Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN package. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel
Diff between BH versions 1.55.0-2 dated 2015-01-04 and 1.55.0-3 dated 2015-01-05
ChangeLog | 7 DESCRIPTION | 8 MD5 | 400 +++++++++- README.md | 24 inst/NEWS.Rd | 6 inst/include/boost/bimap |only inst/include/boost/bimap.hpp |only inst/include/boost/function_types/member_function_pointer.hpp |only inst/include/boost/graph/adj_list_serialize.hpp |only inst/include/boost/graph/adjacency_list_io.hpp |only inst/include/boost/graph/adjacency_matrix.hpp |only inst/include/boost/graph/astar_search.hpp |only inst/include/boost/graph/bandwidth.hpp |only inst/include/boost/graph/bc_clustering.hpp |only inst/include/boost/graph/bellman_ford_shortest_paths.hpp |only inst/include/boost/graph/betweenness_centrality.hpp |only inst/include/boost/graph/biconnected_components.hpp |only inst/include/boost/graph/bipartite.hpp |only inst/include/boost/graph/boyer_myrvold_planar_test.hpp |only inst/include/boost/graph/boykov_kolmogorov_max_flow.hpp |only inst/include/boost/graph/bron_kerbosch_all_cliques.hpp |only inst/include/boost/graph/chrobak_payne_drawing.hpp |only inst/include/boost/graph/circle_layout.hpp |only inst/include/boost/graph/closeness_centrality.hpp |only inst/include/boost/graph/clustering_coefficient.hpp |only inst/include/boost/graph/compressed_sparse_row_graph.hpp |only inst/include/boost/graph/connected_components.hpp |only inst/include/boost/graph/copy.hpp |only inst/include/boost/graph/core_numbers.hpp |only inst/include/boost/graph/create_condensation_graph.hpp |only inst/include/boost/graph/cuthill_mckee_ordering.hpp |only inst/include/boost/graph/cycle_canceling.hpp |only inst/include/boost/graph/dag_shortest_paths.hpp |only inst/include/boost/graph/degree_centrality.hpp |only inst/include/boost/graph/depth_first_search.hpp |only inst/include/boost/graph/detail/augment.hpp |only inst/include/boost/graph/detail/compressed_sparse_row_struct.hpp |only inst/include/boost/graph/detail/connected_components.hpp |only inst/include/boost/graph/detail/geodesic.hpp |only inst/include/boost/graph/detail/histogram_sort.hpp |only inst/include/boost/graph/detail/incidence_iterator.hpp |only inst/include/boost/graph/detail/incremental_components.hpp |only inst/include/boost/graph/detail/index.hpp |only inst/include/boost/graph/detail/indexed_properties.hpp |only inst/include/boost/graph/detail/is_distributed_selector.hpp |only inst/include/boost/graph/detail/labeled_graph_traits.hpp |only inst/include/boost/graph/detail/list_base.hpp |only inst/include/boost/graph/detail/permutation.hpp |only inst/include/boost/graph/detail/read_graphviz_new.hpp |only inst/include/boost/graph/detail/read_graphviz_spirit.hpp |only inst/include/boost/graph/detail/self_avoiding_walk.hpp |only inst/include/boost/graph/detail/set_adaptor.hpp |only inst/include/boost/graph/detail/shadow_iterator.hpp |only inst/include/boost/graph/detail/sparse_ordering.hpp |only inst/include/boost/graph/dijkstra_shortest_paths_no_color_map.hpp |only inst/include/boost/graph/dimacs.hpp |only inst/include/boost/graph/directed_graph.hpp |only inst/include/boost/graph/distributed/adjacency_list.hpp |only inst/include/boost/graph/distributed/adjlist |only inst/include/boost/graph/distributed/betweenness_centrality.hpp |only inst/include/boost/graph/distributed/boman_et_al_graph_coloring.hpp |only inst/include/boost/graph/distributed/compressed_sparse_row_graph.hpp |only inst/include/boost/graph/distributed/connected_components.hpp |only inst/include/boost/graph/distributed/connected_components_parallel_search.hpp |only inst/include/boost/graph/distributed/dehne_gotz_min_spanning_tree.hpp |only inst/include/boost/graph/distributed/delta_stepping_shortest_paths.hpp |only inst/include/boost/graph/distributed/depth_first_search.hpp |only inst/include/boost/graph/distributed/detail/mpi_process_group.ipp |only inst/include/boost/graph/distributed/detail/tag_allocator.hpp |only inst/include/boost/graph/distributed/distributed_graph_utility.hpp |only inst/include/boost/graph/distributed/filtered_graph.hpp |only inst/include/boost/graph/distributed/fruchterman_reingold.hpp |only inst/include/boost/graph/distributed/graphviz.hpp |only inst/include/boost/graph/distributed/hohberg_biconnected_components.hpp |only inst/include/boost/graph/distributed/local_subgraph.hpp |only inst/include/boost/graph/distributed/mpi_process_group.hpp |only inst/include/boost/graph/distributed/named_graph.hpp |only inst/include/boost/graph/distributed/one_bit_color_map.hpp |only inst/include/boost/graph/distributed/page_rank.hpp |only inst/include/boost/graph/distributed/reverse_graph.hpp |only inst/include/boost/graph/distributed/rmat_graph_generator.hpp |only inst/include/boost/graph/distributed/selector.hpp |only inst/include/boost/graph/distributed/shuffled_distribution.hpp |only inst/include/boost/graph/distributed/st_connected.hpp |only inst/include/boost/graph/distributed/strong_components.hpp |only inst/include/boost/graph/distributed/vertex_list_adaptor.hpp |only inst/include/boost/graph/dll_import_export.hpp |only inst/include/boost/graph/dominator_tree.hpp |only inst/include/boost/graph/eccentricity.hpp |only inst/include/boost/graph/edge_coloring.hpp |only inst/include/boost/graph/edge_connectivity.hpp |only inst/include/boost/graph/edge_list.hpp |only inst/include/boost/graph/edmonds_karp_max_flow.hpp |only inst/include/boost/graph/edmunds_karp_max_flow.hpp |only inst/include/boost/graph/erdos_renyi_generator.hpp |only inst/include/boost/graph/exterior_property.hpp |only inst/include/boost/graph/filtered_graph.hpp |only inst/include/boost/graph/find_flow_cost.hpp |only inst/include/boost/graph/floyd_warshall_shortest.hpp |only inst/include/boost/graph/fruchterman_reingold.hpp |only inst/include/boost/graph/geodesic_distance.hpp |only inst/include/boost/graph/graph_archetypes.hpp |only inst/include/boost/graph/graph_as_tree.hpp |only inst/include/boost/graph/graph_stats.hpp |only inst/include/boost/graph/graph_test.hpp |only inst/include/boost/graph/graph_utility.hpp |only inst/include/boost/graph/graphml.hpp |only inst/include/boost/graph/graphviz.hpp |only inst/include/boost/graph/grid_graph.hpp |only inst/include/boost/graph/gursoy_atun_layout.hpp |only inst/include/boost/graph/hawick_circuits.hpp |only inst/include/boost/graph/howard_cycle_ratio.hpp |only inst/include/boost/graph/incremental_components.hpp |only inst/include/boost/graph/is_kuratowski_subgraph.hpp |only inst/include/boost/graph/is_straight_line_drawing.hpp |only inst/include/boost/graph/isomorphism.hpp |only inst/include/boost/graph/iteration_macros_undef.hpp |only inst/include/boost/graph/johnson_all_pairs_shortest.hpp |only inst/include/boost/graph/kamada_kawai_spring_layout.hpp |only inst/include/boost/graph/king_ordering.hpp |only inst/include/boost/graph/kruskal_min_spanning_tree.hpp |only inst/include/boost/graph/labeled_graph.hpp |only inst/include/boost/graph/leda_graph.hpp |only inst/include/boost/graph/lookup_edge.hpp |only inst/include/boost/graph/loop_erased_random_walk.hpp |only inst/include/boost/graph/make_biconnected_planar.hpp |only inst/include/boost/graph/make_connected.hpp |only inst/include/boost/graph/make_maximal_planar.hpp |only inst/include/boost/graph/matrix_as_graph.hpp |only inst/include/boost/graph/max_cardinality_matching.hpp |only inst/include/boost/graph/maximum_adjacency_search.hpp |only inst/include/boost/graph/mcgregor_common_subgraphs.hpp |only inst/include/boost/graph/mesh_graph_generator.hpp |only inst/include/boost/graph/metis.hpp |only inst/include/boost/graph/metric_tsp_approx.hpp |only inst/include/boost/graph/minimum_degree_ordering.hpp |only inst/include/boost/graph/neighbor_bfs.hpp |only inst/include/boost/graph/one_bit_color_map.hpp |only inst/include/boost/graph/page_rank.hpp |only inst/include/boost/graph/parallel/detail/property_holders.hpp |only inst/include/boost/graph/parallel/distribution.hpp |only inst/include/boost/graph/planar_canonical_ordering.hpp |only inst/include/boost/graph/planar_detail |only inst/include/boost/graph/planar_face_traversal.hpp |only inst/include/boost/graph/plod_generator.hpp |only inst/include/boost/graph/point_traits.hpp |only inst/include/boost/graph/prim_minimum_spanning_tree.hpp |only inst/include/boost/graph/profile.hpp |only inst/include/boost/graph/property_iter_range.hpp |only inst/include/boost/graph/property_maps/container_property_map.hpp |only inst/include/boost/graph/property_maps/matrix_property_map.hpp |only inst/include/boost/graph/push_relabel_max_flow.hpp |only inst/include/boost/graph/r_c_shortest_paths.hpp |only inst/include/boost/graph/random.hpp |only inst/include/boost/graph/random_layout.hpp |only inst/include/boost/graph/random_spanning_tree.hpp |only inst/include/boost/graph/read_dimacs.hpp |only inst/include/boost/graph/rmat_graph_generator.hpp |only inst/include/boost/graph/sequential_vertex_coloring.hpp |only inst/include/boost/graph/simple_point.hpp |only inst/include/boost/graph/sloan_ordering.hpp |only inst/include/boost/graph/small_world_generator.hpp |only inst/include/boost/graph/smallest_last_ordering.hpp |only inst/include/boost/graph/ssca_graph_generator.hpp |only inst/include/boost/graph/st_connected.hpp |only inst/include/boost/graph/stanford_graph.hpp |only inst/include/boost/graph/stoer_wagner_min_cut.hpp |only inst/include/boost/graph/strong_components.hpp |only inst/include/boost/graph/subgraph.hpp |only inst/include/boost/graph/successive_shortest_path_nonnegative_weights.hpp |only inst/include/boost/graph/tiernan_all_cycles.hpp |only inst/include/boost/graph/topological_sort.hpp |only inst/include/boost/graph/topology.hpp |only inst/include/boost/graph/transitive_closure.hpp |only inst/include/boost/graph/transitive_reduction.hpp |only inst/include/boost/graph/transpose_graph.hpp |only inst/include/boost/graph/tree_traits.hpp |only inst/include/boost/graph/two_graphs_common_spanning_trees.hpp |only inst/include/boost/graph/undirected_dfs.hpp |only inst/include/boost/graph/undirected_graph.hpp |only inst/include/boost/graph/use_mpi.hpp |only inst/include/boost/graph/vector_as_graph.hpp |only inst/include/boost/graph/vertex_and_edge_range.hpp |only inst/include/boost/graph/vf2_sub_graph_iso.hpp |only inst/include/boost/graph/wavefront.hpp |only inst/include/boost/graph/write_dimacs.hpp |only inst/include/boost/optional/optional_io.hpp |only inst/include/boost/property_map/dynamic_property_map.hpp |only inst/include/boost/property_map/function_property_map.hpp |only inst/include/boost/property_map/parallel/global_index_map.hpp |only inst/include/boost/property_map/transform_value_property_map.hpp |only inst/include/boost/property_tree |only inst/include/boost/tti |only inst/include/boost/tuple/tuple_io.hpp |only inst/include/boost/xpressive |only man/BH-package.Rd | 4 196 files changed, 427 insertions(+), 22 deletions(-)
Title: Database Interface and MySQL Driver for R
Description: Implements DBI-compliant Interface to MySQL and MariaDB Databases.
Author: Jeroen Ooms [aut, cre],
David A. James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms
Diff between RMySQL versions 0.9-3 dated 2012-01-17 and 0.10 dated 2015-01-05
RMySQL-0.10/RMySQL/DESCRIPTION | 48 RMySQL-0.10/RMySQL/MD5 | 123 RMySQL-0.10/RMySQL/NAMESPACE | 204 RMySQL-0.10/RMySQL/R/connection.R |only RMySQL-0.10/RMySQL/R/data-type.R |only RMySQL-0.10/RMySQL/R/default.R |only RMySQL-0.10/RMySQL/R/driver.R |only RMySQL-0.10/RMySQL/R/escaping.R |only RMySQL-0.10/RMySQL/R/extension.R |only RMySQL-0.10/RMySQL/R/is-valid.R |only RMySQL-0.10/RMySQL/R/mysql.R |only RMySQL-0.10/RMySQL/R/result.R |only RMySQL-0.10/RMySQL/R/table.R |only RMySQL-0.10/RMySQL/R/transaction.R |only RMySQL-0.10/RMySQL/R/zzz_compatibility.R |only RMySQL-0.10/RMySQL/README.md |only RMySQL-0.10/RMySQL/configure | 4422 ---------- RMySQL-0.10/RMySQL/configure.win | 20 RMySQL-0.10/RMySQL/man/MySQLConnection-class.Rd | 73 RMySQL-0.10/RMySQL/man/MySQLDriver-class.Rd | 95 RMySQL-0.10/RMySQL/man/MySQLResult-class.Rd | 67 RMySQL-0.10/RMySQL/man/constants.Rd |only RMySQL-0.10/RMySQL/man/db-meta.Rd |only RMySQL-0.10/RMySQL/man/dbApply.Rd | 117 RMySQL-0.10/RMySQL/man/dbColumnInfo-MySQLConnection-method.Rd |only RMySQL-0.10/RMySQL/man/dbConnect-MySQLDriver-method.Rd |only RMySQL-0.10/RMySQL/man/dbDataType-MySQLDriver-method.Rd |only RMySQL-0.10/RMySQL/man/dbEscapeStrings.Rd | 51 RMySQL-0.10/RMySQL/man/dbGetInfo-MySQLDriver-method.Rd |only RMySQL-0.10/RMySQL/man/dbNextResult.Rd | 87 RMySQL-0.10/RMySQL/man/dbQuoteIdentifier-MySQLConnection-character-method.Rd |only RMySQL-0.10/RMySQL/man/dbReadTable.Rd |only RMySQL-0.10/RMySQL/man/dbUnloadDriver-MySQLDriver-method.Rd |only RMySQL-0.10/RMySQL/man/dbWriteTable.Rd |only RMySQL-0.10/RMySQL/man/isIdCurrent.Rd | 64 RMySQL-0.10/RMySQL/man/make.db.names-MySQLConnection-character-method.Rd |only RMySQL-0.10/RMySQL/man/mysqlBuildTableDefinition.Rd |only RMySQL-0.10/RMySQL/man/mysqlClientLibraryVersions.Rd | 21 RMySQL-0.10/RMySQL/man/mysqlHasDefault.Rd |only RMySQL-0.10/RMySQL/man/query.Rd |only RMySQL-0.10/RMySQL/man/result-meta.Rd |only RMySQL-0.10/RMySQL/man/transactions.Rd |only RMySQL-0.10/RMySQL/src/Makevars.win |only RMySQL-0.10/RMySQL/src/RMySQL-init.c |only RMySQL-0.10/RMySQL/src/RS-MySQL.h | 266 RMySQL-0.10/RMySQL/src/S4R.h | 169 RMySQL-0.10/RMySQL/src/connection.c |only RMySQL-0.10/RMySQL/src/db-apply.c |only RMySQL-0.10/RMySQL/src/driver.c |only RMySQL-0.10/RMySQL/src/exception.c |only RMySQL-0.10/RMySQL/src/fields.c |only RMySQL-0.10/RMySQL/src/result.c |only RMySQL-0.10/RMySQL/src/utils.c |only RMySQL-0.10/RMySQL/tests/testthat |only RMySQL-0.10/RMySQL/tests/testthat.R |only RMySQL-0.10/RMySQL/tools |only RMySQL-0.9-3/RMySQL/R/MySQL.R |only RMySQL-0.9-3/RMySQL/R/MySQLSupport.R |only RMySQL-0.9-3/RMySQL/R/S4R.R |only RMySQL-0.9-3/RMySQL/R/dbObjectId.R |only RMySQL-0.9-3/RMySQL/R/zzz.R |only RMySQL-0.9-3/RMySQL/configure.in |only RMySQL-0.9-3/RMySQL/inst |only RMySQL-0.9-3/RMySQL/man/MySQL.Rd |only RMySQL-0.9-3/RMySQL/man/MySQLObject-class.Rd |only RMySQL-0.9-3/RMySQL/man/RMySQL-package.Rd |only RMySQL-0.9-3/RMySQL/man/S4R.Rd |only RMySQL-0.9-3/RMySQL/man/dbApply-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbBuildTableDefinition.Rd |only RMySQL-0.9-3/RMySQL/man/dbCallProc-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbCommit-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbConnect-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbDataType-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbDriver-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbEscapeStrings-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbGetInfo-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbListTables-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbNextResult-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbObjectId-class.Rd |only RMySQL-0.9-3/RMySQL/man/dbReadTable-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbSendQuery-methods.Rd |only RMySQL-0.9-3/RMySQL/man/dbSetDataMappings-methods.Rd |only RMySQL-0.9-3/RMySQL/man/fetch-methods.Rd |only RMySQL-0.9-3/RMySQL/man/make.db.names-methods.Rd |only RMySQL-0.9-3/RMySQL/man/mysqlDBApply.Rd |only RMySQL-0.9-3/RMySQL/man/mysqlSupport.Rd |only RMySQL-0.9-3/RMySQL/man/safe.write.Rd |only RMySQL-0.9-3/RMySQL/man/summary-methods.Rd |only RMySQL-0.9-3/RMySQL/src/Makevars.in |only RMySQL-0.9-3/RMySQL/src/Makevars.win32 |only RMySQL-0.9-3/RMySQL/src/Makevars.win64 |only RMySQL-0.9-3/RMySQL/src/RS-DBI.c |only RMySQL-0.9-3/RMySQL/src/RS-DBI.h |only RMySQL-0.9-3/RMySQL/src/RS-MySQL.c |only RMySQL-0.9-3/RMySQL/tests/tests.R |only RMySQL-0.9-3/RMySQL/tests/tests.Rout.save |only 96 files changed, 656 insertions(+), 5171 deletions(-)
Title: Collection of Configurable GTK+ Menus
Description: Set of configurable menus built with GTK+ to graphically interface new functions.
Author: Gianmarco Polotti
Maintainer: Gianmarco Polotti
Diff between MenuCollection versions 1.0 dated 2014-12-17 and 1.1 dated 2015-01-05
DESCRIPTION | 6 - MD5 | 206 +++++++++++++++++++++--------------------- R/menucollection.r | 18 +-- man/dovc.Rd | 2 man/figures/inpboxc.png |binary man/figures/inpboxc2.png |binary man/figures/inpboxc2k.png |binary man/figures/inpboxck.png |binary man/figures/inpboxcke.png |binary man/figures/inpboxcr2.png |binary man/figures/inpboxcr3.png |binary man/figures/inpboxcr4.png |binary man/figures/inpboxe1.png |binary man/figures/inpboxe2.png |binary man/figures/inpboxe2c.png |binary man/figures/inpboxe2k.png |binary man/figures/inpboxe2k2.png |binary man/figures/inpboxe2r2.png |binary man/figures/inpboxe3.png |binary man/figures/inpboxe3c.png |binary man/figures/inpboxe3ce.png |binary man/figures/inpboxe3k.png |binary man/figures/inpboxe3k2.png |binary man/figures/inpboxe3k3.png |binary man/figures/inpboxe4.png |binary man/figures/inpboxe4c2.png |binary man/figures/inpboxe4c2k.png |binary man/figures/inpboxe4cek2.png |binary man/figures/inpboxe4ck.png |binary man/figures/inpboxe4k.png |binary man/figures/inpboxe4k2.png |binary man/figures/inpboxe4k3.png |binary man/figures/inpboxe4r2.png |binary man/figures/inpboxe5.png |binary man/figures/inpboxe5k2.png |binary man/figures/inpboxe5k3.png |binary man/figures/inpboxe6k2.png |binary man/figures/inpboxe6k3.png |binary man/figures/inpboxe6r2.png |binary man/figures/inpboxe7k2.png |binary man/figures/inpboxe7r2.png |binary man/figures/inpboxe8r2.png |binary man/figures/inpboxec.png |binary man/figures/inpboxecece.png |binary man/figures/inpboxek2.png |binary man/figures/inpboxer3.png |binary man/figures/inpboxk6.png |binary man/figures/inpboxk6k6e6.png |binary man/figures/inpboxk7k7.png |binary man/figures/inpboxr2.png |binary man/figures/messagebox.png |binary man/figures/messageyesno.png |binary man/givedim.Rd | 2 man/givemat.Rd | 5 - man/inpboxc.Rd | 3 man/inpboxc2.Rd | 3 man/inpboxc2k.Rd | 3 man/inpboxck.Rd | 3 man/inpboxcke.Rd | 3 man/inpboxcr2.Rd | 3 man/inpboxcr3.Rd | 3 man/inpboxcr4.Rd | 3 man/inpboxe1.Rd | 3 man/inpboxe2.Rd | 3 man/inpboxe2c.Rd | 3 man/inpboxe2k.Rd | 3 man/inpboxe2k2.Rd | 3 man/inpboxe2r2.Rd | 3 man/inpboxe3.Rd | 3 man/inpboxe3c.Rd | 3 man/inpboxe3ce.Rd | 3 man/inpboxe3k.Rd | 3 man/inpboxe3k2.Rd | 3 man/inpboxe3k3.Rd | 3 man/inpboxe4.Rd | 3 man/inpboxe4c2.Rd | 3 man/inpboxe4c2k.Rd | 3 man/inpboxe4cek2.Rd | 3 man/inpboxe4ck.Rd | 3 man/inpboxe4k.Rd | 3 man/inpboxe4k2.Rd | 3 man/inpboxe4k3.Rd | 3 man/inpboxe4r2.Rd | 3 man/inpboxe5.Rd | 3 man/inpboxe5k2.Rd | 4 man/inpboxe5k3.Rd | 3 man/inpboxe6k2.Rd | 4 man/inpboxe6k3.Rd | 3 man/inpboxe6r2.Rd | 3 man/inpboxe7k2.Rd | 3 man/inpboxe7r2.Rd | 3 man/inpboxe8r2.Rd | 3 man/inpboxec.Rd | 3 man/inpboxecece.Rd | 3 man/inpboxek2.Rd | 3 man/inpboxer3.Rd | 3 man/inpboxk6.Rd | 3 man/inpboxk6k6e6.Rd | 11 +- man/inpboxk7k7.Rd | 11 +- man/inpboxlist.Rd | 3 man/inpboxr2.Rd | 3 man/menucollection-package.Rd | 8 - man/messabox.Rd | 3 man/messayesno.Rd | 3 104 files changed, 231 insertions(+), 181 deletions(-)
More information about MenuCollection at CRAN
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Title: Utilities for Producing Maps
Description: This package contains various utilities for producing nice looking maps in R.
