Tue, 06 Jan 2015

Package rSPACE updated to version 1.0.4 with previous version 1.0 dated 2014-12-16

Title: Spatially-Explicit Power Analysis for Conservation and Ecology
Description: Conducts a spatially-explicit, simulation-based power analysis for detecting trends in population abundance through occupancy-based modeling. Applicable for evaluating monitoring designs in conservation and ecological settings.
Author: Martha Ellis, Jake Ivan, Jody Tucker, Mike Schwartz
Maintainer: Martha Ellis

Diff between rSPACE versions 1.0 dated 2014-12-16 and 1.0.4 dated 2015-01-06

 DESCRIPTION            |    8 +++++---
 MD5                    |   12 ++++++------
 R/AddDropIndividuals.R |    2 +-
 R/Create_Landscapes.r  |    7 +------
 R/Encounter_history.R  |    3 ++-
 R/Test_Samples.r       |    2 +-
 R/checkParameters.R    |   27 ++++++++++++++++++++++-----
 7 files changed, 38 insertions(+), 23 deletions(-)

More information about rSPACE at CRAN
Permanent link

Package lsmeans updated to version 2.14 with previous version 2.13 dated 2014-11-13

Title: Least-Squares Means
Description: Obtain least-squares means for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of least-squares means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell V. Lenth [aut], Maxime Hervé [ctb]
Maintainer: Russ Lenth

Diff between lsmeans versions 2.13 dated 2014-11-13 and 2.14 dated 2015-01-06

 lsmeans-2.13/lsmeans/R/old-lsmeans.R               |only
 lsmeans-2.13/lsmeans/inst/doc/lsmeans-changes.R    |only
 lsmeans-2.13/lsmeans/inst/doc/lsmeans-changes.pdf  |only
 lsmeans-2.13/lsmeans/inst/doc/lsmeans-changes.rnw  |only
 lsmeans-2.13/lsmeans/vignettes/lsmeans-changes.rnw |only
 lsmeans-2.14/lsmeans/DESCRIPTION                   |   12 
 lsmeans-2.14/lsmeans/MD5                           |   66 +--
 lsmeans-2.14/lsmeans/NAMESPACE                     |   20 -
 lsmeans-2.14/lsmeans/R/cld.lsm.R                   |   15 
 lsmeans-2.14/lsmeans/R/glht-support.R              |    2 
 lsmeans-2.14/lsmeans/R/helpers.R                   |   11 
 lsmeans-2.14/lsmeans/R/lsm-contr.R                 |   21 -
 lsmeans-2.14/lsmeans/R/lsmeans.R                   |   83 +++-
 lsmeans-2.14/lsmeans/R/lsmip.R                     |    4 
 lsmeans-2.14/lsmeans/R/ordinal-support.R           |   59 ++-
 lsmeans-2.14/lsmeans/R/plot.lsm.R                  |    2 
 lsmeans-2.14/lsmeans/R/ref.grid.R                  |  413 ---------------------
 lsmeans-2.14/lsmeans/R/summary.R                   |only
 lsmeans-2.14/lsmeans/build/vignette.rds            |binary
 lsmeans-2.14/lsmeans/inst/NEWS                     |   28 +
 lsmeans-2.14/lsmeans/inst/doc/extending.pdf        |binary
 lsmeans-2.14/lsmeans/inst/doc/using-lsmeans.R      |  154 ++++---
 lsmeans-2.14/lsmeans/inst/doc/using-lsmeans.pdf    |binary
 lsmeans-2.14/lsmeans/inst/doc/using-lsmeans.rnw    |   60 +--
 lsmeans-2.14/lsmeans/man/contrast.Rd               |    5 
 lsmeans-2.14/lsmeans/man/glht.Rd                   |    2 
 lsmeans-2.14/lsmeans/man/lsmeans-package.Rd        |   16 
 lsmeans-2.14/lsmeans/man/lsmeans.Rd                |   22 -
 lsmeans-2.14/lsmeans/man/models.Rd                 |    9 
 lsmeans-2.14/lsmeans/man/pairwise.lsmc.Rd          |   11 
 lsmeans-2.14/lsmeans/man/ref.grid.Rd               |    3 
 lsmeans-2.14/lsmeans/man/ref.grid.class.Rd         |    2 
 lsmeans-2.14/lsmeans/man/summary.Rd                |   26 -
 lsmeans-2.14/lsmeans/man/update.Rd                 |   12 
 lsmeans-2.14/lsmeans/tests/tests1.Rout.save        |   28 -
 lsmeans-2.14/lsmeans/vignettes/lsmeans.bib         |   34 +
 lsmeans-2.14/lsmeans/vignettes/using-lsmeans.rnw   |   60 +--
 37 files changed, 512 insertions(+), 668 deletions(-)

More information about lsmeans at CRAN
Permanent link

Package glpkAPI updated to version 1.3.0 with previous version 1.2.11 dated 2014-11-16

Title: R Interface to C API of GLPK
Description: R Interface to C API of GLPK, needs GLPK Version >= 4.42
Author: Claus Jonathan Fritzemeier [cre], Gabriel Gelius-Dietrich [aut], Louis Luangkesorn [ctb]
Maintainer: Claus Jonathan Fritzemeier

Diff between glpkAPI versions 1.2.11 dated 2014-11-16 and 1.3.0 dated 2015-01-06

 DESCRIPTION                    |   16 +-
 MD5                            |  328 ++++++++++++++++++++---------------------
 README.md                      |only
 build/vignette.rds             |binary
 inst/NEWS.Rd                   |   10 +
 inst/doc/glpk-gmpl-intro.R     |only
 inst/doc/glpk-gmpl-intro.Rnw   |only
 inst/doc/glpk-gmpl-intro.pdf   |only
 inst/doc/glpkAPI.pdf           |binary
 inst/extdata                   |only
 man/addColsGLPK.Rd             |    5 
 man/addRowsGLPK.Rd             |    5 
 man/advBasisGLPK.Rd            |    5 
 man/bfExistsGLPK.Rd            |    5 
 man/bfUpdatedGLPK.Rd           |    5 
 man/checkDupGLPK.Rd            |    5 
 man/copyProbGLPK.Rd            |    5 
 man/cpxBasisGLPK.Rd            |    5 
 man/createIndexGLPK.Rd         |    5 
 man/delColsGLPK.Rd             |    5 
 man/delProbGLPK.Rd             |    5 
 man/delRowsGLPK.Rd             |    5 
 man/deleteIndexGLPK.Rd         |    5 
 man/eraseProbGLPK.Rd           |    5 
 man/factorizeGLPK.Rd           |    5 
 man/findColGLPK.Rd             |    5 
 man/findRowGLPK.Rd             |    5 
 man/getBfcpGLPK.Rd             |    5 
 man/getBheadGLPK.Rd            |    5 
 man/getCbindGLPK.Rd            |    5 
 man/getColDualGLPK.Rd          |    5 
 man/getColDualIptGLPK.Rd       |    5 
 man/getColKindGLPK.Rd          |    5 
 man/getColLowBndGLPK.Rd        |    5 
 man/getColNameGLPK.Rd          |    5 
 man/getColPrimGLPK.Rd          |    5 
 man/getColPrimIptGLPK.Rd       |    5 
 man/getColStatGLPK.Rd          |    5 
 man/getColTypeGLPK.Rd          |    5 
 man/getColUppBndGLPK.Rd        |    5 
 man/getColsDualGLPK.Rd         |    5 
 man/getColsDualIptGLPK.Rd      |    5 
 man/getColsKindGLPK.Rd         |    5 
 man/getColsLowBndsGLPK.Rd      |    5 
 man/getColsPrimGLPK.Rd         |    5 
 man/getColsPrimIptGLPK.Rd      |    5 
 man/getColsStatGLPK.Rd         |    5 
 man/getColsUppBndsGLPK.Rd      |    5 
 man/getDualStatGLPK.Rd         |    5 
 man/getInteriorParmGLPK.Rd     |    5 
 man/getMIPParmGLPK.Rd          |    5 
 man/getMatColGLPK.Rd           |    5 
 man/getMatRowGLPK.Rd           |    5 
 man/getNumBinGLPK.Rd           |    5 
 man/getNumColsGLPK.Rd          |    5 
 man/getNumIntGLPK.Rd           |    5 
 man/getNumNnzGLPK.Rd           |    5 
 man/getNumRowsGLPK.Rd          |    5 
 man/getObjCoefGLPK.Rd          |    5 
 man/getObjCoefsGLPK.Rd         |    5 
 man/getObjDirGLPK.Rd           |    5 
 man/getObjNameGLPK.Rd          |    5 
 man/getObjValGLPK.Rd           |    5 
 man/getObjValIptGLPK.Rd        |    5 
 man/getPrimStatGLPK.Rd         |    5 
 man/getProbNameGLPK.Rd         |    5 
 man/getRbindGLPK.Rd            |    5 
 man/getRiiGLPK.Rd              |    5 
 man/getRowDualGLPK.Rd          |    5 
 man/getRowDualIptGLPK.Rd       |    5 
 man/getRowLowBndGLPK.Rd        |    5 
 man/getRowNameGLPK.Rd          |    5 
 man/getRowPrimGLPK.Rd          |    5 
 man/getRowPrimIptGLPK.Rd       |    5 
 man/getRowStatGLPK.Rd          |    5 
 man/getRowTypeGLPK.Rd          |    5 
 man/getRowUppBndGLPK.Rd        |    5 
 man/getRowsDualGLPK.Rd         |    5 
 man/getRowsDualIptGLPK.Rd      |    5 
 man/getRowsLowBndsGLPK.Rd      |    5 
 man/getRowsPrimGLPK.Rd         |    5 
 man/getRowsPrimIptGLPK.Rd      |    5 
 man/getRowsStatGLPK.Rd         |    5 
 man/getRowsTypesGLPK.Rd        |    5 
 man/getRowsUppBndsGLPK.Rd      |    5 
 man/getSimplexParmGLPK.Rd      |    5 
 man/getSjjGLPK.Rd              |    5 
 man/getSolStatGLPK.Rd          |    5 
 man/getSolStatIptGLPK.Rd       |    5 
 man/getUnbndRayGLPK.Rd         |    5 
 man/glpkAPI-package.Rd         |    5 
 man/glpkConstants.Rd           |    5 
 man/glpkPtr-class.Rd           |    5 
 man/initProbGLPK.Rd            |    5 
 man/loadMatrixGLPK.Rd          |    5 
 man/mipColValGLPK.Rd           |    5 
 man/mipColsValGLPK.Rd          |    5 
 man/mipObjValGLPK.Rd           |    5 
 man/mipRowValGLPK.Rd           |    5 
 man/mipRowsValGLPK.Rd          |    5 
 man/mipStatusGLPK.Rd           |    5 
 man/mplAllocWkspGLPK.Rd        |    5 
 man/mplBuildProbGLPK.Rd        |    5 
 man/mplFreeWkspGLPK.Rd         |    5 
 man/mplGenerateGLPK.Rd         |    5 
 man/mplPostsolveGLPK.Rd        |    5 
 man/mplReadDataGLPK.Rd         |    5 
 man/mplReadModelGLPK.Rd        |    5 
 man/printIptGLPK.Rd            |    5 
 man/printMIPGLPK.Rd            |    5 
 man/printRangesGLPK.Rd         |    5 
 man/printSolGLPK.Rd            |    5 
 man/readIptGLPK.Rd             |    5 
 man/readLPGLPK.Rd              |    5 
 man/readMIPGLPK.Rd             |    5 
 man/readMPSGLPK.Rd             |    5 
 man/readProbGLPK.Rd            |    5 
 man/readSolGLPK.Rd             |    5 
 man/return_codeGLPK.Rd         |    5 
 man/scaleProbGLPK.Rd           |    5 
 man/setBfcpGLPK.Rd             |    5 
 man/setColBndGLPK.Rd           |    5 
 man/setColKindGLPK.Rd          |    5 
 man/setColNameGLPK.Rd          |    5 
 man/setColStatGLPK.Rd          |    5 
 man/setColsBndsGLPK.Rd         |    5 
 man/setColsBndsObjCoefsGLPK.Rd |    5 
 man/setColsKindGLPK.Rd         |    5 
 man/setColsNamesGLPK.Rd        |    5 
 man/setDefaultIptParmGLPK.Rd   |    5 
 man/setDefaultMIPParmGLPK.Rd   |    5 
 man/setDefaultSmpParmGLPK.Rd   |    5 
 man/setInteriorParmGLPK.Rd     |    5 
 man/setMIPParmGLPK.Rd          |    5 
 man/setMatColGLPK.Rd           |    5 
 man/setMatRowGLPK.Rd           |    5 
 man/setObjCoefGLPK.Rd          |    5 
 man/setObjCoefsGLPK.Rd         |    5 
 man/setObjDirGLPK.Rd           |    5 
 man/setObjNameGLPK.Rd          |    5 
 man/setProbNameGLPK.Rd         |    5 
 man/setRhsZeroGLPK.Rd          |    5 
 man/setRiiGLPK.Rd              |    5 
 man/setRowBndGLPK.Rd           |    5 
 man/setRowNameGLPK.Rd          |    5 
 man/setRowStatGLPK.Rd          |    5 
 man/setRowsBndsGLPK.Rd         |    5 
 man/setRowsNamesGLPK.Rd        |    5 
 man/setSimplexParmGLPK.Rd      |    5 
 man/setSjjGLPK.Rd              |    5 
 man/solveInteriorGLPK.Rd       |    5 
 man/solveMIPGLPK.Rd            |    5 
 man/solveSimplexExactGLPK.Rd   |    5 
 man/solveSimplexGLPK.Rd        |    5 
 man/sortMatrixGLPK.Rd          |    5 
 man/status_codeGLPK.Rd         |    5 
 man/stdBasisGLPK.Rd            |    5 
 man/termOutGLPK.Rd             |    5 
 man/unscaleProbGLPK.Rd         |    5 
 man/versionGLPK.Rd             |    5 
 man/warmUpGLPK.Rd              |    5 
 man/writeIptGLPK.Rd            |    5 
 man/writeLPGLPK.Rd             |    5 
 man/writeMIPGLPK.Rd            |    5 
 man/writeMPSGLPK.Rd            |    5 
 man/writeProbGLPK.Rd           |    5 
 man/writeSolGLPK.Rd            |    5 
 vignettes/glpk-gmpl-intro.Rnw  |only
 168 files changed, 657 insertions(+), 482 deletions(-)

