Title: Data Analysis of T-cell Receptor Repertoires
Diff between tcR versions 1.0 dated 2014-12-12 and 1.1 dated 2015-01-10
Description: Platform for the advanced analysis of T-cell receptor repertoires data and visualisation of the analysis results.
Author: Vadim Nazarov, Mikhail Pogorelyy
Maintainer: Vadim Nazarov
DESCRIPTION | 13 +--
MD5 | 161 +++++++++++++++++++++---------------------
R/crosses.R | 26 +++---
R/dataproc.R | 6 -
R/diversity.R | 133 +++++++++++++++++++++++++++++++---
R/measures.R | 34 +++++++-
R/plots.R | 12 ++-
R/shared.R | 6 +
R/stats.R | 18 ++--
README.md |only
inst/doc/tcrvignette.R | 22 +++--
inst/doc/tcrvignette.Rnw | 6 +
inst/doc/tcrvignette.pdf |binary
man/AA_TABLE.Rd | 3
man/apply.symm.Rd | 3
man/assymetry.Rd | 3
man/barcodes.to.reads.Rd | 3
man/beta.prob.Rd | 3
man/bootstrap.tcr.Rd | 3
man/check.distribution.Rd | 3
man/codon.variants.Rd | 3
man/column.summary.Rd | 3
man/contamination.stats.Rd | 3
man/convergence.index.Rd | 3
man/cosine.sharing.Rd | 3
man/cosine.similarity.Rd | 16 ++--
man/entropy.Rd | 3
man/entropy.seg.Rd | 3
man/find.clonotypes.Rd | 3
man/find.similar.sequences.Rd | 3
man/freq.segments.Rd | 3
man/gc.content.Rd | 3
man/generate.kmers.Rd | 3
man/generate.tcr.Rd | 3
man/get.all.substrings.Rd | 3
man/get.deletions.alpha.Rd | 3
man/get.inframes.Rd | 3
man/get.kmers.Rd | 3
man/get.n.barcodes.Rd | 3
man/gibbs.sampler.Rd | 3
man/has.class.Rd | 3
man/intersect.Rd | 29 +++----
man/inverse.simpson.Rd | 22 ++++-
man/kmer.profile.Rd | 3
man/kmer.table.Rd | 3
man/loglikelihood.Rd | 3
man/matrixdiagcopy.Rd | 3
man/mitcr.stats.Rd | 3
man/parse.file.Rd | 3
man/parse.file.list.Rd | 3
man/parse.folder.Rd | 3
man/pca.segments.Rd | 3
man/permutedf.Rd | 3
man/rarefaction.Rd | 11 +-
man/revcomp.Rd | 3
man/reverse.string.Rd | 3
man/sample.clones.Rd | 3
man/sample2D.Rd | 3
man/segments.alphabets.Rd | 3
man/segments.list.Rd | 3
man/set.pb.Rd | 3
man/set.rank.Rd | 3
man/shared.repertoire.Rd | 6 +
man/spectratyping.Rd | 3
man/startmitcr.Rd | 3
man/tailbound.proportion.Rd | 3
man/top.cross.Rd | 3
man/top.fun.Rd | 3
man/twinsdata.Rd | 3
man/vis.V.usage.Rd | 3
man/vis.clonal.dynamics.Rd | 3
man/vis.count.len.Rd | 3
man/vis.group.boxplot.Rd | 3
man/vis.heatmap.Rd | 3
man/vis.kmer.histogram.Rd | 3
man/vis.number.count.Rd | 3
man/vis.pca.Rd | 3
man/vis.radarlike.Rd | 3
man/vis.rarefaction.Rd | 5 +
man/vis.top.proportions.Rd | 3
src/Makevars | 2
vignettes/tcrvignette.Rnw | 6 +
82 files changed, 475 insertions(+), 242 deletions(-)
Title: Deprecated 'classic' Rcpp API
Diff between RcppClassic versions 0.9.5 dated 2014-01-25 and 0.9.6 dated 2015-01-10
Description: The RcppClassic package provides a deprecated C++ library which
facilitates the integration of R and C++.
