Title: GUI Tools Made Easy: Interact with Models and Explore Data
Diff between PBSmodelling versions 2.66.264 dated 2014-04-07 and 2.67.266 dated 2015-01-23
Description: Provides software to facilitate the design, testing, and operation
of computer models. It focuses particularly on tools that make it easy to
construct and edit a customized graphical user interface (GUI). Although our
simplified GUI language depends heavily on the R interface to the Tcl/Tk
package, a user does not need to know Tcl/Tk. Examples illustrate models
built with other R packages, including PBSmapping, PBSddesolve, and BRugs.
A complete user's guide `PBSmodelling-UG.pdf' shows how to use this package
effectively.
Author: Jon T. Schnute
Maintainer: Rowan Haigh
DESCRIPTION | 37 ++++-------
MD5 | 30 ++++----
NAMESPACE | 2
R/listFuns.r | 151 ++++++++++++++++++++++++++++++++-------------
R/plotFuns.r | 12 ++-
R/presentTalk.r | 8 --
R/supportFuns.r | 40 ++++++++---
data/CCA.qbr.rda |binary
inst/PBStools/00ReadMe.txt | 18 ++---
inst/PBStools/RPaths.bat | 2
inst/PBStools/Rcopy.bat | 62 +++++++++---------
inst/doc/ChangeLog.txt | 8 ++
man/CCA.qbr.Rd | 2
man/readList.Rd | 21 +++---
man/showHelp.Rd | 3
man/viewCode.Rd | 5 +
16 files changed, 251 insertions(+), 150 deletions(-)
Title: Multi-paradigm Pipeline Implementation
Diff between pipeR versions 0.5 dated 2014-09-30 and 0.6 dated 2015-01-23
Description: Provides various styles of function chaining methods: Pipe
operator, Pipe object, and pipeline function, each representing a distinct
pipeline model yet sharing almost a common set of features: A value can be
piped to the first unnamed argument of a function and to dot symbol in an
enclosed expression. The syntax is designed to make the pipeline more
readable and friendly to a wide range of operations.
Author: Kun Ren
Maintainer: Kun Ren
pipeR-0.5/pipeR/inst |only
pipeR-0.6/pipeR/DESCRIPTION | 20
pipeR-0.6/pipeR/MD5 | 35 -
pipeR-0.6/pipeR/NAMESPACE | 3
pipeR-0.6/pipeR/NEWS | 41 +
pipeR-0.6/pipeR/R/functions.R | 197 ++++----
pipeR-0.6/pipeR/R/operator.R |only
pipeR-0.6/pipeR/R/pipe.R | 3
pipeR-0.6/pipeR/R/pipeR.R | 235 +---------
pipeR-0.6/pipeR/R/pipeline.R |only
pipeR-0.6/pipeR/R/utils.R | 21
pipeR-0.6/pipeR/README.md | 78 ++-
pipeR-0.6/pipeR/man/Pipe.Rd | 3
pipeR-0.6/pipeR/man/grapes-greater-than-greater-than-grapes.Rd | 50 +-
pipeR-0.6/pipeR/man/pipeR-package.Rd |only
pipeR-0.6/pipeR/man/pipeline.Rd |only
pipeR-0.6/pipeR/tests/testthat/test1-operator.R | 23
pipeR-0.6/pipeR/tests/testthat/test3-pipeline.R |only
18 files changed, 348 insertions(+), 361 deletions(-)
Title: Efficient authenticated interaction with the O*NET API
Diff between ONETr versions 1.0.1 dated 2014-11-04 and 1.0.2 dated 2015-01-23
Description: Provides a series of functions designed to enable users to easily search and interact with occupational data from the O*NET API
Author: Eric Knudsen
Maintainer: Eric Knudsen
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
R/keySearch.R | 3 +++
R/setCreds.R | 1 +
