Title: Boost C++ Header Files
Diff between BH versions 1.55.0-2 dated 2015-01-04 and 1.55.0-3 dated 2015-01-05
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN package. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel
ChangeLog | 7
DESCRIPTION | 8
MD5 | 400 +++++++++-
README.md | 24
inst/NEWS.Rd | 6
inst/include/boost/bimap |only
inst/include/boost/bimap.hpp |only
inst/include/boost/function_types/member_function_pointer.hpp |only
inst/include/boost/graph/adj_list_serialize.hpp |only
inst/include/boost/graph/adjacency_list_io.hpp |only
inst/include/boost/graph/adjacency_matrix.hpp |only
inst/include/boost/graph/astar_search.hpp |only
inst/include/boost/graph/bandwidth.hpp |only
inst/include/boost/graph/bc_clustering.hpp |only
inst/include/boost/graph/bellman_ford_shortest_paths.hpp |only
inst/include/boost/graph/betweenness_centrality.hpp |only
inst/include/boost/graph/biconnected_components.hpp |only
inst/include/boost/graph/bipartite.hpp |only
inst/include/boost/graph/boyer_myrvold_planar_test.hpp |only
inst/include/boost/graph/boykov_kolmogorov_max_flow.hpp |only
inst/include/boost/graph/bron_kerbosch_all_cliques.hpp |only
inst/include/boost/graph/chrobak_payne_drawing.hpp |only
inst/include/boost/graph/circle_layout.hpp |only
inst/include/boost/graph/closeness_centrality.hpp |only
inst/include/boost/graph/clustering_coefficient.hpp |only
inst/include/boost/graph/compressed_sparse_row_graph.hpp |only
inst/include/boost/graph/connected_components.hpp |only
inst/include/boost/graph/copy.hpp |only
inst/include/boost/graph/core_numbers.hpp |only
inst/include/boost/graph/create_condensation_graph.hpp |only
inst/include/boost/graph/cuthill_mckee_ordering.hpp |only
inst/include/boost/graph/cycle_canceling.hpp |only
inst/include/boost/graph/dag_shortest_paths.hpp |only
inst/include/boost/graph/degree_centrality.hpp |only
inst/include/boost/graph/depth_first_search.hpp |only
inst/include/boost/graph/detail/augment.hpp |only
inst/include/boost/graph/detail/compressed_sparse_row_struct.hpp |only
inst/include/boost/graph/detail/connected_components.hpp |only
inst/include/boost/graph/detail/geodesic.hpp |only
inst/include/boost/graph/detail/histogram_sort.hpp |only
inst/include/boost/graph/detail/incidence_iterator.hpp |only
inst/include/boost/graph/detail/incremental_components.hpp |only
inst/include/boost/graph/detail/index.hpp |only
inst/include/boost/graph/detail/indexed_properties.hpp |only
inst/include/boost/graph/detail/is_distributed_selector.hpp |only
inst/include/boost/graph/detail/labeled_graph_traits.hpp |only
inst/include/boost/graph/detail/list_base.hpp |only
inst/include/boost/graph/detail/permutation.hpp |only
inst/include/boost/graph/detail/read_graphviz_new.hpp |only
inst/include/boost/graph/detail/read_graphviz_spirit.hpp |only
inst/include/boost/graph/detail/self_avoiding_walk.hpp |only
inst/include/boost/graph/detail/set_adaptor.hpp |only
inst/include/boost/graph/detail/shadow_iterator.hpp |only
inst/include/boost/graph/detail/sparse_ordering.hpp |only
inst/include/boost/graph/dijkstra_shortest_paths_no_color_map.hpp |only
inst/include/boost/graph/dimacs.hpp |only
inst/include/boost/graph/directed_graph.hpp |only
inst/include/boost/graph/distributed/adjacency_list.hpp |only
inst/include/boost/graph/distributed/adjlist |only
inst/include/boost/graph/distributed/betweenness_centrality.hpp |only
inst/include/boost/graph/distributed/boman_et_al_graph_coloring.hpp |only
inst/include/boost/graph/distributed/compressed_sparse_row_graph.hpp |only
inst/include/boost/graph/distributed/connected_components.hpp |only
inst/include/boost/graph/distributed/connected_components_parallel_search.hpp |only
inst/include/boost/graph/distributed/dehne_gotz_min_spanning_tree.hpp |only
inst/include/boost/graph/distributed/delta_stepping_shortest_paths.hpp |only
inst/include/boost/graph/distributed/depth_first_search.hpp |only
inst/include/boost/graph/distributed/detail/mpi_process_group.ipp |only
inst/include/boost/graph/distributed/detail/tag_allocator.hpp |only
inst/include/boost/graph/distributed/distributed_graph_utility.hpp |only
inst/include/boost/graph/distributed/filtered_graph.hpp |only
inst/include/boost/graph/distributed/fruchterman_reingold.hpp |only
inst/include/boost/graph/distributed/graphviz.hpp |only
inst/include/boost/graph/distributed/hohberg_biconnected_components.hpp |only
inst/include/boost/graph/distributed/local_subgraph.hpp |only
inst/include/boost/graph/distributed/mpi_process_group.hpp |only
inst/include/boost/graph/distributed/named_graph.hpp |only
inst/include/boost/graph/distributed/one_bit_color_map.hpp |only
inst/include/boost/graph/distributed/page_rank.hpp |only
inst/include/boost/graph/distributed/reverse_graph.hpp |only
inst/include/boost/graph/distributed/rmat_graph_generator.hpp |only
inst/include/boost/graph/distributed/selector.hpp |only
inst/include/boost/graph/distributed/shuffled_distribution.hpp |only
inst/include/boost/graph/distributed/st_connected.hpp |only
inst/include/boost/graph/distributed/strong_components.hpp |only
inst/include/boost/graph/distributed/vertex_list_adaptor.hpp |only
inst/include/boost/graph/dll_import_export.hpp |only
inst/include/boost/graph/dominator_tree.hpp |only
inst/include/boost/graph/eccentricity.hpp |only
inst/include/boost/graph/edge_coloring.hpp |only
inst/include/boost/graph/edge_connectivity.hpp |only
inst/include/boost/graph/edge_list.hpp |only
inst/include/boost/graph/edmonds_karp_max_flow.hpp |only
inst/include/boost/graph/edmunds_karp_max_flow.hpp |only
inst/include/boost/graph/erdos_renyi_generator.hpp |only
inst/include/boost/graph/exterior_property.hpp |only
inst/include/boost/graph/filtered_graph.hpp |only
inst/include/boost/graph/find_flow_cost.hpp |only
inst/include/boost/graph/floyd_warshall_shortest.hpp |only
inst/include/boost/graph/fruchterman_reingold.hpp |only
inst/include/boost/graph/geodesic_distance.hpp |only
inst/include/boost/graph/graph_archetypes.hpp |only
inst/include/boost/graph/graph_as_tree.hpp |only
inst/include/boost/graph/graph_stats.hpp |only
inst/include/boost/graph/graph_test.hpp |only
inst/include/boost/graph/graph_utility.hpp |only
inst/include/boost/graph/graphml.hpp |only
inst/include/boost/graph/graphviz.hpp |only
inst/include/boost/graph/grid_graph.hpp |only
inst/include/boost/graph/gursoy_atun_layout.hpp |only