New projects should use the new Rcpp API in the Rcpp package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss,
and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel
RcppClassic-0.9.5/RcppClassic/inst/examples/RcppClassicExample/R/foo.R |only
RcppClassic-0.9.5/RcppClassic/inst/examples/RcppClassicExample/src/foo.cpp |only
RcppClassic-0.9.5/RcppClassic/vignettes/Makefile |only
RcppClassic-0.9.5/RcppClassic/vignettes/unitTests-results |only
RcppClassic-0.9.6/RcppClassic/ChangeLog | 21 ++++
RcppClassic-0.9.6/RcppClassic/DESCRIPTION | 11 +-
RcppClassic-0.9.6/RcppClassic/MD5 | 37 +++----
RcppClassic-0.9.6/RcppClassic/README.md | 13 +-
RcppClassic-0.9.6/RcppClassic/build/vignette.rds |binary
RcppClassic-0.9.6/RcppClassic/cleanup | 3
RcppClassic-0.9.6/RcppClassic/inst/doc/RcppClassic-intro.R | 9 +
RcppClassic-0.9.6/RcppClassic/inst/doc/RcppClassic-intro.Rnw | 50 ++++++----
RcppClassic-0.9.6/RcppClassic/inst/doc/RcppClassic-intro.pdf |binary
RcppClassic-0.9.6/RcppClassic/inst/doc/RcppClassic-unitTests.pdf |binary
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/DESCRIPTION | 15 +--
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/NAMESPACE | 6 -
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/R/twoTimes.R |only
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/man/RcppClassicExample-package.Rd | 7 -
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/src/Makevars | 2
RcppClassic-0.9.6/RcppClassic/inst/examples/RcppClassicExample/src/twoTimesImpl.cpp |only
RcppClassic-0.9.6/RcppClassic/src/Makevars | 10 +-
RcppClassic-0.9.6/RcppClassic/vignettes/RcppClassic-intro.Rnw | 50 ++++++----
22 files changed, 140 insertions(+), 94 deletions(-)
Title: Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
Diff between hsphase versions 2.0.0 dated 2014-06-27 and 2.0.1 dated 2015-01-10
Description: Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data
Author: Mohammad Ferdosi
Maintainer: Mohammad Ferdosi
DESCRIPTION | 11 ++++++-----
MD5 | 8 ++++----
build/vignette.rds |binary
inst/CITATION | 12 ++++++------
man/hsphase-package.Rd | 4 ++--
5 files changed, 18 insertions(+), 17 deletions(-)
Title: Extended Rasch Modeling
Diff between eRm versions 0.15-4 dated 2014-02-05 and 0.15-5 dated 2015-01-10
Description: eRm fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Löf-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, various ICC and related plots, automated stepwise item elimination, simulation module for various binary data matrices. An eRm platform is provided at R-forge (see URL).
Author: Patrick Mair [cre, aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Thomas Rusch [ctb]
Maintainer: Patrick Mair
eRm-0.15-4/eRm/R/pifit.internal.r |only
eRm-0.15-4/eRm/inst/NEWSRd2txt.R |only
eRm-0.15-4/eRm/inst/doc/UCML.pdf |only
eRm-0.15-4/eRm/inst/doc/UCML.svg |only
