Title: Print Function Signatures
Diff between sig versions 0.0-4 dated 2013-07-11 and 0.0-5 dated 2015-01-21
Description: Print function signatures and find overly complicated code.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton
DESCRIPTION | 21 +++++++++-----
MD5 | 46 ++++++++++++++++----------------
NAMESPACE | 2 +
NEWS | 1
R/indexing.R | 2 -
R/sig.R | 11 +++++--
man/Extract.siglist.Rd | 28 ++++++++++---------
man/as.list.sig.Rd | 17 ++++++------
man/as.sig.Rd | 22 ++++++++-------
man/as.siglist.Rd | 20 +++++++-------
man/backquote.Rd | 15 +++++-----
man/exponential_cut.Rd | 16 ++++++-----
man/fix_fn_names.Rd | 16 ++++++-----
man/is.sig.Rd | 12 ++++----
man/is.siglist.Rd | 14 +++++----
man/list_sigs.Rd | 26 +++++++++---------
man/pkg2env.Rd | 14 +++++----
man/print.sig.Rd | 31 ++++++++++++----------
man/print.siglist.Rd | 23 +++++++---------
man/print_engine.Rd | 18 ++++++------
man/sig.Rd | 34 +++++++++++++-----------
man/sig_report.Rd | 66 +++++++++++++++++++++++------------------------
man/source_to_new_env.Rd | 14 +++++----
man/write_sigs.Rd | 42 ++++++++++++++---------------
24 files changed, 275 insertions(+), 236 deletions(-)
Title: Search VertNet, a Database of Vertebrate Specimen Records
Diff between rvertnet versions 0.0-5 dated 2012-11-23 and 0.2.2 dated 2015-01-21
Description: Retrieve, map and summarize data from the VertNet.org archives.
Functions allow searching by many parameters, including taxonomic names,
places, dates. In addition, there is an interface for conducting spatially
delimited searches, and another for requesting large datasets via email.
Author: Scott Chamberlain [aut, cre], Chris Ray [aut], Vijay Barve [aut]
Maintainer: Scott Chamberlain
rvertnet-0.0-5/rvertnet/R/rvertnet.R |only
rvertnet-0.0-5/rvertnet/R/vertavailablemaps.R |only
rvertnet-0.0-5/rvertnet/R/vertlocations.R |only
rvertnet-0.0-5/rvertnet/R/vertoccurrence.R |only
rvertnet-0.0-5/rvertnet/R/vertoccurrencecount.R |only
rvertnet-0.0-5/rvertnet/R/vertproviders.R |only
rvertnet-0.0-5/rvertnet/R/verttaxa.R |only
rvertnet-0.0-5/rvertnet/data |only
rvertnet-0.0-5/rvertnet/inst/vertnetorg_ropensci2.png |only
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rvertnet-0.0-5/rvertnet/man/dcdatatypes.Rd |only
rvertnet-0.0-5/rvertnet/man/dcnames.Rd |only
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rvertnet-0.0-5/rvertnet/man/vertlocations.Rd |only
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rvertnet-0.0-5/rvertnet/man/vertoccurrencecount.Rd |only
rvertnet-0.0-5/rvertnet/man/vertproviders.Rd |only
rvertnet-0.0-5/rvertnet/man/verttaxa.Rd |only
rvertnet-0.2.2/rvertnet/DESCRIPTION | 34 +--
rvertnet-0.2.2/rvertnet/LICENSE |only
rvertnet-0.2.2/rvertnet/MD5 | 68 +++---
rvertnet-0.2.2/rvertnet/NAMESPACE | 9
rvertnet-0.2.2/rvertnet/NEWS | 20 +
rvertnet-0.2.2/rvertnet/R/bigsearch.R |only
rvertnet-0.2.2/rvertnet/R/defunct.R |only
rvertnet-0.2.2/rvertnet/R/globals.R |only
rvertnet-0.2.2/rvertnet/R/rvertnet-package.R |only
rvertnet-0.2.2/rvertnet/R/searchbyterm.R |only
rvertnet-0.2.2/rvertnet/R/spatialsearch.R |only
rvertnet-0.2.2/rvertnet/R/vertmap.R | 119 +++++++---
rvertnet-0.2.2/rvertnet/R/vertsearch.R | 57 +++--
rvertnet-0.2.2/rvertnet/R/vertsummary.R |only
rvertnet-0.2.2/rvertnet/R/yyy.R |only
rvertnet-0.2.2/rvertnet/R/zzz.R | 112 +++++++---
rvertnet-0.2.2/rvertnet/README.md | 144 ++++++++++---
rvertnet-0.2.2/rvertnet/build |only
rvertnet-0.2.2/rvertnet/inst/doc |only
rvertnet-0.2.2/rvertnet/inst/vign |only
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rvertnet-0.2.2/rvertnet/man/rvertnet-defunct.Rd |only
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rvertnet-0.2.2/rvertnet/man/vertavailablemaps-defunct.Rd |only
rvertnet-0.2.2/rvertnet/man/vertlocations-defunct.Rd |only
rvertnet-0.2.2/rvertnet/man/vertmap.Rd | 64 ++++-
rvertnet-0.2.2/rvertnet/man/vertoccurrence-defunct.Rd |only
rvertnet-0.2.2/rvertnet/man/vertoccurrencecount-defunct.Rd |only
rvertnet-0.2.2/rvertnet/man/vertproviders-defunct.Rd |only
rvertnet-0.2.2/rvertnet/man/vertsearch.Rd | 54 +++-
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rvertnet-0.2.2/rvertnet/man/verttaxa-defunct.Rd |only
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54 files changed, 504 insertions(+), 177 deletions(-)
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Diff between mvSLOUCH versions 1.1.4 dated 2014-11-02 and 1.1.5 dated 2015-01-21
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.
Author: Krzysztof Bartoszek
Maintainer: Krzysztof Bartoszek
DESCRIPTION | 10 +++++-----
MD5 | 28 ++++++++++++++--------------
R/estimBM.R | 2 +-
R/simulVasicekprocphyl.R | 7 ++++---
man/BrownianMotionModel.Rd | 2 +-
man/SummarizeBM.Rd | 2 +-
man/SummarizeMVSLOUCH.Rd | 4 ++--
man/SummarizeOUCH.Rd | 2 +-
man/fitch.mvsl.Rd | 2 +-
man/mvSLOUCH-package.Rd | 2 +-
man/mvslouchModel.Rd | 4 ++--
man/ouchModel.Rd | 2 +-
man/simulBMProcPhylTree.Rd | 2 +-
man/simulMVSLOUCHProcPhylTree.Rd | 2 +-
man/simulOUCHProcPhylTree.Rd | 2 +-
15 files changed, 37 insertions(+), 36 deletions(-)
Title: Linked Micromap Plots for U. S. States
Diff between micromapST versions 1.0.3 dated 2014-03-09 and 1.0.5 dated 2015-01-21
Description: This package provides the user with the ability to quickly create Linked
Micromap plots of the 50 U.S. states and District of Columbia (51 areas).
Linked Micromap plots are visualizations of geo-referenced data that link statistical
graphics to an organized series of small maps.
The Help description contains examples of how to use the micromapST function.
This package contains the US and State boundary files and U. S. FIPS code to State conversion tables
used by the micromapST function and several data sets used in the micromapST examples.
Copyrighted 2013, 2014 and 2015 by Carr, Pearson and Pickle.