inst/include/boost/graph/hawick_circuits.hpp |only
inst/include/boost/graph/howard_cycle_ratio.hpp |only
inst/include/boost/graph/incremental_components.hpp |only
inst/include/boost/graph/is_kuratowski_subgraph.hpp |only
inst/include/boost/graph/is_straight_line_drawing.hpp |only
inst/include/boost/graph/isomorphism.hpp |only
inst/include/boost/graph/iteration_macros_undef.hpp |only
inst/include/boost/graph/johnson_all_pairs_shortest.hpp |only
inst/include/boost/graph/kamada_kawai_spring_layout.hpp |only
inst/include/boost/graph/king_ordering.hpp |only
inst/include/boost/graph/kruskal_min_spanning_tree.hpp |only
inst/include/boost/graph/labeled_graph.hpp |only
inst/include/boost/graph/leda_graph.hpp |only
inst/include/boost/graph/lookup_edge.hpp |only
inst/include/boost/graph/loop_erased_random_walk.hpp |only
inst/include/boost/graph/make_biconnected_planar.hpp |only
inst/include/boost/graph/make_connected.hpp |only
inst/include/boost/graph/make_maximal_planar.hpp |only
inst/include/boost/graph/matrix_as_graph.hpp |only
inst/include/boost/graph/max_cardinality_matching.hpp |only
inst/include/boost/graph/maximum_adjacency_search.hpp |only
inst/include/boost/graph/mcgregor_common_subgraphs.hpp |only
inst/include/boost/graph/mesh_graph_generator.hpp |only
inst/include/boost/graph/metis.hpp |only
inst/include/boost/graph/metric_tsp_approx.hpp |only
inst/include/boost/graph/minimum_degree_ordering.hpp |only
inst/include/boost/graph/neighbor_bfs.hpp |only
inst/include/boost/graph/one_bit_color_map.hpp |only
inst/include/boost/graph/page_rank.hpp |only
inst/include/boost/graph/parallel/detail/property_holders.hpp |only
inst/include/boost/graph/parallel/distribution.hpp |only
inst/include/boost/graph/planar_canonical_ordering.hpp |only
inst/include/boost/graph/planar_detail |only
inst/include/boost/graph/planar_face_traversal.hpp |only
inst/include/boost/graph/plod_generator.hpp |only
inst/include/boost/graph/point_traits.hpp |only
inst/include/boost/graph/prim_minimum_spanning_tree.hpp |only
inst/include/boost/graph/profile.hpp |only
inst/include/boost/graph/property_iter_range.hpp |only
inst/include/boost/graph/property_maps/container_property_map.hpp |only
inst/include/boost/graph/property_maps/matrix_property_map.hpp |only
inst/include/boost/graph/push_relabel_max_flow.hpp |only
inst/include/boost/graph/r_c_shortest_paths.hpp |only
inst/include/boost/graph/random.hpp |only
inst/include/boost/graph/random_layout.hpp |only
inst/include/boost/graph/random_spanning_tree.hpp |only
inst/include/boost/graph/read_dimacs.hpp |only
inst/include/boost/graph/rmat_graph_generator.hpp |only
inst/include/boost/graph/sequential_vertex_coloring.hpp |only
inst/include/boost/graph/simple_point.hpp |only
inst/include/boost/graph/sloan_ordering.hpp |only
inst/include/boost/graph/small_world_generator.hpp |only
inst/include/boost/graph/smallest_last_ordering.hpp |only
inst/include/boost/graph/ssca_graph_generator.hpp |only
inst/include/boost/graph/st_connected.hpp |only
inst/include/boost/graph/stanford_graph.hpp |only
inst/include/boost/graph/stoer_wagner_min_cut.hpp |only
inst/include/boost/graph/strong_components.hpp |only
inst/include/boost/graph/subgraph.hpp |only
inst/include/boost/graph/successive_shortest_path_nonnegative_weights.hpp |only
inst/include/boost/graph/tiernan_all_cycles.hpp |only
inst/include/boost/graph/topological_sort.hpp |only
inst/include/boost/graph/topology.hpp |only
inst/include/boost/graph/transitive_closure.hpp |only
inst/include/boost/graph/transitive_reduction.hpp |only
inst/include/boost/graph/transpose_graph.hpp |only
inst/include/boost/graph/tree_traits.hpp |only
inst/include/boost/graph/two_graphs_common_spanning_trees.hpp |only
inst/include/boost/graph/undirected_dfs.hpp |only
inst/include/boost/graph/undirected_graph.hpp |only
inst/include/boost/graph/use_mpi.hpp |only
inst/include/boost/graph/vector_as_graph.hpp |only
inst/include/boost/graph/vertex_and_edge_range.hpp |only
inst/include/boost/graph/vf2_sub_graph_iso.hpp |only
inst/include/boost/graph/wavefront.hpp |only
inst/include/boost/graph/write_dimacs.hpp |only
inst/include/boost/optional/optional_io.hpp |only
inst/include/boost/property_map/dynamic_property_map.hpp |only
inst/include/boost/property_map/function_property_map.hpp |only
inst/include/boost/property_map/parallel/global_index_map.hpp |only
inst/include/boost/property_map/transform_value_property_map.hpp |only
inst/include/boost/property_tree |only
inst/include/boost/tti |only
inst/include/boost/tuple/tuple_io.hpp |only
inst/include/boost/xpressive |only
man/BH-package.Rd | 4
196 files changed, 427 insertions(+), 22 deletions(-)
Title: Database Interface and MySQL Driver for R
Diff between RMySQL versions 0.9-3 dated 2012-01-17 and 0.10 dated 2015-01-05
Description: Implements DBI-compliant Interface to MySQL and MariaDB Databases.
Author: Jeroen Ooms [aut, cre],
David A. James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms
RMySQL-0.10/RMySQL/DESCRIPTION | 48
RMySQL-0.10/RMySQL/MD5 | 123
RMySQL-0.10/RMySQL/NAMESPACE | 204
RMySQL-0.10/RMySQL/R/connection.R |only
RMySQL-0.10/RMySQL/R/data-type.R |only
RMySQL-0.10/RMySQL/R/default.R |only
RMySQL-0.10/RMySQL/R/driver.R |only
RMySQL-0.10/RMySQL/R/escaping.R |only
RMySQL-0.10/RMySQL/R/extension.R |only
RMySQL-0.10/RMySQL/R/is-valid.R |only
RMySQL-0.10/RMySQL/R/mysql.R |only
RMySQL-0.10/RMySQL/R/result.R |only
RMySQL-0.10/RMySQL/R/table.R |only
RMySQL-0.10/RMySQL/R/transaction.R |only
RMySQL-0.10/RMySQL/R/zzz_compatibility.R |only
RMySQL-0.10/RMySQL/README.md |only
RMySQL-0.10/RMySQL/configure | 4422 ----------
RMySQL-0.10/RMySQL/configure.win | 20
RMySQL-0.10/RMySQL/man/MySQLConnection-class.Rd | 73
RMySQL-0.10/RMySQL/man/MySQLDriver-class.Rd | 95
RMySQL-0.10/RMySQL/man/MySQLResult-class.Rd | 67
RMySQL-0.10/RMySQL/man/constants.Rd |only
RMySQL-0.10/RMySQL/man/db-meta.Rd |only
RMySQL-0.10/RMySQL/man/dbApply.Rd | 117
RMySQL-0.10/RMySQL/man/dbColumnInfo-MySQLConnection-method.Rd |only
RMySQL-0.10/RMySQL/man/dbConnect-MySQLDriver-method.Rd |only
RMySQL-0.10/RMySQL/man/dbDataType-MySQLDriver-method.Rd |only
RMySQL-0.10/RMySQL/man/dbEscapeStrings.Rd | 51
RMySQL-0.10/RMySQL/man/dbGetInfo-MySQLDriver-method.Rd |only
RMySQL-0.10/RMySQL/man/dbNextResult.Rd | 87
RMySQL-0.10/RMySQL/man/dbQuoteIdentifier-MySQLConnection-character-method.Rd |only