Author: Patrick Brown
Maintainer: Patrick Brown
Diff between mapmisc versions 1.0.0 dated 2014-09-17 and 1.1.1 dated 2015-01-05
DESCRIPTION | 14 - MD5 | 50 ++--- NAMESPACE | 2 R/colourScale.R | 420 ++++++++++++++++++++++++++++------------------- R/geonames.R | 7 R/getTiles.R | 32 ++- R/insetMap.R | 34 +-- R/openmap.R | 36 ++-- build/vignette.rds |binary data/netherlands.RData |binary inst/doc/mapLayers.R | 6 inst/doc/mapLayers.pdf |binary inst/doc/mapLayers.rnw | 6 inst/doc/mapmisc.R | 6 inst/doc/mapmisc.pdf |binary inst/doc/mapmisc.rnw | 6 inst/extdata/tiles.RData |binary man/colourScale.Rd | 3 man/geonames.Rd | 2 man/netherlands.Rd | 18 +- man/openmap.Rd | 6 man/scaleBar.Rd | 11 - tests/colourScale.R |only vignettes/Makefile | 30 +-- vignettes/framed.sty |only vignettes/mapLayers.rnw | 6 vignettes/mapmisc.rnw | 6 27 files changed, 405 insertions(+), 296 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: This package provides to geostatistical modelling facilities using Raster and SpatialPoints objects. Non-Gaussian models are fit using INLA.
Author: Patrick Brown
Maintainer: Patrick Brown
Diff between geostatsp versions 1.1.5 dated 2014-11-13 and 1.1.8 dated 2015-01-05
geostatsp-1.1.5/geostatsp/R/formulaLhs.R |only geostatsp-1.1.8/geostatsp/DESCRIPTION | 13 ++--- geostatsp-1.1.8/geostatsp/MD5 | 30 ++++++----- geostatsp-1.1.8/geostatsp/NAMESPACE | 2 geostatsp-1.1.8/geostatsp/R/0gm.R | 10 ++- geostatsp-1.1.8/geostatsp/R/forInla.R |only geostatsp-1.1.8/geostatsp/R/glgm.R | 2 geostatsp-1.1.8/geostatsp/R/krige.R | 67 +++++++++----------------- geostatsp-1.1.8/geostatsp/R/loglikLgm.R | 55 ++++++++++----------- geostatsp-1.1.8/geostatsp/R/resampleMethods.R |only geostatsp-1.1.8/geostatsp/R/simLgcp.R | 23 ++++++-- geostatsp-1.1.8/geostatsp/R/stackRasterList.R | 2 geostatsp-1.1.8/geostatsp/man/inla.models.Rd |only geostatsp-1.1.8/geostatsp/man/likfitLgm.Rd | 2 geostatsp-1.1.8/geostatsp/src/Makevars | 2 geostatsp-1.1.8/geostatsp/tests/glgm.R | 44 +++++++++++------ geostatsp-1.1.8/geostatsp/tests/lgcp.R | 10 +++ geostatsp-1.1.8/geostatsp/tests/simLgcp.R | 7 ++ 18 files changed, 151 insertions(+), 118 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and Python
Description: This is a two-in-one package which provides interfaces to
both R and Python. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: “linkage” in the SciPy package
“scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the
“flashClust” package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner [aut, cph, cre]
Maintainer: Daniel Müllner
Diff between fastcluster versions 1.1.14 dated 2015-01-04 and 1.1.15 dated 2015-01-05
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 5 +++++ inst/doc/fastcluster.Rtex | 4 ++-- inst/doc/fastcluster.pdf |binary src/python/fastcluster.py | 2 +- src/python/test/nantest.py | 2 +- src/python/test/test.py | 2 +- src/python/test/vectortest.py | 2 +- tests/test_fastcluster.R | 17 ++++++++++++++--- vignettes/fastcluster.Rtex | 4 ++-- 11 files changed, 41 insertions(+), 25 deletions(-)
Title: Time Frame Coding Kernel
Description: A kernel of functions for programming
time series methods in a way that is relatively independently of the
representation of time. Also provides plotting, time windowing,
and some
other utility functions which are specifically intended for time series.
See the Guide distributed as a vignette, or ?tframe.Intro for more
details. (User utilities are in package tfplot.)
Author: Paul Gilbert
Maintainer: Paul Gilbert
Diff between tframe versions 2012.8-1 dated 2012-09-20 and 2015.1-1 dated 2015-01-05
DESCRIPTION | 29 ++++++++++++++--------------- MD5 | 5 +++-- NEWS | 4 ++++ build |only 4 files changed, 21 insertions(+), 17 deletions(-)
Title: Tools To Generate Vector Time Series
Description: A method 'generate' is implemented in this package for the random
generation of vector time series according to models obtained by 'RMAWGEN',
'vars' or other packages. This package was created to generalize the
algorithms of the RMAWGEN package for the analysis and generation of any
environmental vector time series.
Author: Emanuele Cordano
Maintainer: Emanuele Cordano
Diff between RGENERATE versions 1.1 dated 2014-08-07 and 1.3 dated 2015-01-05
RGENERATE-1.1/RGENERATE/inst/stuff |only RGENERATE-1.3/RGENERATE/DESCRIPTION | 23 - RGENERATE-1.3/RGENERATE/MD5 | 13 RGENERATE-1.3/RGENERATE/NAMESPACE | 5 RGENERATE-1.3/RGENERATE/R/gapFilling.R |only RGENERATE-1.3/RGENERATE/R/generate.R | 391 ++++++++++++++++++++++-------- RGENERATE-1.3/RGENERATE/README.md |only RGENERATE-1.3/RGENERATE/man/gapFilling.Rd |only RGENERATE-1.3/RGENERATE/man/generate.Rd | 124 ++++++++- 9 files changed, 432 insertions(+), 124 deletions(-)
Title: Analyzing RNA Sequence Count Tables Using Quasi-likelihood
Description: Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with QL, QLShrink and QLSpline methods (Lund, Nettleton, McCarthy, and Smyth, 2012).
Author: Steve Lund
Maintainer: Steve Lund
Diff between QuasiSeq versions 1.0-4 dated 2014-04-14 and 1.0-5 dated 2015-01-05
DESCRIPTION | 14 +- MD5 | 18 +-- NAMESPACE | 2 R/NBDev.R | 42 ------- R/QL.fit.R | 314 +++++++++++++++++++++++++++--------------------------- R/QL.results.R | 8 + R/negbin.br.R | 2 man/NBDev.Rd | 6 - man/QL.fit.Rd | 29 +++- man/QL.results.Rd | 21 ++- 10 files changed, 222 insertions(+), 234 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw
Diff between openair versions 1.0 dated 2014-06-10 and 1.1-0 dated 2015-01-05