Author: Dan Carr
Maintainer: Jim Pearson
DESCRIPTION | 22 -
MD5 | 28 -
NEWS | 27 +
R/micromapST.r | 788 +++++++++++++++++++++++++---------------------
R/panelFunctions.r | 18 -
build |only
data/segBarData.rda |only
inst/CITATION | 35 +-
inst/doc |only
man/TSdata.Rd | 28 -
man/micromapST-package.Rd | 20 -
man/micromapST.Rd | 226 ++++++-------
man/micromapSTDefaults.Rd | 61 +--
man/panelDesc.Rd | 127 +++----
man/segBarData.Rd |only
man/wmlung5070US.Rd | 2
vignettes |only
17 files changed, 764 insertions(+), 618 deletions(-)
Title: R Interface to Google Charts
Diff between googleVis versions 0.5.7 dated 2014-12-20 and 0.5.8 dated 2015-01-21
Description: R interface to Google Charts API, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with Internet connection is required and for some
charts a Flash player. The data remains local and is not
uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb]
Maintainer: Markus Gesmann
DESCRIPTION | 14
MD5 | 32 -
NEWS | 6
R/gvisMethods.R | 10
README.md | 2
build/googleVis.pdf |binary
build/vignette.rds |binary
inst/doc/Using_Roles_via_googleVis.html | 220 +++----
inst/doc/Using_Trendlines_with_googleVis.html | 80 +-
inst/doc/Using_googleVis_with_knitr.html | 76 +-
inst/doc/googleVis.Rnw | 2
inst/doc/googleVis.pdf |binary
inst/doc/googleVis_examples.Rmd | 10
inst/doc/googleVis_examples.html | 740 +++++++++++++-------------
vignettes/googleVis.Rnw | 2
vignettes/googleVis.bib | 2
vignettes/googleVis_examples.Rmd | 10
17 files changed, 609 insertions(+), 597 deletions(-)
Title: Extreme Value Analysis
Diff between extRemes versions 2.0-4 dated 2014-12-17 and 2.0-5 dated 2015-01-21
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland
DESCRIPTION | 6 +--
MD5 | 16 ++++----
R/abba.R | 2 -
R/fitfuns.R | 107 ++++++++++++++++++++++++++++++++++++++++++++--------------
inst/CITATION | 11 +----
man/abba.Rd | 2 -
man/fevd.Rd | 6 ++-
man/hwmi.Rd | 8 ++++
src/Makevars | 2 -
9 files changed, 109 insertions(+), 51 deletions(-)
Title: Benchmark functions for the Special Session and Competition on
Real-Parameter Single Objective Optimization at CEC-2013
Diff between cec2013 versions 0.1-4 dated 2013-03-05 and 0.1-5 dated 2015-01-21
Description: This package provides R wrappers for the C implementation of 28 benchmark functions defined for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013. The focus of this package is to provide an open-source and multi-platform implementation of the CEC2013 benchmark functions, in order to make easier for researchers to test the performance of new optimization algorithms in a reproducible way. The original C code (Windows only) was provided by Jane Jing Liang, while GNU/Linux comments were made by Janez Brest. This package was gently authorised for publication on CRAN by Ponnuthurai Nagaratnam Suganthan. The official documentation is available at http://www.ntu.edu.sg/home/EPNSugan/index_files/CEC2013/CEC2013.htm. Bugs reports/comments/questions are very welcomed (in English, Spanish or Italian).
Author: Mauricio Zambrano-Bigiarini [aut, cre], Yasser Gonzalez-Fernandez [aut]
Maintainer: Mauricio Zambrano-Bigiarini
cec2013-0.1-4/cec2013/COPYING |only
cec2013-0.1-5/cec2013/DESCRIPTION | 32 +++++++-------------------------
cec2013-0.1-5/cec2013/MD5 | 13 ++++++-------
cec2013-0.1-5/cec2013/NEWS | 5 +++++
cec2013-0.1-5/cec2013/R/cec2013.R | 2 +-
cec2013-0.1-5/cec2013/inst/CITATION | 11 +++++------
cec2013-0.1-5/cec2013/man/cec2013.Rd | 6 +++---
cec2013-0.1-5/cec2013/src/cec2013.c | 2 +-
8 files changed, 28 insertions(+), 43 deletions(-)
Title: Phonetic-Coding For Portuguese
Diff between SoundexBR versions 1.0 dated 2014-12-22 and 1.1 dated 2015-01-21
Description: The SoundexBR package provides an algorithm for decoding names
into phonetic codes, as pronounced in Portuguese. The goal is for
homophones to be encoded to the same representation so that they can be
matched despite minor differences in spelling. The algorithm mainly encodes
consonants; a vowel will not be encoded unless it is the first letter. The
soundex code resultant consists of a four digits long string composed by
one letter followed by three numerical digits: the letter is the first
letter of the name, and the digits encode the remaining consonants.
Author: Daniel Marcelino
Maintainer: Daniel Marcelino
DESCRIPTION | 15 ++++++++---
MD5 | 19 +++++++-------
NAMESPACE | 19 ++++++--------
R/accent.R | 8 +++---
R/soundexBR.R | 52 ++++++++++++++++++++++++++++++++++++++-
R/utils.R | 1
README.md | 62 +++++++++++++++++++++++++++++++++++++++++++----
man/accent.Rd | 37 ++++++++++++++--------------
man/ptSound.Rd |only
man/soundexBR-package.Rd | 4 +--
man/soundexBR.Rd | 7 +++--
11 files changed, 168 insertions(+), 56 deletions(-)
Title: Tools for Designing and Weighting Survey Samples
Diff between PracTools versions 0.0-2 dated 2014-06-22 and 0.1 dated 2015-01-21
Description: PracTools contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example datasets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter
Maintainer: Richard Valliant
DESCRIPTION | 8 ++++----
MD5 | 48 +++++++++++++++++++++++++++++++-----------------
NAMESPACE | 9 +++++----
R/NRadjClass.R |only
R/deffH.R |only
R/deffK.R |only
R/deffS.R |only
R/nCont.R | 17 +++++++++--------
R/nContMoe.R |only
R/nPropMoe.R | 22 ++++++++++++----------
R/pclass.R |only
R/strAlloc.R | 18 +++++++++++++++++-
data/Domainy1y2.RData |binary
data/MDarea.pop.RData |binary
data/datalist | 1 +
data/hospital.RData |binary
data/labor.RData |binary
data/nhis.RData |binary
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man/strAlloc.Rd | 6 +++++-
32 files changed, 91 insertions(+), 52 deletions(-)
Title: Regression Models for Ordinal Data
Diff between ordinal versions 2014.12-22 dated 2014-12-23 and 2015.1-21 dated 2015-01-21
Description: Implementation of cumulative link (mixed) models also known
as ordered regression models, proportional odds models, proportional
hazards models for grouped survival times and ordered logit/probit/...
models. Estimation is via maximum likelihood and mixed models are fitted
with the Laplace approximation and adaptive Gauss-Hermite quadrature.
Multiple random effect terms are allowed and they may be nested, crossed or
partially nested/crossed. Restrictions of symmetry and equidistance can be
imposed on the thresholds (cut-points/intercepts). Standard model
methods are available (summary, anova, drop-methods, step,
confint, predict etc.) in addition to profile methods and slice
methods for visualizing the likelihood function and checking
convergence.
Author: Rune Haubo Bojesen Christensen [aut, cre]
Maintainer: Rune Haubo Bojesen Christensen
DESCRIPTION | 10
MD5 | 71 +++---
NAMESPACE | 4
NEWS | 3
R/clm.R | 484 +++++++++---------------------------------
R/clm.Thetamat.R | 11
R/clm.fit.R | 215 +++++++++++-------
R/clm.fitter.R | 20 +
R/clm.frames.R | 304 ++++++++++----------------
R/clm.methods.R | 18 +
R/clm.predict.R | 3
R/clm.profile.R | 10
R/clm.simple.R | 8
R/clm.start.R | 20 -
R/clmm.R | 2
R/control.R | 2
R/convergence.R | 6
R/drop.coef.R | 19 -
R/utils.R | 103 +++++---
R/warning_functions.R |only
inst/CITATION | 9
inst/doc/clm_intro.pdf |binary
inst/doc/clm_tutorial.pdf |binary
inst/doc/clmm2_tutorial.pdf |binary
man/clm.Rd | 2
man/clm.control.Rd | 9
man/clm.fit.Rd | 86 +++----
tests/clm.fit.R | 95 ++++----
tests/clm.formula.R | 11
tests/test-all.R |only
tests/test.clm.Theta.R | 15 +
tests/test.clm.model.matrix.R | 8
tests/test.clm.predict.R | 27 ++
tests/test0weights.R | 2
tests/testthat |only
35 files changed, 723 insertions(+), 854 deletions(-)
Title: Dual Empirical Likelihood Inference under Density Ratio Models
in the Presence of Multiple Samples
Diff between drmdel versions 1.3 dated 2014-04-09 and 1.3.1 dated 2015-01-21
Description: Dual empirical likelihood (DEL) inference under semiparametric density ratio models (DRM) in the presence of multiple samples, including population cumulative distribution function estimation, quantile estimation and comparison, density estimation, composite hypothesis testing for DRM parameters which encompasses testing for changes in population distribution functions as a special case, etc.