4 files changed, 13 insertions(+), 9 deletions(-)
Title: Calls Copy Number Variants from Targeted Sequence Data
Diff between ExomeDepth versions 1.1.1 dated 2015-01-13 and 1.1.4 dated 2015-01-23
Description: Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
Author: Vincent Plagnol
Maintainer: Vincent Plagnol
DESCRIPTION | 8 +-
MD5 | 16 ++--
NAMESPACE | 4 -
R/countBamInGranges.R | 139 +++++++++++++++++++-----------------
inst/doc/ExomeDepth-vignette.Rnw | 7 +
inst/doc/ExomeDepth-vignette.pdf |binary
man/countBamInGRanges.exomeDepth.Rd | 5 -
man/getBamCounts.Rd | 8 --
vignettes/ExomeDepth-vignette.Rnw | 7 +
9 files changed, 106 insertions(+), 88 deletions(-)
Title: Models for Data from Unmarked Animals
Diff between unmarked versions 0.10-4 dated 2014-04-28 and 0.10-5 dated 2015-01-23
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
Author: Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler
Maintainer: Richard Chandler
DESCRIPTION | 12 +--
MD5 | 42 ++++++------
NEWS | 22 ++++--
R/getDesign.R | 58 ++++++++++------
R/pcountOpen.R | 75 ++++++++++++++++-----
R/unmarkedFit.R | 137 ++++++++++++++++++++++++++++++++--------
R/utils.R | 2
build/vignette.rds |binary
inst/doc/cap-recap.pdf |binary
inst/doc/colext.pdf |binary
inst/doc/distsamp.pdf |binary
inst/doc/spp-dist.pdf |binary
inst/doc/unmarked.pdf |binary
inst/unitTests/sim.pcountOpen.r | 137 ++++++++++++++++++++++++++++++++++++++++
man/pcountOpen.Rd | 78 ++++++++++++++++------
man/unmarked-package.Rd | 4 -
man/unmarkedMultFrame.Rd | 3
man/unmarkedRanef-class.Rd | 6 -
src/Makevars.win | 3
src/nll_pcount.cpp | 2
src/nll_pcountOpen.cpp | 97 ++++++++++++++++++----------
src/nll_pcountOpen.h | 25 ++++++-
22 files changed, 540 insertions(+), 163 deletions(-)
Title: Interface to PLoS Journals Search API
Diff between rplos versions 0.4.1 dated 2014-07-22 and 0.4.6 dated 2015-01-23
Description: A programmatic interface to the SOLR based
search API provided by the Public Library
of Science journals to search their articles. Functions
are included for searching for articles, retrieving
articles, making plots, doing faceted searches, doing
highlight searches, and viewing results of highlighted
searches in a browser.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain
rplos-0.4.1/rplos/R/help.R |only
rplos-0.4.1/rplos/man/crossref.Rd |only
rplos-0.4.1/rplos/man/formatcrossref.Rd |only
rplos-0.4.1/rplos/tests/testthat/test-crossref.R |only
rplos-0.4.6/rplos/DESCRIPTION | 30
rplos-0.4.6/rplos/LICENSE |only
rplos-0.4.6/rplos/MD5 | 157 +--
rplos-0.4.6/rplos/NAMESPACE | 17
rplos-0.4.6/rplos/NEWS | 27
rplos-0.4.6/rplos/R/crossref.R | 69 -
rplos-0.4.6/rplos/R/facetplos.r | 45
rplos-0.4.6/rplos/R/formatarticleurl.R | 21
rplos-0.4.6/rplos/R/fulltext.R | 19
rplos-0.4.6/rplos/R/highplos.r | 129 --
rplos-0.4.6/rplos/R/journalnamekey.R | 8
rplos-0.4.6/rplos/R/plosabstract.R | 10
rplos-0.4.6/rplos/R/plosauthor.R | 12
rplos-0.4.6/rplos/R/plosfields.R | 8
rplos-0.4.6/rplos/R/plosfigtabcaps.R | 11