RMySQL-0.10/RMySQL/man/dbReadTable.Rd |only
RMySQL-0.10/RMySQL/man/dbUnloadDriver-MySQLDriver-method.Rd |only
RMySQL-0.10/RMySQL/man/dbWriteTable.Rd |only
RMySQL-0.10/RMySQL/man/isIdCurrent.Rd | 64
RMySQL-0.10/RMySQL/man/make.db.names-MySQLConnection-character-method.Rd |only
RMySQL-0.10/RMySQL/man/mysqlBuildTableDefinition.Rd |only
RMySQL-0.10/RMySQL/man/mysqlClientLibraryVersions.Rd | 21
RMySQL-0.10/RMySQL/man/mysqlHasDefault.Rd |only
RMySQL-0.10/RMySQL/man/query.Rd |only
RMySQL-0.10/RMySQL/man/result-meta.Rd |only
RMySQL-0.10/RMySQL/man/transactions.Rd |only
RMySQL-0.10/RMySQL/src/Makevars.win |only
RMySQL-0.10/RMySQL/src/RMySQL-init.c |only
RMySQL-0.10/RMySQL/src/RS-MySQL.h | 266
RMySQL-0.10/RMySQL/src/S4R.h | 169
RMySQL-0.10/RMySQL/src/connection.c |only
RMySQL-0.10/RMySQL/src/db-apply.c |only
RMySQL-0.10/RMySQL/src/driver.c |only
RMySQL-0.10/RMySQL/src/exception.c |only
RMySQL-0.10/RMySQL/src/fields.c |only
RMySQL-0.10/RMySQL/src/result.c |only
RMySQL-0.10/RMySQL/src/utils.c |only
RMySQL-0.10/RMySQL/tests/testthat |only
RMySQL-0.10/RMySQL/tests/testthat.R |only
RMySQL-0.10/RMySQL/tools |only
RMySQL-0.9-3/RMySQL/R/MySQL.R |only
RMySQL-0.9-3/RMySQL/R/MySQLSupport.R |only
RMySQL-0.9-3/RMySQL/R/S4R.R |only
RMySQL-0.9-3/RMySQL/R/dbObjectId.R |only
RMySQL-0.9-3/RMySQL/R/zzz.R |only
RMySQL-0.9-3/RMySQL/configure.in |only
RMySQL-0.9-3/RMySQL/inst |only
RMySQL-0.9-3/RMySQL/man/MySQL.Rd |only
RMySQL-0.9-3/RMySQL/man/MySQLObject-class.Rd |only
RMySQL-0.9-3/RMySQL/man/RMySQL-package.Rd |only
RMySQL-0.9-3/RMySQL/man/S4R.Rd |only
RMySQL-0.9-3/RMySQL/man/dbApply-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbBuildTableDefinition.Rd |only
RMySQL-0.9-3/RMySQL/man/dbCallProc-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbCommit-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbConnect-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbDataType-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbDriver-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbEscapeStrings-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbGetInfo-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbListTables-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbNextResult-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbObjectId-class.Rd |only
RMySQL-0.9-3/RMySQL/man/dbReadTable-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbSendQuery-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/dbSetDataMappings-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/fetch-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/make.db.names-methods.Rd |only
RMySQL-0.9-3/RMySQL/man/mysqlDBApply.Rd |only
RMySQL-0.9-3/RMySQL/man/mysqlSupport.Rd |only
RMySQL-0.9-3/RMySQL/man/safe.write.Rd |only
RMySQL-0.9-3/RMySQL/man/summary-methods.Rd |only
RMySQL-0.9-3/RMySQL/src/Makevars.in |only
RMySQL-0.9-3/RMySQL/src/Makevars.win32 |only
RMySQL-0.9-3/RMySQL/src/Makevars.win64 |only
RMySQL-0.9-3/RMySQL/src/RS-DBI.c |only
RMySQL-0.9-3/RMySQL/src/RS-DBI.h |only
RMySQL-0.9-3/RMySQL/src/RS-MySQL.c |only
RMySQL-0.9-3/RMySQL/tests/tests.R |only
RMySQL-0.9-3/RMySQL/tests/tests.Rout.save |only
96 files changed, 656 insertions(+), 5171 deletions(-)
Title: Collection of Configurable GTK+ Menus
Diff between MenuCollection versions 1.0 dated 2014-12-17 and 1.1 dated 2015-01-05
More information about MenuCollection at CRAN
Description: Set of configurable menus built with GTK+ to graphically interface new functions.
Author: Gianmarco Polotti
Maintainer: Gianmarco Polotti
DESCRIPTION | 6 -
MD5 | 206 +++++++++++++++++++++---------------------
R/menucollection.r | 18 +--
man/dovc.Rd | 2
man/figures/inpboxc.png |binary
man/figures/inpboxc2.png |binary
man/figures/inpboxc2k.png |binary
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man/figures/messagebox.png |binary
man/figures/messageyesno.png |binary
man/givedim.Rd | 2
man/givemat.Rd | 5 -
man/inpboxc.Rd | 3
man/inpboxc2.Rd | 3
man/inpboxc2k.Rd | 3
man/inpboxck.Rd | 3
man/inpboxcke.Rd | 3
man/inpboxcr2.Rd | 3
man/inpboxcr3.Rd | 3
man/inpboxcr4.Rd | 3
man/inpboxe1.Rd | 3
man/inpboxe2.Rd | 3
man/inpboxe2c.Rd | 3
man/inpboxe2k.Rd | 3
man/inpboxe2k2.Rd | 3
man/inpboxe2r2.Rd | 3
man/inpboxe3.Rd | 3
man/inpboxe3c.Rd | 3
man/inpboxe3ce.Rd | 3
man/inpboxe3k.Rd | 3
man/inpboxe3k2.Rd | 3
man/inpboxe3k3.Rd | 3
man/inpboxe4.Rd | 3
man/inpboxe4c2.Rd | 3
man/inpboxe4c2k.Rd | 3
man/inpboxe4cek2.Rd | 3
man/inpboxe4ck.Rd | 3
man/inpboxe4k.Rd | 3
man/inpboxe4k2.Rd | 3
man/inpboxe4k3.Rd | 3
man/inpboxe4r2.Rd | 3
man/inpboxe5.Rd | 3
man/inpboxe5k2.Rd | 4
man/inpboxe5k3.Rd | 3
man/inpboxe6k2.Rd | 4
man/inpboxe6k3.Rd | 3
man/inpboxe6r2.Rd | 3
man/inpboxe7k2.Rd | 3
man/inpboxe7r2.Rd | 3
man/inpboxe8r2.Rd | 3
man/inpboxec.Rd | 3
man/inpboxecece.Rd | 3
man/inpboxek2.Rd | 3
man/inpboxer3.Rd | 3
man/inpboxk6.Rd | 3
man/inpboxk6k6e6.Rd | 11 +-
man/inpboxk7k7.Rd | 11 +-
man/inpboxlist.Rd | 3
man/inpboxr2.Rd | 3
man/menucollection-package.Rd | 8 -
man/messabox.Rd | 3
man/messayesno.Rd | 3
104 files changed, 231 insertions(+), 181 deletions(-)
Permanent link
Title: Utilities for Producing Maps
Diff between mapmisc versions 1.0.0 dated 2014-09-17 and 1.1.1 dated 2015-01-05
Description: This package contains various utilities for producing nice looking maps in R.
Author: Patrick Brown
Maintainer: Patrick Brown
DESCRIPTION | 14 -
MD5 | 50 ++---
NAMESPACE | 2
R/colourScale.R | 420 ++++++++++++++++++++++++++++-------------------
R/geonames.R | 7
R/getTiles.R | 32 ++-
R/insetMap.R | 34 +--
R/openmap.R | 36 ++--
build/vignette.rds |binary
data/netherlands.RData |binary
inst/doc/mapLayers.R | 6
inst/doc/mapLayers.pdf |binary
inst/doc/mapLayers.rnw | 6
inst/doc/mapmisc.R | 6
inst/doc/mapmisc.pdf |binary
inst/doc/mapmisc.rnw | 6
inst/extdata/tiles.RData |binary
man/colourScale.Rd | 3
man/geonames.Rd | 2
man/netherlands.Rd | 18 +-
man/openmap.Rd | 6
man/scaleBar.Rd | 11 -
tests/colourScale.R |only
vignettes/Makefile | 30 +--
vignettes/framed.sty |only
vignettes/mapLayers.rnw | 6
vignettes/mapmisc.rnw | 6
27 files changed, 405 insertions(+), 296 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Diff between geostatsp versions 1.1.5 dated 2014-11-13 and 1.1.8 dated 2015-01-05
Description: This package provides to geostatistical modelling facilities using Raster and SpatialPoints objects. Non-Gaussian models are fit using INLA.
