Title: Recursive Partitioning Based on Psychometric Models
Diff between psychotree versions 0.14-0 dated 2014-08-28 and 0.15-0 dated 2015-01-19
Description: Recursive partitioning based on psychometric models,
employing the general MOB algorithm (from package partykit) to obtain
Bradley-Terry trees, Rasch trees, rating scale and partial credit trees, and
MPT trees.
Author: Achim Zeileis [aut, cre],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Abou El-Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 17 ++--
MD5 | 33 ++++----
NAMESPACE | 21 +----
NEWS | 8 ++
R/bttree.R | 6 -
R/graphics.R | 125 +++++++++++++++++++++++++++++++--
R/mpttree.R |only
build/vignette.rds |binary
data/CEMSChoice.rda |binary
data/DIFSim.rda |binary
data/EuropeanValuesStudy.rda |binary
data/SPISA.rda |binary
data/Topmodel2007.rda |binary
inst/doc/raschtree.pdf |binary
man/bttree.Rd | 5 +
man/mpttree.Rd |only
man/node_mptplot.Rd |only
tests/Examples/psychotree-Ex.Rout.save | 100 ++++++++++++++++++++------
vignettes/raschtree.Rout.save | 10 --
19 files changed, 247 insertions(+), 78 deletions(-)
Title: Infrastructure for Psychometric Modeling
Diff between psychotools versions 0.3-0 dated 2014-08-28 and 0.4-0 dated 2015-01-19
Description: Infrastructure for psychometric modeling such as data classes
(for item response data and paired comparisons), basic model fitting
functions (for Bradley-Terry, Rasch, partial credit, rating scale,
multinomial processing tree models), extractor functions for different types
of parameters (item, person, threshold, discrimination), unified inference
and visualizations, and various datasets for illustration. Intended as a
common lightweight and efficient toolbox for psychometric modeling and a
common building block for fitting psychometric mixture models in package
"psychomix" and psychometric tree models in package "psychotree".
Author: Achim Zeileis [aut, cre],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Abou El-Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 31 +++---
MD5 | 46 +++++----
NAMESPACE | 23 ++--
NEWS | 16 +++
R/itemresp.R | 50 ++++++++++
R/mptmodel.R |only
R/pcmodel.R | 2
R/raschmodel.R | 6 -
data/FirstNames.rda |binary
data/GermanParties2009.rda |binary
data/MemoryDeficits.rda |binary
data/SoundQuality.rda |binary
data/SourceMonitoring.rda |binary
data/StereotypeThreat.rda |binary
data/VerbalAggression.rda |binary
data/YouthGratitude.rda |binary
man/MemoryDeficits.Rd | 6 -
man/SourceMonitoring.Rd | 26 +++--
man/btmodel.Rd | 13 +-
man/itemresp.Rd | 40 ++++----
man/mptmodel.Rd |only
man/mscale.Rd | 14 ++
man/pcmodel.Rd | 4
man/summary.itemresp.Rd | 16 ++-
tests/Examples/psychotools-Ex.Rout.save | 150 ++++++++++++++++++++++++--------
25 files changed, 311 insertions(+), 132 deletions(-)
Title: Extended Model Formulas
Diff between Formula versions 1.1-2 dated 2014-07-13 and 1.2-0 dated 2015-01-19
Description: Infrastructure for extended formulas with multiple parts on the
right-hand side and/or multiple responses on the left-hand side.
Author: Achim Zeileis [aut, cre],
Yves Croissant [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 8 -
MD5 | 14 +--
NEWS | 6 +
R/Formula.R | 152 ++++++++++++++++++++----------------
build/vignette.rds |binary
inst/doc/Formula.pdf |binary
man/model.frame.Formula.Rd | 24 ++++-
tests/Examples/Formula-Ex.Rout.save | 28 +++++-
8 files changed, 145 insertions(+), 87 deletions(-)
Title: Maximally Selected Rank Statistics
Diff between maxstat versions 0.7-20 dated 2014-02-07 and 0.7-21 dated 2015-01-19
Description: Maximally selected rank statistics with
several p-value approximations.