rplos-0.4.6/rplos/R/plossubject.R | 12
rplos-0.4.6/rplos/R/plostitle.R | 12
rplos-0.4.6/rplos/R/plosviews.R | 28
rplos-0.4.6/rplos/R/plosword.R | 75 -
rplos-0.4.6/rplos/R/plot_throughtime.R | 126 --
rplos-0.4.6/rplos/R/rplos-package.R |only
rplos-0.4.6/rplos/R/searchplos.R | 166 +--
rplos-0.4.6/rplos/R/zzz.R | 16
rplos-0.4.6/rplos/README.md | 394 +++++++-
rplos-0.4.6/rplos/build/vignette.rds |binary
rplos-0.4.6/rplos/data/isocodes.rda |only
rplos-0.4.6/rplos/inst/doc/facethighlight.Rmd |only
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rplos-0.4.6/rplos/inst/doc/fulltext.html |only
rplos-0.4.6/rplos/inst/doc/rplos_vignette.Rmd | 385 ++-----
rplos-0.4.6/rplos/inst/doc/rplos_vignette.html | 465 ++++-----
rplos-0.4.6/rplos/inst/schema.xml | 727 +++++++--------
rplos-0.4.6/rplos/inst/vign/facethighlight.Rmd |only
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rplos-0.4.6/rplos/inst/vign/rplos_vignette.md |only
rplos-0.4.6/rplos/man/addmissing.Rd | 3
rplos-0.4.6/rplos/man/check_response.Rd | 3
rplos-0.4.6/rplos/man/concat_todf.Rd | 3
rplos-0.4.6/rplos/man/crossref-defunct.Rd |only
rplos-0.4.6/rplos/man/facetplos.Rd | 7
rplos-0.4.6/rplos/man/formatarticleurl.Rd | 5
rplos-0.4.6/rplos/man/full_text_urls.Rd | 5
rplos-0.4.6/rplos/man/highbrow.Rd | 3
rplos-0.4.6/rplos/man/highplos.Rd | 16
rplos-0.4.6/rplos/man/insertnones.Rd | 3
rplos-0.4.6/rplos/man/isocodes.Rd |only
rplos-0.4.6/rplos/man/journalnamekey.Rd | 3
rplos-0.4.6/rplos/man/plos_fulltext.Rd | 17
rplos-0.4.6/rplos/man/plosabstract.Rd | 59 -
rplos-0.4.6/rplos/man/plosauthor.Rd | 59 -
rplos-0.4.6/rplos/man/plosfields.Rd | 3
rplos-0.4.6/rplos/man/plosfigtabcaps.Rd | 59 -
rplos-0.4.6/rplos/man/plossubject.Rd | 59 -
rplos-0.4.6/rplos/man/plostitle.Rd | 59 -
rplos-0.4.6/rplos/man/plosviews.Rd | 14
rplos-0.4.6/rplos/man/plosword.Rd | 18
rplos-0.4.6/rplos/man/plot_throughtime.Rd | 18
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rplos-0.4.6/rplos/man/rplos.Rd | 50 -
rplos-0.4.6/rplos/man/searchplos.Rd | 79 -
rplos-0.4.6/rplos/tests/testthat/test-check_response.R | 8
rplos-0.4.6/rplos/tests/testthat/test-journalnamekey.R | 9
rplos-0.4.6/rplos/tests/testthat/test-plosabstract.R | 10
rplos-0.4.6/rplos/tests/testthat/test-plosauthor.R | 10
rplos-0.4.6/rplos/tests/testthat/test-plosfigtabcaps.R | 16
rplos-0.4.6/rplos/tests/testthat/test-plossubject.R | 10
rplos-0.4.6/rplos/tests/testthat/test-plostitle.R | 12
rplos-0.4.6/rplos/tests/testthat/test-plosviews.R | 10
rplos-0.4.6/rplos/tests/testthat/test-plosword.R | 6
rplos-0.4.6/rplos/tests/testthat/test-plot_throughtime.R | 8
rplos-0.4.6/rplos/tests/testthat/test-searchplos.R | 28
rplos-0.4.6/rplos/vignettes/facethighlight.Rmd |only
rplos-0.4.6/rplos/vignettes/figure/highbrow.png |only
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rplos-0.4.6/rplos/vignettes/fulltext.Rmd |only
rplos-0.4.6/rplos/vignettes/rplos_vignette.Rmd | 385 ++-----
94 files changed, 1978 insertions(+), 2150 deletions(-)
Title: Miscellaneous Tools for Reproducible Research with R.