Author: Song Cai
Maintainer: Song Cai
ChangeLog | 8 +
DESCRIPTION | 16 +--
MD5 | 22 ++--
R/drmdel.R | 14 +-
man/cdfDRM.Rd | 48 +++++-----
man/densityDRM.Rd | 84 +++++++++--------
man/drmdel.Rd | 225 +++++++++++++++++++++++++-----------------------
man/meleCov.Rd | 10 +-
man/quantileCompWald.Rd | 125 ++++++++++++++------------
man/quantileDRM.Rd | 114 ++++++++++++------------
man/summaryDRM.Rd | 21 ++--
src/utilities.c | 3
12 files changed, 369 insertions(+), 321 deletions(-)
Title: Data sets, etc. for the text "Using R for Introductory
Statistics", second edition
Diff between UsingR versions 2.0-2 dated 2014-09-02 and 2.0-3 dated 2015-01-21
Description: A collection of data sets to accompany the
textbook "Using R for Introductory Statistics," second
edition.
Author: John Verzani
Maintainer: John Verzani
UsingR-2.0-2/UsingR/man/UsingR.Rd |only
UsingR-2.0-2/UsingR/man/sim.Rd |only
UsingR-2.0-3/UsingR/DESCRIPTION | 14 -
UsingR-2.0-3/UsingR/MD5 | 297 ++++++++++------------
UsingR-2.0-3/UsingR/NAMESPACE | 49 ++-
UsingR-2.0-3/UsingR/NEWS | 4
UsingR-2.0-3/UsingR/R/DOTplot.R | 32 ++
UsingR-2.0-3/UsingR/R/DensityPlot.R | 33 ++
UsingR-2.0-3/UsingR/R/QQplot.R | 17 +
UsingR-2.0-3/UsingR/R/Split.zoo.R | 8
UsingR-2.0-3/UsingR/R/aaa.R |only
UsingR-2.0-3/UsingR/R/datasets.R | 37 --
UsingR-2.0-3/UsingR/R/getAnswer.R | 27 +-
UsingR-2.0-3/UsingR/R/lorem.R | 3
UsingR-2.0-3/UsingR/R/scatter.with.hist.R | 11
UsingR-2.0-3/UsingR/R/simple.chutes.R | 7
UsingR-2.0-3/UsingR/R/simple.densityplot.R | 33 ++
UsingR-2.0-3/UsingR/R/simple.eda.R | 6
UsingR-2.0-3/UsingR/R/simple.eda.ts.R | 7
UsingR-2.0-3/UsingR/R/simple.fancy.stripchart.R | 6
UsingR-2.0-3/UsingR/R/simple.freqpoly.R | 9
UsingR-2.0-3/UsingR/R/simple.hist.and.boxplot.R | 9
UsingR-2.0-3/UsingR/R/simple.lag.R | 9
UsingR-2.0-3/UsingR/R/simple.lm.R | 11
UsingR-2.0-3/UsingR/R/simple.median.test.R | 6
UsingR-2.0-3/UsingR/R/simple.scatterplot.R | 8
UsingR-2.0-3/UsingR/R/simple.sim.R | 8
UsingR-2.0-3/UsingR/R/simple.violinplot.R | 36 ++
UsingR-2.0-3/UsingR/R/simple.z.test.R | 8
UsingR-2.0-3/UsingR/R/squareplot.R | 12
UsingR-2.0-3/UsingR/R/superbarplot.R | 9
UsingR-2.0-3/UsingR/R/utils.R | 22 -
UsingR-2.0-3/UsingR/R/violinplot.R | 33 ++
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UsingR-2.0-3/UsingR/data/Medicare.rda |binary
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UsingR-2.0-3/UsingR/data/age.universe.rda |binary
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UsingR-2.0-3/UsingR/data/last.tie.rda |binary
UsingR-2.0-3/UsingR/data/lawsuits.rda |binary
UsingR-2.0-3/UsingR/data/malpract.rda |binary
UsingR-2.0-3/UsingR/data/mandms.rda |binary
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UsingR-2.0-3/UsingR/data/maydow.rda |binary
UsingR-2.0-3/UsingR/data/movie_data_2011.rda |binary
UsingR-2.0-3/UsingR/data/movies.rda |binary
UsingR-2.0-3/UsingR/data/mw.ages.rda |binary
UsingR-2.0-3/UsingR/data/nba.draft.rda |binary
UsingR-2.0-3/UsingR/data/nisdc.rda |binary
UsingR-2.0-3/UsingR/data/normtemp.rda |binary
UsingR-2.0-3/UsingR/data/nym.2002.rda |binary
UsingR-2.0-3/UsingR/data/oral.lesion.rda |binary
UsingR-2.0-3/UsingR/data/ozonemonthly.rda |binary
UsingR-2.0-3/UsingR/data/paradise.rda |binary
UsingR-2.0-3/UsingR/data/pi2000.rda |binary
UsingR-2.0-3/UsingR/data/primes.rda |binary
UsingR-2.0-3/UsingR/data/puerto.rda |binary
UsingR-2.0-3/UsingR/data/rat.rda |binary
UsingR-2.0-3/UsingR/data/reaction.time.rda |binary
UsingR-2.0-3/UsingR/data/reddrum.rda |binary
UsingR-2.0-3/UsingR/data/salmon.rate.rda |binary
UsingR-2.0-3/UsingR/data/salmonharvest.rda |binary
UsingR-2.0-3/UsingR/data/samhda.rda |binary
UsingR-2.0-3/UsingR/data/scrabble.rda |binary
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UsingR-2.0-3/UsingR/data/sp500.excess.rda |binary
UsingR-2.0-3/UsingR/data/stud.recs.rda |binary
UsingR-2.0-3/UsingR/data/student.expenses.rda |binary
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UsingR-2.0-3/UsingR/data/tempsalinity.rda |binary
UsingR-2.0-3/UsingR/data/too.young.rda |binary
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UsingR-2.0-3/UsingR/data/u2.rda |binary
UsingR-2.0-3/UsingR/data/urchin.growth.rda |binary
UsingR-2.0-3/UsingR/data/vacation.rda |binary
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UsingR-2.0-3/UsingR/data/wellbeing.rda |binary
UsingR-2.0-3/UsingR/data/yellowfin.rda |binary
UsingR-2.0-3/UsingR/man/nisdc.Rd | 6
151 files changed, 553 insertions(+), 224 deletions(-)
Title: Thurstonian Models for Sensory Discrimination
Diff between sensR versions 1.4-4 dated 2014-12-23 and 1.4-5 dated 2015-01-21
Description: Provides methods for sensory discrimination methods;
duotrio, tetrad, triangle, 2-AFC, 3-AFC, A-not A, same-different,
2-AC and degree-of-difference.
This enables the calculation of d-primes, standard errors of
d-primes, sample size and power computations, and
comparisons of different d-primes. Methods for profile likelihood
confidence intervals and plotting are included.