Author: Torsten Hothorn
Maintainer: Torsten Hothorn
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/maxstat.R | 14 +++++++++-----
R/maxstat.test.R | 4 ++--
build/vignette.rds |binary
data/treepipit.rda |binary
inst/NEWS | 4 ++++
inst/doc/maxstat.pdf |binary
8 files changed, 26 insertions(+), 18 deletions(-)
Title: Bayesian Model Averaging with INLA
Diff between INLABMA versions 0.1-5 dated 2014-07-09 and 0.1-6 dated 2015-01-19
Description: Spatial Econometrics models using Bayesian Model Averaging
on models fitted with INLA. The INLA package can be obtained from
http://www.r-inla.org . We recommend the testing version, which can be
downloaded by running:
source("http://www.math.ntnu.no/inla/givemeINLA-testing.R")
Author: Virgilio Gómez-Rubio
Maintainer: Virgilio Gómez-Rubio
DESCRIPTION | 15 ++++++++-------
MD5 | 23 ++++++++++++-----------
NAMESPACE | 2 ++
R/BMArho.R | 5 ++++-
R/SE-utils.R | 48 ++++++++++++++++++++++++------------------------
R/leroux.R | 4 ++--
inst |only
man/BMA2.Rd | 11 +++++++++++
man/BMArho.Rd | 12 ++++++++++++
man/leroux.Rd | 18 +++++++++++++++---
man/rescalemarg.Rd | 4 +++-
man/sem.Rd | 31 +++++++++++++++++++++++--------
man/trIrhoWinv.Rd | 2 +-
13 files changed, 117 insertions(+), 58 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Diff between gstat versions 1.0-20 dated 2015-01-08 and 1.0-21 dated 2015-01-19
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre],
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma
DESCRIPTION | 12 ++++++------
MD5 | 16 ++++++++--------
R/krige0.R | 15 +++++++++------
R/variogramST.R | 11 +++++++++--
inst/doc/gstat.pdf |binary
inst/doc/prs.pdf |binary
inst/doc/st.pdf |binary
man/krige.Rd | 9 +++++++++
man/krigeST.Rd | 3 ++-
9 files changed, 43 insertions(+), 23 deletions(-)
Title: Numerical Calibration of Proxy-Climate Relationships
Diff between treeclim versions 1.0.9 dated 2015-01-12 and 1.0.10 dated 2015-01-19
Description: Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology
Author: Christian Zang [aut, cre, cph, trl],
Franco Biondi [ctb, cph]
Maintainer: Christian Zang
DESCRIPTION | 8
MD5 | 28 +-
R/dcc.R | 688 ++++++++++++++++++++++++++---------------------------
R/generics.R | 86 +++---
R/gershunov.R | 354 +++++++++++++--------------
R/init_boot_data.R | 5
R/ptest.R | 4
R/seascorr.R | 559 +++++++++++++++++++++----------------------
R/skills.R | 546 ++++++++++++++++++++----------------------
inst/Changelog | 7
man/dcc.Rd | 2
man/g_test.Rd | 130 ++++------
man/seascorr.Rd | 280 ++++++++++-----------
man/skills.Rd | 2
src/pcor.cpp | 16 +
15 files changed, 1370 insertions(+), 1345 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Diff between mdatools versions 0.5.3 dated 2014-04-26 and 0.6.0 dated 2015-01-19
Description: Package implements projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics.
