Title: True Random Numbers using random.org
Description: The true random number service provided by the random.org
website created by Mads Haahr samples atmospheric noise via radio
tuned to an unused broadcasting frequency together with a skew
correction algorithm due to John von Neumann. More background is available
in the included vignette based on an essay by Mads Haahr. In its current
form, the package offers functions to retrieve random integers, randomized
sequences and random strings.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Diff between random versions 0.2.2 dated 2013-12-11 and 0.2.3 dated 2015-01-08
ChangeLog | 17 ++++++++++++++ DESCRIPTION | 28 +++++++++++------------ MD5 | 15 ++++++------ NAMESPACE | 2 + R/random.R | 54 +++++++++++++++++++++++++++++++--------------- README.md |only build/vignette.rds |binary inst/doc/random-essay.pdf |binary inst/doc/random-intro.pdf |binary 9 files changed, 78 insertions(+), 38 deletions(-)
Title: Functions to support the Multicriteria Decision Aiding process
Description: MCDA, which stands for Multicriteria Decision Aiding, implements functions which can be useful to support the analyst in the decision aiding process involving multiple, conflicting criteria. These functions include, but are not limited to, data pre-processing tools, preference elicitation procedures, aggregation functions, as well as post-processing techniques and data visualisation functions.
Author: Patrick Meyer, Sébastien Bigaret.
Maintainer: Patrick Meyer
Diff between MCDA versions 0.0.7 dated 2014-12-09 and 0.0.8 dated 2015-01-08
DESCRIPTION | 10 +++++----- MD5 | 7 +++++-- NAMESPACE | 1 + R/normalizePerformanceTable.R |only man/normalizePerformanceTable.Rd |only tests/normalizePerformanceTable.R |only 6 files changed, 11 insertions(+), 7 deletions(-)
Title: Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Description: Provides a function for calculating the Model-Averaged Tail Area
Wald (MATA-Wald) confidence interval, which is generated from single-model
estimators and AIC model weights
Author: Daniel Turek [aut, cre]
Maintainer: Daniel Turek
Diff between MATA versions 0.1 dated 2014-11-22 and 0.2 dated 2015-01-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/MATA_package_source.R | 7 ++++--- man/mata.wald.Rd | 7 ++++--- 4 files changed, 15 insertions(+), 13 deletions(-)
Title: Circular Visualization in R
Description: This package implements circular visualization
(http://circos.ca/) in R. Due to the natural born feature of R to draw statistical
graphics, this package can provide a more general and flexible way to
visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu
Diff between circlize versions 0.2.0 dated 2014-12-08 and 0.2.1 dated 2015-01-08
DESCRIPTION | 8 MD5 | 80 ++++---- NEWS | 19 + R/chordDiagram.R | 12 + R/genomic.R | 49 +++- R/global.R | 19 + R/plot.R | 61 ++++-- R/utils.R | 13 + R/zzz.R | 16 - inst/doc/circlize.R | 8 inst/doc/circlize.Rnw | 15 - inst/doc/circlize.pdf |binary inst/doc/circular_phylogenetic_tree.R | 6 inst/doc/circular_phylogenetic_tree.Rnw | 5 inst/doc/circular_phylogenetic_tree.pdf |binary inst/doc/circular_visualization_of_matrix.R | 6 inst/doc/circular_visualization_of_matrix.Rnw | 4 inst/doc/circular_visualization_of_matrix.pdf |binary inst/doc/draw_ideogram.R | 2 inst/doc/draw_ideogram.Rnw | 2 inst/doc/draw_ideogram.pdf |binary inst/doc/genomic_plot.R | 176 +++++++++++++++++ inst/doc/genomic_plot.Rnw | 147 ++++++++++++++ inst/doc/genomic_plot.pdf |binary inst/doc/interesting_graphics.R | 5 inst/doc/interesting_graphics.Rnw | 5 inst/doc/interesting_graphics.pdf |binary man/circos.genomicText.rd | 2 man/circos.text.rd | 8 man/circos.trackText.rd | 4 man/draw.sector.rd | 66 +++--- man/posTransform.text.rd | 248 ++++++++++++------------- vignettes/circlize.Rnw | 15 - vignettes/circular_phylogenetic_tree.Rnw | 5 vignettes/circular_visualization_of_matrix.Rnw | 4 vignettes/draw_ideogram.Rnw | 2 vignettes/genomic_plot.Rnw | 147 ++++++++++++++ vignettes/interesting_graphics.Rnw | 5 vignettes/src/intro-07-direction.R | 8 vignettes/src/intro-09-text-niceFacing.R | 59 +++++ vignettes/src/intro-09-text.R | 7 41 files changed, 913 insertions(+), 325 deletions(-)
Title: Model Selection and Multimodel Inference Based on (Q)AIC(c)
Description: This package includes functions to create model selection tables based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc). The package also features functions to conduct classic model averaging (multimodel inference) for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates. Other handy functions enable the computation of relative variable importance, evidence ratios, and confidence sets for the best model. The present version works with Cox proportional hazards models and conditional logistic regression ('coxph' and 'coxme' classes), linear models ('lm' class), generalized linear models ('glm', 'vglm', 'hurdle', and 'zeroinfl' classes), linear models fit by generalized least squares ('gls' class), linear mixed models ('lme' class), generalized linear mixed models ('mer' and 'merMod' classes), multinomial and ordinal logistic regressions ('multinom'}, 'polr', 'clm', and 'clmm' classes), robust regression models ('rlm' class), beta regression models ('betareg' class), parametric survival models ('survreg' class), nonlinear models ('nls' and 'gnls' classes), and nonlinear mixed models ('nlme' and 'nlmer' classes). The package also supports various models of 'unmarkedFit' and 'maxLikeFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs' and 'rjags' classes. Objects following model selection and multimodel inference can be formatted to LaTeX using 'xtable' methods included in the package.