Author: Rune Haubo Bojesen Christensen [aut, cre],
Per Bruun Brockhoff [aut]
Maintainer: Rune Haubo Bojesen Christensen
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 8 ++++++--
inst/CITATION | 9 ++++-----
inst/doc/methodology.pdf |binary
inst/doc/twoACexamples.pdf |binary
6 files changed, 19 insertions(+), 16 deletions(-)
Title: Semiparametric Sample Selection Modelling with Continuous or
Discrete Response
Diff between SemiParSampleSel versions 1.1-1 dated 2014-08-27 and 1.2 dated 2015-01-21
More information about SemiParSampleSel at CRAN
Description: Routine for fitting continuous or discrete response copula sample selection models with semiparametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice, Malgorzata Wojtys and Karol Wyszynski
Maintainer: Giampiero Marra
SemiParSampleSel-1.1-1/SemiParSampleSel/R/ghss1.r |only
SemiParSampleSel-1.1-1/SemiParSampleSel/R/ghss2.r |only
SemiParSampleSel-1.1-1/SemiParSampleSel/man/ghss1.Rd |only
SemiParSampleSel-1.1-1/SemiParSampleSel/man/ghss2.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/ChangeLog | 4
SemiParSampleSel-1.2/SemiParSampleSel/DESCRIPTION | 18
SemiParSampleSel-1.2/SemiParSampleSel/MD5 | 78 +-
SemiParSampleSel-1.2/SemiParSampleSel/NAMESPACE | 11
SemiParSampleSel-1.2/SemiParSampleSel/R/S.m.r | 55 +-
SemiParSampleSel-1.2/SemiParSampleSel/R/SemiParSampleSel.r | 275 +++++++---
SemiParSampleSel-1.2/SemiParSampleSel/R/bitsgHs.r | 65 +-
SemiParSampleSel-1.2/SemiParSampleSel/R/est.aver.r |only
SemiParSampleSel-1.2/SemiParSampleSel/R/fit.SemiParSampleSel.r | 85 +--
SemiParSampleSel-1.2/SemiParSampleSel/R/fit.SemiParSampleSel1.r |only
SemiParSampleSel-1.2/SemiParSampleSel/R/ghss.r | 211 +++----
SemiParSampleSel-1.2/SemiParSampleSel/R/ghssD.r |only
SemiParSampleSel-1.2/SemiParSampleSel/R/pen.r |only
SemiParSampleSel-1.2/SemiParSampleSel/R/print.SemiParSampleSel.r | 97 ++-
SemiParSampleSel-1.2/SemiParSampleSel/R/print.est.aver.r |only
SemiParSampleSel-1.2/SemiParSampleSel/R/print.summary.SemiParSampleSel.r | 90 ++-
SemiParSampleSel-1.2/SemiParSampleSel/R/ss.checks.r | 25
SemiParSampleSel-1.2/SemiParSampleSel/R/st.theta.star.R | 23
SemiParSampleSel-1.2/SemiParSampleSel/R/summary.SemiParSampleSel.r | 83 +--
SemiParSampleSel-1.2/SemiParSampleSel/R/theta.tau.r | 24
SemiParSampleSel-1.2/SemiParSampleSel/R/working.comp.r | 79 ++
SemiParSampleSel-1.2/SemiParSampleSel/R/working.comp1.r |only
SemiParSampleSel-1.2/SemiParSampleSel/inst/CITATION | 13
SemiParSampleSel-1.2/SemiParSampleSel/man/S.m.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/SemiParSampleSel-package.Rd | 25
SemiParSampleSel-1.2/SemiParSampleSel/man/SemiParSampleSel.Rd | 132 ++--
SemiParSampleSel-1.2/SemiParSampleSel/man/SemiParSampleSelObject.Rd | 31 -
SemiParSampleSel-1.2/SemiParSampleSel/man/VuongClarke.bcm.Rd | 27
SemiParSampleSel-1.2/SemiParSampleSel/man/bitsgHs.Rd | 3
SemiParSampleSel-1.2/SemiParSampleSel/man/est.aver.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/man/fit.SemiParSampleSel.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/fit.SemiParSampleSel1.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/man/ghss.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/ghssD.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/man/pen.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/man/predict.SemiParSampleSel.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/print.SemiParSampleSel.Rd | 4
SemiParSampleSel-1.2/SemiParSampleSel/man/print.est.aver.Rd |only
SemiParSampleSel-1.2/SemiParSampleSel/man/ss.checks.Rd | 3
SemiParSampleSel-1.2/SemiParSampleSel/man/st.theta.star.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/summary.SemiParSampleSel.Rd | 3
SemiParSampleSel-1.2/SemiParSampleSel/man/theta.tau.Rd | 2
SemiParSampleSel-1.2/SemiParSampleSel/man/working.comp.Rd | 4
SemiParSampleSel-1.2/SemiParSampleSel/man/working.comp1.Rd |only
48 files changed, 907 insertions(+), 573 deletions(-)
Permanent link
Title: Response Surface Analysis
Diff between RSA versions 0.9.3 dated 2014-06-27 and 0.9.6 dated 2015-01-21
Description: Advanced response surface analysis. The main function RSA computes
and compares several nested polynomial regression models (full polynomial,
shifted and rotated squared differences, rising ridge surfaces, basic
squared differences). The package provides plotting functions for 3d
wireframe surfaces, interactive 3d plots, and contour plots. Calculates
many surface parameters (a1 to a4, principal axes, stationary point,
eigenvalues) and provides standard, robust, or bootstrapped standard errors
and confidence intervals for them.
Author: Felix Schönbrodt
Maintainer: Felix Schönbrodt
DESCRIPTION | 17 +--
MD5 | 59 +++++------
NAMESPACE | 8 +
R/RSA.R | 271 +++++++++++++++++++++++++++++++++++----------------
R/RSA.ST.R | 51 ++++-----
R/aictab.R | 26 +++-
R/compare.R | 20 +--
R/confint.R | 4
R/demoRSA.R | 67 +++++++++++-
R/demoSRR.R |only
R/demoSRRR.R |only
R/getPar.R | 6 -
R/helpers.R | 74 ++++++-------
R/modeltree.R | 13 ++
R/outpro.R |only
R/plot.RSA.R | 257 +++++++++++++++++++++++++++++++++++-------------
R/print.RSA.R | 73 ++++++++++++-
inst/NEWS.Rd | 63 +++++++++++
man/RSA.Rd | 31 +++--
man/RSA.ST.Rd | 15 +-
man/aictab.Rd | 8 +
man/compare.Rd | 3
man/compare2.Rd | 5
man/confint.RSA.Rd | 13 +-
man/demoRSA.Rd | 35 ++++--
man/fitted.RSA.Rd | 3
man/getPar.Rd | 3
man/modeltree.Rd | 11 +-
man/motcon.Rd | 3
man/movieRSA.Rd | 3
man/plotRSA.Rd | 105 ++++++++++---------
man/residuals.RSA.Rd | 3
32 files changed, 863 insertions(+), 387 deletions(-)
Title: Overlays on Google map tiles in R
Diff between RgoogleMaps versions 1.2.0.6 dated 2014-04-30 and 1.2.0.7 dated 2015-01-21
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Author: Markus Loecher
Maintainer: Markus Loecher
DESCRIPTION | 10 ++--
MD5 | 79 +++++++++++++++++++--------------------
NAMESPACE | 4 +
R/AddAlpha.R | 11 +++--
R/ColorMap.R | 6 +-
R/DF2SpatialPointsDataFrame.R | 25 +++++++-----
R/GetMap.R | 7 ++-
R/PlotOnStaticMap.R | 4 +
R/PlotPolysOnStaticMap.R | 12 ++---
R/SpatialToPBS.R | 5 --
R/bubbleMap.R | 15 +++----
R/degreeAxis.R | 1
R/getGeoCode.R | 2
inst/CITATION |only
man/AddAlpha.Rd | 13 ++++--
man/ColorMap.Rd | 2
man/DF2SpatialPointsDataFrame.Rd | 25 +++++++-----
man/GetMap.OSM.Rd | 2
man/GetMap.Rd | 5 +-
man/GetMap.bbox.Rd | 2
man/IdentifyPoints.Rd | 2
man/LatLon2XY.Rd | 2
man/LatLon2XY.centered.Rd | 2
man/MapBackground.Rd | 2
man/MaxZoom.Rd | 2
man/PlotArrowsOnStaticMap.Rd | 2
man/PlotOnStaticMap.Rd | 6 +-
man/PlotPolysOnStaticMap.Rd | 8 +--
man/RGB2GRAY.Rd | 2
man/ReadMapTile.Rd | 2
man/RgoogleMaps-package.Rd | 12 ++---
man/SpatialToPBS.Rd | 2
man/TextOnStaticMap.Rd | 2
man/Tile2R.Rd | 2
man/XY2LatLon.Rd | 2
man/bubbleMap.Rd | 16 +++----
man/degreeAxis.Rd | 2
man/getGeoCode.Rd | 2
man/mypolygon.Rd | 2
man/qbbox.Rd | 2
man/updateusr.Rd | 2
41 files changed, 170 insertions(+), 136 deletions(-)
Title: MODIS Subsetting Tools
Diff between MODISTools versions 0.94.5 dated 2014-12-23 and 0.94.6 dated 2015-01-21
Description: Provides several functions for downloading, storing and processing
subsets of MODIS Land Processes data as a batch process.
