Sun, 11 Jan 2015

Package secrlinear updated to version 1.0.5 with previous version 1.0.4 dated 2014-12-08

Title: Spatially Explicit Capture-Recapture for Linear Habitats
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'
Author: Murray Efford
Maintainer: Murray Efford

Diff between secrlinear versions 1.0.4 dated 2014-12-08 and 1.0.5 dated 2015-01-11

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Package rfoaas updated to version 0.1.1 with previous version 0.0.5 dated 2014-12-28

Title: R Interface to FOAAS
Description: R access to the FOAAS (F... Off As A Service) web service
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between rfoaas versions 0.0.5 dated 2014-12-28 and 0.1.1 dated 2015-01-11

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Package neldermead updated to version 1.0-10 with previous version 1.0-9 dated 2014-03-02

Title: R port of the Scilab neldermead module
Description: Provides several direct search optimization algorithms based on the simplex method. The provided algorithms are direct search algorithms, i.e. algorithms which do not use the derivative of the cost function. They are based on the update of a simplex. The following algorithms are available: the fixed shape simplex method of Spendley, Hext and Himsworth (unconstrained optimization with a fixed shape simplex), the variable shape simplex method of Nelder and Mead (unconstrained optimization with a variable shape simplex made), and Box's complex method (constrained optimization with a variable shape simplex).
Author: Sebastien Bihorel, Michael Baudin (author of the original module)
Maintainer: Sebastien Bihorel

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Package mailR updated to version 0.4 with previous version 0.3 dated 2014-05-17

Title: A Utility to Send Emails from R
Description: Interface to Apache Commons Email to send emails from R.
Author: Rahul Premraj
Maintainer: Rahul Premraj

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Package classyfire updated to version 0.1-2 with previous version 0.1-1 dated 2014-11-22

Title: Robust multivariate classification using highly optimised SVM ensembles
Description: A collection of functions for the creation and application of highly optimised, robustly evaluated ensembles of support vector machines (SVMs). The package takes care of training individual SVM classifiers using a fast parallel heuristic algorithm, and combines individual classifiers into ensembles. Robust metrics of classification performance are offered by bootstrap resampling and permutation testing.
Author: Eleni Chatzimichali and Conrad Bessant
Maintainer: Eleni Chatzimichali

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Package AGD updated to version 0.32 with previous version 0.31 dated 2014-12-21

Title: Analysis of Growth Data
Description: Tools for NIHES course EP18 'Analysis of Growth Data', May 22-23 2012, Rotterdam.
Author: Stef van Buuren
Maintainer: Stef van Buuren

Diff between AGD versions 0.31 dated 2014-12-21 and 0.32 dated 2015-01-11

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Package timma updated to version 1.2.0 with previous version 1.1.0 dated 2015-01-05

Title: Target Inhibition Interaction using Maximization and Minimization Averaging
Description: Target Inhibition Interaction using Maximization/Minimization Averaging
Author: Liye He
Maintainer: Liye He

Diff between timma versions 1.1.0 dated 2015-01-05 and 1.2.0 dated 2015-01-11

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Package secrdesign updated to version 2.2.2 with previous version 2.2.1 dated 2014-11-26

Title: Sampling Design for Spatially Explicit Capture-Recapture
Description: Tools for designing spatially explicit capture--recapture studies of animal populations (primarily a simulation manager for package secr)
Author: Murray Efford
Maintainer: Murray Efford

Diff between secrdesign versions 2.2.1 dated 2014-11-26 and 2.2.2 dated 2015-01-11

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Package secr updated to version 2.9.3 with previous version 2.9.2 dated 2014-11-26

Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford

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New package patchSynctex with initial version 0.1-0
Package: patchSynctex
Type: Package
Title: Communication between Editor and Viewer for Literate Programs
Version: 0.1-0
Date: 2015-01-10
Authors@R: c(person(given="Jan", family="Gleixner", email="jan.gleixner@gmail.com", role="aut"), person(given="Emmanuel", family="Charpentier", email="emm.charpentier@free.fr", role=c("aut", "cre")))
Depends: tools, stringr
Enhances: knitr, utils
Description: This utility eases the debugging of literate documents (noweb files) by patching the synchronization information (the .synctex(.gz) file) produced by pdflatex with concordance information produced by Sweave or knitr and Sweave or knitr ; this allows for bilateral communication between a text editor (visualizing the noweb source) and a viewer (visualizing the resultant PDF), thus bypassing the intermediate TeX file.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-01-11 08:58:22 UTC; charpent
Author: Jan Gleixner [aut], Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier
Repository: CRAN
Date/Publication: 2015-01-11 16:53:11

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Package leiv updated to version 2.0-7 with previous version 2.0-6 dated 2014-03-04

Title: Bivariate Linear Errors-In-Variables Estimation
Description: Estimate the slope and intercept of a bivariate linear relationship by calculating a posterior density that is invariant to interchange and scaling of the coordinates.
Author: David Leonard [aut, cre]
Maintainer: David Leonard

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Package fscaret updated to version 0.9 with previous version 0.8.6.3 dated 2014-10-06

Title: Automated caret feature selection
Description: Automated feature selection using variety of models provided by caret package
Author: Jakub Szlek , acknowledgments to Aleksander Mendyk, contributions from stackoverflow and r-help@r-project.org mailing list community. Acknowledgments: This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012.
Maintainer: Jakub Szlek

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Package soilphysics updated to version 2.0 with previous version 1.2 dated 2014-10-14

Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva

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Package regexr updated to version 1.0.2 with previous version 0.0.2 dated 2014-12-22

Title: Readable Regular Expressions
Description: An R framework for constructing and managing human readable regular expressions. It aims to provide tools that enable the user to write regular expressions in a way that is similar to the ways R code is written. The tools allow the user to (1) write in smaller, modular, named, sub-expressions, (2) write top to bottom, rather than a single string (3) comment individual chunks, (4) indent expressions to clearly present regular expression groups, (5) add vertical line spaces and R comments (i.e., #), and (6) test the validity of the concatenated expression and the modular sub-expressions.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker

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Package quantreg updated to version 5.11 with previous version 5.08 dated 2015-01-09

Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also included.
Author: Roger Koenker with contributions from Stephen Portnoy, Pin Ng, Achim Zeileis, Philip Grosjean and Brian Ripley
Maintainer: Roger Koenker

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Package metaplus updated to version 0.7-0 with previous version 0.6-1 dated 2014-10-14

Title: Robust Meta-analysis and Meta-regression
Description: Performs meta-analysis using standard and robust methods with confidence intervals from profile likelihood.
Author: Ken Beath
Maintainer: Ken Beath

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 R/profilenorm.metaplus.R              |  195 +++++++++++++++++-----------------
 R/profilet.metaplus.R                 |  114 +++++++++++--------
 R/profilet.profile.R                  |   23 +---
 R/test.outliers.profilemix.metaplus.R |   83 +++++++-------
 R/test.outliers.profilet.metaplus.R   |   85 +++++++-------
 inst/NEWS                             |    6 +
 man/metaplus.Rd                       |    1 
 21 files changed, 381 insertions(+), 355 deletions(-)

More information about metaplus at CRAN
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Package hergm updated to version 2.1-1 with previous version 2.1-0 dated 2015-01-04

Title: Hierarchical Exponential-Family Random Graph Models with Local Dependence
Description: Estimate and simulate hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger [aut, cre], Mark S. Handcock [ctb], Pamela Luna [ctb]
Maintainer: Michael Schweinberger

Diff between hergm versions 2.1-0 dated 2015-01-04 and 2.1-1 dated 2015-01-11

 DESCRIPTION          |    8 ++++----
 MD5                  |    6 +++---
 R/hergm.preprocess.R |   12 ++++--------
 inst/CITATION        |   25 +++++++++----------------
 4 files changed, 20 insertions(+), 31 deletions(-)

More information about hergm at CRAN
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