Author: Patrick Brown
Maintainer: Patrick Brown
geostatsp-1.1.5/geostatsp/R/formulaLhs.R |only
geostatsp-1.1.8/geostatsp/DESCRIPTION | 13 ++---
geostatsp-1.1.8/geostatsp/MD5 | 30 ++++++-----
geostatsp-1.1.8/geostatsp/NAMESPACE | 2
geostatsp-1.1.8/geostatsp/R/0gm.R | 10 ++-
geostatsp-1.1.8/geostatsp/R/forInla.R |only
geostatsp-1.1.8/geostatsp/R/glgm.R | 2
geostatsp-1.1.8/geostatsp/R/krige.R | 67 +++++++++-----------------
geostatsp-1.1.8/geostatsp/R/loglikLgm.R | 55 ++++++++++-----------
geostatsp-1.1.8/geostatsp/R/resampleMethods.R |only
geostatsp-1.1.8/geostatsp/R/simLgcp.R | 23 ++++++--
geostatsp-1.1.8/geostatsp/R/stackRasterList.R | 2
geostatsp-1.1.8/geostatsp/man/inla.models.Rd |only
geostatsp-1.1.8/geostatsp/man/likfitLgm.Rd | 2
geostatsp-1.1.8/geostatsp/src/Makevars | 2
geostatsp-1.1.8/geostatsp/tests/glgm.R | 44 +++++++++++------
geostatsp-1.1.8/geostatsp/tests/lgcp.R | 10 +++
geostatsp-1.1.8/geostatsp/tests/simLgcp.R | 7 ++
18 files changed, 151 insertions(+), 118 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and Python
Diff between fastcluster versions 1.1.14 dated 2015-01-04 and 1.1.15 dated 2015-01-05
Description: This is a two-in-one package which provides interfaces to
both R and Python. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: “linkage” in the SciPy package
“scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the
“flashClust” package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner [aut, cph, cre]
Maintainer: Daniel Müllner
DESCRIPTION | 8 ++++----
MD5 | 20 ++++++++++----------
NEWS | 5 +++++
inst/doc/fastcluster.Rtex | 4 ++--
inst/doc/fastcluster.pdf |binary
src/python/fastcluster.py | 2 +-
src/python/test/nantest.py | 2 +-
src/python/test/test.py | 2 +-
src/python/test/vectortest.py | 2 +-
tests/test_fastcluster.R | 17 ++++++++++++++---
vignettes/fastcluster.Rtex | 4 ++--
11 files changed, 41 insertions(+), 25 deletions(-)
Title: Time Frame Coding Kernel
Diff between tframe versions 2012.8-1 dated 2012-09-20 and 2015.1-1 dated 2015-01-05
Description: A kernel of functions for programming
time series methods in a way that is relatively independently of the
representation of time. Also provides plotting, time windowing,
and some
other utility functions which are specifically intended for time series.
See the Guide distributed as a vignette, or ?tframe.Intro for more
details. (User utilities are in package tfplot.)
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 29 ++++++++++++++---------------
MD5 | 5 +++--
NEWS | 4 ++++
build |only
4 files changed, 21 insertions(+), 17 deletions(-)
Title: Tools To Generate Vector Time Series
Diff between RGENERATE versions 1.1 dated 2014-08-07 and 1.3 dated 2015-01-05
Description: A method 'generate' is implemented in this package for the random
generation of vector time series according to models obtained by 'RMAWGEN',
'vars' or other packages. This package was created to generalize the
algorithms of the RMAWGEN package for the analysis and generation of any
environmental vector time series.
Author: Emanuele Cordano
Maintainer: Emanuele Cordano
RGENERATE-1.1/RGENERATE/inst/stuff |only
RGENERATE-1.3/RGENERATE/DESCRIPTION | 23 -
RGENERATE-1.3/RGENERATE/MD5 | 13
RGENERATE-1.3/RGENERATE/NAMESPACE | 5
RGENERATE-1.3/RGENERATE/R/gapFilling.R |only
RGENERATE-1.3/RGENERATE/R/generate.R | 391 ++++++++++++++++++++++--------
RGENERATE-1.3/RGENERATE/README.md |only
RGENERATE-1.3/RGENERATE/man/gapFilling.Rd |only
RGENERATE-1.3/RGENERATE/man/generate.Rd | 124 ++++++++-
9 files changed, 432 insertions(+), 124 deletions(-)
Title: Analyzing RNA Sequence Count Tables Using Quasi-likelihood
Diff between QuasiSeq versions 1.0-4 dated 2014-04-14 and 1.0-5 dated 2015-01-05
Description: Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with QL, QLShrink and QLSpline methods (Lund, Nettleton, McCarthy, and Smyth, 2012).
Author: Steve Lund
Maintainer: Steve Lund
DESCRIPTION | 14 +-
MD5 | 18 +--
NAMESPACE | 2
R/NBDev.R | 42 -------
R/QL.fit.R | 314 +++++++++++++++++++++++++++---------------------------
R/QL.results.R | 8 +
R/negbin.br.R | 2
man/NBDev.Rd | 6 -
man/QL.fit.Rd | 29 +++-
man/QL.results.Rd | 21 ++-
10 files changed, 222 insertions(+), 234 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Diff between openair versions 1.0 dated 2014-06-10 and 1.1-0 dated 2015-01-05
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw
DESCRIPTION | 17
MD5 | 164 ++++-----
NAMESPACE | 8
NEWS | 46 ++
R/GoogleMapsPlot.R | 9
R/airbaseStats.R | 412 +++++++++++------------
R/aqStats.R | 2
R/calendarPlot.R | 2
R/checkPrep.R | 12
R/corPlot.R | 178 ++++++----
R/cutData.R | 18 -
R/import.R | 4
R/importTraj.R | 27 -
R/linearRelation.R | 14
R/modStats.R | 2
R/openair.generics.R | 5
R/percentileRose.R | 246 +++++++------
R/polarPlot.R | 32 -
R/scatterPlot.R | 620 +++++++++++++++++++++++++---------
R/smoothTrend.R | 218 +++++++-----
R/summaryPlot.R | 183 +++++-----
R/timeAverage.R | 240 +++++++++----
R/timePlot.R | 21 -
R/timeVariation.R | 67 ++-
R/trajCluster.R | 28 +
R/trajLevel.R |only
R/trajPlot.R | 509 +++++++---------------------
R/trendLevel.R | 799 +++++++++++++++++++++++----------------------
R/utilities.R | 99 +++--
R/windRose.R | 174 ++++-----
data/mydata.RData |binary
man/GoogleMapsPlot.Rd | 3
man/TaylorDiagram.Rd | 3
man/TheilSen.Rd | 3
man/airbaseFindCode.Rd | 3
man/airbaseInfo.Rd | 3
man/airbaseSplice.Rd | 3
man/airbaseStats.Rd | 5
man/aqStats.Rd | 3
man/calcFno2.Rd | 3
man/calcPercentile.Rd | 3
man/calendarPlot.Rd | 3
man/conditionalEval.Rd | 3
man/conditionalQuantile.Rd | 3
man/corPlot.Rd | 108 +++---
man/cutData.Rd | 3
man/drawOpenKey.Rd | 3
man/import.Rd | 3
man/importADMS.Rd | 3
man/importAURN.Rd | 3
man/importAURNCsv.Rd | 3
man/importAirbase.Rd | 3
man/importKCL.Rd | 3
man/importMeta.Rd | 3
man/importSAQN.Rd | 3
man/importTraj.Rd | 30 -
man/kernelExceed.Rd | 3
man/linearRelation.Rd | 5
man/modStats.Rd | 3