Author: Sean Tuck, Helen Phillips
Maintainer: Sean Tuck
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
inst/CITATION | 2 +-
inst/doc/UsingMODISTools.pdf |binary
tests/Test.R | 40 +++++++++++++---------------------------
5 files changed, 22 insertions(+), 36 deletions(-)
Title: 2D and 3D Hive Plots for R
Diff between HiveR versions 0.2-27 dated 2014-06-02 and 0.2-28 dated 2015-01-21
Description: HiveR creates and plots 2D and 3D hive plots. Hive plots are a unique method of displaying networks of many types in which node properties are mapped to axes using meaningful properties rather than being arbitrarily positioned. The hive plot concept was invented by Martin Krzywinski at the Genome Science Center (www.hiveplot.net/). Keywords: networks, food webs, linnet, systems biology, bioinformatics.
Author: Bryan A. Hanson [aut, cre],
Vesna Memisevic [ctb],
Jonathan Chung [ctb]
Maintainer: Bryan A. Hanson
HiveR-0.2-27/HiveR/R/cart2sph.R |only
HiveR-0.2-27/HiveR/man/cart2sph.Rd |only
HiveR-0.2-28/HiveR/DESCRIPTION | 25 ++++++++--------
HiveR-0.2-28/HiveR/MD5 | 49 +++++++++++++++-----------------
HiveR-0.2-28/HiveR/NAMESPACE | 6 ++-
HiveR-0.2-28/HiveR/NEWS | 8 +++++
HiveR-0.2-28/HiveR/R/adj2HPD.R | 4 --
HiveR-0.2-28/HiveR/R/animateHive.R | 2 -
HiveR-0.2-28/HiveR/R/chkHPD.R | 3 -
HiveR-0.2-28/HiveR/R/dot2HPD.R | 2 -
HiveR-0.2-28/HiveR/R/drawHiveSpline.R | 2 -
HiveR-0.2-28/HiveR/R/edge2HPD.R | 2 -
HiveR-0.2-28/HiveR/R/manipAxis.R | 1
HiveR-0.2-28/HiveR/R/mineHPD.R | 2 -
HiveR-0.2-28/HiveR/R/plot3dHive.R | 2 -
HiveR-0.2-28/HiveR/R/plotHive.R | 6 +--
HiveR-0.2-28/HiveR/R/sph2cart.R | 2 -
HiveR-0.2-28/HiveR/R/sumHPD.R | 3 -
HiveR-0.2-28/HiveR/build/vignette.rds |binary
HiveR-0.2-28/HiveR/inst/CITATION | 5 +--
HiveR-0.2-28/HiveR/inst/doc/HiveR.R | 43 ++++++++++++++--------------
HiveR-0.2-28/HiveR/inst/doc/HiveR.Rnw | 5 +--
HiveR-0.2-28/HiveR/inst/doc/HiveR.pdf |binary
HiveR-0.2-28/HiveR/man/HiveR-package.Rd | 4 +-
HiveR-0.2-28/HiveR/man/plotHive.Rd | 1
HiveR-0.2-28/HiveR/man/sph2cart.Rd |only
HiveR-0.2-28/HiveR/vignettes/HiveR.Rnw | 5 +--
27 files changed, 95 insertions(+), 87 deletions(-)
Title: The Hilbert-Huang Transform: Tools and Methods
Diff between hht versions 2.1.1 dated 2014-10-28 and 2.1.2 dated 2015-01-21
Description: This package builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) and the complete ensemble empirical mode decomposition (CEEMD) methods to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum. To see the version history and download the bleeding-edge version (at your own risk!), see the project website at code.google.com below. See the other links for PDF files describing numerical and exact analytical methods for determining instantaneous frequency, some examples of signals processed with this package, and some examples of the ensemble empirical mode decomposition method.
Author: Daniel C. Bowman [aut, cre],
Jonathan M. Lees [ctb]
Maintainer: Daniel C. Bowman
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
NEWS | 3 +++
R/rendering_and_plotting.R | 2 +-
inst/CITATION | 22 ++++++++++------------
5 files changed, 21 insertions(+), 20 deletions(-)
Title: Cox regression with Firth's penalized likelihood
Diff between coxphf versions 1.10 dated 2013-07-08 and 1.11 dated 2015-01-21
Description: Cox regression with Firth's penalized likelihood
Author: R by Meinhard Ploner, Fortran by Georg Heinze
Maintainer: Georg Heinze
DESCRIPTION | 11 ++++++-----
MD5 | 10 +++++-----
NAMESPACE | 7 ++++++-
man/coxphf.rd | 17 +++++++++--------
man/coxphfplot.Rd | 12 ++++++------
man/coxphftest.Rd | 13 +++++++------
6 files changed, 39 insertions(+), 31 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Diff between ChemoSpec versions 2.0-2 dated 2014-05-31 and 3.0-1 dated 2015-01-21
Description: A collection of functions for plotting spectra (NMR, IR etc) and carrying out various forms of top-down exploratory data analysis, such as HCA, PCA and model-based clustering. The design allows comparison of data from samples which fall into groups such as treatment vs. control. Robust methods appropriate for this type of high-dimensional data are available. ChemoSpec is designed to be very user friendly and suitable for people with limited background in R.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson
DESCRIPTION | 13 +-
MD5 | 166 +++++++++++++++---------------
NAMESPACE | 13 +-
NEWS | 31 +++++
R/clupaSpectra.R |only
R/evalClusters.R |only
R/files2SpectraObject.R | 5
R/hcaScores.R | 12 +-
R/hcaSpectra.R | 9 +
R/normSpectra.R | 30 +++++
R/plotHCA.R | 4
R/plotScores.R | 5
R/removeGroup.R | 13 ++
R/sumSpectra.R | 9 +
build/vignette.rds |binary
data/SrE.IR.RData |binary
inst/CITATION | 7 -
inst/doc/ChemoSpec.R | 63 +++++------
inst/doc/ChemoSpec.Rnw | 242 ++++++++++++++++++++------------------------
inst/doc/ChemoSpec.pdf |binary
man/ChemoSpec-package.Rd | 6 -
man/CuticleIR.Rd | 2
man/LoopThruSpectra.Rd | 2
man/Spectra.Rd | 2
man/SrE.IR.Rd | 5
man/aovPCA.Rd | 3
man/aovPCAloadings.Rd | 3
man/aovPCAscores.Rd | 2
man/avgFacLvls.Rd | 4
man/baselineSpec.Rd | 2
man/binBuck.Rd | 2
man/binData.Rd | 2
man/calcSN.Rd | 2
man/check4Gaps.Rd | 2
man/chkSpectra.Rd | 2
man/classPCA.Rd | 2
man/clupaSpectra.Rd |only
man/colLeaf.Rd | 2
man/colorSymbol.Rd | 2
man/conColScheme.Rd | 2
man/coordProjCS.Rd | 2
man/evalClusters.Rd |only
man/files2SpectraObject.Rd | 2
man/findTMS.Rd | 2
man/groupNcolor.Rd | 2
man/hcaScores.Rd | 8 -
man/hcaSpectra.Rd | 8 -
man/hmapSpectra.Rd | 2
man/hypTestScores.Rd | 2
man/isWholeNo.Rd | 2
man/labelExtremes.Rd | 2
man/labelExtremes3d.Rd | 2
man/makeEllipsoid.Rd | 2
man/mclust3D.Rd | 2
man/mclust3dSpectra.Rd | 2
man/mclustSpectra.Rd | 2
man/normSpectra.Rd | 10 +
man/normVec.Rd | 2
man/pcaBoot.Rd | 2
man/pcaDiag.Rd | 2
man/plot2Loadings.Rd | 2
man/plotHCA.Rd | 16 +-
man/plotLoadings.Rd | 2
man/plotScores.Rd | 8 +
man/plotScores3D.Rd | 2
man/plotScoresCor.Rd | 2
man/plotScoresDecoration.Rd | 2
man/plotScoresRGL.Rd | 2
man/plotScree.Rd | 2
man/plotSpectra.Rd | 2
man/q2rPCA.Rd | 2
man/readBrukerTxt.Rd | 2
man/readJDX.Rd | 2
man/removeFreq.Rd | 4
man/removeSample.Rd | 4
man/robPCA.Rd | 2
man/rowDist.Rd | 2
man/sPlotSpectra.Rd | 8 +
man/seXy.Rd | 2
man/shrinkLeaf.Rd | 2
man/specSurvey.Rd | 2
man/splitSpectraGroups.Rd | 2
man/sumGroups.Rd | 2
man/sumSpectra.Rd | 4
vignettes/ChemoSpec.Rnw | 242 ++++++++++++++++++++------------------------
vignettes/chemometrics.bib | 71 +++++++-----
86 files changed, 606 insertions(+), 516 deletions(-)
Title: Collection of Configurable GTK+ Menus
Diff between MenuCollection versions 1.1 dated 2015-01-05 and 1.2 dated 2015-01-21
More information about MenuCollection at CRAN
Description: Set of configurable menus built with GTK+ to graphically interface new functions.