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
Diff between AICcmodavg versions 2.0-1 dated 2014-10-17 and 2.0-2 dated 2015-01-08
DESCRIPTION | 12 MD5 | 36 +- NAMESPACE | 70 ++++- R/Nmix.gof.test.R | 430 ++++++++++++++++++++++++++++++- R/aictab.R | 186 +++++++++++-- R/boot.wt.r | 123 ++++++++- R/c_hat.R | 103 ++++--- R/evidence.R | 5 R/mb.gof.test.R | 627 ++++++++++++++++++++++++++++++++++++++++++++-- R/xtable.r |only inst/NEWS | 20 + man/AICcmodavg-package.Rd | 10 man/Nmix.gof.test.Rd | 132 +++++---- man/aictab.Rd | 18 - man/boot.wt.Rd | 8 man/c_hat.Rd | 71 +++-- man/evidence.Rd | 7 man/mb.gof.test.Rd | 183 +++++++++---- man/modavg.Rd | 67 ++-- man/xtable.Rd |only 20 files changed, 1788 insertions(+), 320 deletions(-)
Title: Voxelwise semiparametrics
Description: Parametric and semiparametric inference for massively parallel
models, i.e., a large number of models with common design matrix, as often
occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, and Ruixin Tan
Maintainer: Philip Reiss
Diff between vows versions 0.3 dated 2014-08-29 and 0.3.1 dated 2015-01-08
DESCRIPTION | 9 +++++---- MD5 | 2 +- 2 files changed, 6 insertions(+), 5 deletions(-)
Title: Tools inspired by Stata to manipulate tabular data
Description: statar makes it easier to work with tabular datasets. The package
includes a set of functions to clean and summarize variables, to join
datasets using an SQL-syntax, to manipulate datasets with a panel structure
(elapsed dates, lead/lag, rolling functions, fill in missing values based
on previous dates, add rows for missing dates). The package also includes
functions to emulate Stata and Julia string and expression interpolation.
statar is based on the data.table package and is inspired by Stata.
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez
Diff between statar versions 0.1.2 dated 2014-10-31 and 0.1.3 dated 2015-01-08
statar-0.1.2/statar/R/duplicates.R |only statar-0.1.2/statar/R/spread.R |only statar-0.1.2/statar/man/duplicates.Rd |only statar-0.1.3/statar/DESCRIPTION | 10 statar-0.1.3/statar/MD5 | 83 +++--- statar-0.1.3/statar/NAMESPACE | 10 statar-0.1.3/statar/R/elapsed_dates.R | 70 +++++ statar-0.1.3/statar/R/find_duplicates.R |only statar-0.1.3/statar/R/spread_.R |only statar-0.1.3/statar/R/statar.R | 1 statar-0.1.3/statar/R/sum_up.R | 298 ++++++++---------------- statar-0.1.3/statar/README.md | 2 statar-0.1.3/statar/build/vignette.rds |binary statar-0.1.3/statar/inst/doc/macros.Rmd | 9 statar-0.1.3/statar/inst/doc/macros.html | 6 statar-0.1.3/statar/inst/doc/merge-records.Rmd |only statar-0.1.3/statar/inst/doc/merge-records.html |only statar-0.1.3/statar/inst/doc/panel-data.Rmd | 18 + statar-0.1.3/statar/inst/doc/panel-data.html | 17 + statar-0.1.3/statar/inst/doc/summary.Rmd | 64 +++-- statar-0.1.3/statar/inst/doc/summary.html | 64 +++-- statar-0.1.3/statar/man/bin.Rd | 3 statar-0.1.3/statar/man/demean.Rd | 3 statar-0.1.3/statar/man/elapsed.Rd | 3 statar-0.1.3/statar/man/fill_gap.Rd | 3 statar-0.1.3/statar/man/find_duplicates.Rd |only statar-0.1.3/statar/man/floor_date.Rd | 3 statar-0.1.3/statar/man/graph.Rd | 3 statar-0.1.3/statar/man/join.Rd | 3 statar-0.1.3/statar/man/lead-lag.Rd | 3 statar-0.1.3/statar/man/pastem.Rd | 3 statar-0.1.3/statar/man/roll.Rd | 3 statar-0.1.3/statar/man/sample_mode.Rd | 3 statar-0.1.3/statar/man/setdrop.Rd | 3 statar-0.1.3/statar/man/setkeep.Rd | 3 statar-0.1.3/statar/man/setmutate.Rd | 3 statar-0.1.3/statar/man/setmutate_each.Rd | 3 statar-0.1.3/statar/man/setna.Rd | 3 statar-0.1.3/statar/man/statar.Rd | 3 statar-0.1.3/statar/man/sum_up.Rd | 11 statar-0.1.3/statar/man/tag.Rd | 3 statar-0.1.3/statar/man/tempname.Rd | 3 statar-0.1.3/statar/man/winsorize.Rd | 3 statar-0.1.3/statar/vignettes/macros.Rmd | 9 statar-0.1.3/statar/vignettes/merge-records.Rmd |only statar-0.1.3/statar/vignettes/panel-data.Rmd | 18 + statar-0.1.3/statar/vignettes/summary.Rmd | 64 +++-- 47 files changed, 464 insertions(+), 350 deletions(-)
Title: brnn (Bayesian regularization for feed-forward neural networks)
Description: Bayesian regularization for feed-forward neural networks
Author: Paulino Perez Rodriguez, Daniel Gianola
Maintainer: Paulino Perez Rodriguez
Diff between brnn versions 0.4 dated 2014-12-05 and 0.5 dated 2015-01-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/brnn.R | 2 +- inst/history.txt | 2 ++ src/Makevars | 4 ++-- src/Makevars.win | 6 +++--- 6 files changed, 17 insertions(+), 15 deletions(-)
Title: Extraction of Business Financial Information from XBRL Documents
Description:
XBRL is a package suited to extract business financial information from
an Extensible Business Reporting Language (XBRL) instance file and the
associated collection of files that defines its Discoverable Taxonomy
Set (DTS). These files are usually disseminated across different remote
locations.