More information about glpkAPI at CRAN
Permanent link

Package RUnit updated to version 0.4.28 with previous version 0.4.27 dated 2014-09-19

Title: R Unit Test Framework
Description: R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools
Author: Matthias Burger , Klaus Juenemann , Thomas Koenig
Maintainer: ORPHANED

Diff between RUnit versions 0.4.27 dated 2014-09-19 and 0.4.28 dated 2015-01-06

 DESCRIPTION             |    8 ++++----
 MD5                     |    8 ++++----
 R/exportHTML.r          |    6 +++---
 build/RUnit.pdf         |binary
 inst/unitTests/Makefile |   13 +++++++------
 5 files changed, 18 insertions(+), 17 deletions(-)

More information about RUnit at CRAN
Permanent link

Package PowerTOST updated to version 1.2-05 with previous version 1.2-04 dated 2014-12-19

Title: Power and Sample Size Based on Two One-sided t-Tests (TOST) for (Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for various study designs used for bioequivalence studies. See function known.designs() for study designs covered. Moreover the package contains functions for power and sample size based on 'expected' power in case of uncertain (estimated) variability. ----- Added are functions for the power and sample size for the ratio of two means with normally distributed data on the original scale (based on Fieller's confidence ('fiducial') interval). ----- Contains further functions for power and sample size calculations based on non-inferiority t-test. This is not a TOST procedure but eventually useful if the question of 'non-superiority' must be evaluated. The power and sample size calculations based on non-inferiority test may also performed via 'expected' power in case of uncertain (estimated) variability. ----- Contains functions power.scABEL() and sampleN.scABEL() to calculate power and sample size for the BE decision via scaled (widened) BE acceptance limits based on simulations. Contains further functions power.RSABE() and sampleN.RSABE() to calculate power and sample size for the BE decision via reference scaled ABE criterion according to the FDA procedure based on simulations. Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate power and sample size for the BE decision via the FDA procedure for NTID's based on simulations. ----- Contains functions for power analysis of a sample size plan for ABE (pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA()) analysing power if deviating from assumptions of the plan. ----- Contains further functions for power calculations / samplesize estimation for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre], Helmut Schuetz [aut], Benjamin Lang [ctb]
Maintainer: Detlew Labes

Diff between PowerTOST versions 1.2-04 dated 2014-12-19 and 1.2-05 dated 2015-01-06

 PowerTOST-1.2-04/PowerTOST/R/CVfromCI.R                                    |only
 PowerTOST-1.2-04/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V06.pdf   |only
 PowerTOST-1.2-04/PowerTOST/inst/doc/Implementation_scaledABE_simsV0.06.pdf |only
 PowerTOST-1.2-05/PowerTOST/DESCRIPTION                                     |   14 +++--
 PowerTOST-1.2-05/PowerTOST/MD5                                             |   18 +++----
 PowerTOST-1.2-05/PowerTOST/NEWS                                            |    8 +++
 PowerTOST-1.2-05/PowerTOST/R/CVfromCI_BL.R                                 |only
 PowerTOST-1.2-05/PowerTOST/R/OwensQOwen.R                                  |    3 -
 PowerTOST-1.2-05/PowerTOST/R/pvalue.TOST_Benjamin.R                        |    3 -
 PowerTOST-1.2-05/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V07.pdf   |only
 PowerTOST-1.2-05/PowerTOST/inst/doc/Implementation_scaledABE_simsV0.07.pdf |only
 PowerTOST-1.2-05/PowerTOST/man/CVfromCI.Rd                                 |   25 ++++++----
 PowerTOST-1.2-05/PowerTOST/man/pvalue.TOST.Rd                              |    6 +-
 13 files changed, 48 insertions(+), 29 deletions(-)

More information about PowerTOST at CRAN
Permanent link

New package physiology with initial version 0.2.2
Package: physiology
Title: Calculate Physiological Characteristics of Adults and Children
Version: 0.2.2
Date: 2015-01-03
Authors@R: person("Jack O. Wasey", role=c("aut", "cre"), email="jack@jackwasey.com")
Description: A variety of formulae are provided for estimation of height, weight and fluid compartments of adults and children. Each formula is referenced to the original publication. Warnings can be given for estimation based on input data outside of normal ranges. Future functions will cover more material with a focus on anaesthesia, critical care and peri-operative medicine.
URL: https://github.com/jackwasey/physiology
Depends: R (>= 3.0.2)
Suggests: ggplot2, reshape2, testthat, knitr
License: GPL-3
BugReports: https://github.com/jackwasey/physiology/issues
VignetteBuilder: knitr
Packaged: 2015-01-05 16:01:01 UTC; jwasey1
Author: Jack O. Wasey [aut, cre]
Maintainer: Jack O. Wasey
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 19:49:31

More information about physiology at CRAN
Permanent link

Package nodiv updated to version 1.0.1 with previous version 1.0.0 dated 2014-12-01

Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard

Diff between nodiv versions 1.0.0 dated 2014-12-01 and 1.0.1 dated 2015-01-06

 DESCRIPTION                    |    8 ++--
 MD5                            |   26 ++++++++-------
 NAMESPACE                      |    6 +--
 R/General_figure_functions.R   |    8 +++-
 R/Methods_for_data_objects.R   |   69 ++++++++++++++++++++++++++++++++++-------
 R/Methods_for_result_objects.R |    7 ++++
 R/Node_based_analysis.R        |   19 +++++++----
 R/Prepare_data.R               |   26 ++++++++++++++-
 man/Node_size.Rd               |    2 -
 man/Nspecies.Rd                |   10 +++--
 man/nodiv-package.Rd           |    2 -
 man/plotSOS.Rd                 |    6 ++-
 man/plot_points.Rd             |    5 ++
 tests                          |only
 14 files changed, 145 insertions(+), 49 deletions(-)

More information about nodiv at CRAN
Permanent link

Package mosaic updated to version 0.9.2-2 with previous version 0.9.1-3 dated 2014-08-23

Title: Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used to teach mathematics, statistics, computation and modeling. Funded by the NSF, Project MOSAIC is a community of educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim , Daniel Kaplan , Nicholas Horton
Maintainer: Randall Pruim

Diff between mosaic versions 0.9.1-3 dated 2014-08-23 and 0.9.2-2 dated 2015-01-06