DESCRIPTION | 17 MD5 | 164 ++++----- NAMESPACE | 8 NEWS | 46 ++ R/GoogleMapsPlot.R | 9 R/airbaseStats.R | 412 +++++++++++------------ R/aqStats.R | 2 R/calendarPlot.R | 2 R/checkPrep.R | 12 R/corPlot.R | 178 ++++++---- R/cutData.R | 18 - R/import.R | 4 R/importTraj.R | 27 - R/linearRelation.R | 14 R/modStats.R | 2 R/openair.generics.R | 5 R/percentileRose.R | 246 +++++++------ R/polarPlot.R | 32 - R/scatterPlot.R | 620 +++++++++++++++++++++++++--------- R/smoothTrend.R | 218 +++++++----- R/summaryPlot.R | 183 +++++----- R/timeAverage.R | 240 +++++++++---- R/timePlot.R | 21 - R/timeVariation.R | 67 ++- R/trajCluster.R | 28 + R/trajLevel.R |only R/trajPlot.R | 509 +++++++--------------------- R/trendLevel.R | 799 +++++++++++++++++++++++---------------------- R/utilities.R | 99 +++-- R/windRose.R | 174 ++++----- data/mydata.RData |binary man/GoogleMapsPlot.Rd | 3 man/TaylorDiagram.Rd | 3 man/TheilSen.Rd | 3 man/airbaseFindCode.Rd | 3 man/airbaseInfo.Rd | 3 man/airbaseSplice.Rd | 3 man/airbaseStats.Rd | 5 man/aqStats.Rd | 3 man/calcFno2.Rd | 3 man/calcPercentile.Rd | 3 man/calendarPlot.Rd | 3 man/conditionalEval.Rd | 3 man/conditionalQuantile.Rd | 3 man/corPlot.Rd | 108 +++--- man/cutData.Rd | 3 man/drawOpenKey.Rd | 3 man/import.Rd | 3 man/importADMS.Rd | 3 man/importAURN.Rd | 3 man/importAURNCsv.Rd | 3 man/importAirbase.Rd | 3 man/importKCL.Rd | 3 man/importMeta.Rd | 3 man/importSAQN.Rd | 3 man/importTraj.Rd | 30 - man/kernelExceed.Rd | 3 man/linearRelation.Rd | 5 man/modStats.Rd | 3 man/mydata.Rd | 3 man/openColours.Rd | 3 man/openair.Rd | 3 man/percentileRose.Rd | 3 man/polarAnnulus.Rd | 3 man/polarCluster.Rd | 3 man/polarFreq.Rd | 3 man/polarPlot.Rd | 3 man/quickText.Rd | 3 man/rollingMean.Rd | 3 man/scatterPlot.Rd | 13 man/selectByDate.Rd | 3 man/selectRunning.Rd | 3 man/smoothTrend.Rd | 78 ++-- man/splitByDate.Rd | 3 man/summaryPlot.Rd | 194 +++++----- man/timeAverage.Rd | 125 +++++-- man/timePlot.Rd | 17 man/timeProp.Rd | 3 man/timeVariation.Rd | 29 + man/trajCluster.Rd | 27 + man/trajLevel.Rd |only man/trajPlot.Rd | 203 ++--------- man/trendLevel.Rd | 198 ++++++----- man/windRose.Rd | 8 84 files changed, 2902 insertions(+), 2408 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formating of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown
Maintainer: Patrick Brown
Diff between diseasemapping versions 1.1.2 dated 2014-11-13 and 1.1.4 dated 2015-01-05
diseasemapping-1.1.2/diseasemapping/R/formulaLhs.R |only diseasemapping-1.1.4/diseasemapping/DESCRIPTION | 18 +++--- diseasemapping-1.1.4/diseasemapping/MD5 | 19 +++---- diseasemapping-1.1.4/diseasemapping/NAMESPACE | 3 + diseasemapping-1.1.4/diseasemapping/R/bym.R | 16 ++++-- diseasemapping-1.1.4/diseasemapping/R/forInla.R |only diseasemapping-1.1.4/diseasemapping/data/casedata.RData |binary diseasemapping-1.1.4/diseasemapping/data/kentucky.RData |binary diseasemapping-1.1.4/diseasemapping/data/popdata.RData |binary diseasemapping-1.1.4/diseasemapping/data/referencepop.RData |binary diseasemapping-1.1.4/diseasemapping/man/inla.models.Rd |only diseasemapping-1.1.4/diseasemapping/tests/bym.R | 31 ++++++++---- 12 files changed, 55 insertions(+), 32 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: Convert Statistical Analysis Objects Into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like dplyr, tidyr and ggplot2. The package provides three S3
generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance,
which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson
Diff between broom versions 0.3.4 dated 2014-11-23 and 0.3.5 dated 2015-01-05
DESCRIPTION | 8 +- MD5 | 134 +++++++++++++++++++++--------------------- NAMESPACE | 5 + R/felm_tidiers.R | 4 - R/gam_tidiers.R |only R/glm_tidiers.R | 2 R/glmnet_tidiers.R | 2 R/globals.R | 2 R/lm_tidiers.R | 15 +++- R/lme4_tidiers.R | 8 +- R/rlm_tidiers.R |only R/sp_tidiers.R | 1 R/utilities.R | 14 +++- README.md | 7 +- build/vignette.rds |binary inst/doc/broom_and_dplyr.html | 45 +++----------- inst/doc/kmeans.Rmd | 6 - inst/doc/kmeans.html | 6 - man/Arima_tidiers.Rd | 3 man/aareg_tidiers.Rd | 3 man/anova_tidiers.Rd | 3 man/augment.Rd | 3 man/augment_columns.Rd | 3 man/bootstrap.Rd | 3 man/cch_tidiers.Rd | 3 man/compact.Rd | 3 man/confint_tidy.Rd | 3 man/coxph_tidiers.Rd | 3 man/cv.glmnet_tidiers.Rd | 3 man/data.frame_tidiers.Rd | 3 man/felm_tidiers.Rd | 3 man/finish_glance.Rd | 3 man/fix_data_frame.Rd | 3 man/gam_tidiers.Rd |only man/glance.Rd | 3 man/glm_tidiers.Rd | 5 - man/glmnet_tidiers.Rd | 3 man/htest_tidiers.Rd | 3 man/inflate.Rd | 3 man/insert_NAs.Rd | 3 man/kmeans_tidiers.Rd | 3 man/lm_tidiers.Rd | 10 ++- man/lme4_tidiers.Rd | 9 +- man/multcomp_tidiers.Rd | 3 man/nls_tidiers.Rd | 3 man/pyears_tidiers.Rd | 3 man/ridgelm_tidiers.Rd | 3 man/rlm_tidiers.Rd |only man/rowwise_df_tidiers.Rd | 3 man/sexpfit_tidiers.Rd | 3 man/smooth.spline_tidiers.Rd | 3 man/sp_tidiers.Rd | 3 man/survfit_tidiers.Rd | 3 man/survreg_tidiers.Rd | 3 man/tidy.NULL.Rd | 3 man/tidy.Rd | 3 man/tidy.TukeyHSD.Rd | 3 man/tidy.default.Rd | 3 man/tidy.density.Rd | 3 man/tidy.ftable.Rd | 3 man/tidy.manova.Rd | 3 man/tidy.map.Rd | 3 man/tidy.pairwise.htest.Rd | 3 man/tidy.spec.Rd | 3 man/tidy.table.Rd | 3 man/tidy.ts.Rd | 3 man/unrowname.Rd | 3 man/zoo_tidiers.Rd | 3 tests/testthat/test-lm.R | 6 + vignettes/kmeans.Rmd | 6 - 70 files changed, 245 insertions(+), 185 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn
Diff between TH.data versions 1.0-5 dated 2014-11-24 and 1.0-6 dated 2015-01-05
DESCRIPTION | 8 MD5 | 6 demo/PROACT.R | 561 +++++++++++++++++++-------------------------- inst/PSGLMM_MEE/README.txt | 10 4 files changed, 259 insertions(+), 326 deletions(-)
Title: Sparse Linear Algebra
Description: Basic linear algebra for sparse matrices
Author: Roger Koenker
Maintainer: Roger Koenker
Diff between SparseM versions 1.05 dated 2014-07-14 and 1.6 dated 2015-01-05
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- NAMESPACE | 28 +++++++++++++++++++++++++--- 3 files changed, 32 insertions(+), 9 deletions(-)
Title: Partial Orders and Relations
Description: functions for computing closures of relations
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
Diff between pooh versions 0.2-1 dated 2013-03-29 and 0.3 dated 2015-01-05
DESCRIPTION | 10 +++++----- LICENSE | 23 ++--------------------- MD5 | 13 +++++++++---- NAMESPACE | 1 + R/tsort.R |only man/tsort.Rd |only man/weak.Rd | 2 +- src/tsort.c |only tests/heffalump.R |only tests/heffalump.Rout.save |only 10 files changed, 18 insertions(+), 31 deletions(-)
Title: Nested Association Mapping
Description: NAM, biparental and random populations toolbox
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu
Maintainer: Alencar Xavier
Diff between NAM versions 1.0 dated 2015-01-03 and 1.0.1 dated 2015-01-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/blup.R | 4 +++- man/NAM-package.Rd | 2 +- man/blup.Rd | 4 ++-- 5 files changed, 14 insertions(+), 12 deletions(-)
Title: Analysis of Feedback in Time Series
Description: Analysis of fragmented time directionality to investigate feedback in time series. Tools provided by the package allow the analysis of feedback for a single time series and the analysis of feedback for a set of time series collected across a spatial domain.
