Thu, 22 Jan 2015

Package mirtCAT updated to version 0.4 with previous version 0.3 dated 2014-12-15

Title: Computerized Adaptive Testing with Multidimensional Item Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive and non-adaptive educational and psychological tests using the shiny package. Suitable for applying unidimensional and multidimensional computerized adaptive tests using item response theory methodology and for creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers

Diff between mirtCAT versions 0.3 dated 2014-12-15 and 0.4 dated 2015-01-22

 DESCRIPTION                         |   18 -
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 NAMESPACE                           |    6 
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 vignettes/mirtCAT-vignettes.Rmd     |    2 
 35 files changed, 1392 insertions(+), 1060 deletions(-)

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Package mirt updated to version 1.8 with previous version 1.7 dated 2014-12-15

Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm. Exploratory and confirmatory models can be estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also are available for detecting differential item functioning and modelling item and person covariates.
Author: Phil Chalmers [aut, cre, cph], Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers

Diff between mirt versions 1.7 dated 2014-12-15 and 1.8 dated 2015-01-22

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 src/Estep.cpp                    |   24 +++----
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 tests/tests/test-01-mirtOne.R    |    1 
 tests/tests/test-02-mirtTwo.R    |    3 
 tests/tests/test-09-mirt.model.R |   22 ++++--
 tests/tests/test-10-extras.R     |    6 +
 vignettes/mirt-vignettes.Rmd     |    2 
 45 files changed, 515 insertions(+), 299 deletions(-)

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Package matrixStats updated to version 0.13.1 with previous version 0.13.0 dated 2015-01-21

Title: Methods that Apply to Rows and Columns of a Matrix
Description: Methods operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson

Diff between matrixStats versions 0.13.0 dated 2015-01-21 and 0.13.1 dated 2015-01-22

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 vignettes/matrixStats-methods.md.rsp |    2 
 11 files changed, 119 insertions(+), 106 deletions(-)

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New package shinybootstrap2 with initial version 0.2
Package: shinybootstrap2
Title: Bootstrap 2 web components for use with Shiny
Version: 0.2
Authors@R: c( person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com"), person(family = "RStudio", role = "cph"), person("Mark", "Otto", role = "ctb", comment = "Bootstrap library"), person("Jacob", "Thornton", role = "ctb", comment = "Bootstrap library"), person(family = "Bootstrap contributors", role = "ctb", comment = "Bootstrap library; authors listed at https://github.com/twbs/bootstrap/graphs/contributors"), person(family = "Twitter, Inc", role = "cph", comment = "Bootstrap library"), person("Brian", "Reavis", role = c("ctb", "cph"), comment = "selectize.js library"), person("Egor", "Khmelev", role = c("ctb", "cph"), comment = "jslider library"), person(family = "SpryMedia Limited", role = c("ctb", "cph"), comment = "DataTables library") )
Description: Provides Bootstrap 2 web components for use with the Shiny package. With versions of Shiny prior to 0.11, these Bootstrap 2 components were included as part of the package. Later versions of Shiny include Bootstrap 3, so the Bootstrap 2 components have been moved into this package for those uses who rely on features specific to Bootstrap 2.
Depends: R (>= 3.0.0)
License: GPL-3 | file LICENSE
LazyData: true
Imports: htmltools (>= 0.2.6), jsonlite (>= 0.9.12), shiny
Packaged: 2015-01-22 17:07:03 UTC; winston
Author: Winston Chang [aut, cre], RStudio [cph], Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library; authors listed at https://github.com/twbs/bootstrap/graphs/contributors), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Egor Khmelev [ctb, cph] (jslider library), SpryMedia Limited [ctb, cph] (DataTables library)
Maintainer: Winston Chang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 19:16:49

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New package lba with initial version 1.0
Package: lba
Title: Latent Budget Analysis for Compositional Data
Version: 1.0
Date: 2015-01-22
Author: Enio G. Jelihovschi Ivan Bezerra Allaman
Maintainer: Enio G. Jelihovschi
Depends: R (>= 3.1.2), MASS, alabama, plotrix, ca
Description: Latent budget analysis is a method for the analysis of a two-way contingency table with an exploratory variable and a response variable. It is specially designed for compositional data.
Encoding: latin1
License: GPL (>= 2)
Packaged: 2015-01-22 12:13:45 UTC; ivan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 18:42:44

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Package ltsk updated to version 1.0.2 with previous version 1.0.1 dated 2014-02-06

Title: Local Time Space Kriging
Description: Implements local spatial and local spatiotemporal Kriging based on local spatial and local spatiotemporal variograms, respectively.
Author: Naresh Kumar, Dong Liang, Jin Chen, Jun Chen
Maintainer: Dong Liang

Diff between ltsk versions 1.0.1 dated 2014-02-06 and 1.0.2 dated 2015-01-22

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New package ESEA with initial version 1.0
Package: ESEA
Version: 1.0
Title: ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
Author: Junwei Han, Xinrui Shi, Chunquan Li
Maintainer: Xinrui Shi
Description: The package can identify the dysregulated canonical pathways by investigating the changes of biological relationships of pathways in the context of gene expression data. (1) The ESEA package constructs a background set of edges by extracting pathway structure (e.g. interaction, regulation, modification, and binding etc.) from the seven public databases (KEGG; Reactome; Biocarta; NCI; SPIKE; HumanCyc; Panther) and the edge sets of pathways for each of the above databases. (2) The ESEA package can can quantify the change of correlation between genes for each edge based on gene expression data with cases and controls. (3) The ESEA package uses the weighted Kolmogorov-Smirnov statistic to calculate an edge enrichment score (EES), which reflects the degree to which a given pathway is associated the specific phenotype. (4) The ESEA package can provide the visualization of the results.
Depends: R (>= 2.10),igraph,XML,parmigene
Suggests: Matrix,graph
Collate: calEdgeCorScore.R ESEA.Main.R PlotGlobEdgeCorProfile.R PlotPathwayGraph.R PlotRunEnrichment.R SavePathway2File.R getEnvironmentData.R GetExampleData.R GetEdgesBackgrandData.R GetPathwayEdgeData.R
LazyData: Yes
License: GPL (>= 2)
biocViews: Statistics, Pathways, edge, enrichment analysis
Packaged: 2015-01-22 12:50:32 UTC; Administrator
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 15:58:44