XBRL documents employ many technologies defined by XML standards, such
as XML Schema, Namespaces, XLink, and XPath, which make the extraction
of information involved. The functions provided by this package
address this complexity, returning data frames containing the enclosed
information readily available to perform analyses.
XBRL has been successfully tested in analyzing 10-K and 10-Q
submissions from USA filing companies that are publicly available at
the EDGAR system of the Securities and Exchange Commission (SEC).
As published taxonomy files (such as
"http://xbrl.fasb.org/us-gaap/2013/elts/us-gaap-2013-01-31.xsd")
are immutable and are used by most filers, XBRL offers the option of
downloading them only the first time they are referred, keeping a
local cache copy that can be used from then on. This speeds-up the
process, specially on slow connections.
XBRL is not and does not aim to be (at least yet) a validating XBRL
processor.
XBRL is still a work in progress. As such, functions and produced data
frames may change structure in future versions until stabilization.
Author: Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso
Diff between XBRL versions 0.99.13 dated 2014-11-18 and 0.99.14 dated 2015-01-08
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/xbrlProcessElements.cpp | 8 ++++++++ 4 files changed, 21 insertions(+), 7 deletions(-)
Title: Fitting Semi-parametric Log-symmetric Regression Models
Description: This package allows to to fit a semi-parametric regression model suitable for analysis of data sets in which the response variable is continuous, strictly positive, and asymmetric. In this setup, both median and skewness of the response variable distribution are explicitly modeled through semi-parametric functions, whose nonparametric components may be approximated by natural cubic splines or P-splines. Supported distributions for the model error include log-normal, log-Student-t, log-power-exponential, log-hyperbolic, log-contaminated-normal, log-slash, Birnbaum-Saunders and Birnbaum-Saunders-t distributions.
Author: Luis Hernando Vanegas
Maintainer: Luis Hernando Vanegas
Diff between ssym versions 1.5.1 dated 2014-10-07 and 1.5.2 dated 2015-01-08
DESCRIPTION | 14 +-- MD5 | 82 ++++++++++++----------- R/AIC.ssym.R |only R/BIC.ssym.R |only R/itpM.R | 4 - R/itpM2.R | 8 +- R/np.graph.R | 7 + R/plot.ssym.R | 2 R/ssym.l.R | 50 +++++++------- R/ssym.nl.R | 22 +++--- R/summary.ssym.R | 9 +- data/Biaxial.rda |binary data/Claims.rda |binary data/Erabbits.rda |binary data/Ovocytes.rda |binary data/Snacks.rda |binary data/gdp.rda |binary man/AIC.ssym.Rd |only man/BIC.ssym.Rd |only man/Biaxial.Rd | 3 man/Claims.Rd | 2 man/Ovocytes.Rd | 9 +- man/Snacks.Rd | 15 ++-- man/coef.ssym.Rd | 2 man/gdp.Rd | 8 +- man/influence.ssym.Rd | 9 +- man/itpE.Rd | 2 man/itpE2.Rd | 2 man/itpE3.Rd | 2 man/itpM.Rd | 2 man/itpM2.Rd | 2 man/itpM3.Rd | 2 man/lambda.hat.Rd | 19 +++-- man/logLik.ssym.Rd | 2 man/ncs.Rd | 9 +- man/np.graph.Rd | 2 man/plot.ssym.Rd | 2 man/print.ssym.Rd | 2 man/psp.Rd | 12 +-- man/rvgs.Rd | 4 - man/ssym-package.Rd | 14 ++- man/ssym.l.Rd | 167 +++++++++++++++++++++++++++++++---------------- man/ssym.nl.Rd | 176 ++++++++++++++++++++++++++------------------------ man/vcov.ssym.Rd | 2 44 files changed, 382 insertions(+), 287 deletions(-)
Title: Simulates Correlated Multinomial Responses
Description: Simulates correlated multinomial responses by utilizing threshold approaches under a cumulative link model, a continuation ratio model or a baseline-category logit marginal model specification.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
Diff between SimCorMultRes versions 1.2 dated 2014-03-02 and 1.3.0 dated 2015-01-08