Author: Samuel Soubeyrand, Cindy E. Morris, E. Keith Bigg
Maintainer: Samuel Soubeyrand
Diff between FeedbackTS versions 1.2 dated 2014-09-29 and 1.3 dated 2015-01-05
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- man/FeedbackTS-package.Rd | 35 ++++++++++++++++------------------- man/KDD-class.Rd | 2 +- man/KDD.yearly.average-class.Rd | 2 +- man/KT.output-class.Rd | 20 +++++++------------- man/after.minus.before.Rd | 2 +- man/feedback.stats.Rd | 2 +- man/feedback.test.Rd | 3 ++- man/kdd.Rd | 2 +- man/kdd.from.raw.data.Rd | 5 ++--- man/kdd.yearly.average.Rd | 2 +- man/krige.Rd | 8 ++++---- man/krige.test.Rd | 21 ++++++++------------- man/map.statistic.Rd | 2 +- man/rain.feedback.stats.Rd | 4 ++-- man/rain.site.6008.Rd | 4 ++-- 17 files changed, 70 insertions(+), 84 deletions(-)
Title: docopt, command-line interface specification language
Description: docopt lets you define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge (edwindjonge@gmail.com)
Maintainer: Edwin de Jonge
Diff between docopt versions 0.3 dated 2014-09-03 and 0.4.2 dated 2015-01-05
docopt-0.3/docopt/inst/paper/Makefile |only docopt-0.3/docopt/inst/paper/beamer.tex |only docopt-0.3/docopt/inst/paper/figures |only docopt-0.3/docopt/inst/paper/test.R |only docopt-0.3/docopt/inst/paper/user2014.Rmd |only docopt-0.3/docopt/inst/paper/user2014.html |only docopt-0.3/docopt/inst/paper/user2014.md |only docopt-0.3/docopt/inst/paper/user2014.pdf |only docopt-0.3/docopt/tests/testthat/test_quotedargs.R |only docopt-0.4.2/docopt/DESCRIPTION | 11 docopt-0.4.2/docopt/LICENSE | 4 docopt-0.4.2/docopt/MD5 | 57 docopt-0.4.2/docopt/NAMESPACE | 10 docopt-0.4.2/docopt/NEWS | 5 docopt-0.4.2/docopt/R/Pattern.R | 941 +-- docopt-0.4.2/docopt/R/Tokens.R | 211 docopt-0.4.2/docopt/R/docopt.R | 7 docopt-0.4.2/docopt/R/parse.R | 544 +- docopt-0.4.2/docopt/R/pkg.R | 20 docopt-0.4.2/docopt/README.md | 159 docopt-0.4.2/docopt/inst/paper/docopt.bib | 64 docopt-0.4.2/docopt/inst/paper/docopt.tex | 160 docopt-0.4.2/docopt/inst/spec/README.md | 14 docopt-0.4.2/docopt/inst/spec/docopt.py | 1162 ++-- docopt-0.4.2/docopt/inst/spec/generate_tests.R | 178 docopt-0.4.2/docopt/inst/spec/testcases.docopt | 1914 +++---- docopt-0.4.2/docopt/man/as.character-Pattern-method.Rd | 32 docopt-0.4.2/docopt/man/as.character-Tokens-method.Rd | 32 docopt-0.4.2/docopt/man/docopt-package.Rd | 27 docopt-0.4.2/docopt/man/docopt.Rd | 3 docopt-0.4.2/docopt/man/sub-Tokens-method.Rd | 61 docopt-0.4.2/docopt/man/subset-Tokens-method.Rd | 58 docopt-0.4.2/docopt/tests/testthat/test_specs.R | 4088 ++++++++--------- 33 files changed, 4858 insertions(+), 4904 deletions(-)
Title: Stellar CharactEristics Pisa Estimation gRid
Description: SCEPtER pipeline for estimating the stellar age, mass, and radius
given observational
effective temperature, [Fe/H], and astroseismic
parameters. The results are obtained adopting a maximum likelihood
technique over a grid of pre-computed stellar models.
Author: Matteo Dell'Omodarme [aut, cre],
Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme
Diff between SCEPtER versions 0.2-0 dated 2014-12-16 and 0.2-1 dated 2015-01-05
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
`A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
Diff between HSAUR3 versions 1.0-2 dated 2014-08-19 and 1.0-3 dated 2015-01-05
HSAUR3-1.0-2/HSAUR3/inst/slides/HSAUR_title.tex |only HSAUR3-1.0-2/HSAUR3/inst/slides/Makefile |only HSAUR3-1.0-2/HSAUR3/vignettes/LaTeXBibTeX/HSAUR.in |only HSAUR3-1.0-2/HSAUR3/vignettes/LaTeXBibTeX/Makefile |only HSAUR3-1.0-3/HSAUR3/DESCRIPTION | 8 HSAUR3-1.0-3/HSAUR3/MD5 | 112 ++++------ HSAUR3-1.0-3/HSAUR3/build/vignette.rds |binary HSAUR3-1.0-3/HSAUR3/data/BCG.rda |binary HSAUR3-1.0-3/HSAUR3/data/CYGOB1.rda |binary HSAUR3-1.0-3/HSAUR3/data/Lanza.rda |binary HSAUR3-1.0-3/HSAUR3/data/birthdeathrates.rda |binary HSAUR3-1.0-3/HSAUR3/data/bladdercancer.rda |binary HSAUR3-1.0-3/HSAUR3/data/epilepsy.rda |binary HSAUR3-1.0-3/HSAUR3/data/foster.rda |binary HSAUR3-1.0-3/HSAUR3/data/heptathlon.rda |binary HSAUR3-1.0-3/HSAUR3/data/meteo.rda |binary HSAUR3-1.0-3/HSAUR3/data/orallesions.rda |binary HSAUR3-1.0-3/HSAUR3/data/phosphate.rda |binary HSAUR3-1.0-3/HSAUR3/data/pistonrings.rda |binary HSAUR3-1.0-3/HSAUR3/data/planets.rda |binary HSAUR3-1.0-3/HSAUR3/data/plasma.rda |binary HSAUR3-1.0-3/HSAUR3/data/polyps.rda |binary HSAUR3-1.0-3/HSAUR3/data/rearrests.rda |binary HSAUR3-1.0-3/HSAUR3/data/roomwidth.rda |binary HSAUR3-1.0-3/HSAUR3/data/schizophrenia.rda |binary HSAUR3-1.0-3/HSAUR3/data/schizophrenia2.rda |binary HSAUR3-1.0-3/HSAUR3/data/smoking.rda |binary HSAUR3-1.0-3/HSAUR3/data/students.rda |binary HSAUR3-1.0-3/HSAUR3/data/suicides.rda |binary HSAUR3-1.0-3/HSAUR3/data/toothpaste.rda |binary HSAUR3-1.0-3/HSAUR3/data/voting.rda |binary HSAUR3-1.0-3/HSAUR3/data/water.rda |binary HSAUR3-1.0-3/HSAUR3/data/watervoles.rda |binary HSAUR3-1.0-3/HSAUR3/data/waves.rda |binary HSAUR3-1.0-3/HSAUR3/data/weightgain.rda |binary HSAUR3-1.0-3/HSAUR3/inst/NEWS | 4 HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_analysis_of_variance.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_bayesian_inference.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_cluster_analysis.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_conditional_inference.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_density_estimation.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_errata.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_gam.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_graphical_display.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_introduction_to_R.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_logistic_regression_glm.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_meta_analysis.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_missing_values.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_multidimensional_scaling.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_multiple_linear_regression.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_principal_components_analysis.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_quantile_regression.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_recursive_partitioning.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_simple_inference.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_simultaneous_inference.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/doc/Ch_survival_analysis.pdf |binary HSAUR3-1.0-3/HSAUR3/inst/slides/title_UZH.tex | 2 59 files changed, 63 insertions(+), 63 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
Diff between HSAUR2 versions 1.1-11 dated 2014-08-19 and 1.1-12 dated 2015-01-05