 skeleton/skeleton.Rmd                                                                                       |    4 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.1-3/mosaic/R/MAD.R                                                     |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.1-3/mosaic/demo/example.R                                              |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.1-3/mosaic/demo/phaseplane.R                                           |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.1-3/mosaic/demo/regression.R                                           |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/DESCRIPTION                                                 |   15 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/MD5                                                         |  357 +++++-----
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/NAMESPACE                                                   |   24 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/CIsim.R                                                   |   66 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/Calculus.R                                                |   28 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/aggregatingAux.R                                          |  102 ++
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/aggregatingMeta.R                                         |   71 +
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/binom.test.R                                              |    5 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/chisq.R                                                   |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/collisions.R                                              |   18 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/compareMean.R                                             |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/compareProportion.R                                       |   13 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/confint.R                                                 |   88 +-
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/diffmean.R                                                |   19 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/do.R                                                      |   16 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/docFile.R                                                 |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/dpqrdist.R                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/factorize.R                                               |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/fetchGoogle.R                                             |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/fitModel.R                                                |    4 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/mPlots.R                                                  |  101 +-
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/makeFun.R                                                 |   15 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/maps2.R                                                   |    7 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/mplot.R                                                   |    9 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/msummary.R                                                |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/plotCumfreq.R                                             |    1 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/plotDist.R                                                |  225 ++----
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/plotFun.R                                                 |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/prop.test.R                                               |    5 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/read.file.R                                               |   11 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/swap.R                                                    |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/tally.R                                                   |   51 +
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/themes.R                                                  |  125 ++-
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/utils.R                                                   |   38 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/xchisq.test.R                                             |   36 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/xpnorm.R                                                  |   16 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/R/xqqmath.R                                                 |    1 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/demo/00Index                                                |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/demo/funplots.R                                             |    8 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/demo/histogram.R                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/demo/leastsquares.R                                         |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/NEWS.Rd                                                |   22 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/doc/GraphicsWithMosaic.html                            |   47 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/doc/V2StartTeaching.pdf                                |binary
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/doc/V3Commands.pdf                                     |binary
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/doc/mosaicresources.Rnw                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/doc/mosaicresources.pdf                                |binary
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/rmarkdown/templates/mosaic-fancy/skeleton/skeleton.Rmd |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/rmarkdown/templates/mosaic-plain-pdf                   |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/rmarkdown/templates/mosaic-plain/template.yaml         |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/tests/test-groupwiseModels.R                           |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/inst/tests/test-tabulation.R                                |    4 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/Broyden.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/CIAdata.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/CIsim.Rd                                                |   53 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/Calculus.Rd                                             |   28 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/FunctionsFromData.Rd                                    |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/MAD.Rd                                                  |   31 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/MAD_.Rd                                                 |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/TukeyHSD.lm.Rd                                          |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/adapt_seq.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/aggregating.Rd                                          |   20 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/aggregatingAux.Rd                                       |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/aggregatingFunction1.Rd                                 |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/aggregatingFunction2.Rd                                 |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/as-xtabs.Rd                                             |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/bargraph.Rd                                             |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/binom.test.Rd                                           |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/cdist.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/chisq.Rd                                                |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/clustering.Rd                                           |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/coef.Rd                                                 |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/columns.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/compareMean.Rd                                          |   11 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/compareProportion.Rd                                    |   14 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/confint.Rd                                              |   52 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/cross.Rd                                                |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/deg2rad.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/deltaMethod.Rd                                          |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/derivedFactor.Rd                                        |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/dfapply.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/diffmean.Rd                                             |   13 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/do.Rd                                                   |   15 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/docFile.Rd                                              |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/dotPlot.Rd                                              |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/ediff.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/evalFormula.Rd                                          |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/evalSubFormula.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/expandFun.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/factorize.Rd                                            |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fav_stats.Rd                                            |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fetchData.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fetchGapminder.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fetchGoogle.Rd                                          |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/findZeros.Rd                                            |   18 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/findZerosMult.Rd                                        |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fitModel.Rd                                             |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fitSpline.Rd                                            |   14 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fitdistr.Rd                                             |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fortify.Rd                                              |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/fractions.Rd                                            |   10 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/freqpolygon.Rd                                          |   22 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/getVarFormula.Rd                                        |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/googleMap.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/inferArgs.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/integrateODE.Rd                                         |    8 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/interval.Rd                                             |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/is.wholenumber.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/joinFrames.Rd                                           |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/ladd.Rd                                                 |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/latlon2xyz.Rd                                           |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/linear.algebra.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/logical2factor.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/logit.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mPlotting.Rd                                            |   15 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mUSMap.Rd                                               |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mWorldMap.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/makeColorscheme.Rd                                      |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/makeFun.Rd                                              |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/makeMap.Rd                                              |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mid.Rd                                                  |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mm.Rd                                                   |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/modelVars.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mosaic-internal.Rd                                      |   28 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mosaic-package.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mosaic.options.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mosaicformula.Rd                                        |    8 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/mplot.Rd                                                |   68 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/msummary.Rd                                             |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/named.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/nicenames.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/ntiles.Rd                                               |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/numD.Rd                                                 |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/oddsRatio.Rd                                            |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/panel.levelcontourplot.Rd                               |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/panel.lmbands.Rd                                        |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/panel.plotFun.Rd                                        |   24 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/panel.plotFun1.Rd                                       |   24 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/parseFormula.Rd                                         |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/pdist.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/perctable.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/plotCumfreq.Rd                                          |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/plotDist.Rd                                             |   19 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/plotFun.Rd                                              |   40 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/plotPoints.Rd                                           |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/pqrdata.Rd                                              |    8 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/pqrdata2.Rd                                             |   26 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/project-methods.Rd                                      |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/prop.Rd                                                 |   17 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/prop.test.Rd                                            |   16 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/qdist.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/r.squared.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rand.Rd                                                 |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/read.file.Rd                                            |    8 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/repeater-class.Rd                                       |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/resample.Rd                                             |   22 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rescale.Rd                                              |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rflip.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rfun.Rd                                                 |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rgeo-internals.Rd                                       |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rgeo.Rd                                                 |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rkintegrate.Rd                                          |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rspin.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rsquared.Rd                                             |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/rstudio.Rd                                              |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/simplify.Rd                                             |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/sp2df.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/standardName.Rd                                         |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/statTally.Rd                                            |   14 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/surround.Rd                                             |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/swap.Rd                                                 |only
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/symbolicD.Rd                                            |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/symbolicInt.Rd                                          |    6 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/tally.Rd                                                |   46 -
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/theme_map.Rd                                            |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/themes.Rd                                               |    9 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/ttest.Rd                                                |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/xchisq.test.Rd                                          |    7 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/xhistogram.Rd                                           |   24 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/xpnorm.Rd                                               |   12 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/xqqmath.Rd                                              |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/man/zscore.Rd                                               |    2 
 tmp/cranberry5dfb3a3c204e/mosaic-0.9.2-2/mosaic/vignettes/mosaicresources.Rnw                               |    2 
 188 files changed, 1602 insertions(+), 1104 deletions(-)

More information about mosaic at CRAN
Permanent link

Package gWidgets2tcltk updated to version 1.0-4 with previous version 1.0-3 dated 2014-12-06

Title: Toolkit Implementation of gWidgets2 for tcltk
Description: Port of the gWidgets2 API for the tcltk package.
Author: John Verzani
Maintainer: John Verzani

Diff between gWidgets2tcltk versions 1.0-3 dated 2014-12-06 and 1.0-4 dated 2015-01-06

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 R/gtable.R  |   43 ++++++++++++++++++++++++-------------------
 3 files changed, 29 insertions(+), 24 deletions(-)

More information about gWidgets2tcltk at CRAN
Permanent link

New package jwutil with initial version 1.0.2
Package: jwutil
Title: Utilities for Data Manipulation, Disk Caching, Testing
Version: 1.0.2
Date: 2015-01-03
Authors@R: person("Jack O. Wasey", role = c("aut", "cre"), email = "jack@jackwasey.com")
Description: This is a set of simple utilities for various data manipulation and caching tasks. The goal is to use base tools well, without bringing in any dependencies. Main areas of interest are data frame manipulation, such as converting factors in multiple binary indicator columns, and disk caching of data frames (which is optionally done by date range). There are testing functions which provide testthat expectations to permute arguments to function calls. There are functions and data to test extreme numbers, dates, and bad input of various kinds which should allow testing failure and corner cases. The test suite has many examples of usage.
URL: https://github.com/jackwasey/jwutil
Depends: R (>= 3.1.1)
Suggests: testthat
License: GPL-3
BugReports: https://github.com/jackwasey/jwutil/issues
Encoding: UTF-8
Packaged: 2015-01-06 13:34:04 UTC; jwasey1
Author: Jack O. Wasey [aut, cre]
Maintainer: Jack O. Wasey
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 19:50:43

More information about jwutil at CRAN
Permanent link

Package TAM updated to version 1.3 with previous version 1.2 dated 2014-11-22

Title: Test Analysis Modules
Description: The package includes marginal and joint maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Nominal Item Response, Structured Latent Class Analysis, Mixture Distribution IRT Models, Located Latent Class Models, Cognitive Diagnostic Models). Latent regression models and plausible value imputation are also supported.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch

Diff between TAM versions 1.2 dated 2014-11-22 and 1.3 dated 2015-01-06

 TAM-1.2/TAM/R/TAM-internal_intermediate.R                    |only
 TAM-1.2/TAM/R/TAM-internal_mstep.R                           |only
 TAM-1.2/TAM/R/TAM-internal_postproc.R                        |only
 TAM-1.2/TAM/R/tam.mml.3pl.postproc.R                         |only
 TAM-1.3/TAM/DESCRIPTION                                      |   25 
 TAM-1.3/TAM/MD5                                              |  163 +++--
 TAM-1.3/TAM/NAMESPACE                                        |   76 ++
 TAM-1.3/TAM/R/IRT.factor.scores.tam.R                        |   18 
 TAM-1.3/TAM/R/IRT.irfprob.tam.R                              |   15 
 TAM-1.3/TAM/R/IRT.likelihood.TAM.R                           |   28 
 TAM-1.3/TAM/R/Mstep_slope.v2.R                               |only
 TAM-1.3/TAM/R/TAM.ic.R                                       |only
 TAM-1.3/TAM/R/TAM.itempartable.R                             |only
 TAM-1.3/TAM/R/add.colnames.resp.R                            |only
 TAM-1.3/TAM/R/anova.tam.R                                    |    7 
 TAM-1.3/TAM/R/calc_exp_TK.R                                  |only
 TAM-1.3/TAM/R/calc_posterior.v2.R                            |only
 TAM-1.3/TAM/R/calc_prob.v5.R                                 |only
 TAM-1.3/TAM/R/change.grep.lavpartable.R                      |only
 TAM-1.3/TAM/R/create.deltaDesign.R                           |only
 TAM-1.3/TAM/R/designMatrices.R                               |   38 +
 TAM-1.3/TAM/R/designMatrices.mfr2.R                          |    6 
 TAM-1.3/TAM/R/designMatrices_aux.R                           |   33 +
 TAM-1.3/TAM/R/doparse.R                                      |only
 TAM-1.3/TAM/R/extend.label.group.R                           |only
 TAM-1.3/TAM/R/latreg.mstep.regression.R                      |only
 TAM-1.3/TAM/R/latreg_TAM.ic.R                                |only
 TAM-1.3/TAM/R/lavaanify.IRT.R                                |  324 +----------
 TAM-1.3/TAM/R/lavaanify.grep.nonlinear.R                     |only
 TAM-1.3/TAM/R/lavaanify.sirt.v1.R                            |only
 TAM-1.3/TAM/R/lavpartable.grep.underbrace.R                  |only
 TAM-1.3/TAM/R/lavpartable2lavsyntax.R                        |only
 TAM-1.3/TAM/R/logLik_tam.R                                   |    3 
 TAM-1.3/TAM/R/mml.3pl.TAM.ic.R                               |only
 TAM-1.3/TAM/R/mml.3pl.TAM.itempartable.R                     |only
 TAM-1.3/TAM/R/mml.3pl.calc_prob.v5.R                         |only
 TAM-1.3/TAM/R/mml.3pl.distrubutionmoments.R                  |only
 TAM-1.3/TAM/R/mstep.regression.R                             |only
 TAM-1.3/TAM/R/plot.tam.R                                     |  210 +++++--
 TAM-1.3/TAM/R/plotDevianceTAM.R                              |    2 
 TAM-1.3/TAM/R/rbind.twomatrices.R                            |only
 TAM-1.3/TAM/R/remove.duplicated.variances.lavsyn.R           |only
 TAM-1.3/TAM/R/split.syn.string.R                             |only
 TAM-1.3/TAM/R/stud_prior.R                                   |only
 TAM-1.3/TAM/R/summary.tam.R                                  |  133 ++--
 TAM-1.3/TAM/R/summary.tam.mml.3pl.R                          |    7 
 TAM-1.3/TAM/R/summary.tamaan.3pl.intro.R                     |only
 TAM-1.3/TAM/R/summary.tamaan.R                               |only
 TAM-1.3/TAM/R/summary.tamaan.aux.R                           |only
 TAM-1.3/TAM/R/taamanify.proc.lavaanmodel.R                   |only
 TAM-1.3/TAM/R/tam.calc.counts.R                              |only
 TAM-1.3/TAM/R/tam.jml.R                                      |    4 
 TAM-1.3/TAM/R/tam.jml2.R                                     |    3 
 TAM-1.3/TAM/R/tam.latreg.R                                   |only
 TAM-1.3/TAM/R/tam.mml.2pl.R                                  |   11 
 TAM-1.3/TAM/R/tam.mml.3pl.R                                  |  150 +++--
 TAM-1.3/TAM/R/tam.mml.3pl.algorithm.R                        |   84 --
 TAM-1.3/TAM/R/tam.mml.3pl.est.intercepts.R                   |   18 
 TAM-1.3/TAM/R/tam.mml.3pl.est.slopes.R                       |   57 +
 TAM-1.3/TAM/R/tam.mml.R                                      |   27 
 TAM-1.3/TAM/R/tam.mml.mfr.R                                  |    2 
 TAM-1.3/TAM/R/tam.modelfit.R                                 |   12 
 TAM-1.3/TAM/R/tam.pv.R                                       |  233 +++++--
 TAM-1.3/TAM/R/tamaan.3pl.lca.R                               |only
 TAM-1.3/TAM/R/tamaan.3pl.loclca.R                            |only
 TAM-1.3/TAM/R/tamaan.3pl.mixture.R                           |only
 TAM-1.3/TAM/R/tamaan.3pl.olca.R                              |only
 TAM-1.3/TAM/R/tamaan.3pl.trait.R                             |only
 TAM-1.3/TAM/R/tamaan.R                                       |only
 TAM-1.3/TAM/R/tamaanify.R                                    |only
 TAM-1.3/TAM/R/tamaanify.create.A.R                           |only
 TAM-1.3/TAM/R/tamaanify.create.Q.R                           |only
 TAM-1.3/TAM/R/tamaanify.define.method.R                      |only
 TAM-1.3/TAM/R/tamaanify.grep.linequations.R                  |only
 TAM-1.3/TAM/R/tamaanify.modelconstraint.loadings.R           |only
 TAM-1.3/TAM/R/tamaanify.modelprior.R                         |only
 TAM-1.3/TAM/R/tamaanify.proc.analysis.R                      |only
 TAM-1.3/TAM/R/tamaanify.proc.items.R                         |only
 TAM-1.3/TAM/R/tamaanify.proc.itemtype.R                      |only
 TAM-1.3/TAM/R/tamaanify.proc.loadings.B.fixed.R              |only
 TAM-1.3/TAM/R/tamaanify.proc.modelconstraint.R               |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.deltadesign.R            |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.designMatrices.LCA.R     |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.designMatrices.LOCLCA.R  |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.designMatrices.MIXTURE.R |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.designMatrices.OLCA.R    |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pl.designMatrices.TRAIT.R   |only
 TAM-1.3/TAM/R/tamaanify.tam.mml.3pldesignMatrices.R          |only
 TAM-1.3/TAM/R/tamaanify.variance.fixed.R                     |only
 TAM-1.3/TAM/R/tampv2datalist.R                               |only
 TAM-1.3/TAM/data/data.geiser.rda                             |only
 TAM-1.3/TAM/data/data.janssen.rda                            |only
 TAM-1.3/TAM/data/data.janssen2.rda                           |only
 TAM-1.3/TAM/inst/NEWS                                        |   73 ++
 TAM-1.3/TAM/man/IRT.factor.scores.tam.Rd                     |   10 
 TAM-1.3/TAM/man/IRT.irfprob.tam.Rd                           |   10 
 TAM-1.3/TAM/man/IRT.likelihood.tam.Rd                        |   17 
 TAM-1.3/TAM/man/TAM-internal.Rd                              |    2 
 TAM-1.3/TAM/man/TAM-package.Rd                               |   16 
 TAM-1.3/TAM/man/anova.tam.Rd                                 |   39 -
 TAM-1.3/TAM/man/data.examples.Rd                             |    1 
 TAM-1.3/TAM/man/data.geiser.Rd                               |only
 TAM-1.3/TAM/man/data.janssen.Rd                              |only
 TAM-1.3/TAM/man/designMatrices.Rd                            |    4 
 TAM-1.3/TAM/man/doparse.Rd                                   |only
 TAM-1.3/TAM/man/lavaanify.IRT.Rd                             |  116 +++
 TAM-1.3/TAM/man/plot.tam.Rd                                  |   34 +
 TAM-1.3/TAM/man/tam.fit.Rd                                   |    4 
 TAM-1.3/TAM/man/tam.latreg.Rd                                |only
 TAM-1.3/TAM/man/tam.mml.3pl.Rd                               |  188 +++++-
 TAM-1.3/TAM/man/tam.mml.Rd                                   |  316 +++++++++-
 TAM-1.3/TAM/man/tam.modelfit.Rd                              |   15 
 TAM-1.3/TAM/man/tam.pv.Rd                                    |  134 ++++
 TAM-1.3/TAM/man/tam.threshold.Rd                             |   41 +
 TAM-1.3/TAM/man/tam.wle.Rd                                   |   94 +++
 TAM-1.3/TAM/man/tamaan.Rd                                    |only
 TAM-1.3/TAM/man/tamaanify.Rd                                 |only
 TAM-1.3/TAM/man/tampv2datalist.Rd                            |only
 TAM-1.3/TAM/src/tam_caux.c                                   |   50 +
 119 files changed, 2014 insertions(+), 839 deletions(-)

More information about TAM at CRAN
Permanent link

Package investr updated to version 1.2.1 with previous version 1.2.0 dated 2014-12-23

Title: Inverse Estimation/Calibration Functions
Description: Functions to facilitate inverse estimation/calibration in linear, nonlinear, and (linear) mixed models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

Diff between investr versions 1.2.0 dated 2014-12-23 and 1.2.1 dated 2015-01-06

 DESCRIPTION                  |    6 +++---
 MD5                          |   23 ++++++++++++-----------
 NEWS                         |    9 +++++++--
 R/calibrate.R                |   13 +++++++++++--
 R/invest.R                   |   16 +++++++++-------
 R/plotFit.R                  |   22 ++++++----------------
 R/utilities.R                |   15 +++++++++++++++
 man/AnyNA.Rd                 |only
 man/calibrate.Rd             |   13 +++++++++++--
 man/invest.Rd                |   12 +++++++-----
 man/investr-package.Rd       |   10 ++++++----
 man/plotFit.Rd               |    4 ++--
 tests/testthat/test-invest.R |    4 ++++
 13 files changed, 93 insertions(+), 54 deletions(-)

More information about investr at CRAN
Permanent link

Package hitandrun updated to version 0.5 with previous version 0.4-2 dated 2014-08-04

Title: "Hit and Run" and "Shake and Bake" for Sampling Uniformly From Convex Shapes
Description: The "Hit and Run" Markov Chain Monte Carlo method for sampling uniformly from convex shapes defined by linear constraints, and the "Shake and Bake" method for sampling from the boundary of such shapes. Includes specialized functions for sampling normalized weights with arbitrary linear constraints.
Author: Gert van Valkenhoef, Tommi Tervonen
Maintainer: Gert van Valkenhoef

Diff between hitandrun versions 0.4-2 dated 2014-08-04 and 0.5 dated 2015-01-06

 DESCRIPTION              |   13 +++++-----
 MD5                      |   31 ++++++++++++++----------
 NAMESPACE                |    8 +++---
 NEWS                     |    9 +++++++
 R/sample.R               |   60 +++++++++++++++++++++++++++++++++++++++++++----
 R/shakeandbake.R         |only
 R/transformSimplex.R     |    4 ++-
 man/findFace.Rd          |only
 man/har-constraint.Rd    |    2 -
 man/hitandrun-package.Rd |    5 ++-
 man/sab.Rd               |only
 man/shakeandbake.Rd      |only
 src/Makevars             |    3 +-
 src/bbReject.c           |    2 -
 src/har.c                |    2 -
 src/har.h                |   21 +++++++++++++++-
 src/hit.c                |    4 +--
 src/intersect.c          |only
 src/rsabDir.c            |only
 src/sab.c                |only
 20 files changed, 128 insertions(+), 36 deletions(-)

More information about hitandrun at CRAN
Permanent link

Package forecast updated to version 5.8 with previous version 5.7 dated 2014-12-17

Title: Forecasting functions for time series and linear models
Description: Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman with contributions from George Athanasopoulos, Slava Razbash, Drew Schmidt, Zhenyu Zhou, Yousaf Khan, Christoph Bergmeir, Earo Wang
Maintainer: Rob J Hyndman

Diff between forecast versions 5.7 dated 2014-12-17 and 5.8 dated 2015-01-06

 ChangeLog    |    4 ++++
 DESCRIPTION  |    8 ++++----
 MD5          |   10 +++++-----
 R/guerrero.R |   11 ++++++-----
 R/season.R   |    7 +++++++
 README.md    |    2 +-
 6 files changed, 27 insertions(+), 15 deletions(-)

More information about forecast at CRAN
Permanent link

Package DAMisc updated to version 1.3 with previous version 1.2 dated 2013-04-09

Title: Dave Armstrong's Miscellaneous Functions
Description: This package contains a miscellaneous set of functions I use in my teaching either at UWM or the ICPSR Summer Program. Broadly, the functions help with presentation and interpretation of GLMs.
Author: Dave Armstrong (UW-Milwaukee, Department of Political Science)
Maintainer: Dave Armstrong

Diff between DAMisc versions 1.2 dated 2013-04-09 and 1.3 dated 2015-01-06

 DAMisc-1.2/DAMisc/man/multiChange.Rd     |only
 DAMisc-1.3/DAMisc/DESCRIPTION            |   17 
 DAMisc-1.3/DAMisc/MD5                    |   36 
 DAMisc-1.3/DAMisc/NAMESPACE              |   74 +-
 DAMisc-1.3/DAMisc/R/DAMisc_functions.R   | 1118 ++++++++++++++++++++++++++++---
 DAMisc-1.3/DAMisc/README.md              |only
 DAMisc-1.3/DAMisc/man/DAMisc-package.Rd  |   10 
 DAMisc-1.3/DAMisc/man/aveEffPlot.Rd      |only
 DAMisc-1.3/DAMisc/man/combTest.Rd        |only
 DAMisc-1.3/DAMisc/man/crSpanTest.Rd      |    3 
 DAMisc-1.3/DAMisc/man/glmChange.Rd       |    6 
 DAMisc-1.3/DAMisc/man/glmChange2.Rd      |only
 DAMisc-1.3/DAMisc/man/intQualQuant.Rd    |   32 
 DAMisc-1.3/DAMisc/man/mnlAveEffPlot.Rd   |only
 DAMisc-1.3/DAMisc/man/mnlChange.Rd       |only
 DAMisc-1.3/DAMisc/man/mnlChange2.Rd      |only
 DAMisc-1.3/DAMisc/man/mnlfit.Rd          |only
 DAMisc-1.3/DAMisc/man/ordAveEffPlot.Rd   |only
 DAMisc-1.3/DAMisc/man/ordChange.Rd       |    8 
 DAMisc-1.3/DAMisc/man/ordChange2.Rd      |only
 DAMisc-1.3/DAMisc/man/ordFit.Rd          |only
 DAMisc-1.3/DAMisc/man/panel.ci.Rd        |    2 
 DAMisc-1.3/DAMisc/man/panel.doublerug.Rd |only
 DAMisc-1.3/DAMisc/man/panel.transci.Rd   |only
 DAMisc-1.3/DAMisc/man/prepanel.ci.Rd     |    2 
 DAMisc-1.3/DAMisc/man/ziChange.Rd        |    3 
 26 files changed, 1149 insertions(+), 162 deletions(-)