man/mydata.Rd | 3
man/openColours.Rd | 3
man/openair.Rd | 3
man/percentileRose.Rd | 3
man/polarAnnulus.Rd | 3
man/polarCluster.Rd | 3
man/polarFreq.Rd | 3
man/polarPlot.Rd | 3
man/quickText.Rd | 3
man/rollingMean.Rd | 3
man/scatterPlot.Rd | 13
man/selectByDate.Rd | 3
man/selectRunning.Rd | 3
man/smoothTrend.Rd | 78 ++--
man/splitByDate.Rd | 3
man/summaryPlot.Rd | 194 +++++-----
man/timeAverage.Rd | 125 +++++--
man/timePlot.Rd | 17
man/timeProp.Rd | 3
man/timeVariation.Rd | 29 +
man/trajCluster.Rd | 27 +
man/trajLevel.Rd |only
man/trajPlot.Rd | 203 ++---------
man/trendLevel.Rd | 198 ++++++-----
man/windRose.Rd | 8
84 files changed, 2902 insertions(+), 2408 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Diff between diseasemapping versions 1.1.2 dated 2014-11-13 and 1.1.4 dated 2015-01-05
More information about diseasemapping at CRAN
Description: Formating of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown
Maintainer: Patrick Brown
diseasemapping-1.1.2/diseasemapping/R/formulaLhs.R |only
diseasemapping-1.1.4/diseasemapping/DESCRIPTION | 18 +++---
diseasemapping-1.1.4/diseasemapping/MD5 | 19 +++----
diseasemapping-1.1.4/diseasemapping/NAMESPACE | 3 +
diseasemapping-1.1.4/diseasemapping/R/bym.R | 16 ++++--
diseasemapping-1.1.4/diseasemapping/R/forInla.R |only
diseasemapping-1.1.4/diseasemapping/data/casedata.RData |binary
diseasemapping-1.1.4/diseasemapping/data/kentucky.RData |binary
diseasemapping-1.1.4/diseasemapping/data/popdata.RData |binary
diseasemapping-1.1.4/diseasemapping/data/referencepop.RData |binary
diseasemapping-1.1.4/diseasemapping/man/inla.models.Rd |only
diseasemapping-1.1.4/diseasemapping/tests/bym.R | 31 ++++++++----
12 files changed, 55 insertions(+), 32 deletions(-)
Permanent link
Title: Convert Statistical Analysis Objects Into Tidy Data Frames
Diff between broom versions 0.3.4 dated 2014-11-23 and 0.3.5 dated 2015-01-05
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like dplyr, tidyr and ggplot2. The package provides three S3
generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance,
which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson
DESCRIPTION | 8 +-
MD5 | 134 +++++++++++++++++++++---------------------
NAMESPACE | 5 +
R/felm_tidiers.R | 4 -
R/gam_tidiers.R |only
R/glm_tidiers.R | 2
R/glmnet_tidiers.R | 2
R/globals.R | 2
R/lm_tidiers.R | 15 +++-
R/lme4_tidiers.R | 8 +-
R/rlm_tidiers.R |only
R/sp_tidiers.R | 1
R/utilities.R | 14 +++-
README.md | 7 +-
build/vignette.rds |binary
inst/doc/broom_and_dplyr.html | 45 +++-----------
inst/doc/kmeans.Rmd | 6 -
inst/doc/kmeans.html | 6 -
man/Arima_tidiers.Rd | 3
man/aareg_tidiers.Rd | 3
man/anova_tidiers.Rd | 3
man/augment.Rd | 3
man/augment_columns.Rd | 3
man/bootstrap.Rd | 3
man/cch_tidiers.Rd | 3
man/compact.Rd | 3
man/confint_tidy.Rd | 3
man/coxph_tidiers.Rd | 3
man/cv.glmnet_tidiers.Rd | 3
man/data.frame_tidiers.Rd | 3
man/felm_tidiers.Rd | 3
man/finish_glance.Rd | 3
man/fix_data_frame.Rd | 3
man/gam_tidiers.Rd |only
man/glance.Rd | 3
man/glm_tidiers.Rd | 5 -
man/glmnet_tidiers.Rd | 3
man/htest_tidiers.Rd | 3
man/inflate.Rd | 3
man/insert_NAs.Rd | 3
man/kmeans_tidiers.Rd | 3
man/lm_tidiers.Rd | 10 ++-
man/lme4_tidiers.Rd | 9 +-
man/multcomp_tidiers.Rd | 3
man/nls_tidiers.Rd | 3
man/pyears_tidiers.Rd | 3
man/ridgelm_tidiers.Rd | 3
man/rlm_tidiers.Rd |only
man/rowwise_df_tidiers.Rd | 3
man/sexpfit_tidiers.Rd | 3
man/smooth.spline_tidiers.Rd | 3
man/sp_tidiers.Rd | 3
man/survfit_tidiers.Rd | 3
man/survreg_tidiers.Rd | 3
man/tidy.NULL.Rd | 3
man/tidy.Rd | 3
man/tidy.TukeyHSD.Rd | 3
man/tidy.default.Rd | 3
man/tidy.density.Rd | 3
man/tidy.ftable.Rd | 3
man/tidy.manova.Rd | 3
man/tidy.map.Rd | 3
man/tidy.pairwise.htest.Rd | 3
man/tidy.spec.Rd | 3
man/tidy.table.Rd | 3
man/tidy.ts.Rd | 3
man/unrowname.Rd | 3
man/zoo_tidiers.Rd | 3
tests/testthat/test-lm.R | 6 +
vignettes/kmeans.Rmd | 6 -
70 files changed, 245 insertions(+), 185 deletions(-)
Title: TH's Data Archive
Diff between TH.data versions 1.0-5 dated 2014-11-24 and 1.0-6 dated 2015-01-05
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn
DESCRIPTION | 8
MD5 | 6
demo/PROACT.R | 561 +++++++++++++++++++--------------------------
inst/PSGLMM_MEE/README.txt | 10
4 files changed, 259 insertions(+), 326 deletions(-)
Title: Sparse Linear Algebra
Diff between SparseM versions 1.05 dated 2014-07-14 and 1.6 dated 2015-01-05
Description: Basic linear algebra for sparse matrices
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 9 +++++----
MD5 | 4 ++--
NAMESPACE | 28 +++++++++++++++++++++++++---
3 files changed, 32 insertions(+), 9 deletions(-)
Title: Partial Orders and Relations
Diff between pooh versions 0.2-1 dated 2013-03-29 and 0.3 dated 2015-01-05
Description: functions for computing closures of relations
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
DESCRIPTION | 10 +++++-----
LICENSE | 23 ++---------------------
MD5 | 13 +++++++++----
NAMESPACE | 1 +
R/tsort.R |only
man/tsort.Rd |only
man/weak.Rd | 2 +-
src/tsort.c |only
tests/heffalump.R |only
tests/heffalump.Rout.save |only
10 files changed, 18 insertions(+), 31 deletions(-)
Title: Nested Association Mapping
Diff between NAM versions 1.0 dated 2015-01-03 and 1.0.1 dated 2015-01-05
Description: NAM, biparental and random populations toolbox
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu
Maintainer: Alencar Xavier
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/blup.R | 4 +++-
man/NAM-package.Rd | 2 +-
man/blup.Rd | 4 ++--
5 files changed, 14 insertions(+), 12 deletions(-)
Title: Analysis of Feedback in Time Series
Diff between FeedbackTS versions 1.2 dated 2014-09-29 and 1.3 dated 2015-01-05
Description: Analysis of fragmented time directionality to investigate feedback in time series. Tools provided by the package allow the analysis of feedback for a single time series and the analysis of feedback for a set of time series collected across a spatial domain.
