2014-12-03
Author: Habil Zare
Maintainer: Habil Zare
Depends: lars, rms
Description: For each feature, a score is computed that can be useful for feature selection. Several random subsets are sampled from the input data and for each random subset, various linear models are fitted using lars method. A score is assigned to each feature based on the tendency of LASSO in including that feature in the models.Finally, the average score and the models are returned as the output. The features with relatively low scores are recommended to be ignored because they can lead to overfitting of the model to the training data. Moreover, for each random subset, the best set of features in terms of global error is returned. They are useful for applying Bolasso, the alternative feature selection method that recommends the intersection of features subsets.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Date/Publication: 2014-12-31 05:47:23
Packaged: 2014-12-30 16:55:55 UTC; habil
NeedsCompilation: no

More information about FeaLect at CRAN
Permanent link