More information about DAMisc at CRAN
Permanent link

New package CEGO with initial version 1.0.1108
Package: CEGO
Version: 1.0.1108
Title: Combinatorial Efficient Global Optimization
Author: Martin Zaefferer
Maintainer: Martin Zaefferer
Description: Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.
License: GPL (>= 3)
Type: Package
LazyLoad: yes
Depends: R (>= 3.0.0)
Imports: MASS, stats, DEoptim
Suggests: nloptr
ByteCompile: TRUE
Date: 06.01.2015
Date/Publication: 2015-01-06 17:35:45
Packaged: 2015-01-06 14:58:19 UTC; Martin
NeedsCompilation: yes
Repository: CRAN

More information about CEGO at CRAN
Permanent link

Package strvalidator updated to version 1.4.0 with previous version 1.3.1 dated 2014-10-15

Title: Process Control And Internal Validation Of Forensic STR Kits
Description: strvalidator is an open source platform for validation and process control. It provide tools to analyse data from internal validation of forensic short tandem repeat (STR) kits. The tools are developed to provide the necessary data to conform with the ENFSI guidelines for internal validation. More information about each function can be found in the respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson

Diff between strvalidator versions 1.3.1 dated 2014-10-15 and 1.4.0 dated 2015-01-06

 DESCRIPTION                            |   13 
 MD5                                    |  310 +++----
 NAMESPACE                              |    9 
 NEWS                                   |   37 
 R/addColor.r                           |   32 
 R/addData.r                            |   85 +-
 R/addData_gui.r                        |    8 
 R/addMarker.r                          |   15 
 R/addMarker_gui.r                      |    2 
 R/addSize_gui.r                        |   11 
 R/calculateBalance.r                   |   45 -
 R/calculateBalance_gui.r               |   23 
 R/calculateCapillary.r                 |   51 -
 R/calculateCapillary_gui.r             |    4 
 R/calculateDropout.r                   |    9 
 R/calculateDropout_gui.r               |   22 
 R/calculatePullup.r                    |only
 R/calculatePullup_gui.r                |only
 R/calculateResultType.r                |  107 +-
 R/calculateResultType_gui.r            |   10 
 R/calculateStutter.r                   |   15 
 R/calculateStutter_gui.r               |   26 
 R/checkDataset.r                       |    2 
 R/combineBinsAndPanels.r               |    2 
 R/combine_gui.r                        |    2 
 R/compact.r                            |only
 R/detectKit.r                          |    2 
 R/editData_gui.r                       |    4 
 R/export.r                             |   17 
 R/export_gui.r                         |    2 
 R/filterProfile.r                      |   53 -
 R/filterProfile_gui.r                  |    6 
 R/generateEPG.r                        |only
 R/generateEPG_gui.r                    |only
 R/getDb.r                              |   13 
 R/getKit.r                             |   20 
 R/heightToPeak.r                       |only
 R/import.r                             |   49 -
 R/import_gui.r                         |    4 
 R/makeKit_gui.r                        |  373 ++++-----
 R/modelDropout_gui.r                   |   87 +-
 R/plotBalance_gui.r                    |   37 
 R/plotDropout_gui.r                    |    2 
 R/plotPrecision_gui.r                  |    2 
 R/plotPullup_gui.r                     |only
 R/plotStutter_gui.r                    |   61 -
 R/readBinsFile.r                       |    9 
 R/readPanelsFile.r                     |    9 
 R/sortMarker.r                         |   11 
 R/strvalidator.r                       |  230 ++++-
 R/tablePrecision_gui.r                 |    4 
 R/trim.r                               |   53 -
 R/trim_gui.r                           |    4 
 README.md                              |   45 -
 inst/extdata/kit.txt                   | 1363 ++++++++++++++++++++++-----------
 man/addColor.Rd                        |    6 
 man/addData.Rd                         |   22 
 man/addData_gui.Rd                     |    2 
 man/addDye_gui.Rd                      |    2 
 man/addMarker.Rd                       |    6 
 man/addMarker_gui.Rd                   |    2 
 man/addSize.Rd                         |    2 
 man/addSize_gui.Rd                     |    2 
 man/calculateBalance.Rd                |   10 
 man/calculateBalance_gui.Rd            |    2 
 man/calculateCapillary.Rd              |   10 
 man/calculateCapillary_gui.Rd          |    2 
 man/calculateConcordance.Rd            |    2 
 man/calculateConcordance_gui.Rd        |    2 
 man/calculateDropout.Rd                |    8 
 man/calculateDropout_gui.Rd            |    2 
 man/calculateHeight.Rd                 |    8 
 man/calculateHeight_gui.Rd             |    2 
 man/calculateHeterozygous.Rd           |    2 
 man/calculateHeterozygous_gui.Rd       |    2 
 man/calculateMixture.Rd                |    2 
 man/calculateMixture_gui.Rd            |    2 
 man/calculateOL.Rd                     |    2 
 man/calculateOL_gui.Rd                 |    2 
 man/calculateOverlap.Rd                |    2 
 man/calculateOverlap_gui.Rd            |    2 
 man/calculatePeaks.Rd                  |    6 
 man/calculatePeaks_gui.Rd              |    2 
 man/calculatePullup.Rd                 |only
 man/calculatePullup_gui.Rd             |only
 man/calculateResultType.Rd             |   26 
 man/calculateResultType_gui.Rd         |    2 
 man/calculateStutter.Rd                |    8 
 man/calculateStutter_gui.Rd            |    2 
 man/checkDataset.Rd                    |    2 
 man/checkSubset.Rd                     |    2 
 man/checkSubset_gui.Rd                 |    2 
 man/colNames.Rd                        |    2 
 man/combineBinsAndPanels.Rd            |    4 
 man/combine_gui.Rd                     |    2 
 man/compact.Rd                         |only
 man/cropData_gui.Rd                    |    2 
 man/detectKit.Rd                       |    2 
 man/editData_gui.Rd                    |    2 
 man/export.Rd                          |    6 
 man/export_gui.Rd                      |    2 
 man/filterProfile.Rd                   |   18 
 man/filterProfile_gui.Rd               |    2 
 man/generateEPG.Rd                     |only
 man/generateEPG_gui.Rd                 |only
 man/getDb.Rd                           |    6 
 man/getKit.Rd                          |    4 
 man/ggsave_gui.Rd                      |    2 
 man/guessProfile.Rd                    |    2 
 man/guessProfile_gui.Rd                |    2 
 man/heightToPeak.Rd                    |only
 man/import.Rd                          |   12 
 man/import_gui.Rd                      |    2 
 man/listObjects.Rd                     |    2 
 man/loadPackage.Rd                     |    2 
 man/makeKit_gui.Rd                     |    2 
 man/modelDropout_gui.Rd                |    2 
 man/plotBalance_gui.Rd                 |    4 
 man/plotCapillary_gui.Rd               |    2 
 man/plotDistribution_gui.Rd            |    2 
 man/plotDropout_gui.Rd                 |    2 
 man/plotKit_gui.Rd                     |    2 
 man/plotPeaks_gui.Rd                   |    2 
 man/plotPrecision_gui.Rd               |    2 
 man/plotPullup_gui.Rd                  |only
 man/plotResultType_gui.Rd              |    2 
 man/plotStutter_gui.Rd                 |    2 
 man/readBinsFile.Rd                    |    6 
 man/readPanelsFile.Rd                  |    6 
 man/ref1.Rd                            |    2 
 man/ref11.Rd                           |    2 
 man/ref2.Rd                            |    2 
 man/ref3.Rd                            |    2 
 man/ref4.Rd                            |    2 
 man/ref51.Rd                           |    2 
 man/ref52.Rd                           |    2 
 man/saveObject.Rd                      |    2 
 man/set1.Rd                            |    2 
 man/set2.Rd                            |    2 
 man/set3.Rd                            |    2 
 man/set4.Rd                            |    2 
 man/set5.Rd                            |    2 
 man/slim.Rd                            |    2 
 man/slim_gui.Rd                        |    2 
 man/sortMarker.Rd                      |    6 
 man/strValidator-package.Rd            |    2 
 man/strvalidator.Rd                    |    2 
 man/tableBalance.Rd                    |    2 
 man/tableBalance_gui.Rd                |    2 
 man/tableCapillary.Rd                  |    2 
 man/tableCapillary_gui.Rd              |    2 
 man/tablePrecision.Rd                  |    2 
 man/tablePrecision_gui.Rd              |    2 
 man/tableStutter.Rd                    |    2 
 man/tableStutter_gui.Rd                |    2 
 man/trim.Rd                            |   16 
 man/trim_gui.Rd                        |    2 
 tests/testthat/test-calculateBalance.r |   52 -
 tests/testthat/test-calculateDropout.r |   16 
 tests/testthat/test-calculateStutter.r |   40 
 tests/testthat/test-filterProfile.r    |   60 -
 tests/testthat/test-tableBalance.r     |    8 
 tests/testthat/test-trim.r             |   44 -
 163 files changed, 2370 insertions(+), 1496 deletions(-)

More information about strvalidator at CRAN
Permanent link

Package spdep updated to version 0.5-81 with previous version 0.5-77 dated 2014-09-19

Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand

Diff between spdep versions 0.5-77 dated 2014-09-19 and 0.5-81 dated 2015-01-06

 ChangeLog                     |  174 ++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                   |   22 ++---
 MD5                           |  134 ++++++++++++++++----------------
 NAMESPACE                     |    4 
 R/ME.R                        |    5 -
 R/SpatialFiltering.R          |    1 
 R/aple.R                      |    3 
 R/aple.mc.R                   |    9 +-
 R/edit.nb.R                   |    1 
 R/eigenw.R                    |    3 
 R/error.spsarlm.R             |    5 -
 R/globalG.R                   |    8 +
 R/impacts.R                   |   16 ++-
 R/jacobian.R                  |   22 ++---
 R/jacobian_setup.R            |   12 ++
 R/kpgm_new.R                  |    6 -
 R/lag.spsarlm.R               |    1 
 R/lee.test.R                  |    2 
 R/listw2Matrix.R              |   11 ++
 R/listw2sn.R                  |    9 +-
 R/mcmcsamp.R                  |    6 -
 R/mess.R                      |    3 
 R/nb2blocknb.R                |    3 
 R/nb2listw.R                  |    4 
 R/nb2mat.R                    |    2 
 R/nbcosts.R                   |   18 +++-
 R/prunecost.R                 |   16 ++-
 R/read.gal.R                  |    4 
 R/s2sls.R                     |    1 
 R/sacsarlm.R                  |    1 
 R/sarlm.R                     |    4 
 R/spautolm.R                  |    3 
 R/utils.R                     |    2 
 build/vignette.rds            |binary
 inst/ChangeLog                |  174 ++++++++++++++++++++++++++++++++++++++++++
 inst/doc/CO69.pdf             |binary
 inst/doc/SpatialFiltering.pdf |binary
 inst/doc/nb.pdf               |binary
 inst/doc/nb_igraph.R          |only
 inst/doc/nb_igraph.Rmd        |only
 inst/doc/nb_igraph.html       |only
 inst/doc/sids.R               |   43 +++++-----
 inst/doc/sids.Rnw             |    1 
 inst/doc/sids.pdf             |binary
 man/aple.mc.Rd                |    2 
 man/as_dgRMatrix_listw.Rd     |   22 ++---
 man/boston.Rd                 |   68 ++++++++--------
 man/compon.Rd                 |   14 +++
 man/edit.nb.Rd                |    3 
 man/eigenw.Rd                 |   19 ++++
 man/errorsarlm.Rd             |    3 
 man/globalG.test.Rd           |   16 ++-
 man/gstsls.Rd                 |    2 
 man/house.Rd                  |   48 +++++------
 man/impacts.sarlm.Rd          |   18 +---
 man/invIrM.Rd                 |    4 
 man/lagsarlm.Rd               |    4 
 man/mat2listw.Rd              |    2 
 man/nblag.Rd                  |   14 +++
 man/sacsarlm.Rd               |    2 
 man/set.mcOption.Rd           |    4 
 man/skater.Rd                 |    2 
 man/spautolm.Rd               |   24 +----
 man/trW.Rd                    |    6 -
 src/card.c                    |   13 ++-
 src/dnn.c                     |    4 
 src/insiders.c                |    4 
 src/nbdists.c                 |   10 +-
 vignettes/nb_igraph.Rmd       |only
 vignettes/sids.Rnw            |    1 
 70 files changed, 758 insertions(+), 284 deletions(-)