Author: Samuel Soubeyrand, Cindy E. Morris, E. Keith Bigg
Maintainer: Samuel Soubeyrand
DESCRIPTION | 8 ++++----
MD5 | 32 ++++++++++++++++----------------
man/FeedbackTS-package.Rd | 35 ++++++++++++++++-------------------
man/KDD-class.Rd | 2 +-
man/KDD.yearly.average-class.Rd | 2 +-
man/KT.output-class.Rd | 20 +++++++-------------
man/after.minus.before.Rd | 2 +-
man/feedback.stats.Rd | 2 +-
man/feedback.test.Rd | 3 ++-
man/kdd.Rd | 2 +-
man/kdd.from.raw.data.Rd | 5 ++---
man/kdd.yearly.average.Rd | 2 +-
man/krige.Rd | 8 ++++----
man/krige.test.Rd | 21 ++++++++-------------
man/map.statistic.Rd | 2 +-
man/rain.feedback.stats.Rd | 4 ++--
man/rain.site.6008.Rd | 4 ++--
17 files changed, 70 insertions(+), 84 deletions(-)
Title: docopt, command-line interface specification language
Diff between docopt versions 0.3 dated 2014-09-03 and 0.4.2 dated 2015-01-05
Description: docopt lets you define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge (edwindjonge@gmail.com)
Maintainer: Edwin de Jonge
docopt-0.3/docopt/inst/paper/Makefile |only
docopt-0.3/docopt/inst/paper/beamer.tex |only
docopt-0.3/docopt/inst/paper/figures |only
docopt-0.3/docopt/inst/paper/test.R |only
docopt-0.3/docopt/inst/paper/user2014.Rmd |only
docopt-0.3/docopt/inst/paper/user2014.html |only
docopt-0.3/docopt/inst/paper/user2014.md |only
docopt-0.3/docopt/inst/paper/user2014.pdf |only
docopt-0.3/docopt/tests/testthat/test_quotedargs.R |only
docopt-0.4.2/docopt/DESCRIPTION | 11
docopt-0.4.2/docopt/LICENSE | 4
docopt-0.4.2/docopt/MD5 | 57
docopt-0.4.2/docopt/NAMESPACE | 10
docopt-0.4.2/docopt/NEWS | 5
docopt-0.4.2/docopt/R/Pattern.R | 941 +--
docopt-0.4.2/docopt/R/Tokens.R | 211
docopt-0.4.2/docopt/R/docopt.R | 7
docopt-0.4.2/docopt/R/parse.R | 544 +-
docopt-0.4.2/docopt/R/pkg.R | 20
docopt-0.4.2/docopt/README.md | 159
docopt-0.4.2/docopt/inst/paper/docopt.bib | 64
docopt-0.4.2/docopt/inst/paper/docopt.tex | 160
docopt-0.4.2/docopt/inst/spec/README.md | 14
docopt-0.4.2/docopt/inst/spec/docopt.py | 1162 ++--
docopt-0.4.2/docopt/inst/spec/generate_tests.R | 178
docopt-0.4.2/docopt/inst/spec/testcases.docopt | 1914 +++----
docopt-0.4.2/docopt/man/as.character-Pattern-method.Rd | 32
docopt-0.4.2/docopt/man/as.character-Tokens-method.Rd | 32
docopt-0.4.2/docopt/man/docopt-package.Rd | 27
docopt-0.4.2/docopt/man/docopt.Rd | 3
docopt-0.4.2/docopt/man/sub-Tokens-method.Rd | 61
docopt-0.4.2/docopt/man/subset-Tokens-method.Rd | 58
docopt-0.4.2/docopt/tests/testthat/test_specs.R | 4088 ++++++++---------
33 files changed, 4858 insertions(+), 4904 deletions(-)
Title: Stellar CharactEristics Pisa Estimation gRid
Diff between SCEPtER versions 0.2-0 dated 2014-12-16 and 0.2-1 dated 2015-01-05
Description: SCEPtER pipeline for estimating the stellar age, mass, and radius
given observational
effective temperature, [Fe/H], and astroseismic
parameters. The results are obtained adopting a maximum likelihood
technique over a grid of pre-computed stellar models.
Author: Matteo Dell'Omodarme [aut, cre],
Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme
DESCRIPTION | 8 ++++----
MD5 | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Diff between HSAUR3 versions 1.0-2 dated 2014-08-19 and 1.0-3 dated 2015-01-05
Description: Functions, data sets, analyses and examples from the
third edition of the book
`A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
HSAUR3-1.0-2/HSAUR3/inst/slides/HSAUR_title.tex |only
HSAUR3-1.0-2/HSAUR3/inst/slides/Makefile |only
HSAUR3-1.0-2/HSAUR3/vignettes/LaTeXBibTeX/HSAUR.in |only
HSAUR3-1.0-2/HSAUR3/vignettes/LaTeXBibTeX/Makefile |only
HSAUR3-1.0-3/HSAUR3/DESCRIPTION | 8
HSAUR3-1.0-3/HSAUR3/MD5 | 112 ++++------
HSAUR3-1.0-3/HSAUR3/build/vignette.rds |binary
HSAUR3-1.0-3/HSAUR3/data/BCG.rda |binary
HSAUR3-1.0-3/HSAUR3/data/CYGOB1.rda |binary
HSAUR3-1.0-3/HSAUR3/data/Lanza.rda |binary
HSAUR3-1.0-3/HSAUR3/data/birthdeathrates.rda |binary
HSAUR3-1.0-3/HSAUR3/data/bladdercancer.rda |binary
HSAUR3-1.0-3/HSAUR3/data/epilepsy.rda |binary
HSAUR3-1.0-3/HSAUR3/data/foster.rda |binary
HSAUR3-1.0-3/HSAUR3/data/heptathlon.rda |binary
HSAUR3-1.0-3/HSAUR3/data/meteo.rda |binary
HSAUR3-1.0-3/HSAUR3/data/orallesions.rda |binary
HSAUR3-1.0-3/HSAUR3/data/phosphate.rda |binary
HSAUR3-1.0-3/HSAUR3/data/pistonrings.rda |binary
HSAUR3-1.0-3/HSAUR3/data/planets.rda |binary
HSAUR3-1.0-3/HSAUR3/data/plasma.rda |binary
HSAUR3-1.0-3/HSAUR3/data/polyps.rda |binary
HSAUR3-1.0-3/HSAUR3/data/rearrests.rda |binary
HSAUR3-1.0-3/HSAUR3/data/roomwidth.rda |binary
HSAUR3-1.0-3/HSAUR3/data/schizophrenia.rda |binary
HSAUR3-1.0-3/HSAUR3/data/schizophrenia2.rda |binary
HSAUR3-1.0-3/HSAUR3/data/smoking.rda |binary
HSAUR3-1.0-3/HSAUR3/data/students.rda |binary
HSAUR3-1.0-3/HSAUR3/data/suicides.rda |binary
HSAUR3-1.0-3/HSAUR3/data/toothpaste.rda |binary
HSAUR3-1.0-3/HSAUR3/data/voting.rda |binary
HSAUR3-1.0-3/HSAUR3/data/water.rda |binary
HSAUR3-1.0-3/HSAUR3/data/watervoles.rda |binary
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HSAUR3-1.0-3/HSAUR3/data/weightgain.rda |binary
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HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysis_of_variance.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_bayesian_inference.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_cluster_analysis.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_conditional_inference.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_density_estimation.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_errata.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_gam.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_graphical_display.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_introduction_to_R.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_logistic_regression_glm.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_meta_analysis.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_missing_values.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_multidimensional_scaling.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_multiple_linear_regression.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_principal_components_analysis.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_quantile_regression.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_recursive_partitioning.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_simple_inference.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_simultaneous_inference.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_survival_analysis.pdf |binary
HSAUR3-1.0-3/HSAUR3/inst/slides/title_UZH.tex | 2
59 files changed, 63 insertions(+), 63 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Diff between HSAUR2 versions 1.1-11 dated 2014-08-19 and 1.1-12 dated 2015-01-05
Description: Functions, data sets, analyses and examples from the
second edition of the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
HSAUR2-1.1-11/HSAUR2/inst/slides/HSAUR_title.tex |only
HSAUR2-1.1-11/HSAUR2/inst/slides/Makefile |only
HSAUR2-1.1-11/HSAUR2/vignettes/LaTeXBibTeX/HSAUR.in |only
HSAUR2-1.1-11/HSAUR2/vignettes/LaTeXBibTeX/Makefile |only
HSAUR2-1.1-12/HSAUR2/DESCRIPTION | 8
HSAUR2-1.1-12/HSAUR2/MD5 | 104 ++++------
HSAUR2-1.1-12/HSAUR2/build/vignette.rds |binary
HSAUR2-1.1-12/HSAUR2/data/BCG.rda |binary