Author: Sergey Kucheryavskiy
Maintainer: Sergey Kucheryavskiy
DESCRIPTION | 12
MD5 | 429 ++++++++++++++++-----------------
NEWS | 7
R/crossval.R | 71 ++++-
R/defaults.R | 29 ++
R/ldecomp.R | 3
R/mdaplots.R | 30 +-
R/pca.R | 39 +--
R/pls.R | 109 +++++---
R/prep.R | 3
R/randtest.R |only
R/simca.R | 61 ++--
README.md | 8
man/as.matrix.classres.Rd | 18 -
man/as.matrix.ldecomp.Rd | 10
man/as.matrix.plsdares.Rd | 16 -
man/as.matrix.plsres.Rd | 15 -
man/as.matrix.regcoeffs.Rd | 16 -
man/as.matrix.regres.Rd | 16 -
man/bars.Rd | 10
man/classify.plsda.Rd | 15 -
man/crossval.Rd | 16 -
man/erfinv.Rd | 4
man/errorbars.Rd | 14 -
man/getCalibrationData.Rd | 9
man/getCalibrationData.pca.Rd | 6
man/getCalibrationData.simcam.Rd | 6
man/getClassificationPerformance.Rd | 36 +-
man/getMainTitle.Rd | 9
man/getSelectedComponents.Rd | 15 -
man/getSelectedComponents.classres.Rd | 14 -
man/getSelectivityRatio.Rd | 9
man/getSelectivityRatio.pls.Rd | 20 -
man/getVIPScores.Rd | 9
man/getVIPScores.pls.Rd | 16 -
man/ldecomp.Rd | 56 +---
man/ldecomp.getDistances.Rd | 26 --
man/ldecomp.getResLimits.Rd | 13 -
man/ldecomp.getVariances.Rd | 11
man/mdaplot.areColors.Rd | 5
man/mdaplot.formatValues.Rd | 16 -
man/mdaplot.getAxesLim.Rd | 42 +--
man/mdaplot.getColors.Rd | 15 -
man/mdaplot.plotAxes.Rd | 18 -
man/mdaplot.showColorbar.Rd | 10
man/mdaplot.showGrid.Rd | 4
man/mdaplot.showLabels.Rd | 21 -
man/mdaplot.showLegend.Rd | 20 -
man/mdaplot.showLines.Rd | 14 -
man/mdaplot.showRegressionLine.Rd | 12
man/mdaplotg.Rd | 2
man/mdatools.Rd | 1
man/pca.cal.Rd | 16 -
man/pca.crossval.Rd | 16 -
man/pca.nipals.Rd | 17 -
man/pca.svd.Rd | 12
man/pinv.Rd | 5
man/plot.classres.Rd | 13 -
man/plot.pca.Rd | 18 -
man/plot.pcares.Rd | 15 -
man/plot.pls.Rd | 21 -
man/plot.plsda.Rd | 21 -
man/plot.plsdares.Rd | 21 -
man/plot.plsres.Rd | 15 -
man/plot.randtest.Rd |only
man/plot.regcoeffs.Rd | 32 +-
man/plot.regres.Rd | 14 -
man/plot.simca.Rd | 9
man/plot.simcam.Rd | 9
man/plot.simcamres.Rd | 7
man/plotCooman.Rd | 6
man/plotCooman.simcam.Rd | 11
man/plotCooman.simcamres.Rd | 24 -
man/plotCorr.Rd |only
man/plotCorr.randtest.Rd |only
man/plotCumVariance.Rd | 9
man/plotCumVariance.ldecomp.Rd | 21 -
man/plotCumVariance.pca.Rd | 16 -
man/plotDiscriminationPower.Rd | 9
man/plotDiscriminationPower.simcam.Rd | 22 -
man/plotHist.Rd |only
man/plotHist.randtest.Rd |only
man/plotLoadings.Rd | 9
man/plotLoadings.pca.Rd | 27 --
man/plotMisclassified.Rd | 9
man/plotMisclassified.classmodel.Rd | 17 -
man/plotMisclassified.classres.Rd | 19 -
man/plotModelDistance.Rd | 9
man/plotModelDistance.simcam.Rd | 24 -
man/plotModellingPower.Rd | 9
man/plotModellingPower.simca.Rd | 17 -
man/plotModellingPower.simcam.Rd | 16 -
man/plotPerformance.Rd | 9