Author: Gianmarco Polotti
Maintainer: Gianmarco Polotti
DESCRIPTION | 6 +-
MD5 | 110 ++++++++++++++++++++++----------------------
R/menucollection.r | 24 ++++-----
man/dovc.Rd | 10 ++--
man/givedim.Rd | 6 +-
man/givemat.Rd | 13 ++---
man/inpboxc.Rd | 14 ++---
man/inpboxc2.Rd | 14 ++---
man/inpboxc2k.Rd | 16 +++---
man/inpboxck.Rd | 12 ++--
man/inpboxcke.Rd | 14 ++---
man/inpboxcr2.Rd | 12 ++--
man/inpboxcr3.Rd | 13 ++---
man/inpboxcr4.Rd | 14 +++--
man/inpboxe1.Rd | 12 ++--
man/inpboxe2.Rd | 10 ++--
man/inpboxe2c.Rd | 14 ++---
man/inpboxe2k.Rd | 12 ++--
man/inpboxe2k2.Rd | 12 ++--
man/inpboxe2r2.Rd | 12 ++--
man/inpboxe3.Rd | 12 ++--
man/inpboxe3c.Rd | 16 +++---
man/inpboxe3ce.Rd | 14 +++--
man/inpboxe3k.Rd | 12 ++--
man/inpboxe3k2.Rd | 12 ++--
man/inpboxe3k3.Rd | 12 ++--
man/inpboxe4.Rd | 12 ++--
man/inpboxe4c2.Rd | 18 ++++---
man/inpboxe4c2k.Rd | 20 ++++----
man/inpboxe4cek2.Rd | 14 +++--
man/inpboxe4ck.Rd | 18 ++++---
man/inpboxe4k.Rd | 14 +++--
man/inpboxe4k2.Rd | 14 +++--
man/inpboxe4k3.Rd | 14 +++--
man/inpboxe4r2.Rd | 12 ++--
man/inpboxe5.Rd | 12 ++--
man/inpboxe5k2.Rd | 14 +++--
man/inpboxe5k3.Rd | 12 ++--
man/inpboxe6k2.Rd | 14 +++--
man/inpboxe6k3.Rd | 14 +++--
man/inpboxe6r2.Rd | 14 +++--
man/inpboxe7k2.Rd | 12 ++--
man/inpboxe7r2.Rd | 12 ++--
man/inpboxe8r2.Rd | 12 ++--
man/inpboxec.Rd | 14 ++---
man/inpboxecece.Rd | 18 ++++---
man/inpboxek2.Rd | 14 ++---
man/inpboxer3.Rd | 10 ++--
man/inpboxk6.Rd | 12 ++--
man/inpboxk6k6e6.Rd | 18 ++++---
man/inpboxk7k7.Rd | 16 +++---
man/inpboxlist.Rd | 15 +++---
man/inpboxr2.Rd | 14 ++---
man/messabox.Rd | 6 +-
man/messayesno.Rd | 10 ++--
man/workspace_management.Rd | 13 ++---
56 files changed, 442 insertions(+), 398 deletions(-)
Permanent link
Title: Functions for graphical Markov models
Diff between ggm versions 2.2 dated 2014-12-04 and 2.3 dated 2015-01-21
Description: Functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.
Author: Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Maintainer: Giovanni M. Marchetti
DESCRIPTION | 12 ++++++------
MD5 | 4 ++--
man/fitmlogit.Rd | 3 +--
3 files changed, 9 insertions(+), 10 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.4.8.11 dated 2014-08-12 and 1.5.1 dated 2015-01-21
Description: A general purpose toolbox for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multi-levels include within and between group statistics, including correlations and factor analysis. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
psych-1.4.8.11/psych/R/model.fit.R |only
psych-1.5.1/psych/DESCRIPTION | 18 -
psych-1.5.1/psych/MD5 | 196 +++++++--------
psych-1.5.1/psych/NAMESPACE | 23 +
psych-1.5.1/psych/R/ICLUST.R | 2
psych-1.5.1/psych/R/ICLUST.rgraph.R | 6
psych-1.5.1/psych/R/Promax.R | 16 -
psych-1.5.1/psych/R/VSS.R | 30 +-
psych-1.5.1/psych/R/Yule.R | 57 ++++
psych-1.5.1/psych/R/alpha.R | 16 -
psych-1.5.1/psych/R/bifactor.R | 17 -
psych-1.5.1/psych/R/cor.ci.R | 11
psych-1.5.1/psych/R/cor.plot.R | 17 -
psych-1.5.1/psych/R/cta.R | 2
psych-1.5.1/psych/R/cta.new.R |only
psych-1.5.1/psych/R/describe.R | 170 +++++++------
psych-1.5.1/psych/R/diagram.R | 25 +
psych-1.5.1/psych/R/draw.tetra.R | 14 -
psych-1.5.1/psych/R/errorCircles.r | 4
psych-1.5.1/psych/R/fa.R | 190 +++++++++++----
psych-1.5.1/psych/R/fa.parallel.R | 49 +++
psych-1.5.1/psych/R/fa.rgraph.R | 6
psych-1.5.1/psych/R/factor.congruence.R | 3
psych-1.5.1/psych/R/factor.minres.R | 2
psych-1.5.1/psych/R/factor.pa.R | 2
psych-1.5.1/psych/R/factor.stats.R | 5
psych-1.5.1/psych/R/factor.wls.R | 2
psych-1.5.1/psych/R/glb.algebraic.R | 5
psych-1.5.1/psych/R/kaiser.R | 5
psych-1.5.1/psych/R/make.hierarchical.R | 11
psych-1.5.1/psych/R/mediate.r |only
psych-1.5.1/psych/R/nearcor.r | 2
psych-1.5.1/psych/R/omega.R | 33 +-
psych-1.5.1/psych/R/omega.graph.R | 8
psych-1.5.1/psych/R/omegaSem.R | 9
psych-1.5.1/psych/R/parcels.R | 2
psych-1.5.1/psych/R/phi.demo.R | 28 +-
psych-1.5.1/psych/R/polychoric.R | 58 ++--
psych-1.5.1/psych/R/principal.R | 2
psych-1.5.1/psych/R/print.psych.R | 79 +++++-
psych-1.5.1/psych/R/print.psych.fa.R | 9
psych-1.5.1/psych/R/print.psych.omega.R | 8
psych-1.5.1/psych/R/print.psych.schmid.R | 13 -
psych-1.5.1/psych/R/r.test.R | 2
psych-1.5.1/psych/R/schmid.R | 85 ++++--
psych-1.5.1/psych/R/scoreOverlap.r | 3
psych-1.5.1/psych/R/set.cor.R | 109 ++++++--
psych-1.5.1/psych/R/sim.hierarchical.R | 12
psych-1.5.1/psych/R/sim.structural.R | 33 +-
psych-1.5.1/psych/R/stats.by.r | 326 +++++++++++++-------------
psych-1.5.1/psych/R/statsBy.r | 3
psych-1.5.1/psych/R/structure.graph.R | 7
psych-1.5.1/psych/R/summary.psych.R | 35 --
psych-1.5.1/psych/R/test.psych.r | 20 -
psych-1.5.1/psych/R/tetrachor.R | 58 ++--
psych-1.5.1/psych/R/toDotty.R | 7
psych-1.5.1/psych/inst/CITATION | 8
psych-1.5.1/psych/inst/NEWS.Rd | 53 +++-
psych-1.5.1/psych/inst/doc/overview.R | 205 ++++++++++------
psych-1.5.1/psych/inst/doc/overview.Rnw | 111 +++++++-
psych-1.5.1/psych/inst/doc/overview.pdf |binary
psych-1.5.1/psych/inst/doc/psych_for_sem.R | 87 +++---
psych-1.5.1/psych/inst/doc/psych_for_sem.Rnw | 4
psych-1.5.1/psych/inst/doc/psych_for_sem.pdf |binary
psych-1.5.1/psych/man/Harman.5.Rd | 3
psych-1.5.1/psych/man/VSS.Rd | 8