eRm-0.15-4/eRm/inst/doc/eRm_object_tree.pdf |only
eRm-0.15-4/eRm/inst/doc/eRmvig.bib |only
eRm-0.15-4/eRm/inst/doc/modelhierarchy.pdf |only
eRm-0.15-4/eRm/vignettes/UCML.svg |only
eRm-0.15-5/eRm/.Rinstignore | 8
eRm-0.15-5/eRm/DESCRIPTION | 26
eRm-0.15-5/eRm/MD5 | 200 +--
eRm-0.15-5/eRm/NAMESPACE | 29
eRm-0.15-5/eRm/NEWS | 228 ++-
eRm-0.15-5/eRm/R/NPtest.R | 8
eRm-0.15-5/eRm/R/SepRel.R |only
eRm-0.15-5/eRm/R/anova.eRm.R |only
eRm-0.15-5/eRm/R/llra.internals.R | 201 +--
eRm-0.15-5/eRm/R/personfit.ppar.R | 45
eRm-0.15-5/eRm/R/pifit.internal.R |only
eRm-0.15-5/eRm/R/plotGOF.LR.R | 16
eRm-0.15-5/eRm/R/plotGR.R | 101 -
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eRm-0.15-5/eRm/R/plotPWmap.R | 58
eRm-0.15-5/eRm/R/plotTR.R | 60
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eRm-0.15-5/eRm/data/lrsmdat.rda |binary
eRm-0.15-5/eRm/data/pcmdat.rda |binary
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eRm-0.15-5/eRm/data/raschdat1_RM_lrres2.RData |binary
eRm-0.15-5/eRm/data/raschdat1_RM_plotDIF.RData |binary
eRm-0.15-5/eRm/data/raschdat2.rda |binary
eRm-0.15-5/eRm/data/raschdat3.rda |binary
eRm-0.15-5/eRm/data/raschdat4.rda |binary
eRm-0.15-5/eRm/data/rsmdat.rda |binary
eRm-0.15-5/eRm/data/xmpl.RData |binary
eRm-0.15-5/eRm/data/xmplbig.RData |binary
eRm-0.15-5/eRm/inst/CITATION | 182 +-
eRm-0.15-5/eRm/inst/NEWS.Rd | 12
eRm-0.15-5/eRm/inst/NEWS.pdf |binary
eRm-0.15-5/eRm/inst/doc/eRm.R | 216 +--
eRm-0.15-5/eRm/inst/doc/eRm.Rnw | 450 +++----
eRm-0.15-5/eRm/inst/doc/eRm.pdf |binary
eRm-0.15-5/eRm/man/IC.Rd | 1
eRm-0.15-5/eRm/man/LLRA.Rd | 8
eRm-0.15-5/eRm/man/LLTM.Rd | 1
eRm-0.15-5/eRm/man/LPCM.Rd | 7
eRm-0.15-5/eRm/man/LRSM.Rd | 7
eRm-0.15-5/eRm/man/LRtest.Rd | 5
eRm-0.15-5/eRm/man/MLoef.Rd | 52
eRm-0.15-5/eRm/man/NPtest.Rd | 203 +--
eRm-0.15-5/eRm/man/PCM.Rd | 5
eRm-0.15-5/eRm/man/RM.Rd | 5
eRm-0.15-5/eRm/man/RSM.Rd | 7
eRm-0.15-5/eRm/man/RSctr.Rd | 1
eRm-0.15-5/eRm/man/RSmpl.Rd | 1
eRm-0.15-5/eRm/man/RaschSampler.Rd | 7
eRm-0.15-5/eRm/man/SepRel.Rd |only
eRm-0.15-5/eRm/man/Waldtest.Rd | 1
eRm-0.15-5/eRm/man/anova.eRm.Rd |only
eRm-0.15-5/eRm/man/anova.llra.Rd | 1
eRm-0.15-5/eRm/man/build_W.Rd | 5
eRm-0.15-5/eRm/man/collapse_W.Rd | 5
eRm-0.15-5/eRm/man/eRm-package.Rd | 32
eRm-0.15-5/eRm/man/eRm.data.Rd | 1
eRm-0.15-5/eRm/man/gofIRT.Rd | 1
eRm-0.15-5/eRm/man/item_info.Rd | 5
eRm-0.15-5/eRm/man/itemfit.ppar.Rd | 1
eRm-0.15-5/eRm/man/llra.datprep.Rd | 5
eRm-0.15-5/eRm/man/llraDat1.Rd | 64 -
eRm-0.15-5/eRm/man/llraDat2.Rd | 56
eRm-0.15-5/eRm/man/llradat3.Rd | 20
eRm-0.15-5/eRm/man/person.parameter.Rd | 7
eRm-0.15-5/eRm/man/phi.range.Rd | 21
eRm-0.15-5/eRm/man/plotDIF.Rd | 5
eRm-0.15-5/eRm/man/plotGR.Rd | 5
eRm-0.15-5/eRm/man/plotICC.Rd | 1
eRm-0.15-5/eRm/man/plotINFO.Rd | 46
eRm-0.15-5/eRm/man/plotPImap.Rd | 3
eRm-0.15-5/eRm/man/plotPWmap.Rd | 27
eRm-0.15-5/eRm/man/plotTR.Rd | 5