More information about spdep at CRAN
Permanent link

Package RSiteCatalyst updated to version 1.4.3 with previous version 1.4.2 dated 2014-12-03

Title: R Client for Adobe Analytics API v1.4
Description: Functions for interacting with the Adobe Analytics API v1.4 (https://api.omniture.com/admin/1.4/rest/)
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch

Diff between RSiteCatalyst versions 1.4.2 dated 2014-12-03 and 1.4.3 dated 2015-01-06

 RSiteCatalyst-1.4.2/RSiteCatalyst/README.md                              |only
 RSiteCatalyst-1.4.3/RSiteCatalyst/DESCRIPTION                            |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/MD5                                    |  251 ++++++----
 RSiteCatalyst-1.4.3/RSiteCatalyst/NAMESPACE                              |    9 
 RSiteCatalyst-1.4.3/RSiteCatalyst/NEWS                                   |   13 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ApiRequest.R                         |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/BuildInnerBreakdownsRecursively.R    |    4 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetCalculatedMetrics.R               |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetFeed.R                            |only
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetFeeds.R                           |only
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetPermanentTraffic.R                |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetScheduledSpike.R                  |    4 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetTimeZone.R                        |    4 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/GetUniqueVisitorVariable.R           |    4 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/JsonQueueRealTimeReport.R            |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ParseFallout.R                       |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ParseOvertime.R                      |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ParsePathing.R                       |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ParseRanked.R                        |   11 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/ParseTrended.R                       |   11 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/QueueOvertime.R                      |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/RSiteCatalyst.R                      |    4 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/SCAuth.R                             |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/R/buildHeader.R                        |    2 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ApiRequest.Rd                      |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/BuildClassificationValueSegment.Rd |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/BuildHeader.Rd                     |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/BuildInnerBreakdownsRecursively.Rd |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/BuildLineItemSegment.Rd            |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/BuildRealTimeReportStructure.Rd    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/CancelReport.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetActivation.Rd                   |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetAxleStartDate.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetBaseCurrency.Rd                 |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetBaseURL.Rd                      |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetBookmarks.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetCalculatedMetrics.Rd            |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetClassifications.Rd              |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetCustomCalendar.Rd               |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetDashboards.Rd                   |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetDataWarehouseDisplay.Rd         |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetDefaultPage.Rd                  |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetDiscoverEnabled.Rd              |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetEcommerce.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetElements.Rd                     |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetEndpoint.Rd                     |    9 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetEvars.Rd                        |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetFeed.Rd                         |only
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetFeeds.Rd                        |only
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetGeoSegmentation.Rd              |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetGroups.Rd                       |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetIPAddressExclusions.Rd          |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetIPObfuscation.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetInternalURLFilters.Rd           |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetKeyVisitors.Rd                  |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetListVariables.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetLocalization.Rd                 |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetLogin.Rd                        |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetLogins.Rd                       |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetMarketingChannelExpiration.Rd   |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetMarketingChannelRules.Rd        |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetMarketingChannels.Rd            |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetMetrics.Rd                      |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetMobileAppReporting.Rd           |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetPaidSearchDetection.Rd          |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetPermanentTraffic.Rd             |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetProps.Rd                        |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetQueue.Rd                        |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetRealTimeReport.Rd               |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetRealTimeSettings.Rd             |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetReportDescription.Rd            |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetReportSuites.Rd                 |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetScheduledSpike.Rd               |    7 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetSegments.Rd                     |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetSiteTitle.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetSuccessEvents.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetTimeZone.Rd                     |    7 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetTrackingServer.Rd               |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetTransactionEnabled.Rd           |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetUniqueVisitorVariable.Rd        |    7 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetUsageLog.Rd                     |    9 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetVersionAccess.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/GetVideoSettings.Rd                |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/JsonQueueRealTimeReport.Rd         |   12 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ParseFallout.Rd                    |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ParseOvertime.Rd                   |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ParsePathing.Rd                    |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ParseRanked.Rd                     |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ParseTrended.Rd                    |   14 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/QueueFallout.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/QueueOvertime.Rd                   |    5 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/QueuePathing.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/QueueRanked.Rd                     |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/QueueTrended.Rd                    |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/RSiteCatalyst.Rd                   |    7 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/SCAuth.Rd                          |    7 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/SaveRealTimeSettings.Rd            |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/SubmitJsonQueueReport.Rd           |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/man/ValidateReport.Rd                  |    3 
 RSiteCatalyst-1.4.3/RSiteCatalyst/tests                                  |only
 100 files changed, 444 insertions(+), 291 deletions(-)

More information about RSiteCatalyst at CRAN
Permanent link

Package msm updated to version 1.5 with previous version 1.4 dated 2014-07-08

Title: Multi-state Markov and Hidden Markov Models in Continuous Time
Description: Continuous-time Markov and hidden Markov multi-state models for longitudinal data. Designed for processes observed at arbitrary times in continuous time (panel data) but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.
Author: Christopher Jackson
Maintainer: Christopher Jackson

Diff between msm versions 1.4 dated 2014-07-08 and 1.5 dated 2015-01-06

 ChangeLog                         |  107 +++
 DESCRIPTION                       |   31 -
 MD5                               |   79 +-
 NAMESPACE                         |    8 
 R/boot.R                          |   64 +-
 R/draic.R                         |   50 +
 R/hmm.R                           |   18 
 R/msm.R                           |  146 +++--
 R/optim.R                         |   32 -
 R/outputs.R                       | 1096 +++++++++++++++++++-------------------
 R/phase.R                         |only
 R/utils.R                         |    8 
 TODO                              |   61 --
 data/bos3.rda                     |only
 data/bos4.rda                     |only
 data/msmdata.rda                  |binary
 inst/NEWS                         |   54 +
 inst/NEWS.mine                    |only
 inst/NEWS.r57                     |only
 inst/NEWS.r64                     |only
 inst/doc/msm-manual.R             |   26 
 man/2phase.Rd                     |only
 man/bos.Rd                        |    6 
 man/cav.Rd                        |   16 
 man/draic.msm.Rd                  |    6 
 man/efpt.msm.Rd                   |    4 
 man/logLik.msm.Rd                 |    5 
 man/lrtest.msm.Rd                 |    4 
 man/msm.Rd                        |  107 +++
 man/msm2Surv.Rd                   |   13 
 man/paramdata.object.Rd           |    3 
 man/phasemeans.msm.Rd             |only
 man/plot.survfit.msm.Rd           |   13 
 man/pmatrix.msm.Rd                |    9 
 man/pmatrix.piecewise.msm.Rd      |   10 
 man/ppass.msm.Rd                  |    2 
 man/statetable.msm.Rd             |   12 
 man/viterbi.msm.Rd                |   14 
 src/analyticp.c                   |    2 
 src/doc/figures/fev_viterbi.pdf   |only
 src/doc/msm-manual.Rnw            |   25 
 src/lik.c                         |  124 +++-
 src/pijt.c                        |    5 
 tests/testthat/test_models.r      |   30 -
 tests/testthat/test_models_misc.r |    1 
 45 files changed, 1342 insertions(+), 849 deletions(-)

More information about msm at CRAN
Permanent link

Package catR updated to version 3.4 with previous version 3.3 dated 2014-11-26

Title: Procedures to Generate Patterns under Computerized Adaptive Testing
Description: Generation of response patterns under dichotomous and polytomous computerized adaptive testing (CAT) framework.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis

Diff between catR versions 3.3 dated 2014-11-26 and 3.4 dated 2015-01-06

 DESCRIPTION                |   10 -
 MD5                        |   20 +-
 NEWS                       |   47 +++++
 R/genPattern.R             |   29 +--
 R/genPolyMatrix.R          |   36 ++--
 R/randomCAT.R              |   63 ++++---
 R/simulateRespondents.R    |  396 +++++++++++++++++++++++----------------------
 man/genPattern.Rd          |    7 
 man/genPolyMatrix.Rd       |   12 -
 man/randomCAT.Rd           |   28 +--
 man/simulateRespondents.Rd |   24 +-
 11 files changed, 381 insertions(+), 291 deletions(-)

More information about catR at CRAN
Permanent link

Package sirt updated to version 1.3 with previous version 1.2 dated 2014-12-12

Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing functions in R, including multidimensional compensatory and noncompensatory IRT models, MCMC for hierarchical IRT models and testlet models, NOHARM, faceted and hierarchical rater models, ordinal IRT model (ISOP), discrete grade of membership model, latent regression models, DETECT statistic.
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch

Diff between sirt versions 1.2 dated 2014-12-12 and 1.3 dated 2015-01-06

 DESCRIPTION                          |   29 +++--
 MD5                                  |   87 +++++++++-------
 NAMESPACE                            |  144 ++++++++++++++++++++-------
 R/ARb_utils.R                        |   11 +-
 R/IRT.factor.scores.sirt.R           |only
 R/IRT.irfprob.sirt.R                 |only
 R/IRT.likelihood_sirt.R              |only
 R/IRT.mle.R                          |only
 R/IRT.modelfit.sirt.R                |only
 R/IRT.posterior_sirt.R               |only
 R/anova_sirt.R                       |only
 R/gom.em.R                           |    5 
 R/logLik_sirt.R                      |only
 R/mirt.IRT.functions.R               |    3 
 R/mle.reliability.R                  |only
 R/modelfit.cor.R                     |   17 +++
 R/modelfit.cor.poly.R                |only
 R/rasch.conquest.R                   |   75 ++++++++++----
 R/rasch.copula2.R                    |    3 
 R/rasch.copula3.R                    |    3 
 R/rasch.copula3.covariance.R         |    2 
 R/rasch.mirtlc.R                     |   17 +++
 R/rasch.mml2.R                       |   18 ++-
 R/rm.facets.IC.R                     |only
 R/rm.facets.R                        |   92 +++++++++++------
 R/rm.facets_IC.R                     |only
 R/rm.facets_PP.R                     |only
 R/rm.facets_alg.R                    |   78 +++++++++++---
 R/rm.sdt.R                           |   22 +++-
 R/rm.smooth.distribution.R           |only
 R/rm_proc.R                          |    2 
 R/smirt.R                            |    2 
 R/summary.rm.facets.R                |   10 +
 inst/NEWS                            |   35 ++++++
 man/IRT.mle.Rd                       |only
 man/R2conquest.Rd                    |    6 -
 man/data.eid.Rd                      |    9 -
 man/data.g308.Rd                     |   23 ++--
 man/f1d.irt.Rd                       |    7 -
 man/gom.em.Rd                        |   30 +++++
 man/mirt.wrapper.Rd                  |   19 +--
 man/modelfit.sirt.Rd                 |   20 +++
 man/pcm.fit.Rd                       |   24 +++-
 man/person.parameter.rasch.copula.Rd |    3 
 man/personfit.stat.Rd                |    2 
 man/rasch.copula.Rd                  |   30 +++++
 man/rasch.mirtlc.Rd                  |   56 ++++++++--
 man/rasch.mml.Rd                     |   39 +++++++
 man/rm.facets.Rd                     |  117 +++++++++++++++++++---
 man/rm.sdt.Rd                        |   35 ++++++
 man/sirt-package.Rd                  |  186 +++++++++++++++++++----------------
 man/smirt.Rd                         |   22 ++++
 52 files changed, 959 insertions(+), 324 deletions(-)