man/plotPerformance.classmodel.Rd | 31 +-
man/plotPerformance.classres.Rd | 36 +-
man/plotPredictions.Rd | 9
man/plotPredictions.classmodel.Rd | 30 --
man/plotPredictions.classres.Rd | 37 +-
man/plotPredictions.pls.Rd | 39 +--
man/plotPredictions.plsres.Rd | 21 -
man/plotPredictions.regres.Rd | 33 +-
man/plotRMSE.Rd | 9
man/plotRMSE.pls.Rd | 27 --
man/plotRMSE.plsres.Rd | 12
man/plotRMSE.regres.Rd | 22 -
man/plotRegcoeffs.Rd | 9
man/plotRegcoeffs.pls.Rd | 20 -
man/plotResiduals.Rd | 9
man/plotResiduals.ldecomp.Rd | 22 -
man/plotResiduals.pca.Rd | 28 --
man/plotResiduals.simcam.Rd | 8
man/plotResiduals.simcamres.Rd | 23 -
man/plotResiduals.simcares.Rd | 24 -
man/plotScores.Rd | 6
man/plotScores.ldecomp.Rd | 18 -
man/plotScores.pca.Rd | 27 --
man/plotSelectivityRatio.Rd | 9
man/plotSelectivityRatio.pls.Rd | 28 +-
man/plotSensitivity.Rd | 9
man/plotSensitivity.classmodel.Rd | 17 -
man/plotSensitivity.classres.Rd | 18 -
man/plotSpecificity.Rd | 9
man/plotSpecificity.classmodel.Rd | 17 -
man/plotSpecificity.classres.Rd | 18 -
man/plotVIPScores.Rd | 9
man/plotVIPScores.pls.Rd | 25 -
man/plotVariance.Rd | 9
man/plotVariance.ldecomp.Rd | 21 -
man/plotVariance.pca.Rd | 27 --
man/plotVariance.pls.Rd | 27 --
man/plotXCumVariance.Rd | 9
man/plotXCumVariance.pls.Rd | 21 -
man/plotXCumVariance.plsres.Rd | 12
man/plotXLoadings.Rd | 9
man/plotXLoadings.pls.Rd | 21 -
man/plotXResiduals.Rd | 9
man/plotXResiduals.pls.Rd | 25 -
man/plotXResiduals.plsres.Rd | 15 -
man/plotXScores.Rd | 9
man/plotXScores.pls.Rd | 25 -
man/plotXScores.plsres.Rd | 15 -
man/plotXVariance.Rd | 9
man/plotXVariance.pls.Rd | 21 -
man/plotXVariance.plsres.Rd | 12
man/plotXYLoadings.Rd | 9
man/plotXYLoadings.pls.Rd | 22 -
man/plotXYScores.Rd | 9
man/plotXYScores.pls.Rd | 27 --
man/plotXYScores.plsres.Rd | 17 -
man/plotYCumVariance.Rd | 9
man/plotYCumVariance.pls.Rd | 21 -
man/plotYCumVariance.plsres.Rd | 12
man/plotYResiduals.Rd | 9
man/plotYResiduals.pls.Rd | 29 +-
man/plotYResiduals.regres.Rd | 29 +-
man/plotYVariance.Rd | 9
man/plotYVariance.pls.Rd | 21 -
man/plotYVariance.plsres.Rd | 12
man/pls.Rd | 2
man/pls.cal.Rd | 24 -
man/pls.calculateSelectivityRatio.Rd | 17 -
man/pls.calculateVIPScores.Rd | 11
man/pls.crossval.Rd | 22 -
man/pls.simpls.Rd | 21 -
man/plsda.crossval.Rd | 21 -
man/plsda.getReferenceValues.Rd | 6
man/predict.pca.Rd | 11
man/predict.pls.Rd | 14 -
man/predict.plsda.Rd | 14 -
man/predict.simca.Rd | 15 -
man/predict.simcam.Rd | 18 -
man/prep.autoscale.Rd | 13 -
man/prep.msc.Rd | 17 -
man/prep.savgol.Rd | 11
man/prep.snv.Rd | 12
man/print.classres.Rd | 14 -
man/print.ldecomp.Rd | 13 -
man/print.pca.Rd | 6
man/print.pcares.Rd | 6
man/print.pls.Rd | 6
man/print.plsda.Rd | 6