HSAUR2-1.1-11/HSAUR2/inst/slides/HSAUR_title.tex |only HSAUR2-1.1-11/HSAUR2/inst/slides/Makefile |only HSAUR2-1.1-11/HSAUR2/vignettes/LaTeXBibTeX/HSAUR.in |only HSAUR2-1.1-11/HSAUR2/vignettes/LaTeXBibTeX/Makefile |only HSAUR2-1.1-12/HSAUR2/DESCRIPTION | 8 HSAUR2-1.1-12/HSAUR2/MD5 | 104 ++++------ HSAUR2-1.1-12/HSAUR2/build/vignette.rds |binary HSAUR2-1.1-12/HSAUR2/data/BCG.rda |binary HSAUR2-1.1-12/HSAUR2/data/CYGOB1.rda |binary HSAUR2-1.1-12/HSAUR2/data/Lanza.rda |binary HSAUR2-1.1-12/HSAUR2/data/birthdeathrates.rda |binary HSAUR2-1.1-12/HSAUR2/data/bladdercancer.rda |binary HSAUR2-1.1-12/HSAUR2/data/epilepsy.rda |binary HSAUR2-1.1-12/HSAUR2/data/foster.rda |binary HSAUR2-1.1-12/HSAUR2/data/heptathlon.rda |binary HSAUR2-1.1-12/HSAUR2/data/meteo.rda |binary HSAUR2-1.1-12/HSAUR2/data/orallesions.rda |binary HSAUR2-1.1-12/HSAUR2/data/phosphate.rda |binary HSAUR2-1.1-12/HSAUR2/data/pistonrings.rda |binary HSAUR2-1.1-12/HSAUR2/data/planets.rda |binary HSAUR2-1.1-12/HSAUR2/data/plasma.rda |binary HSAUR2-1.1-12/HSAUR2/data/polyps.rda |binary HSAUR2-1.1-12/HSAUR2/data/rearrests.rda |binary HSAUR2-1.1-12/HSAUR2/data/roomwidth.rda |binary HSAUR2-1.1-12/HSAUR2/data/schizophrenia.rda |binary HSAUR2-1.1-12/HSAUR2/data/schizophrenia2.rda |binary HSAUR2-1.1-12/HSAUR2/data/smoking.rda |binary HSAUR2-1.1-12/HSAUR2/data/students.rda |binary HSAUR2-1.1-12/HSAUR2/data/suicides.rda |binary HSAUR2-1.1-12/HSAUR2/data/toothpaste.rda |binary HSAUR2-1.1-12/HSAUR2/data/voting.rda |binary HSAUR2-1.1-12/HSAUR2/data/water.rda |binary HSAUR2-1.1-12/HSAUR2/data/watervoles.rda |binary HSAUR2-1.1-12/HSAUR2/data/waves.rda |binary HSAUR2-1.1-12/HSAUR2/data/weightgain.rda |binary HSAUR2-1.1-12/HSAUR2/inst/NEWS | 4 HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_analysis_of_variance.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_cluster_analysis.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_conditional_inference.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_density_estimation.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_errata.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_gam.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_graphical_display.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_introduction_to_R.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_logistic_regression_glm.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_meta_analysis.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_multidimensional_scaling.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_multiple_linear_regression.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_principal_components_analysis.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_recursive_partitioning.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_simple_inference.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_simultaneous_inference.pdf |binary HSAUR2-1.1-12/HSAUR2/inst/doc/Ch_survival_analysis.pdf |binary 55 files changed, 58 insertions(+), 58 deletions(-)
Title: A Handbook of Statistical Analyses Using R
Description: Functions, data sets, analyses and examples from the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2006). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
Diff between HSAUR versions 1.3-4 dated 2014-08-19 and 1.3-5 dated 2015-01-05
HSAUR-1.3-4/HSAUR/vignettes/LaTeXBibTeX/HSAUR.in |only HSAUR-1.3-4/HSAUR/vignettes/LaTeXBibTeX/Makefile |only HSAUR-1.3-5/HSAUR/DESCRIPTION | 8 - HSAUR-1.3-5/HSAUR/MD5 | 42 ++++------ HSAUR-1.3-5/HSAUR/build/vignette.rds |binary HSAUR-1.3-5/HSAUR/inst/NEWS | 4 HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_analysis_of_variance.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_cluster_analysis.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_conditional_inference.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_density_estimation.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_errata.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_introduction_to_R.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_logistic_regression_glm.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_meta_analysis.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_multidimensional_scaling.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_multiple_linear_regression.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_principal_components_analysis.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_recursive_partitioning.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_simple_inference.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/Ch_survival_analysis.pdf |binary HSAUR-1.3-5/HSAUR/inst/doc/preface.pdf |binary 23 files changed, 28 insertions(+), 26 deletions(-)
Title: Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Description: Extensible S4 classes and methods for batch training of regression and classification algorithms such as Random Forest, Gradient Boosting Machine, Neural Network, Support Vector Machines, and K-Nearest Neighbors. These algorithms constitute a set of 'base learners', which can subsequently be combined together to form ensemble predictions. This package provides cross-validation wrappers to allow for downstream application of ensemble integration techniques, including best-error selection. All base learner estimation objects are retained, allowing for repeated prediction calls without the need for re-training. For large problems, an option is provided to save estimation objects to disk, along with prediction methods that utilize these objects. This allows users to train and predict with large ensembles of base learners without being constrained by system RAM.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
Diff between EnsembleBase versions 0.7 dated 2014-11-22 and 0.7.1 dated 2015-01-05
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 1 + R/baselearners.R | 4 ++++ 5 files changed, 13 insertions(+), 7 deletions(-)
Title: Kriging methods for computer experiments
Description: Estimation, validation and prediction of kriging models.
Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributors: Clement Chevalier, Yann Richet.
Maintainer: Olivier Roustant
Diff between DiceKriging versions 1.5.3 dated 2014-01-10 and 1.5.4 dated 2015-01-05
DiceKriging-1.5.3/DiceKriging/R/covAdditive0.R |only DiceKriging-1.5.4/DiceKriging/CHANGELOG | 14 - DiceKriging-1.5.4/DiceKriging/DESCRIPTION | 10 DiceKriging-1.5.4/DiceKriging/MD5 | 33 +- DiceKriging-1.5.4/DiceKriging/R/drop.reponse.R | 8 DiceKriging-1.5.4/DiceKriging/R/km.R | 8 DiceKriging-1.5.4/DiceKriging/R/km1Nugget.init.R | 41 +-- DiceKriging-1.5.4/DiceKriging/R/kmEstimate.R | 134 ++++++---- DiceKriging-1.5.4/DiceKriging/R/kmNoNugget.init.R | 32 +- DiceKriging-1.5.4/DiceKriging/R/kmNuggets.init.R | 53 +-- DiceKriging-1.5.4/DiceKriging/R/kmStruct.R | 10 DiceKriging-1.5.4/DiceKriging/inst/tests/test-SK-OrnsteinUhlenbeck.R |only DiceKriging-1.5.4/DiceKriging/inst/tests/test-interp.R |only DiceKriging-1.5.4/DiceKriging/man/DiceKriging-package.Rd | 4 DiceKriging-1.5.4/DiceKriging/man/km.Rd | 23 + DiceKriging-1.5.4/DiceKriging/man/km1Nugget.init.Rd | 9 DiceKriging-1.5.4/DiceKriging/man/kmNoNugget.init.Rd | 12 DiceKriging-1.5.4/DiceKriging/man/kmNuggets.init.Rd | 8 DiceKriging-1.5.4/DiceKriging/man/simulate.km.Rd | 6 19 files changed, 252 insertions(+), 153 deletions(-)
Title: Moments, cumulants, skewness, kurtosis and related tests
Description: Functions to calculate: moments, Pearson's kurtosis,
Geary's kurtosis and skewness; tests related to them
(Anscombe-Glynn, D'Agostino, Bonett-Seier).