HSAUR2-1.1-12/HSAUR2/data/CYGOB1.rda |binary
HSAUR2-1.1-12/HSAUR2/data/Lanza.rda |binary
HSAUR2-1.1-12/HSAUR2/data/birthdeathrates.rda |binary
HSAUR2-1.1-12/HSAUR2/data/bladdercancer.rda |binary
HSAUR2-1.1-12/HSAUR2/data/epilepsy.rda |binary
HSAUR2-1.1-12/HSAUR2/data/foster.rda |binary
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HSAUR2-1.1-12/HSAUR2/data/meteo.rda |binary
HSAUR2-1.1-12/HSAUR2/data/orallesions.rda |binary
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HSAUR2-1.1-12/HSAUR2/data/pistonrings.rda |binary
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HSAUR2-1.1-12/HSAUR2/data/plasma.rda |binary
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HSAUR2-1.1-12/HSAUR2/data/rearrests.rda |binary
HSAUR2-1.1-12/HSAUR2/data/roomwidth.rda |binary
HSAUR2-1.1-12/HSAUR2/data/schizophrenia.rda |binary
HSAUR2-1.1-12/HSAUR2/data/schizophrenia2.rda |binary
HSAUR2-1.1-12/HSAUR2/data/smoking.rda |binary
HSAUR2-1.1-12/HSAUR2/data/students.rda |binary
HSAUR2-1.1-12/HSAUR2/data/suicides.rda |binary
HSAUR2-1.1-12/HSAUR2/data/toothpaste.rda |binary
HSAUR2-1.1-12/HSAUR2/data/voting.rda |binary
HSAUR2-1.1-12/HSAUR2/data/water.rda |binary
HSAUR2-1.1-12/HSAUR2/data/watervoles.rda |binary
HSAUR2-1.1-12/HSAUR2/data/waves.rda |binary
HSAUR2-1.1-12/HSAUR2/data/weightgain.rda |binary
HSAUR2-1.1-12/HSAUR2/inst/NEWS | 4
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysis_of_variance.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_cluster_analysis.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_conditional_inference.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_density_estimation.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_errata.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_gam.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_graphical_display.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_introduction_to_R.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_logistic_regression_glm.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_meta_analysis.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_multidimensional_scaling.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_multiple_linear_regression.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_principal_components_analysis.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_recursive_partitioning.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_simple_inference.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_simultaneous_inference.pdf |binary
HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_survival_analysis.pdf |binary
55 files changed, 58 insertions(+), 58 deletions(-)
Title: A Handbook of Statistical Analyses Using R
Diff between HSAUR versions 1.3-4 dated 2014-08-19 and 1.3-5 dated 2015-01-05
Description: Functions, data sets, analyses and examples from the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2006). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
HSAUR-1.3-4/HSAUR/vignettes/LaTeXBibTeX/HSAUR.in |only
HSAUR-1.3-4/HSAUR/vignettes/LaTeXBibTeX/Makefile |only
HSAUR-1.3-5/HSAUR/DESCRIPTION | 8 -
HSAUR-1.3-5/HSAUR/MD5 | 42 ++++------
HSAUR-1.3-5/HSAUR/build/vignette.rds |binary
HSAUR-1.3-5/HSAUR/inst/NEWS | 4
HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysis_of_variance.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_cluster_analysis.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_conditional_inference.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_density_estimation.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_errata.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_introduction_to_R.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_logistic_regression_glm.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_meta_analysis.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_multidimensional_scaling.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_multiple_linear_regression.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_principal_components_analysis.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_recursive_partitioning.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_simple_inference.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/Ch_survival_analysis.pdf |binary
HSAUR-1.3-5/HSAUR/inst/doc/preface.pdf |binary
23 files changed, 28 insertions(+), 26 deletions(-)
Title: Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Diff between EnsembleBase versions 0.7 dated 2014-11-22 and 0.7.1 dated 2015-01-05
Description: Extensible S4 classes and methods for batch training of regression and classification algorithms such as Random Forest, Gradient Boosting Machine, Neural Network, Support Vector Machines, and K-Nearest Neighbors. These algorithms constitute a set of 'base learners', which can subsequently be combined together to form ensemble predictions. This package provides cross-validation wrappers to allow for downstream application of ensemble integration techniques, including best-error selection. All base learner estimation objects are retained, allowing for repeated prediction calls without the need for re-training. For large problems, an option is provided to save estimation objects to disk, along with prediction methods that utilize these objects. This allows users to train and predict with large ensembles of base learners without being constrained by system RAM.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
ChangeLog |only
DESCRIPTION | 8 ++++----
MD5 | 7 ++++---
NAMESPACE | 1 +
R/baselearners.R | 4 ++++
5 files changed, 13 insertions(+), 7 deletions(-)
Title: Kriging methods for computer experiments
Diff between DiceKriging versions 1.5.3 dated 2014-01-10 and 1.5.4 dated 2015-01-05
Description: Estimation, validation and prediction of kriging models.
Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributors: Clement Chevalier, Yann Richet.
Maintainer: Olivier Roustant
DiceKriging-1.5.3/DiceKriging/R/covAdditive0.R |only
DiceKriging-1.5.4/DiceKriging/CHANGELOG | 14 -
DiceKriging-1.5.4/DiceKriging/DESCRIPTION | 10
DiceKriging-1.5.4/DiceKriging/MD5 | 33 +-
DiceKriging-1.5.4/DiceKriging/R/drop.reponse.R | 8
DiceKriging-1.5.4/DiceKriging/R/km.R | 8
DiceKriging-1.5.4/DiceKriging/R/km1Nugget.init.R | 41 +--
DiceKriging-1.5.4/DiceKriging/R/kmEstimate.R | 134 ++++++----
DiceKriging-1.5.4/DiceKriging/R/kmNoNugget.init.R | 32 +-
DiceKriging-1.5.4/DiceKriging/R/kmNuggets.init.R | 53 +--
DiceKriging-1.5.4/DiceKriging/R/kmStruct.R | 10
DiceKriging-1.5.4/DiceKriging/inst/tests/test-SK-OrnsteinUhlenbeck.R |only
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DiceKriging-1.5.4/DiceKriging/man/km.Rd | 23 +
DiceKriging-1.5.4/DiceKriging/man/km1Nugget.init.Rd | 9
DiceKriging-1.5.4/DiceKriging/man/kmNoNugget.init.Rd | 12
DiceKriging-1.5.4/DiceKriging/man/kmNuggets.init.Rd | 8
DiceKriging-1.5.4/DiceKriging/man/simulate.km.Rd | 6
19 files changed, 252 insertions(+), 153 deletions(-)
Title: Moments, cumulants, skewness, kurtosis and related tests
Diff between moments versions 0.13 dated 2012-01-24 and 0.14 dated 2015-01-05
Description: Functions to calculate: moments, Pearson's kurtosis,
Geary's kurtosis and skewness; tests related to them
(Anscombe-Glynn, D'Agostino, Bonett-Seier).