eRm-0.15-5/eRm/man/predict.ppar.Rd | 1
eRm-0.15-5/eRm/man/print.eRm.Rd | 3
eRm-0.15-5/eRm/man/rsampler.Rd | 36
eRm-0.15-5/eRm/man/rsctrl.Rd | 12
eRm-0.15-5/eRm/man/rsextrmat.Rd | 1
eRm-0.15-5/eRm/man/rsextrobj.Rd | 1
eRm-0.15-5/eRm/man/rstats.Rd | 1
eRm-0.15-5/eRm/man/sim.2pl.Rd | 61
eRm-0.15-5/eRm/man/sim.locdep.Rd | 1
eRm-0.15-5/eRm/man/sim.rasch.Rd | 1
eRm-0.15-5/eRm/man/sim.xdim.Rd | 1
eRm-0.15-5/eRm/man/stepwiseIt.Rd | 1
eRm-0.15-5/eRm/man/summary.RSctr.Rd | 1
eRm-0.15-5/eRm/man/summary.RSmpl.Rd | 1
eRm-0.15-5/eRm/man/summary.llra.Rd | 5
eRm-0.15-5/eRm/man/test_info.Rd | 11
eRm-0.15-5/eRm/man/thresholds.Rd | 1
eRm-0.15-5/eRm/man/xmpl.Rd | 1
eRm-0.15-5/eRm/vignettes/eRm.Rnw | 450 +++----
eRm-0.15-5/eRm/vignettes/eRmvig.bib | 1534 +++++++++++++------------
109 files changed, 2443 insertions(+), 2194 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Diff between nlme versions 3.1-118 dated 2014-10-07 and 3.1-119 dated 2015-01-10
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
R-core [aut, cre]
Maintainer: R-core
ChangeLog | 12 +++++++++++-
DESCRIPTION | 8 ++++----
MD5 | 19 ++++++++++---------
R/gnls.R | 2 +-
R/lme.R | 2 +-
R/newMethods.R | 2 +-
R/nlme.R | 6 +++---
R/pdMat.R | 2 +-
R/reStruct.R | 2 +-
man/bdf.Rd | 3 ++-
tests/nlme2.R |only
11 files changed, 35 insertions(+), 23 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Diff between MASS versions 7.3-35 dated 2014-09-30 and 7.3-37 dated 2015-01-10
Description: Functions and datasets to support Venables and Ripley,
'Modern Applied Statistics with S' (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
R/glmmPQL.R | 7 ++++---
R/loglm.R | 2 +-
R/neg.bin.R | 2 +-
R/negbin.R | 3 +--
R/polr.R | 1 -
inst/NEWS | 2 +-
inst/scripts/ch10.R | 24 +++++++++++-------------
man/bacteria.Rd | 6 ++++--
man/corresp.Rd | 2 +-
man/denumerate.Rd | 2 +-
tests/Examples/MASS-Ex.Rout.save | 26 +++++++++-----------------
13 files changed, 51 insertions(+), 60 deletions(-)
Title: Bootstrap Functions (originally by Angelo Canty for S)
Diff between boot versions 1.3-13 dated 2014-09-30 and 1.3-14 dated 2015-01-10
Description: functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
Author: Angelo Canty [aut],
Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/bootfuns.q | 4 ----
R/bootpracs.q | 2 +-
man/EEF.profile.Rd | 2 +-
6 files changed, 16 insertions(+), 15 deletions(-)
Title: Maxwell Bolzano Bose Einstein Fermi Dirac distribution and
exposure curve
Diff between mbbefd versions 0.1 dated 2013-10-30 and 0.5 dated 2015-01-10
Description: It contains the definition of Maxwell Bolzano Bose Einstein Fermi Dirac (MBBEFD) distribution (distribution function, density, quantile functions) as well as MBBEFD exposure curve, used in actuarial application to price reinsurance contracts. The vignette shows code snippets to fit the distribution to empirical data.