man/print.plsdares.Rd | 7
man/print.plsres.Rd | 6
man/print.randtest.Rd |only
man/print.regcoeffs.Rd | 18 -
man/print.regres.Rd | 7
man/print.simca.Rd | 6
man/print.simcam.Rd | 6
man/print.simcamres.Rd | 7
man/print.simcares.Rd | 6
man/randtest.Rd |only
man/regcoeffs.Rd | 32 +-
man/regcoeffs.getStat.Rd | 19 -
man/regres.Rd | 36 +-
man/regres.bias.Rd | 9
man/regres.r2.Rd | 9
man/regres.rmse.Rd | 9
man/regres.slope.Rd | 9
man/selectCompNum.Rd | 9
man/selectCompNum.pca.Rd | 9
man/selectCompNum.pls.Rd | 9
man/showPredictions.Rd | 9
man/showPredictions.classres.Rd | 19 -
man/simca.classify.Rd | 13 -
man/simca.crossval.Rd | 18 -
man/simcam.getPerformanceStatistics.Rd | 8
man/summary.classres.Rd | 20 -
man/summary.ldecomp.Rd | 12
man/summary.pca.Rd | 9
man/summary.pcares.Rd | 10
man/summary.pls.Rd | 12
man/summary.plsda.Rd | 13 -
man/summary.plsdares.Rd | 10
man/summary.plsres.Rd | 13 -
man/summary.randtest.Rd |only
man/summary.regres.Rd | 12
man/summary.simca.Rd | 7
man/summary.simcam.Rd | 7
man/summary.simcamres.Rd | 7
man/summary.simcares.Rd | 7
220 files changed, 1954 insertions(+), 1885 deletions(-)
Title: Spatio-Temporal Bayesian Modelling Using R
Diff between spTimer versions 1.0-3 dated 2014-10-02 and 2.0-0 dated 2015-01-19
Description: The package is able to fit, spatially predict and temporally forecast large amounts of space-time data using [1] Bayesian Gaussian Process (GP) Models, [2] Bayesian Auto-Regressive (AR) Models, and [3] Bayesian Gaussian Predictive Processes (GPP) based AR Models for big-n problem.
Author: K. Shuvo Bakar & Sujit K. Sahu
Maintainer: Shuvo Bakar
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
inst/CITATION | 23 +++++++++++------------
inst/ChangeLog | 40 +++-------------------------------------
man/spT.Gibbs.Rd | 8 +++++---
man/spTimer-package.Rd | 9 +--------
src/common.c | 27 ++++++++++++++-------------
7 files changed, 44 insertions(+), 83 deletions(-)
Title: A collection of methods for left-censored missing data
imputation
Diff between imputeLCMD versions 1.0 dated 2014-07-12 and 2.0 dated 2015-01-19
Description: The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
Author: Cosmin Lazar
Maintainer: Cosmin Lazar
imputeLCMD-1.0/imputeLCMD/man/imputeLCMD-package.Rd |only
imputeLCMD-2.0/imputeLCMD/DESCRIPTION | 10 +++++-----
imputeLCMD-2.0/imputeLCMD/MD5 | 9 +++++++--
imputeLCMD-2.0/imputeLCMD/R/imputeMAR-MNAR.R |only
imputeLCMD-2.0/imputeLCMD/R/imputeMAR.R |only
imputeLCMD-2.0/imputeLCMD/R/modelSelector.R |only
imputeLCMD-2.0/imputeLCMD/man/impute.MAR.MNAR.Rd |only
imputeLCMD-2.0/imputeLCMD/man/impute.MAR.Rd |only
imputeLCMD-2.0/imputeLCMD/man/model.Selector.Rd |only
9 files changed, 12 insertions(+), 7 deletions(-)