Author: Lukasz Komsta
Maintainer: Lukasz Komsta
DESCRIPTION | 9 +++++----
MD5 | 4 ++--
R/agostino.test.R | 4 ++--
3 files changed, 9 insertions(+), 8 deletions(-)
Title: Target Inhibition Interaction using Maximization and
Minimization Averaging
Diff between timma versions 1.0.0 dated 2014-12-22 and 1.1.0 dated 2015-01-05
Description: Target Inhibition Interaction using Maximization/Minimization
Averaging
Author: Liye He
Maintainer: Liye He
DESCRIPTION | 8 +-
MD5 | 101 +++++++++++++++++++-----------------
R/binarizeDrugTargets.R |only
R/davis.R |only
R/drawGraph.R | 32 ++++-------
R/normalizeSensitivity.R |only
R/timma.R | 4 +
data/datalist | 1
data/davis.rda |only
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man/binarySet.Rd | 3 -
man/ci.Rd | 3 -
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man/drawGraph.Rd | 3 -
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man/findSameSet.Rd | 3 -
man/floating2.Rd | 3 -
man/getBinary.Rd | 3 -
man/getBinary1.Rd | 3 -
man/graycode2.Rd | 3 -
man/graycode3.Rd | 3 -
man/graycodeNames.Rd | 3 -
man/grays.Rd | 3 -
man/kiba.Rd | 3 -
man/miller_drug_response.Rd | 3 -
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man/miller_sensitivity.Rd | 3 -
man/miller_targets.Rd | 3 -
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man/searchSpace.Rd | 3 -
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man/sffsBinary2.Rd | 3 -
man/sffsCategory.Rd | 3 -
man/sffsCategory1.Rd | 3 -
man/sffsCategoryWeighted.Rd | 3 -
man/sffsCategoryWeighted1.Rd | 3 -
man/timma.Rd | 3 -
man/timmaBinary.Rd | 3 -
man/timmaBinary1.Rd | 3 -
man/timmaCategory.Rd | 3 -
man/timmaCategory1.Rd | 3 -
man/timmaCategoryWeighted.Rd | 3 -
man/timmaCategoryWeighted1.Rd | 3 -
man/timmaModel.Rd | 3 -
man/timmaModel1.Rd | 3 -
man/timmaSearchBinary.Rd | 3 -
man/timmaSearchBinary1.Rd | 3 -
man/tyner_interaction_binary.Rd | 27 ++++-----
man/tyner_interaction_multiclass.Rd | 27 ++++-----
man/tyner_sensitivity.Rd | 3 -
55 files changed, 184 insertions(+), 139 deletions(-)
Title: seawater carbonate chemistry with R
Diff between seacarb versions 3.0.3 dated 2014-12-10 and 3.0.4 dated 2015-01-05
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
James Orr [ctb],
Bernard Gentili [ctb],
Andreas Hofmann [ctb],
Aurélien Proye [ctb],
Karline Soetaert [ctb],
James Rae [ctb]
Maintainer: Jean-Pierre Gattuso
ChangeLog | 16 ++++++++
DESCRIPTION | 11 +++--
MD5 | 38 ++++++++++----------
NAMESPACE | 1
R/K1.R | 21 ++++++-----
R/K2.R | 29 ++++++---------
R/Kb.R | 18 ++++-----
R/Kf.R | 29 +++++++--------
R/Ks.R | 12 ++----
R/Pcorrect.R | 12 +++---
R/at.R | 5 +-
R/buffer.R | 13 ++----
R/buffesm.R | 11 ++---
R/carb.R | 97 ++++++++++++++++++++++++++++++++++++----------------
R/kconv.R | 19 +++++++++-
R/pHconv.R | 5 +-
R/rho.R | 31 +++++++---------
R/theta.R |only
data/Pcoeffs.txt.gz |binary
man/carb.Rd | 3 +
man/theta.Rd |only
21 files changed, 217 insertions(+), 154 deletions(-)
Title: MRI Tissue Classification
Diff between mritc versions 0.4-0 dated 2012-04-20 and 0.5-0 dated 2015-01-05
Description: Various methods for MRI tissue classification.
Author: Dai Feng and Luke Tierney
Maintainer: Dai Feng
mritc-0.4-0/mritc/R/readNIfTI.R |only
mritc-0.4-0/mritc/R/writeNIfTI.R |only
mritc-0.5-0/mritc/ChangeLog | 16 +
mritc-0.5-0/mritc/DESCRIPTION | 13 -
mritc-0.5-0/mritc/MD5 | 36 ++-
mritc-0.5-0/mritc/NAMESPACE | 3
mritc-0.5-0/mritc/R/getWeightsMRI.R |only
mritc-0.5-0/mritc/R/mriio.R | 38 ++--
mritc-0.5-0/mritc/R/mrispatial.R | 23 +-
mritc-0.5-0/mritc/R/mritc.R | 19 +-
mritc-0.5-0/mritc/R/mritc.bayes.R | 237 +++++++++++++++++++++++--
mritc-0.5-0/mritc/man/makeMRIspatial.Rd | 26 ++
mritc-0.5-0/mritc/man/measureMRI.Rd | 2
mritc-0.5-0/mritc/man/mritc-package.Rd | 46 +++-
mritc-0.5-0/mritc/man/mritc.Rd | 100 +++++++---
mritc-0.5-0/mritc/man/readMRI.Rd | 23 --
mritc-0.5-0/mritc/man/writeMRI.Rd | 33 +--
mritc-0.5-0/mritc/src/getDenSubBias_omp.c |only
mritc-0.5-0/mritc/src/updateBiasInde_omp.c |only
mritc-0.5-0/mritc/src/updateBiasWeights_omp.c |only
mritc-0.5-0/mritc/src/updateDistanceUnit_omp.c |only
mritc-0.5-0/mritc/src/updateSmoothWeights.c |only
mritc-0.5-0/mritc/src/updateYBias.c |only
mritc-0.5-0/mritc/src/yIndicesSummariesBias.c |only
24 files changed, 473 insertions(+), 142 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.6.1 dated 2014-12-30 and 1.6.2 dated 2015-01-05
Description: This package contains functions for performing tree-ring
analyses such as detrending, chronology building, and cross dating.
The package reads and writes standard file formats used in
dendrochronology
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Maintainer: Andy Bunn
ChangeLog | 23 +++++++++++++++--------
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
inst/doc/intro-dplR.pdf |binary
inst/doc/timeseries-dplR.pdf |binary
inst/doc/xdate-dplR.pdf |binary
inst/unitTests/runit.dplR.R | 31 ++++++++++++++++++-------------
7 files changed, 43 insertions(+), 31 deletions(-)
Title: Nonparametrics with Clustered Binary and Multinomial Data
Diff between CorrBin versions 1.4 dated 2013-12-12 and 1.5 dated 2015-01-05
Description: This package implements non-parametric analyses for clustered
binary and multinomial data. The elements of the cluster are assumed
exchangeable, and identical joint distribution (also known as marginal
compatibility, or reproducibility) is assumed for clusters of different
sizes. A trend test based on stochastic ordering is implemented.
Author: Aniko Szabo [aut, cre]
Maintainer: Aniko Szabo
DESCRIPTION | 32 +++---
MD5 | 72 ++++++++-------
NAMESPACE | 16 +++
R/CBData.R | 61 +++++++------
R/CMData.R | 201 +++++++++++++++++++++++++++++++++++++++++--
R/CorrBin-package.R | 18 +--
R/ExchMultinomial.R | 174 ++++++++++++++++++++++++++++++++++---
R/Reprod.R | 87 ------------------
R/aaa-generics.R |only
R/aaa-generics1.R |only
build/vignette.rds |binary
data/dehp.rda |binary
data/egde.rda |binary
data/shelltox.rda |binary
inst/doc/CorrBinVignette.pdf |binary
man/CBData.Rd | 50 ++++------
man/CMData.Rd | 69 +++++---------
man/CorrBin-internal.Rd | 4
man/CorrBin-package.Rd | 62 ++++++-------
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man/NOSTASOT.Rd | 81 +++++++----------
man/RS.trend.test.Rd | 34 +++----
man/SO.LRT.Rd | 34 +++----
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man/SO.trend.test.Rd | 58 +++++-------
man/dehp.Rd | 8 +
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man/multi.corr.Rd |only
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man/pdf.Rd | 61 +++++--------
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man/read.CMData.Rd | 35 ++-----
man/soControl.Rd | 42 +++-----
man/trend.test.Rd | 64 +++++--------
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man/unwrap.Rd | 45 +++------
41 files changed, 917 insertions(+), 706 deletions(-)