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New package RcmdrPlugin.NMBU with initial version 1.8.0
Package: RcmdrPlugin.NMBU
Type: Package
Title: R Commander Plug-In for University Level Applied Statistics
Version: 1.8.0
Date: 2015-01-22
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland
Encoding: latin1
Depends: R (>= 3.0.0), mixlm (>= 1.0.8), MASS, pls, xtable
Imports: Rcmdr (>= 2.0-0), tcltk
Suggests: lme4, leaps, mvtnorm, gmodels, abind, lattice, pbkrtest, vcd, multcomp, e1071, nnet
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
RcmdrModels: mvr, lda, qda, prcomp, mer, rsm, glmerMod, lmerMod
NeedsCompilation: no
Packaged: 2015-01-22 08:26:37 UTC; kristian.liland
Repository: CRAN
Date/Publication: 2015-01-22 13:35:54

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Package BcDiag updated to version 1.0.8 with previous version 1.0.7 dated 2014-12-03

Title: Diagnostics plots for Bicluster Data
Description: Diagnostic tools based on two-way anova and median-polish residual plots for Bicluster output obtained from packages; "biclust" by Kaiser et al.(2008),"isa2" by Csardi et al. (2010) and "fabia" by Hochreiter et al. (2010). Moreover, It provides visualization tools for bicluster output and corresponding non-bicluster rows- or columns outcomes. It has also extended the idea of Kaiser et al.(2008) which is, extracting bicluster output in a text format, by adding two bicluster methods from the fabia and isa2 R packages.
Author: Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Maintainer: Ewoud De Troyer

Diff between BcDiag versions 1.0.7 dated 2014-12-03 and 1.0.8 dated 2015-01-22

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 5 files changed, 49 insertions(+), 23 deletions(-)

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Package wesanderson updated to version 0.3.2 with previous version 0.3 dated 2014-03-27

Title: A Wes Anderson Palette Generator
Description: Palettes generated mostly from Wes Anderson movies
Author: Karthik Ram [aut, cre], Hadley Wickham [aut], Clark Richards [ctb]
Maintainer: Karthik Ram

Diff between wesanderson versions 0.3 dated 2014-03-27 and 0.3.2 dated 2015-01-22

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Package timeordered updated to version 0.9.8 with previous version 0.9.7 dated 2014-10-22

Title: Time-ordered and time-aggregated network analyses
Description: Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder

Diff between timeordered versions 0.9.7 dated 2014-10-22 and 0.9.8 dated 2015-01-22

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Package spocc updated to version 0.2.4 with previous version 0.2.2 dated 2014-10-24

Title: R Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources, including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine eBird, AntWeb, and more as sources become easily available. This package includes functionality for retrieving species occurrence data, combining that data, and creating various kinds of static and interactive maps.
Author: Scott Chamberlain [aut, cre], Karthik Ram [aut], Ted Hart [aut]
Maintainer: Scott Chamberlain

Diff between spocc versions 0.2.2 dated 2014-10-24 and 0.2.4 dated 2015-01-22

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Package spacetime updated to version 1.1-3 with previous version 1.1-2 dated 2015-01-15

Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal combining or aggregating, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [cre, aut], Benedikt Graeler [ctb], Tom Gottfried [ctb], Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma

Diff between spacetime versions 1.1-2 dated 2015-01-15 and 1.1-3 dated 2015-01-22

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More information about spacetime at CRAN
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Package UsingR updated to version 2.0-4 with previous version 2.0-3 dated 2015-01-21

Title: Data Sets, etc. for the Text "Using R for Introductory Statistics", Second Edition
Description: A collection of data sets to accompany the textbook "Using R for Introductory Statistics," second edition.
Author: John Verzani
Maintainer: John Verzani

Diff between UsingR versions 2.0-3 dated 2015-01-21 and 2.0-4 dated 2015-01-22

 DESCRIPTION   |   10 +++++-----
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Package Frames2 updated to version 0.1.0 with previous version 0.0.3 dated 2014-09-02

Title: Estimation in dual frame surveys
Description: Point and interval estimation in dual frame surveys. In contrast to classic sampling theory, where only one sampling frame is considered, dual frame methodology assumes that there are two frames available for sampling and that, overall, they cover the entire target population. Then, two probability samples (one from each frame) are drawn and information collected is suitably combined to get estimators of the parameter of interest.
Author: Antonio Arcos , Maria del Mar Rueda , Maria Giovanna Ranalli and David Molina
Maintainer: David Molina

Diff between Frames2 versions 0.0.3 dated 2014-09-02 and 0.1.0 dated 2015-01-22

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 Frames2-0.1.0/Frames2/man/PiklA.Rd            |    6 
 Frames2-0.1.0/Frames2/man/PiklB.Rd            |    6 
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 Frames2-0.1.0/Frames2/man/VarHT.Rd            |    8 
 Frames2-0.1.0/Frames2/man/WeightsCalDF.Rd     |   18 
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 69 files changed, 3139 insertions(+), 1772 deletions(-)

More information about Frames2 at CRAN
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