Author: Lukasz Komsta
Maintainer: Lukasz Komsta
Diff between moments versions 0.13 dated 2012-01-24 and 0.14 dated 2015-01-05
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- R/agostino.test.R | 4 ++-- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Target Inhibition Interaction using Maximization and
Minimization Averaging
Description: Target Inhibition Interaction using Maximization/Minimization
Averaging
Author: Liye He
Maintainer: Liye He
Diff between timma versions 1.0.0 dated 2014-12-22 and 1.1.0 dated 2015-01-05
DESCRIPTION | 8 +- MD5 | 101 +++++++++++++++++++----------------- R/binarizeDrugTargets.R |only R/davis.R |only R/drawGraph.R | 32 ++++------- R/normalizeSensitivity.R |only R/timma.R | 4 + data/datalist | 1 data/davis.rda |only man/binarizeDrugTargets.Rd |only man/binarySet.Rd | 3 - man/ci.Rd | 3 - man/davis.Rd |only man/dec2bin.Rd | 3 - man/drawGraph.Rd | 3 - man/drugRank.Rd | 3 - man/findSameCol.Rd | 3 - man/findSameSet.Rd | 3 - man/floating2.Rd | 3 - man/getBinary.Rd | 3 - man/getBinary1.Rd | 3 - man/graycode2.Rd | 3 - man/graycode3.Rd | 3 - man/graycodeNames.Rd | 3 - man/grays.Rd | 3 - man/kiba.Rd | 3 - man/miller_drug_response.Rd | 3 - man/miller_drugs.Rd | 3 - man/miller_interaction_binary.Rd | 3 - man/miller_sensitivity.Rd | 3 - man/miller_targets.Rd | 3 - man/normalizeSensitivity.Rd |only man/searchSpace.Rd | 3 - man/sffs.Rd | 3 - man/sffsBinary.Rd | 3 - man/sffsBinary1.Rd | 3 - man/sffsBinary2.Rd | 3 - man/sffsCategory.Rd | 3 - man/sffsCategory1.Rd | 3 - man/sffsCategoryWeighted.Rd | 3 - man/sffsCategoryWeighted1.Rd | 3 - man/timma.Rd | 3 - man/timmaBinary.Rd | 3 - man/timmaBinary1.Rd | 3 - man/timmaCategory.Rd | 3 - man/timmaCategory1.Rd | 3 - man/timmaCategoryWeighted.Rd | 3 - man/timmaCategoryWeighted1.Rd | 3 - man/timmaModel.Rd | 3 - man/timmaModel1.Rd | 3 - man/timmaSearchBinary.Rd | 3 - man/timmaSearchBinary1.Rd | 3 - man/tyner_interaction_binary.Rd | 27 ++++----- man/tyner_interaction_multiclass.Rd | 27 ++++----- man/tyner_sensitivity.Rd | 3 - 55 files changed, 184 insertions(+), 139 deletions(-)
Title: seawater carbonate chemistry with R
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
James Orr [ctb],
Bernard Gentili [ctb],
Andreas Hofmann [ctb],
Aurélien Proye [ctb],
Karline Soetaert [ctb],
James Rae [ctb]
Maintainer: Jean-Pierre Gattuso
Diff between seacarb versions 3.0.3 dated 2014-12-10 and 3.0.4 dated 2015-01-05
ChangeLog | 16 ++++++++ DESCRIPTION | 11 +++-- MD5 | 38 ++++++++++---------- NAMESPACE | 1 R/K1.R | 21 ++++++----- R/K2.R | 29 ++++++--------- R/Kb.R | 18 ++++----- R/Kf.R | 29 +++++++-------- R/Ks.R | 12 ++---- R/Pcorrect.R | 12 +++--- R/at.R | 5 +- R/buffer.R | 13 ++---- R/buffesm.R | 11 ++--- R/carb.R | 97 ++++++++++++++++++++++++++++++++++++---------------- R/kconv.R | 19 +++++++++- R/pHconv.R | 5 +- R/rho.R | 31 +++++++--------- R/theta.R |only data/Pcoeffs.txt.gz |binary man/carb.Rd | 3 + man/theta.Rd |only 21 files changed, 217 insertions(+), 154 deletions(-)
Title: MRI Tissue Classification
Description: Various methods for MRI tissue classification.
Author: Dai Feng and Luke Tierney
Maintainer: Dai Feng
Diff between mritc versions 0.4-0 dated 2012-04-20 and 0.5-0 dated 2015-01-05
mritc-0.4-0/mritc/R/readNIfTI.R |only mritc-0.4-0/mritc/R/writeNIfTI.R |only mritc-0.5-0/mritc/ChangeLog | 16 + mritc-0.5-0/mritc/DESCRIPTION | 13 - mritc-0.5-0/mritc/MD5 | 36 ++- mritc-0.5-0/mritc/NAMESPACE | 3 mritc-0.5-0/mritc/R/getWeightsMRI.R |only mritc-0.5-0/mritc/R/mriio.R | 38 ++-- mritc-0.5-0/mritc/R/mrispatial.R | 23 +- mritc-0.5-0/mritc/R/mritc.R | 19 +- mritc-0.5-0/mritc/R/mritc.bayes.R | 237 +++++++++++++++++++++++-- mritc-0.5-0/mritc/man/makeMRIspatial.Rd | 26 ++ mritc-0.5-0/mritc/man/measureMRI.Rd | 2 mritc-0.5-0/mritc/man/mritc-package.Rd | 46 +++- mritc-0.5-0/mritc/man/mritc.Rd | 100 +++++++--- mritc-0.5-0/mritc/man/readMRI.Rd | 23 -- mritc-0.5-0/mritc/man/writeMRI.Rd | 33 +-- mritc-0.5-0/mritc/src/getDenSubBias_omp.c |only mritc-0.5-0/mritc/src/updateBiasInde_omp.c |only mritc-0.5-0/mritc/src/updateBiasWeights_omp.c |only mritc-0.5-0/mritc/src/updateDistanceUnit_omp.c |only mritc-0.5-0/mritc/src/updateSmoothWeights.c |only mritc-0.5-0/mritc/src/updateYBias.c |only mritc-0.5-0/mritc/src/yIndicesSummariesBias.c |only 24 files changed, 473 insertions(+), 142 deletions(-)
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing tree-ring
analyses such as detrending, chronology building, and cross dating.
The package reads and writes standard file formats used in
dendrochronology
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Maintainer: Andy Bunn
Diff between dplR versions 1.6.1 dated 2014-12-30 and 1.6.2 dated 2015-01-05
ChangeLog | 23 +++++++++++++++-------- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/intro-dplR.pdf |binary inst/doc/timeseries-dplR.pdf |binary inst/doc/xdate-dplR.pdf |binary inst/unitTests/runit.dplR.R | 31 ++++++++++++++++++------------- 7 files changed, 43 insertions(+), 31 deletions(-)
Title: Nonparametrics with Clustered Binary and Multinomial Data
Description: This package implements non-parametric analyses for clustered
binary and multinomial data. The elements of the cluster are assumed
exchangeable, and identical joint distribution (also known as marginal
compatibility, or reproducibility) is assumed for clusters of different
sizes. A trend test based on stochastic ordering is implemented.
Author: Aniko Szabo [aut, cre]
Maintainer: Aniko Szabo
Diff between CorrBin versions 1.4 dated 2013-12-12 and 1.5 dated 2015-01-05
DESCRIPTION | 32 +++--- MD5 | 72 ++++++++------- NAMESPACE | 16 +++ R/CBData.R | 61 +++++++------ R/CMData.R | 201 +++++++++++++++++++++++++++++++++++++++++-- R/CorrBin-package.R | 18 +-- R/ExchMultinomial.R | 174 ++++++++++++++++++++++++++++++++++--- R/Reprod.R | 87 ------------------ R/aaa-generics.R |only R/aaa-generics1.R |only build/vignette.rds |binary data/dehp.rda |binary data/egde.rda |binary data/shelltox.rda |binary inst/doc/CorrBinVignette.pdf |binary man/CBData.Rd | 50 ++++------ man/CMData.Rd | 69 +++++--------- man/CorrBin-internal.Rd | 4 man/CorrBin-package.Rd | 62 ++++++------- man/Extract.Rd |only man/GEE.trend.test.Rd | 40 +++----- man/NOSTASOT.Rd | 81 +++++++---------- man/RS.trend.test.Rd | 34 +++---- man/SO.LRT.Rd | 34 +++---- man/SO.mc.est.Rd | 71 ++++++--------- man/SO.trend.test.Rd | 58 +++++------- man/dehp.Rd | 8 + man/jointprobs.Rd |only man/mc.est.Rd | 67 ++++++++------ man/mc.test.chisq.Rd | 64 ++++++------- man/multi.corr.Rd |only man/multinom.gen.Rd |only man/pdf.Rd | 61 +++++-------- man/ran.CBData.Rd | 51 ++++------ man/ran.CMData.Rd |only man/read.CBData.Rd | 22 ++-- man/read.CMData.Rd | 35 ++----- man/soControl.Rd | 42 +++----- man/trend.test.Rd | 64 +++++-------- man/uniprobs.Rd |only man/unwrap.Rd | 45 +++------ 41 files changed, 917 insertions(+), 706 deletions(-)