SimCorMultRes-1.2/SimCorMultRes/NEWS |only SimCorMultRes-1.2/SimCorMultRes/inst/doc/Vignette.R |only SimCorMultRes-1.2/SimCorMultRes/inst/doc/Vignette.Rnw |only SimCorMultRes-1.2/SimCorMultRes/inst/doc/Vignette.pdf |only SimCorMultRes-1.2/SimCorMultRes/vignettes/Vignette.Rnw |only SimCorMultRes-1.3.0/SimCorMultRes/DESCRIPTION | 13 ++-- SimCorMultRes-1.3.0/SimCorMultRes/MD5 | 29 +++++----- SimCorMultRes-1.3.0/SimCorMultRes/R/rmult.bcl.R | 1 SimCorMultRes-1.3.0/SimCorMultRes/R/rmult.clm.R | 2 SimCorMultRes-1.3.0/SimCorMultRes/R/rmult.crm.R | 2 SimCorMultRes-1.3.0/SimCorMultRes/build/vignette.rds |binary SimCorMultRes-1.3.0/SimCorMultRes/inst/CITATION |only SimCorMultRes-1.3.0/SimCorMultRes/inst/NEWS |only SimCorMultRes-1.3.0/SimCorMultRes/inst/doc/SCMRvin.R |only SimCorMultRes-1.3.0/SimCorMultRes/inst/doc/SCMRvin.Rnw |only SimCorMultRes-1.3.0/SimCorMultRes/inst/doc/SCMRvin.pdf |only SimCorMultRes-1.3.0/SimCorMultRes/man/SimCorMultRes-package.Rd | 4 - SimCorMultRes-1.3.0/SimCorMultRes/man/rmult.bcl.Rd | 6 +- SimCorMultRes-1.3.0/SimCorMultRes/man/rmult.clm.Rd | 4 + SimCorMultRes-1.3.0/SimCorMultRes/man/rmult.crm.Rd | 2 SimCorMultRes-1.3.0/SimCorMultRes/vignettes/SCMRvin.Rnw |only 21 files changed, 36 insertions(+), 27 deletions(-)
Title: Shrinkage Covariance Matrix Estimators
Description: Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
Diff between ShrinkCovMat versions 1.0.3 dated 2014-11-02 and 1.1.0 dated 2015-01-08
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- inst/CITATION | 9 +++++---- inst/NEWS | 3 +++ man/ShrinkCovMat-package.Rd | 7 +++---- man/shrinkcovmat.equal.Rd | 2 +- man/shrinkcovmat.identity.Rd | 2 +- man/shrinkcovmat.unequal.Rd | 2 +- man/targetselection.Rd | 6 +++--- 9 files changed, 30 insertions(+), 27 deletions(-)
Title: Multivariate Constructs
Description: Includes functions designed to examine relationships among multivariate constructs (e.g., personality). This includes functions for profile (within-person) analysis, dealing with large numbers of analyses, lens model analyses, and structural summary methods for data with circumplex structure. The package also includes functions for graphically comparing and displaying group means.
Author: Ryne A. Sherman
Maintainer: Ryne A. Sherman
Diff between multicon versions 1.3 dated 2014-10-30 and 1.5 dated 2015-01-08
DESCRIPTION | 12 +-- MD5 | 26 +++++--- R/diffPlot.default.r | 155 +++++++++++++++++++++++++++--------------------- R/diffPlot.formula.r | 140 ++++++++++++++++++++++++------------------- R/lensDetect.r |only R/lensModel.r |only R/plotProfile.R |only R/print.lensMod.r |only R/scoreTest.R |only data/lensData.rdata |only man/diffPlot.Rd | 11 ++- man/lensData.rd |only man/lensDetect.rd |only man/lensModel.rd |only man/plotProfile.Rd |only man/print.lensMod.rd |only man/print.q.cor.rd | 2 man/scoreTest.Rd |only man/vector.alpha.Rd | 4 - man/vector.splithalf.Rd | 5 - 20 files changed, 204 insertions(+), 151 deletions(-)
Title: A Connection Interface to Libcurl
Description: The curl() function provides a drop-in replacement for base url()
with better performance and support for http 2.0, ssl (https://, ftps://),
gzip, deflate and other libcurl goodies. This interface is implemented
using the RConnection API in order to support incremental processing of
both binary and text streams. If you are looking for a more-user-friendly
http client, try the RCurl or httr packages instead.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Diff between curl versions 0.3 dated 2014-12-01 and 0.4 dated 2015-01-08
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 29 +++++++++++++++++++---------- NAMESPACE | 9 ++++++++- NEWS | 5 +++++ R/curl.R | 8 ++++---- R/curl_escape.R |only R/curl_version.R |only configure | 15 +++++++++------ configure.win |only man/curl.Rd | 11 ++++++----- man/curl_download.Rd | 3 ++- man/utilities.Rd |only src/Makevars.win | 3 ++- src/curl-symbols.h |only src/curl.c | 2 +- src/escape.c |only src/options.c |only src/options.h |only src/version.c |only 20 files changed, 61 insertions(+), 34 deletions(-)