More information about sirt at CRAN
Permanent link

Package cobs updated to version 1.3-0 with previous version 1.2-2 dated 2011-04-26

Title: COBS -- COnstrained B-Splines (Sparse matrix based)
Description: Qualitatively Constrained (Regression) Smoothing Splines via Linear Programming and Sparse Matrices.
Author: Pin T. Ng and Martin Maechler
Maintainer: Martin Maechler

Diff between cobs versions 1.2-2 dated 2011-04-26 and 1.3-0 dated 2015-01-06

 cobs-1.2-2/cobs/Notes-MM                     |only
 cobs-1.2-2/cobs/Pin-notes_2009-02.txt        |only
 cobs-1.2-2/cobs/R_README                     |only
 cobs-1.2-2/cobs/data/DublinWind.tab.gz       |only
 cobs-1.2-2/cobs/data/USArmyRoofs.tab.gz      |only
 cobs-1.2-2/cobs/data/exHe.tab.gz             |only
 cobs-1.2-2/cobs/data/globtemp.rda            |only
 cobs-1.2-2/cobs/no-NAMESPACE.R               |only
 cobs-1.2-2/cobs/scobs_02_09.txt              |only
 cobs-1.2-2/cobs/tests/ex1.Rout.save          |only
 cobs-1.2-2/cobs/tests/ex2-long.Rout.save     |only
 cobs-1.2-2/cobs/tests/pt-ex.R                |only
 cobs-1.2-2/cobs/tests/wind.Rout.save         |only
 cobs-1.3-0/cobs/ChangeLog                    |   10 ++++++
 cobs-1.3-0/cobs/DESCRIPTION                  |   22 ++++++++------
 cobs-1.3-0/cobs/MD5                          |only
 cobs-1.3-0/cobs/NAMESPACE                    |    5 ++-
 cobs-1.3-0/cobs/R/concaveRegr.R              |    2 -
 cobs-1.3-0/cobs/R/scobs.R                    |   12 +++----
 cobs-1.3-0/cobs/README                       |   42 +++++++++++++++++++++++++++
 cobs-1.3-0/cobs/TODO                         |   22 +++++++++++---
 cobs-1.3-0/cobs/data/DublinWind.tab          |only
 cobs-1.3-0/cobs/data/USArmyRoofs.tab         |only
 cobs-1.3-0/cobs/data/exHe.tab                |only
 cobs-1.3-0/cobs/data/globtemp.R              |only
 cobs-1.3-0/cobs/inst/CITATION                |only
 cobs-1.3-0/cobs/man/plot.cobs.Rd             |    2 -
 cobs-1.3-0/cobs/src/Makevars                 |    5 ---
 cobs-1.3-0/cobs/tests/0_pt-ex.R              |only
 cobs-1.3-0/cobs/tests/README                 |   11 +++++--
 cobs-1.3-0/cobs/tests/ex1.Rout-N-save        |only
 cobs-1.3-0/cobs/tests/ex1Old.Rout-N-save     |only
 cobs-1.3-0/cobs/tests/ex2-long.Rout-N-save   |only
 cobs-1.3-0/cobs/tests/multi-constr.Rout.save |   12 +++++--
 cobs-1.3-0/cobs/tests/roof.Rout-N-save       |only
 cobs-1.3-0/cobs/tests/temp.Rout-N-save       |only
 cobs-1.3-0/cobs/tests/wind.Rout-N-save       |only
 37 files changed, 111 insertions(+), 34 deletions(-)

More information about cobs at CRAN
Permanent link

Package classInt updated to version 0.1-22 with previous version 0.1-21 dated 2013-09-01

Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for mapping or other graphics purposes
Author: Roger Bivand [aut, cre], Hisaji Ono [ctb], Richard Dunlap [ctb], Matthieu Stigler [ctb]
Maintainer: Roger Bivand

Diff between classInt versions 0.1-21 dated 2013-09-01 and 0.1-22 dated 2015-01-06

 ChangeLog             |   17 +++++++++++++++++
 DESCRIPTION           |   15 +++++++++------
 MD5                   |    8 ++++----
 inst/ChangeLog        |   17 +++++++++++++++++
 man/classIntervals.Rd |    8 +++++---
 5 files changed, 52 insertions(+), 13 deletions(-)

More information about classInt at CRAN
Permanent link

Package surveillance updated to version 1.8-3 with previous version 1.8-2 dated 2014-12-20

Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Description: A package implementing statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g. discrete-space setups such as the spatially enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models for surveillance data, or continuous-space point process data such as the occurrence of disease or earthquakes. Main focus is on outbreak detection in count data time series originating from public health surveillance of infectious diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences. Currently the package contains implementations of typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Hoehle and Paul (2008). Furthermore, inference methods for the retrospective infectious disease model in Held et al (2005), Held et al (2006), Paul et al (2008) and Paul and Held (2011) are provided. A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ("twinSIR", discrete space) and Meyer et al (2012) ("twinstim", continuous space). The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion. Note: Using the 'boda' algorithm requires the the INLA package, which should be installed automatically through the specified Additional_repositories, if uninstalled dependencies are also requested. As this might not work under Mac OS X it might be necessary to manually install the INLA package as specified at http://www.r-inla.org/download.
Author: Michael Höhle [aut, cre, ths], Sebastian Meyer [aut], Michaela Paul [aut], Leonhard Held [ctb, ths], Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb], Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabanés Bové [ctb], Maëlle Salmon [ctb], Dirk Schumacher [ctb], Stefan Steiner [ctb], Mikko Virtanen [ctb], Valentin Wimmer [ctb], R Core Team [ctb] (A few code segments are modified versions of code from base R)
Maintainer: Michael Höhle

Diff between surveillance versions 1.8-2 dated 2014-12-20 and 1.8-3 dated 2015-01-06

 DESCRIPTION                      |   19 ++++---
 MD5                              |   38 +++++++--------
 R/boda.R                         |    2 
 R/isoWeekYear.R                  |   72 +++++++++++++++-------------
 R/linelist2sts.R                 |   35 +++++++-------
 R/spatial_tools.R                |   16 ++++--
 R/sts_animate.R                  |   28 ++++++++---
 build/partial.rdb                |binary
 inst/NEWS.Rd                     |    6 ++
 inst/doc/glrnb.pdf               |binary
 inst/doc/hhh4.pdf                |binary
 inst/doc/surveillance.pdf        |binary
 man/algo.twins.Rd                |   11 ++++
 man/hepatitisA.Rd                |    2 
 man/isoWeekYear.Rd               |    5 +-
 man/linelist2sts.Rd              |   97 +++++++++++++++++++++++----------------
 man/nowcast.Rd                   |   31 ++++++++----
 man/sim.pointSource.Rd           |    8 +--
 man/sts_animate.Rd               |   14 ++++-
 tests/testthat/test-formatDate.R |    7 ++
 20 files changed, 244 insertions(+), 147 deletions(-)

More information about surveillance at CRAN
Permanent link

Package survMisc updated to version 0.4.4 with previous version 0.4.2 dated 2014-05-13

Title: Miscellaneous Functions for Survival Data
Description: A collection of functions for analysis of survival data. These extend the methods available in the survival package.
Author: Chris Dardis
Maintainer: Chris Dardis