psych-1.5.1/psych/man/Yule.Rd | 30 ++
psych-1.5.1/psych/man/affect.Rd | 10
psych-1.5.1/psych/man/alpha.Rd | 11
psych-1.5.1/psych/man/bifactor.Rd | 3
psych-1.5.1/psych/man/bock.table.Rd | 3
psych-1.5.1/psych/man/burt.Rd | 5
psych-1.5.1/psych/man/cluster.cor.Rd | 45 +--
psych-1.5.1/psych/man/cor.ci.Rd | 14 -
psych-1.5.1/psych/man/cor.plot.Rd | 8
psych-1.5.1/psych/man/cor.smooth.Rd | 13 -
psych-1.5.1/psych/man/corr.test.Rd | 2
psych-1.5.1/psych/man/cortest.mat.Rd | 4
psych-1.5.1/psych/man/cosinor.Rd | 3
psych-1.5.1/psych/man/cta.Rd | 10
psych-1.5.1/psych/man/describe.Rd | 10
psych-1.5.1/psych/man/diagram.Rd | 2
psych-1.5.1/psych/man/draw.tetra.Rd | 10
psych-1.5.1/psych/man/error.circles.Rd | 6
psych-1.5.1/psych/man/fa.Rd | 31 +-
psych-1.5.1/psych/man/fa.parallel.Rd | 11
psych-1.5.1/psych/man/glb.algebraic.Rd | 19 -
psych-1.5.1/psych/man/mediate.Rd |only
psych-1.5.1/psych/man/omega.Rd | 10
psych-1.5.1/psych/man/pairs.panels.Rd | 5
psych-1.5.1/psych/man/phi.Rd | 2
psych-1.5.1/psych/man/phi2poly.Rd | 2
psych-1.5.1/psych/man/schmid.Rd | 3
psych-1.5.1/psych/man/set.cor.Rd | 33 +-
psych-1.5.1/psych/man/sim.item.Rd | 8
psych-1.5.1/psych/man/simulation.circ.Rd | 13 -
psych-1.5.1/psych/man/test.psych.Rd | 19 +
psych-1.5.1/psych/man/tetrachor.Rd | 10
psych-1.5.1/psych/man/withinBetween.Rd | 1
psych-1.5.1/psych/vignettes/overview.Rnw | 111 +++++++-
psych-1.5.1/psych/vignettes/psych_for_sem.Rnw | 4
101 files changed, 1806 insertions(+), 999 deletions(-)
Title: Online Principal Component Analysis
Diff between onlinePCA versions 1.0 dated 2014-12-26 and 1.0-1 dated 2015-01-21
Description: Online PCA for multivariate and functional data using perturbation, incremental, and stochastic gradient methods.
Author: David Degras [aut, cre], Herve Cardot [ctb]
Maintainer: David Degras
DESCRIPTION | 11 ++++++-----
MD5 | 25 +++++++++++++------------
NEWS |only
R/incRpca.R | 10 ++++------
R/perturbationRpca.R | 7 +++----
R/secularRpca.R | 8 ++++----
R/sgapca.R | 8 ++++----
R/snlpca.R | 8 ++++----
man/incRpca.Rd | 1 +
man/onlinePCA-package.Rd | 5 +++--
man/perturbationRpca.Rd | 6 ++++--
man/secularRpca.Rd | 5 ++++-
man/sgapca.Rd | 7 +++++--
man/snlpca.Rd | 5 ++++-
14 files changed, 59 insertions(+), 47 deletions(-)
Title: Methods that Apply to Rows and Columns of a Matrix
Diff between matrixStats versions 0.12.2 dated 2014-12-07 and 0.13.0 dated 2015-01-21
Description: Methods operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson
matrixStats-0.12.2/matrixStats/R/anyMissing.R |only
matrixStats-0.12.2/matrixStats/R/madDiff.R |only
matrixStats-0.12.2/matrixStats/R/rowMedians.R |only
matrixStats-0.12.2/matrixStats/R/rowWeightedMeans.matrix.R |only
matrixStats-0.12.2/matrixStats/R/rowWeightedMedians.matrix.R |only
matrixStats-0.12.2/matrixStats/R/sdDiff.R |only
matrixStats-0.12.2/matrixStats/man/rowAvgsPerColSet.matrix.Rd |only
matrixStats-0.12.2/matrixStats/man/rowWeightedMeans.matrix.Rd |only
matrixStats-0.12.2/matrixStats/man/rowWeightedMedians.matrix.Rd |only
matrixStats-0.12.2/matrixStats/tests/sdDiff.R |only
matrixStats-0.13.0/matrixStats/DESCRIPTION | 15
matrixStats-0.13.0/matrixStats/MD5 | 193 ++++---
matrixStats-0.13.0/matrixStats/NAMESPACE | 58 --
matrixStats-0.13.0/matrixStats/NEWS | 67 ++
matrixStats-0.13.0/matrixStats/R/999.package.R | 21
matrixStats-0.13.0/matrixStats/R/anyMissing.S4.R |only
matrixStats-0.13.0/matrixStats/R/benchmark.R | 2
matrixStats-0.13.0/matrixStats/R/binCounts.R | 15
matrixStats-0.13.0/matrixStats/R/binMeans.R | 15
matrixStats-0.13.0/matrixStats/R/diff2.R |only
matrixStats-0.13.0/matrixStats/R/rowAvgsPerColSet.R | 15
matrixStats-0.13.0/matrixStats/R/rowCollapse.R | 16
matrixStats-0.13.0/matrixStats/R/rowCounts.R | 155 ++++--
matrixStats-0.13.0/matrixStats/R/rowDiffs.R | 25
matrixStats-0.13.0/matrixStats/R/rowIQRs.R | 49 +
matrixStats-0.13.0/matrixStats/R/rowMedians.S4.R |only
matrixStats-0.13.0/matrixStats/R/rowOrderStats.R | 20
matrixStats-0.13.0/matrixStats/R/rowQuantiles.R | 54 +-
matrixStats-0.13.0/matrixStats/R/rowRanges.R | 20
matrixStats-0.13.0/matrixStats/R/rowRanks.R | 20
matrixStats-0.13.0/matrixStats/R/rowTabulates.R | 28 -
matrixStats-0.13.0/matrixStats/R/rowVars.R | 10
matrixStats-0.13.0/matrixStats/R/rowWeightedMeans.R |only
matrixStats-0.13.0/matrixStats/R/rowWeightedMedians.R |only
matrixStats-0.13.0/matrixStats/R/varDiff.R | 257 +++++++++-
matrixStats-0.13.0/matrixStats/R/weightedMad.R | 22
matrixStats-0.13.0/matrixStats/R/weightedMean.R |only
matrixStats-0.13.0/matrixStats/R/weightedMedian.R | 81 ++-
matrixStats-0.13.0/matrixStats/R/weightedVar.R | 42 +
matrixStats-0.13.0/matrixStats/R/zzz.R | 4
matrixStats-0.13.0/matrixStats/build |only
matrixStats-0.13.0/matrixStats/inst/benchmarking/colRowAnyMissings.md.rsp | 32 -
matrixStats-0.13.0/matrixStats/inst/benchmarking/colRowDiffs.md.rsp | 17
matrixStats-0.13.0/matrixStats/inst/benchmarking/colRowOrderStats.md.rsp | 8
matrixStats-0.13.0/matrixStats/inst/benchmarking/colRowVars.md.rsp | 22
matrixStats-0.13.0/matrixStats/inst/benchmarking/count.md.rsp |only
matrixStats-0.13.0/matrixStats/inst/benchmarking/includes/setup.md.rsp | 20
matrixStats-0.13.0/matrixStats/inst/benchmarking/index.md.rsp | 2