Title: spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre],
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma
Diff between gstat versions 1.0-19 dated 2014-04-02 and 1.0-20 dated 2015-01-08
DESCRIPTION | 8 +-- MD5 | 91 +++++++++++++++++------------------ NAMESPACE | 2 R/hscat.R | 5 + R/krige.R | 6 +- R/krige0.R | 119 ++++++++++++++++++++++++++++++++-------------- R/variogramST.R | 42 ++++++++-------- build/vignette.rds |binary configure.in | 4 + data/coalash.rda |binary data/fulmar.rda |binary data/jura.rda |binary data/meuse.all.rda |binary data/meuse.alt.rda |binary data/ncp.grid.rda |binary data/oxford.rda |binary data/pcb.rda |binary data/sic2004.rda |binary data/sic97.rda |binary data/tull.rda |binary data/vv.rda |binary data/walker.rda |binary data/wind.rda |binary demo/00Index | 2 demo/a2p.R | 33 +----------- demo/snow.R | 14 +++-- demo/stkrige.R | 10 +-- inst/ChangeLog | 111 ++++++++++++++++++++++++++++++++++++++++++ inst/doc/gstat.R | 2 inst/doc/gstat.Rnw | 2 inst/doc/gstat.pdf |binary inst/doc/prs.pdf |binary inst/doc/st.pdf |binary man/hscat.Rd | 3 - man/jura.Rd | 98 ++++++++++++++++++++++++++++--------- man/krigeST.Rd | 6 +- man/predict.gstat.Rd | 23 +++++--- man/vgmArea.Rd |only man/wind.Rd | 10 +-- src/lex.c | 53 ++++++++++++-------- src/lex.l | 13 +++++ src/s.c | 2 tests/na.action.Rout.save | 22 ++++---- tests/unproj.Rout.save | 8 +-- tests/windst.Rout.save | 14 ++--- vignettes/gstat.Rnw | 2 vignettes/gstat.Rout.save | 2 47 files changed, 468 insertions(+), 239 deletions(-)
Title: Semiparametric Bivariate Probit Modelling
Description: Routine for fitting bivariate models for binary responses with semiparametric predictors (including linear and nonlinear effects) in the presence of correlated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra
Maintainer: Giampiero Marra
Diff between SemiParBIVProbit versions 3.2-13 dated 2014-12-18 and 3.2-13.1 dated 2015-01-08
ChangeLog | 7 - DESCRIPTION | 6 MD5 | 110 ++++++++--------- NAMESPACE | 8 - R/AT.r | 65 +++++----- R/LM.bpm.r | 14 +- R/SemiParBIVProbit.fit.R | 8 - R/SemiParBIVProbit.fit.post.r | 33 +++-- R/SemiParBIVProbit.fit1.R | 15 +- R/SemiParBIVProbit.r | 26 ++-- R/adjCov.r | 13 +- R/bprobgHs.r | 73 +++++++---- R/bprobgHsPL.r | 107 +++++++++++----- R/bprobgHsPO.r | 69 +++++++--- R/bprobgHsSS.r | 74 ++++++++--- R/mb.r | 217 ++++++++++++++++++++++++++++++++-- R/print.AT.r | 2 R/print.SemiParBIVProbit.r | 2 R/print.est.prev.r | 2 R/print.mb.r |only R/print.summary.SemiParBIVProbit.r | 2 R/sem.checks.r | 9 - R/startSS.r | 8 - R/summary.SemiParBIVProbit.r | 61 +++++++-- R/working.comp.r | 6 R/working.comp1.r | 4 R/working.comp3.r | 6 man/AT.Rd | 33 ++--- man/LM.bpm.Rd | 30 ++-- man/S.m.Rd | 2 man/S.mPL.Rd | 3 man/SemiParBIVProbit-package.Rd | 43 ++++-- man/SemiParBIVProbit.Rd | 92 ++++++++------ man/SemiParBIVProbitObject.Rd | 58 +++------ man/VuongClarke.bcm.Rd | 4 man/adjCov.Rd | 2 man/adjCovSD.Rd | 2 man/bprobgHs.Rd | 4 man/bprobgHsPL.Rd | 4 man/bprobgHsPO.Rd | 12 - man/bprobgHsSS.Rd | 6 man/est.prev.Rd | 12 + man/gt.bpm.Rd | 17 ++ man/mb.Rd | 63 +++++++-- man/plot.SemiParBIVProbit.Rd | 8 - man/predict.SemiParBIVProbit.Rd | 4 man/print.AT.Rd | 6 man/print.SemiParBIVProbit.Rd | 2 man/print.est.prev.Rd | 4 man/print.mb.Rd |only man/print.summary.SemiParBIVProbit.Rd | 2 man/sem.checks.Rd | 2 man/startSS.Rd | 2 man/summary.SemiParBIVProbit.Rd | 40 +++--- man/working.comp.Rd | 2 man/working.comp1.Rd | 2 man/working.comp3.Rd | 2 57 files changed, 934 insertions(+), 476 deletions(-)
More information about SemiParBIVProbit at CRAN
Permanent link
Title: Deconvolution of Tumour Profiles
Description: Deconvolution of mixed tumour profiles into normal and cancer for each patient, using
the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires
mixed tumour profiles and a set of unmatched "basis" normal profiles.