Author: Giorgio Spedicato
Maintainer: Giorgio Spedicato
ChangeLog | 5 +
DESCRIPTION | 14 +++--
MD5 | 29 ++++++----
NEWS | 7 +-
R/distributionDefinition.R | 51 ++++++++++++-------
build |only
inst/CITATION | 8 +--
inst/doc/mbbefd.R | 86 ++++++++++++++++++++++++++++----
inst/doc/mbbefd.Rnw | 109 ++++++++++++++++++++++++++++++++++++++---
inst/doc/mbbefd.pdf |binary
man/mbbefd-package.Rd | 9 +--
man/mbbefdDistribution.Rd | 16 +++---
tests |only
vignettes/mbbefd-distrPlot.pdf |only
vignettes/mbbefd-drateplot.pdf |only
vignettes/mbbefd.Rnw | 109 ++++++++++++++++++++++++++++++++++++++---
vignettes/mbbefd.bib | 43 ++++++++++------
17 files changed, 395 insertions(+), 91 deletions(-)
Title: CRAN Task Views
Diff between ctv versions 0.8-0 dated 2014-07-31 and 0.8-1 dated 2015-01-10
Description: Server-side and client-side tools for task views
to CRAN-style repositories
Author: Achim Zeileis [aut, cre],
Kurt Hornik [aut]
Maintainer: Achim Zeileis
ctv-0.8-0/ctv/inst/ctv/Bayesian.html |only
ctv-0.8-0/ctv/inst/ctv/ChemPhys.html |only
ctv-0.8-0/ctv/inst/ctv/ClinicalTrials.html |only
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ctv-0.8-1/ctv/NEWS | 6
ctv-0.8-1/ctv/R/ctv-server.R | 52
ctv-0.8-1/ctv/build/vignette.rds |binary
ctv-0.8-1/ctv/inst/ctv/Bayesian.ctv | 10
ctv-0.8-1/ctv/inst/ctv/ChemPhys.ctv | 13
ctv-0.8-1/ctv/inst/ctv/ClinicalTrials.ctv | 4
ctv-0.8-1/ctv/inst/ctv/Cluster.ctv | 55
ctv-0.8-1/ctv/inst/ctv/DifferentialEquations.ctv | 9
ctv-0.8-1/ctv/inst/ctv/Distributions.ctv | 22
ctv-0.8-1/ctv/inst/ctv/Econometrics.ctv | 26
ctv-0.8-1/ctv/inst/ctv/Environmetrics.ctv | 9
ctv-0.8-1/ctv/inst/ctv/ExperimentalDesign.ctv | 7
ctv-0.8-1/ctv/inst/ctv/Finance.ctv | 72 -
ctv-0.8-1/ctv/inst/ctv/Genetics.ctv | 19
ctv-0.8-1/ctv/inst/ctv/Graphics.ctv | 16
ctv-0.8-1/ctv/inst/ctv/HighPerformanceComputing.ctv | 58
ctv-0.8-1/ctv/inst/ctv/MachineLearning.ctv | 45
ctv-0.8-1/ctv/inst/ctv/MedicalImaging.ctv | 27
ctv-0.8-1/ctv/inst/ctv/MetaAnalysis.ctv | 61
ctv-0.8-1/ctv/inst/ctv/Multivariate.ctv | 11
ctv-0.8-1/ctv/inst/ctv/NaturalLanguageProcessing.ctv | 4
ctv-0.8-1/ctv/inst/ctv/NumericalMathematics.ctv | 70 -
ctv-0.8-1/ctv/inst/ctv/OfficialStatistics.ctv | 46
ctv-0.8-1/ctv/inst/ctv/Optimization.ctv | 79 -
ctv-0.8-1/ctv/inst/ctv/Pharmacokinetics.ctv | 21
ctv-0.8-1/ctv/inst/ctv/Phylogenetics.ctv | 17
ctv-0.8-1/ctv/inst/ctv/Psychometrics.ctv | 56
ctv-0.8-1/ctv/inst/ctv/ReproducibleResearch.ctv | 143 --
ctv-0.8-1/ctv/inst/ctv/Robust.ctv | 71 -
ctv-0.8-1/ctv/inst/ctv/SocialSciences.ctv | 2
ctv-0.8-1/ctv/inst/ctv/Spatial.ctv | 35
ctv-0.8-1/ctv/inst/ctv/SpatioTemporal.ctv | 1103 +++++++++---------
ctv-0.8-1/ctv/inst/ctv/Survival.ctv | 284 +++-
ctv-0.8-1/ctv/inst/ctv/TimeSeries.ctv | 27
ctv-0.8-1/ctv/inst/ctv/WebTechnologies.ctv | 980 ++++++++++-----
ctv-0.8-1/ctv/inst/doc/ctv-howto.R | 2
ctv-0.8-1/ctv/inst/doc/ctv-howto.Rnw | 11
ctv-0.8-1/ctv/inst/doc/ctv-howto.pdf |binary
ctv-0.8-1/ctv/vignettes/ctv-howto.Rnw | 11
74 files changed, 2044 insertions(+), 1561 deletions(-)
Title: aoristic analysis with spatial output (kml)
Diff between aoristic versions 0.5 dated 2014-07-31 and 0.6 dated 2015-01-10
Description: 'Aoristic' is one of the past tenses in Greek and represents an
uncertain occurrence time. Aoristic analysis suggested by Ratcliffe (2002)
is a method to analyze events that do not have exact times of occurrence
but have starting times and ending times. For example, a property crime
database (e.g., burglary) typically has a starting time and ending time of
the crime that could have occurred. Aoristic analysis allocates the
probability of a crime incident occurring at every hour over a 24-hour
period. The probability is aggregated over a study area to create an
aoristic graph.