Diff between survMisc versions 0.4.2 dated 2014-05-13 and 0.4.4 dated 2015-01-06

 survMisc-0.4.2/survMisc/R/autoplot.R                 |only
 survMisc-0.4.2/survMisc/R/calcSurv.R                 |only
 survMisc-0.4.2/survMisc/R/dxPlot.R                   |only
 survMisc-0.4.2/survMisc/R/multiPlot.R                |only
 survMisc-0.4.2/survMisc/R/survEst.R                  |only
 survMisc-0.4.2/survMisc/man/autoplot.rpart.Rd        |only
 survMisc-0.4.2/survMisc/man/autoplot.survfit.Rd      |only
 survMisc-0.4.2/survMisc/man/autoplot.tableAndPlot.Rd |only
 survMisc-0.4.2/survMisc/man/calcSurv.Rd              |only
 survMisc-0.4.2/survMisc/man/dxPlot.Rd                |only
 survMisc-0.4.2/survMisc/man/mean.Surv.Rd             |only
 survMisc-0.4.2/survMisc/man/survEst.Rd               |only
 survMisc-0.4.4/survMisc/DESCRIPTION                  |   38 
 survMisc-0.4.4/survMisc/MD5                          |  160 +-
 survMisc-0.4.4/survMisc/NAMESPACE                    |  134 +-
 survMisc-0.4.4/survMisc/R/air.R                      |   47 
 survMisc-0.4.4/survMisc/R/asSurv.R                   |only
 survMisc-0.4.4/survMisc/R/autoplotRpart.R            |  807 +++++++-------
 survMisc-0.4.4/survMisc/R/autoplotSurvfit.R          |only
 survMisc-0.4.4/survMisc/R/autoplotTAP.R              |   47 
 survMisc-0.4.4/survMisc/R/btumors.R                  |   53 
 survMisc-0.4.4/survMisc/R/ci.R                       |only
 survMisc-0.4.4/survMisc/R/comp.R                     | 1068 +++++++++----------
 survMisc-0.4.4/survMisc/R/covMatSurv.R               |  143 +-
 survMisc-0.4.4/survMisc/R/cutp.R                     |  120 +-
 survMisc-0.4.4/survMisc/R/d1.R                       |only
 survMisc-0.4.4/survMisc/R/dx.R                       |only
 survMisc-0.4.4/survMisc/R/gamTerms.R                 |  104 +
 survMisc-0.4.4/survMisc/R/gastric.R                  |   52 
 survMisc-0.4.4/survMisc/R/genSurv.R                  |   23 
 survMisc-0.4.4/survMisc/R/gof.R                      |only
 survMisc-0.4.4/survMisc/R/ic.R                       |  186 +--
 survMisc-0.4.4/survMisc/R/local.R                    |  788 +++++++-------
 survMisc-0.4.4/survMisc/R/lrSS.R                     |  208 ++-
 survMisc-0.4.4/survMisc/R/meanSurv.R                 |  198 +--
 survMisc-0.4.4/survMisc/R/mpip.R                     |only
 survMisc-0.4.4/survMisc/R/multiCoxph.R               |  882 +++++++--------
 survMisc-0.4.4/survMisc/R/plotMultiCoxph.R           |  148 +-
 survMisc-0.4.4/survMisc/R/plotSurv.R                 |  236 ++--
 survMisc-0.4.4/survMisc/R/plotTerm.R                 |only
 survMisc-0.4.4/survMisc/R/profLik.R                  |  238 ++--
 survMisc-0.4.4/survMisc/R/quantile.R                 |  477 ++++----
 survMisc-0.4.4/survMisc/R/rsq.R                      |only
 survMisc-0.4.4/survMisc/R/sf.R                       |only
 survMisc-0.4.4/survMisc/R/sig.R                      |  112 -
 survMisc-0.4.4/survMisc/R/survMisc_package.R         |   74 -
 survMisc-0.4.4/survMisc/R/tableRhs.R                 |   85 +
 survMisc-0.4.4/survMisc/R/tne.R                      |  707 ++++++------
 survMisc-0.4.4/survMisc/R/tneBMT.R                   |   70 -
 survMisc-0.4.4/survMisc/R/tneKidney.R                |   38 
 survMisc-0.4.4/survMisc/R/whas100.R                  |   69 -
 survMisc-0.4.4/survMisc/R/whas500.R                  |only
 survMisc-0.4.4/survMisc/data/air.rda                 |binary
 survMisc-0.4.4/survMisc/data/btumors.rda             |binary
 survMisc-0.4.4/survMisc/data/gastric.rda             |binary
 survMisc-0.4.4/survMisc/data/mpip.rda                |only
 survMisc-0.4.4/survMisc/data/tneBMT.rda              |binary
 survMisc-0.4.4/survMisc/data/tneKidney.rda           |binary
 survMisc-0.4.4/survMisc/data/whas100.rda             |binary
 survMisc-0.4.4/survMisc/data/whas500.rda             |only
 survMisc-0.4.4/survMisc/inst                         |only
 survMisc-0.4.4/survMisc/man/air.Rd                   |   63 -
 survMisc-0.4.4/survMisc/man/asSurv.Rd                |only
 survMisc-0.4.4/survMisc/man/autoplotRpart.Rd         |only
 survMisc-0.4.4/survMisc/man/autoplotSurvfit.Rd       |only
 survMisc-0.4.4/survMisc/man/autoplotTableAndPlot.Rd  |only
 survMisc-0.4.4/survMisc/man/btumors.Rd               |   68 -
 survMisc-0.4.4/survMisc/man/ci.Rd                    |only
 survMisc-0.4.4/survMisc/man/comp.Rd                  |  432 +++----
 survMisc-0.4.4/survMisc/man/covMatSurv.Rd            |  114 +-
 survMisc-0.4.4/survMisc/man/cutp.Rd                  |  172 +--
 survMisc-0.4.4/survMisc/man/d1.Rd                    |only
 survMisc-0.4.4/survMisc/man/dx.Rd                    |only
 survMisc-0.4.4/survMisc/man/gamTerms.Rd              |  138 +-
 survMisc-0.4.4/survMisc/man/gastric.Rd               |   82 -
 survMisc-0.4.4/survMisc/man/genSurv.Rd               |  186 +--
 survMisc-0.4.4/survMisc/man/gof.Rd                   |only
 survMisc-0.4.4/survMisc/man/ic.Rd                    |  138 +-
 survMisc-0.4.4/survMisc/man/local.Rd                 |  249 ++--
 survMisc-0.4.4/survMisc/man/lrSS.Rd                  |  190 +--
 survMisc-0.4.4/survMisc/man/meanSurv.Rd              |only
 survMisc-0.4.4/survMisc/man/mpip.Rd                  |only
 survMisc-0.4.4/survMisc/man/multi.Rd                 |  335 ++---
 survMisc-0.4.4/survMisc/man/plot.Surv.Rd             |   85 -
 survMisc-0.4.4/survMisc/man/plotMultiCoxph.Rd        |   99 -
 survMisc-0.4.4/survMisc/man/plotTerm.Rd              |only
 survMisc-0.4.4/survMisc/man/profLik.Rd               |  117 --
 survMisc-0.4.4/survMisc/man/quantile.Rd              |  266 ++--
 survMisc-0.4.4/survMisc/man/rsq.Rd                   |only
 survMisc-0.4.4/survMisc/man/sf.Rd                    |only
 survMisc-0.4.4/survMisc/man/sig.Rd                   |   90 -
 survMisc-0.4.4/survMisc/man/survMisc-package.Rd      |   68 -
 survMisc-0.4.4/survMisc/man/tableRhs.Rd              |  161 +-
 survMisc-0.4.4/survMisc/man/tne.Rd                   |  246 ++--
 survMisc-0.4.4/survMisc/man/tneBMT.Rd                |   93 -
 survMisc-0.4.4/survMisc/man/tneKidney.Rd             |   44 
 survMisc-0.4.4/survMisc/man/whas100.Rd               |   86 -
 survMisc-0.4.4/survMisc/man/whas500.Rd               |only
 survMisc-0.4.4/survMisc/src                          |only
 99 files changed, 5666 insertions(+), 5168 deletions(-)

More information about survMisc at CRAN
Permanent link

Package Rdsdp updated to version 1.0.2 with previous version 1.0.1 dated 2015-01-01

Title: R Interface to DSDP Semidefinite Programming Library
Description: R interface to DSDP semidefinite programming library. Installs version 5.8 of DSDP from DSDP website. An existing installation of DSDP may be used by passing the proper configure arguments to the installation command.
Author: Zhisu Zhu, Yinyu Ye (DSDP by Steve Benson, Yinyu Ye and Xiong Zhang)
Maintainer: Zhisu Zhu

Diff between Rdsdp versions 1.0.1 dated 2015-01-01 and 1.0.2 dated 2015-01-06

 DESCRIPTION                  |    8 ++---
 MD5                          |   12 ++++----
 man/dsdp.Rd                  |    1 
 src/Rdsdp.c                  |   19 +++++--------
 src/Rreadsdpa.c              |   60 ++++++++++++++++++++-----------------------
 src/dsdp/src/vecmat/dufull.c |   20 +++++++-------
 tests/test2.R                |    2 -
 7 files changed, 56 insertions(+), 66 deletions(-)

More information about Rdsdp at CRAN
Permanent link

Package RcppCNPy updated to version 0.2.4 with previous version 0.2.3 dated 2014-04-10

Title: Read-Write Support for NumPy Files via Rcpp
Description: The cnpy library written by Carl Rogers provides read and write facilities for files created with (or for) the NumPy extension for Python. Vectors and matrices of numeric types can be read or written to and from files as well as compressed files. Support for integer files is available if the package has been built with -std=c++11 which is the default starting with release 0.2.3 following the release of R 3.1.0.
Author: Dirk Eddelbuettel and Wush Wu
Maintainer: Dirk Eddelbuettel

Diff between RcppCNPy versions 0.2.3 dated 2014-04-10 and 0.2.4 dated 2015-01-06

 ChangeLog                    |   78 +++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                  |   24 ++++++-------
 MD5                          |   30 ++++++++--------
 build/vignette.rds           |binary
 inst/NEWS.Rd                 |   14 +++++++
 inst/doc/RcppCNPy-intro.R    |   17 ++-------
 inst/doc/RcppCNPy-intro.Rnw  |    9 +---
 inst/doc/RcppCNPy-intro.pdf  |binary
 src/cnpy.cpp                 |    8 ----
 src/cnpy.h                   |   24 +++++++++++--
 src/cnpyMod.cpp              |   78 ++++++++++++++++++++++++++++++-------------
 tests/loadFiles.R            |   23 +++++-------
 tests/loadFiles.Rout.save    |   36 +++++++++----------
 tests/saveAndLoad.R          |   40 +++++++++++++++++++++-
 tests/saveAndLoad.Rout.save  |   54 +++++++++++++++++++++++++++--
 vignettes/RcppCNPy-intro.Rnw |    9 +---
 16 files changed, 322 insertions(+), 122 deletions(-)

More information about RcppCNPy at CRAN
Permanent link

Package randomUniformForest updated to version 1.1.2 with previous version 1.1.1 dated 2014-12-03

Title: Random Uniform Forests for Classification, Regression and Unsupervised Learning
Description: Ensemble model, for classification, regression and unsupervised learning, based on a forest of unpruned and randomized binary decision trees. Each tree is grown by sampling, with replacement, a set of variables at each node. Each cut-point is generated randomly, according to the continuous Uniform distribution. For each tree, data are either bootstrapped or subsampled. The unsupervised mode introduces clustering, dimension reduction and variable importance, using a three-layer engine. Random Uniform Forests are mainly aimed to lower correlation between trees (or trees residuals), to provide a deep analysis of variable importance and to allow native distributed and incremental learning.
Author: Saip Ciss
Maintainer: Saip Ciss

Diff between randomUniformForest versions 1.1.1 dated 2014-12-03 and 1.1.2 dated 2015-01-06

 DESCRIPTION                                                 |    8 
 MD5                                                         |   45 
 NAMESPACE                                                   |    6 
 NEWS                                                        |   62 -
 R/DecisionTreesCPP.R                                        |  252 +++-
 R/OnliningRandomUniformForests.R                            |  107 +
 R/RandomUniformForestsCPP.R                                 |  712 +++++++++---
 R/genericFunctions.R                                        |  158 +-
 build/vignette.rds                                          |binary
 inst/doc/VariableImportanceInRandomUniformForests.pdf       |only
 inst/doc/VariableImportanceInRandomUniformForests.pdf.asis  |only
 inst/doc/randomUniformForestsOverview.pdf                   |binary
 man/clusteringObservations.Rd                               |   30 
 man/combine.unsupervised.Rd                                 |only
 man/generic.cv.Rd                                           |   49 
 man/internalFunctions.Rd                                    |    4 
 man/model.stats.Rd                                          |   68 +
 man/partialDependenceBetweenPredictors.Rd                   |    6 
 man/partialDependenceOverResponses.Rd                       |    6 
 man/predict.randomUniformForest.Rd                          |    6 
 man/rUniformForest.big.Rd                                   |    8 
 man/randomUniformForest-package.Rd                          |   16 
 man/randomUniformForest.Rd                                  |   82 -
 man/unsupervised.randomUniformForest.Rd                     |   42 
 man/update.unsupervised.Rd                                  |only
 vignettes/VariableImportanceInRandomUniformForests.pdf.asis |only
 26 files changed, 1229 insertions(+), 438 deletions(-)

More information about randomUniformForest at CRAN
Permanent link

New package medicalrisk with initial version 1.1
Package: medicalrisk
Type: Package
Title: Medical Risk and Comorbidity Tools for ICD-9-CM Data
Version: 1.1
Date: 2015-01-04
Authors@R: c(person("Patrick", "McCormick", role = c("aut", "cre"), email = "patrick.mccormick@alum.mit.edu"), person("Thomas", "Joseph", role = "aut", email = "thomas.joseph@mountsinai.org"))
Description: Generates risk estimates and comorbidity flags from ICD-9-CM codes available in administrative medical datasets. The package supports the Charlson Comorbidity Index, the Elixhauser Comorbidity classification, the Revised Cardiac Risk Index, and the Risk Stratification Index. Methods are table-based, fast, and use the plyr package, so parallelization is possible for large jobs. Also includes a sample of real ICD-9 data for 100 patients from a publicly available dataset.
Depends: R (>= 2.11.0)
Imports: plyr (>= 1.5), reshape2, hash
Suggests: testthat, knitr
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Packaged: 2015-01-06 02:54:46 UTC; patrick
Author: Patrick McCormick [aut, cre], Thomas Joseph [aut]
Maintainer: Patrick McCormick
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 05:43:42

More information about medicalrisk at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.