Author: Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D
Morris [aut], Paul C Boutros [aut, cre]
Maintainer: Paul C Boutros
Diff between ISOpureR versions 1.0.4 dated 2014-11-16 and 1.0.8 dated 2015-01-08
ISOpureR-1.0.4/ISOpureR/inst/extdata/Beer/beer.ISOpureS1model.2500.transcripts.43.patients.RData |only ISOpureR-1.0.4/ISOpureR/inst/extdata/Beer/beer.ISOpureS2model.2500.transcripts.43.patients.rounded.RData |only ISOpureR-1.0.4/ISOpureR/inst/extdata/Beer/beer.normaldata.2500.transcripts.RData |only ISOpureR-1.0.4/ISOpureR/inst/extdata/Beer/beer.tumordata.2500.transcripts.43.patients.RData |only ISOpureR-1.0.8/ISOpureR/DESCRIPTION | 12 +-- ISOpureR-1.0.8/ISOpureR/MD5 | 40 +++++----- ISOpureR-1.0.8/ISOpureR/NAMESPACE | 2 ISOpureR-1.0.8/ISOpureR/NEWS |only ISOpureR-1.0.8/ISOpureR/R/ISOpure.util.logsum.R | 8 +- ISOpureR-1.0.8/ISOpureR/R/RcppExports.R |only ISOpureR-1.0.8/ISOpureR/inst/doc/ISOpureRGuide.Rnw | 36 ++++----- ISOpureR-1.0.8/ISOpureR/inst/doc/ISOpureRGuide.pdf |binary ISOpureR-1.0.8/ISOpureR/inst/extdata/Beer/beer.ISOpureS1model.1000.transcripts.30.patients.RData |only ISOpureR-1.0.8/ISOpureR/inst/extdata/Beer/beer.ISOpureS2model.1000.transcripts.30.patients.RData |only ISOpureR-1.0.8/ISOpureR/inst/extdata/Beer/beer.normaldata.1000.transcripts.RData |only ISOpureR-1.0.8/ISOpureR/inst/extdata/Beer/beer.tumordata.1000.transcripts.30.patients.RData |only ISOpureR-1.0.8/ISOpureR/inst/tests/test_ISOpure_step1_beer.R | 4 - ISOpureR-1.0.8/ISOpureR/inst/tests/test_ISOpure_step2_beer.R | 6 - ISOpureR-1.0.8/ISOpureR/src |only ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS1.model_optimize.kappa_vv_omega_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS1.model_optimize.mm_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS1.model_optimize.theta_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS2.model_optimize.cc_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS2.model_optimize.kappa_vv_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/tests/test.ISOpureS2.model_optimize.theta_functions.R | 4 - ISOpureR-1.0.8/ISOpureR/vignettes/ISOpureRGuide.Rnw | 36 ++++----- 26 files changed, 89 insertions(+), 79 deletions(-)
Title: A Unified Framework for Input-Output Operations in R
Description: One function to read files. One function to write files. One
function to direct plots to screen or file. Automatic file format inference
and directory structure creation.
Author: David J. H. Shih
Maintainer: David J. H. Shih
Diff between io versions 0.2.1 dated 2014-12-19 and 0.2.2 dated 2015-01-08
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/hdf5.R | 8 +++++--- tests/testthat/helper.R | 19 ++++++++++++++++++- 4 files changed, 31 insertions(+), 11 deletions(-)
More information about interferenceCI at CRAN
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Title: Visually Exploring Random Forests
Description: Graphics for Random Forests using the randomForestSRC package for survival, regression and
classification forests and ggplot2 package plotting.
Author: John Ehrlinger
Maintainer: John Ehrlinger
Diff between ggRandomForests versions 1.1.2 dated 2014-12-25 and 1.1.3 dated 2015-01-08
ggRandomForests-1.1.2/ggRandomForests/R/gg_error.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_interaction.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_minimal_depth.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_minimal_vimp.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_partial.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_partial_coplot.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_rfsrc.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_roc.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_survival.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_variable.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/gg_vimp.ggRandomForests.R |only ggRandomForests-1.1.2/ggRandomForests/R/print.gg_error.R |only ggRandomForests-1.1.2/ggRandomForests/R/print.gg_interaction.R |only ggRandomForests-1.1.2/ggRandomForests/R/print.gg_rfsrc.R |only ggRandomForests-1.1.2/ggRandomForests/R/quantile_cuts.R |only ggRandomForests-1.1.2/ggRandomForests/R/rebuild_cache_datasets.R |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestRegression.R |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestRegression.Rmd |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestRegression.html |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestSurvival.R |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestSurvival.Rnw |only ggRandomForests-1.1.2/ggRandomForests/inst/doc/randomForestSurvival.pdf |only ggRandomForests-1.1.2/ggRandomForests/man/gg_error.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_interaction.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_minimal_depth.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_minimal_vimp.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_rfsrc.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_roc.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_survival.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_variable.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/gg_vimp.ggRandomForests.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/print.gg_error.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/print.gg_interaction.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/print.gg_rfsrc.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/quantile_cuts.Rd |only ggRandomForests-1.1.2/ggRandomForests/man/rebuild_cache_datasets.Rd |only ggRandomForests-1.1.2/ggRandomForests/vignettes/randomForestRegression.Rmd |only ggRandomForests-1.1.2/ggRandomForests/vignettes/randomForestSurvival-concordance.tex |only ggRandomForests-1.1.2/ggRandomForests/vignettes/randomForestSurvival.Rnw |only ggRandomForests-1.1.3/ggRandomForests/.Rinstignore | 1 ggRandomForests-1.1.3/ggRandomForests/DESCRIPTION | 14 ggRandomForests-1.1.3/ggRandomForests/MD5 | 306 +++++----- ggRandomForests-1.1.3/ggRandomForests/NAMESPACE | 27 ggRandomForests-1.1.3/ggRandomForests/NEWS | 18 ggRandomForests-1.1.3/ggRandomForests/R/calc_roc.R | 50 - ggRandomForests-1.1.3/ggRandomForests/R/combine.gg_partial.R | 5 ggRandomForests-1.1.3/ggRandomForests/R/gg_error.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_interaction.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_minimal_depth.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_minimal_vimp.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_partial.