Using crime incident data with lat/lon, DateTimeFrom, and
DateTimeTo, functions in this package create a total of three (3) kml
files and corresponding aoristic graphs: 1) density and contour; 2) grid
count; and 3) shapefile boundary. (see also:
https://sites.google.com/site/georgekick/software)
Author: George Kikuchi
Maintainer: George Kikuchi
DESCRIPTION | 11 ++++++-----
MD5 | 38 +++++++++++++++++++-------------------
NAMESPACE | 16 +++++++++++++++-
R/aoristic-package.R | 6 +++---
R/aoristic.all.graph.R | 12 ++++++++++--
R/aoristic.density.R | 5 ++++-
R/aoristic.grid.R | 3 ++-
R/aoristic.shp.R | 7 ++++++-
R/aoristic.spdf.R | 3 ++-
demo/aoristic.R | 6 ++++++
man/CouncilDistrict.Rd | 5 +++--
man/aoristic-package.Rd | 3 ++-
man/aoristic.Rd | 5 +++--
man/aoristic.all.graph.Rd | 13 +++++++++++--
man/aoristic.density.Rd | 3 ++-
man/aoristic.df.Rd | 3 ++-
man/aoristic.grid.Rd | 3 ++-
man/aoristic.shp.Rd | 3 ++-
man/aoristic.spdf.Rd | 5 +++--
man/arlington.Rd | 5 +++--
20 files changed, 106 insertions(+), 49 deletions(-)
Title: SYMPHONY in R
Diff between Rsymphony versions 0.1-17 dated 2013-11-13 and 0.1-18 dated 2015-01-10
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik
Rsymphony-0.1-17/Rsymphony/src/SYMPHONY |only
Rsymphony-0.1-18/Rsymphony/DESCRIPTION | 14
Rsymphony-0.1-18/Rsymphony/MD5 | 1351 ----------------------
Rsymphony-0.1-18/Rsymphony/cleanup | 7
Rsymphony-0.1-18/Rsymphony/configure | 44
Rsymphony-0.1-18/Rsymphony/man/Rsymphony_solve.Rd | 2
Rsymphony-0.1-18/Rsymphony/src/Makevars.in | 16
7 files changed, 30 insertions(+), 1404 deletions(-)
Title: Kernel-based Machine Learning Lab
Diff between kernlab versions 0.9-19 dated 2013-11-03 and 0.9-20 dated 2015-01-10
Description: Kernel-based machine learning methods for classification,
regression, clustering, novelty detection, quantile regression
and dimensionality reduction. Among other methods kernlab
includes Support Vector Machines, Spectral Clustering, Kernel
PCA, Gaussian Processes and a QP solver.
Author: Alexandros Karatzoglou [aut, cre],
Alex Smola [aut],
Kurt Hornik [aut]
Maintainer: Alexandros Karatzoglou
DESCRIPTION | 6 +++---
MD5 | 28 ++++++++++++++--------------
build/vignette.rds |binary
data/income.rda |binary
data/musk.rda |binary
data/promotergene.rda |binary
data/reuters.rda |binary
data/spam.rda |binary
data/spirals.rda |binary
data/ticdata.rda |binary
inst/COPYRIGHTS | 4 ++++
inst/doc/kernlab.pdf |binary
src/msufsort.cpp | 1 +
src/msufsort.h | 29 +++++++++++++++++++----------
src/svm.cpp | 7 ++++++-
15 files changed, 47 insertions(+), 28 deletions(-)
Title: Collection of common astronomical conversion routines
Diff between celestial versions 1.1 dated 2013-08-10 and 1.2 dated 2015-01-10
Description: This package includes a number of common astronomy conversion routines, particularly the HMS and degrees schemes, which can be fiddly to convert between on mass due to the textural nature of the former.
Author: Aaron Robotham
Maintainer: Aaron Robotham
DESCRIPTION | 10 +++++-----
MD5 | 12 +++++++++---
NEWS | 4 ++++
R/cosdist.R |only
R/cosvol.R |only
R/skyarea.R |only
man/celestial-package.Rd | 4 ++--
man/cosdist.Rd |only
man/cosvol.Rd |only
man/skyarea.Rd |only
10 files changed, 20 insertions(+), 10 deletions(-)