matrixStats-0.13.0/matrixStats/inst/benchmarking/indexByRow.md.rsp | 64 +-
matrixStats-0.13.0/matrixStats/inst/benchmarking/weightedMean.md.rsp |only
matrixStats-0.13.0/matrixStats/inst/benchmarking/weightedMedian.md.rsp | 34 -
matrixStats-0.13.0/matrixStats/inst/doc |only
matrixStats-0.13.0/matrixStats/man/anyMissing.Rd | 16
matrixStats-0.13.0/matrixStats/man/binCounts.Rd | 4
matrixStats-0.13.0/matrixStats/man/binMeans.Rd | 4
matrixStats-0.13.0/matrixStats/man/diff2.Rd |only
matrixStats-0.13.0/matrixStats/man/matrixStats-package.Rd | 25
matrixStats-0.13.0/matrixStats/man/rowAvgsPerColSet.Rd |only
matrixStats-0.13.0/matrixStats/man/rowCollapse.Rd | 6
matrixStats-0.13.0/matrixStats/man/rowCounts.Rd | 22
matrixStats-0.13.0/matrixStats/man/rowDiffs.Rd | 8
matrixStats-0.13.0/matrixStats/man/rowIQRs.Rd | 13
matrixStats-0.13.0/matrixStats/man/rowMedians.Rd | 2
matrixStats-0.13.0/matrixStats/man/rowOrderStats.Rd | 2
matrixStats-0.13.0/matrixStats/man/rowRanges.Rd | 6
matrixStats-0.13.0/matrixStats/man/rowRanks.Rd | 2
matrixStats-0.13.0/matrixStats/man/rowTabulates.Rd | 6
matrixStats-0.13.0/matrixStats/man/rowWeightedMeans.Rd |only
matrixStats-0.13.0/matrixStats/man/rowWeightedMedians.Rd |only
matrixStats-0.13.0/matrixStats/man/varDiff.Rd | 59 +-
matrixStats-0.13.0/matrixStats/man/weightedMad.Rd | 6
matrixStats-0.13.0/matrixStats/man/weightedMean.Rd |only
matrixStats-0.13.0/matrixStats/man/weightedMedian.Rd | 49 -
matrixStats-0.13.0/matrixStats/man/weightedVar.Rd | 18
matrixStats-0.13.0/matrixStats/src/allocMatrix2.c | 10
matrixStats-0.13.0/matrixStats/src/anyMissing.c | 17
matrixStats-0.13.0/matrixStats/src/colCounts.c | 58 +-
matrixStats-0.13.0/matrixStats/src/colCounts_TYPE-template.h | 145 ++++-
matrixStats-0.13.0/matrixStats/src/diff2.c |only
matrixStats-0.13.0/matrixStats/src/diff2_TYPE-template.h |only
matrixStats-0.13.0/matrixStats/src/indexByRow.c | 2
matrixStats-0.13.0/matrixStats/src/meanOver.c | 2
matrixStats-0.13.0/matrixStats/src/meanOver_TYPE-template.h | 10
matrixStats-0.13.0/matrixStats/src/productExpSumLog_TYPE-template.h | 4
matrixStats-0.13.0/matrixStats/src/rowCounts.c | 13
matrixStats-0.13.0/matrixStats/src/rowCounts_TYPE-template.h | 147 ++++-
matrixStats-0.13.0/matrixStats/src/rowDiffs.c |only
matrixStats-0.13.0/matrixStats/src/rowDiffs_TYPE-template.h |only
matrixStats-0.13.0/matrixStats/src/sumOver.c | 2
matrixStats-0.13.0/matrixStats/src/sumOver_TYPE-template.h | 2
matrixStats-0.13.0/matrixStats/src/utils.h | 6
matrixStats-0.13.0/matrixStats/src/weightedMean.c |only
matrixStats-0.13.0/matrixStats/src/weightedMean_TYPE-template.h |only
matrixStats-0.13.0/matrixStats/src/weightedMedian.c |only
matrixStats-0.13.0/matrixStats/src/weightedMedian_TYPE-template.h |only
matrixStats-0.13.0/matrixStats/tests/anyMissing.R | 7
matrixStats-0.13.0/matrixStats/tests/binCounts.R | 16
matrixStats-0.13.0/matrixStats/tests/binMeans,binCounts.R | 35 +
matrixStats-0.13.0/matrixStats/tests/count.R |only
matrixStats-0.13.0/matrixStats/tests/diff2.R |only
matrixStats-0.13.0/matrixStats/tests/meanOver.R | 19
matrixStats-0.13.0/matrixStats/tests/rowAllAnys.R |only
matrixStats-0.13.0/matrixStats/tests/rowAvgsPerColSet.R |only
matrixStats-0.13.0/matrixStats/tests/rowCounts.R | 135 ++---
matrixStats-0.13.0/matrixStats/tests/rowDiffs.R | 72 +-
matrixStats-0.13.0/matrixStats/tests/rowIQRs.R |only
matrixStats-0.13.0/matrixStats/tests/rowMads.R | 19
matrixStats-0.13.0/matrixStats/tests/rowProds.R | 92 ++-
matrixStats-0.13.0/matrixStats/tests/rowQuantiles.R | 11
matrixStats-0.13.0/matrixStats/tests/rowSds.R | 36 +
matrixStats-0.13.0/matrixStats/tests/rowTabulates.R | 11
matrixStats-0.13.0/matrixStats/tests/rowVarDiffs.R |only
matrixStats-0.13.0/matrixStats/tests/rowVars.R | 29 +
matrixStats-0.13.0/matrixStats/tests/sumOver.R | 19
matrixStats-0.13.0/matrixStats/tests/varDiff_etal.R |only
matrixStats-0.13.0/matrixStats/tests/weightedMean.R |only
matrixStats-0.13.0/matrixStats/tests/weightedMedian.R |only
matrixStats-0.13.0/matrixStats/tests/weightedVar_etal.R |only
matrixStats-0.13.0/matrixStats/vignettes |only
119 files changed, 1774 insertions(+), 796 deletions(-)
Title: Distributed Gaussian Process Calculations
Diff between bigGP versions 0.1-4 dated 2014-12-06 and 0.1-5 dated 2015-01-21
Description: Distributes Gaussian process calculations across nodes
in a distributed memory setting, using Rmpi. The bigGP class
provides high-level methods for maximum likelihood with normal data,
prediction, calculation of uncertainty (i.e., posterior covariance
calculations), and simulation of realizations. In addition, bigGP
provides an API for basic matrix calculations with distributed
covariance matrices, including Cholesky decomposition, back/forwardsolve,
crossproduct, and matrix multiplication.
Author: Christopher Paciorek [aut, cre],
Benjamin Lipshitz [aut],
Prabhat [ctb],
Cari Kaufman [ctb],
Tina Zhuo [ctb],
Rollin Thomas [ctb]
Maintainer: Christopher Paciorek
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 4 ++++
data/SN2011fe.rda |binary
inst/CITATION | 39 +++++++++++++++++++++++----------------
man/bigGP.Rd | 3 +--
man/krigeProblem-class.Rd | 7 +++----
7 files changed, 41 insertions(+), 32 deletions(-)