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_partial_coplot.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_rfsrc.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_roc.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_survival.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_variable.R |only ggRandomForests-1.1.3/ggRandomForests/R/gg_vimp.R |only ggRandomForests-1.1.3/ggRandomForests/R/interaction_data.R | 6 ggRandomForests-1.1.3/ggRandomForests/R/kaplan.R | 15 ggRandomForests-1.1.3/ggRandomForests/R/nelson.R | 29 ggRandomForests-1.1.3/ggRandomForests/R/partial_coplot_data.R | 12 ggRandomForests-1.1.3/ggRandomForests/R/partial_data.R | 11 ggRandomForests-1.1.3/ggRandomForests/R/partial_surface_data.R |only ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_error.R | 48 + ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_interaction.R | 46 + ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_minimal_depth.R | 52 + ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_minimal_vimp.R | 56 + ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_partial.R | 83 ++ ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_partial_list.R | 102 ++- ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_rfsrc.R | 167 ++--- ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_roc.R | 16 ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_survival.R | 16 ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_variable.R | 225 ++++--- ggRandomForests-1.1.3/ggRandomForests/R/plot.gg_vimp.R | 36 - ggRandomForests-1.1.3/ggRandomForests/R/print.gg_minimal_depth.R | 10 ggRandomForests-1.1.3/ggRandomForests/R/quantile_pts.R |only ggRandomForests-1.1.3/ggRandomForests/R/rfsrc_cache_datasets.R |only ggRandomForests-1.1.3/ggRandomForests/R/rfsrc_data.R | 10 ggRandomForests-1.1.3/ggRandomForests/R/surface_matrix.gg_partial_coplot.R | 11 ggRandomForests-1.1.3/ggRandomForests/R/varsel_data.R | 8 ggRandomForests-1.1.3/ggRandomForests/README.md | 1 ggRandomForests-1.1.3/ggRandomForests/build/vignette.rds |binary ggRandomForests-1.1.3/ggRandomForests/data/datalist | 8 ggRandomForests-1.1.3/ggRandomForests/data/interaction_Boston.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/interaction_airq.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/interaction_iris.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/interaction_mtcars.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/interaction_pbc.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/interaction_veteran.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_Boston.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_Boston_surf.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_airq.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_Boston.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_Boston2.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_pbc.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_pbc2.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_pbc_surf.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_pbc_surf2.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_iris.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_mtcars.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_pbc.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/partial_pbc_surf.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_pbc_surf2.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_pbc_time.rda |only ggRandomForests-1.1.3/ggRandomForests/data/partial_veteran.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_Boston.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_airq.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_iris.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_mtcars.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_pbc.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_pbc_test.rda |only ggRandomForests-1.1.3/ggRandomForests/data/rfsrc_veteran.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_Boston.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_airq.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_iris.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_mtcars.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_pbc.rda |binary ggRandomForests-1.1.3/ggRandomForests/data/varsel_veteran.rda |binary ggRandomForests-1.1.3/ggRandomForests/inst/doc/fig-rfr |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Regression.R |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Regression.Rmd |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Regression.html |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Survival.R |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Survival.Rnw |only ggRandomForests-1.1.3/ggRandomForests/inst/doc/randomForestSRC-Survival.pdf |only ggRandomForests-1.1.3/ggRandomForests/man/calc_roc.rfsrc.Rd | 1 ggRandomForests-1.1.3/ggRandomForests/man/gg_error.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_interaction.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_minimal_depth.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_minimal_vimp.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_partial.Rd | 60 + ggRandomForests-1.1.3/ggRandomForests/man/gg_partial_coplot.ggRandomForests.Rd | 56 - ggRandomForests-1.1.3/ggRandomForests/man/gg_rfsrc.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_roc.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_survival.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_variable.rfsrc.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/gg_vimp.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/interaction_data.Rd | 6 ggRandomForests-1.1.3/ggRandomForests/man/kaplan.Rd | 7 ggRandomForests-1.1.3/ggRandomForests/man/nelson.Rd | 16 ggRandomForests-1.1.3/ggRandomForests/man/partial_Boston_surf.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/partial_coplot_data.Rd | 9 ggRandomForests-1.1.3/ggRandomForests/man/partial_data.Rd | 9 ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_error.Rd | 48 + ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_interaction.Rd | 44 + ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_minimal_depth.Rd | 51 + ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_minimal_vimp.Rd | 56 + ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_partial.Rd | 83 ++ ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_partial_list.Rd | 87 ++ ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_rfsrc.Rd | 56 + ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_roc.Rd | 16 ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_survival.Rd | 16 ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_variable.Rd | 67 +- ggRandomForests-1.1.3/ggRandomForests/man/plot.gg_vimp.Rd | 36 - ggRandomForests-1.1.3/ggRandomForests/man/quantile_pts.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/rfsrc_cache_datasets.Rd |only ggRandomForests-1.1.3/ggRandomForests/man/rfsrc_data.Rd | 7 ggRandomForests-1.1.3/ggRandomForests/man/surface_matrix.Rd | 6 ggRandomForests-1.1.3/ggRandomForests/man/varsel_data.Rd | 8 ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_error.R | 4 ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_interaction.R | 72 ++ ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_minimal_depth.R | 79 ++ ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_minimal_vimp.R | 69 ++ ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_partial.R | 85 ++ ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_partial_coplot.R |only ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_rfsrc.R | 69 -- ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_roc.R | 91 ++ ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_survival.R | 119 ++- ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_variable.R | 78 +- ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_gg_vimp.R | 49 + ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_quantile_pts.R |only ggRandomForests-1.1.3/ggRandomForests/tests/testthat/test_surface_matrix.R |only ggRandomForests-1.1.3/ggRandomForests/vignettes/fig-rfs |only ggRandomForests-1.1.3/ggRandomForests/vignettes/ggRandomForests.bib | 14 ggRandomForests-1.1.3/ggRandomForests/vignettes/randomForestSRC-Regression.Rmd |only ggRandomForests-1.1.3/ggRandomForests/vignettes/randomForestSRC-Survival-concordance.tex |only ggRandomForests-1.1.3/ggRandomForests/vignettes/randomForestSRC-Survival.Rnw |only 177 files changed, 2042 insertions(+), 821 deletions(-)
More information about ggRandomForests at CRAN
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Title: FastHCS Robust Algortihm for Principal Component Analysis
Description: The FastHCS algorithm of Schmitt and Vakili (2014) for high-dimensional, robust PCA modelling and associated outlier detection and diagnostic tools.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili
Diff between FastHCS versions 0.0.3 dated 2014-11-13 and 0.0.4 dated 2015-01-08
FastHCS-0.0.3/FastHCS/man/numStarts.Rd |only FastHCS-0.0.4/FastHCS/DESCRIPTION | 8 +- FastHCS-0.0.4/FastHCS/MD5 | 24 ++++---- FastHCS-0.0.4/FastHCS/NAMESPACE | 3 - FastHCS-0.0.4/FastHCS/R/FastHCS.R | 36 ++++++++---- FastHCS-0.0.4/FastHCS/man/DnaAlteration.Rd | 2 FastHCS-0.0.4/FastHCS/man/FHCSnumStarts.Rd |only FastHCS-0.0.4/FastHCS/man/FastHCS-package.Rd | 2 FastHCS-0.0.4/FastHCS/man/FastHCS.Rd | 28 +++++++-- FastHCS-0.0.4/FastHCS/man/Ionosphere.Rd | 2 FastHCS-0.0.4/FastHCS/man/MultipleFeatures.Rd | 2 FastHCS-0.0.4/FastHCS/man/Tablets.Rd | 2 FastHCS-0.0.4/FastHCS/man/plot.FastHCS.Rd | 2 FastHCS-0.0.4/FastHCS/src/FastHCS.cpp | 73 ++++++++++++++------------ 14 files changed, 109 insertions(+), 75 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: An R package for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
Diff between epiR versions 0.9-61 dated 2014-12-17 and 0.9-62 dated 2015-01-08
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/epi.indirectadj.R | 2 +- man/epi.indirectadj.Rd | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects,
both in memory and out of memory.
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
RStudio [cph]
Maintainer: Hadley Wickham
Diff between dplyr versions 0.3.0.2 dated 2014-10-11 and 0.4.0 dated 2015-01-08
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Title: Expected Maximum Profit Classification Performance Measure
Description: Functions for estimating EMP (Expected Maximum Profit Measure) in Credit Risk Scoring and Customer Churn Prediction, according to Verbraken et al (2013, 2014).
Author: Cristian Bravo, Seppe vanden Broucke and Thomas Verbraken
Maintainer: Cristian Bravo
Diff between EMP versions 1.0.2 dated 2014-08-24 and 2.0.0 dated 2015-01-08
EMP-1.0.2/EMP/R/EMP_CS.R |only EMP-1.0.2/EMP/R/calcROC.R |only EMP-1.0.2/EMP/man/EMP_CS.Rd |only EMP-1.0.2/EMP/man/calcROC.Rd |only EMP-2.0.0/EMP/DESCRIPTION | 17 ++++++------- EMP-2.0.0/EMP/MD5 | 19 ++++++++------ EMP-2.0.0/EMP/NAMESPACE | 1 EMP-2.0.0/EMP/NEWS |only EMP-2.0.0/EMP/R/empChurn.R |only EMP-2.0.0/EMP/R/empCreditScoring.R |only EMP-2.0.0/EMP/R/empRocInfo.R |only EMP-2.0.0/EMP/inst/CITATION | 44 +++++++++++++++++++++++----------- EMP-2.0.0/EMP/man/EMP-package.Rd | 43 ++++++++++++++++++--------------- EMP-2.0.0/EMP/man/empChurn.Rd |only EMP-2.0.0/EMP/man/empCreditScoring.Rd |only EMP-2.0.0/EMP/man/empRocInfo.Rd |only 16 files changed, 75 insertions(+), 49 deletions(-)
Title: Bayesian Network Feature Finder
Description: Provides a full package of posterior inference, model comparison, and graphical illustration of model fitting. A parallel computing algorithm for the Markov chain Monte Carlo (MCMC) based posterior inference and an Expectation-Maximization (EM) based algorithm for posterior approximation are are developed, both of which greatly reduce the computational time for model inference.
Author: Zhou Lan, Yize Zhao, Jian Kang, Tianwei Yu
Maintainer: Zhou Lan
Diff between BANFF versions 0.1 dated 2014-12-29 and 0.2 dated 2015-01-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/main.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Autoregressive Conditional Poisson
Description: Time series analysis of count data
Author: Siakoulis Vasileios
Maintainer: Siakoulis Vasilios
Diff between acp versions 1.0 dated 2014-07-23 and 1.1 dated 2015-01-08
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/acp.R | 12 ++++-------- 3 files changed, 11 insertions(+), 15 deletions(-)
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb]
Maintainer: Edzer Pebesma
Diff between sp versions 1.0-16 dated 2014-11-09 and 1.0-17 dated 2015-01-08
DESCRIPTION | 14 +++++----- MD5 | 25 +++++++++--------- R/SpatialPoints-methods.R | 14 +++++++--- R/SpatialPointsDataFrame-methods.R | 2 - R/merge.R | 51 +++++++++++++++++++++---------------- R/over.R | 2 - data/meuse.area.rda |only demo/meuse.R | 3 ++ inst/ChangeLog | 19 +++++++++++++ inst/doc/csdacm.pdf |binary inst/doc/intro_sp.pdf |binary inst/doc/over.pdf |binary man/merge.Rd | 9 ++++-- man/meuse.riv.Rd | 21 +++++++++++++-- 14 files changed, 108 insertions(+), 52 deletions(-)