Diff between repmis versions 0.3.3 dated 2014-12-10 and 0.4 dated 2015-01-23
Description: The package includes tools to load R packages
and automatically generate BibTeX files citing them as well as load
plain-text and Excel formatted data stored on Dropbox, GitHub, and from
other sources.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud
DESCRIPTION | 21 ++++---
MD5 | 30 +++++-----
NAMESPACE | 3 -
NEWS | 7 ++
R/LoadandCite.R | 110 +++++++++++++++++++--------------------
R/source_DropboxData.R | 128 +++++++++++++++++++++++-----------------------
R/source_XlsxData.R | 9 +--
R/source_data.R | 28 +++++-----
README.md | 4 -
man/InstallOldPackages.Rd | 3 -
man/LoadandCite.Rd | 3 -
man/git_stamp.Rd | 3 -
man/scan_https.Rd | 3 -
man/source_DropboxData.Rd | 11 ++-
man/source_XlsxData.Rd | 3 -
man/source_data.Rd | 18 ++----
16 files changed, 202 insertions(+), 182 deletions(-)
Title: Reverse correlation image classification toolbox
Diff between rcicr versions 0.2.6 dated 2014-12-19 and 0.3.0 dated 2015-01-23
Description: Functions to generate stimuli and analyze data of reverse correlation image classification experiments.
Author: Ron Dotsch
Maintainer: Ron Dotsch
ChangeLog | 5 +++++
DESCRIPTION | 10 +++++-----
MD5 | 14 +++++++-------
R/rcicr.R | 19 +++++++++++++------
R/rcicr_2IFC.R | 13 +++++++------
man/generateCI.Rd | 2 +-
man/generateNoiseImage.Rd | 4 ++--
man/generateNoisePattern.Rd | 4 +++-
8 files changed, 43 insertions(+), 28 deletions(-)
Title: Power and Sample Size Based on Two One-sided t-Tests (TOST) for
(Bio)Equivalence Studies
Diff between PowerTOST versions 1.2-05 dated 2015-01-06 and 1.2-06 dated 2015-01-23
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits based on simulations.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / samplesize estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [ctb]
Maintainer: Detlew Labes
PowerTOST-1.2-05/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V07.pdf |only
PowerTOST-1.2-05/PowerTOST/inst/doc/Implementation_scaledABE_simsV0.07.pdf |only
PowerTOST-1.2-05/PowerTOST/man/power2.TOST.Rd |only
PowerTOST-1.2-06/PowerTOST/DESCRIPTION | 8
PowerTOST-1.2-06/PowerTOST/MD5 | 67 +++-----
PowerTOST-1.2-06/PowerTOST/NEWS | 15 +
PowerTOST-1.2-06/PowerTOST/R/BE_CI.R | 1
PowerTOST-1.2-06/PowerTOST/R/OwensQ.R | 2
PowerTOST-1.2-06/PowerTOST/R/SampleSize.R | 63 +++----
PowerTOST-1.2-06/PowerTOST/R/SampleSize_doseprop.R | 1
PowerTOST-1.2-06/PowerTOST/R/SampleSize_noninf.R | 9 -
PowerTOST-1.2-06/PowerTOST/R/expSampleSize.R | 9 -
PowerTOST-1.2-06/PowerTOST/R/expSampleSize_noninf.R | 4
PowerTOST-1.2-06/PowerTOST/R/exppower.R | 12 -
PowerTOST-1.2-06/PowerTOST/R/exppower_noninf.R | 9 -
PowerTOST-1.2-06/PowerTOST/R/helper_dp.R | 1
PowerTOST-1.2-06/PowerTOST/R/pa.ABE.R | 15 -
PowerTOST-1.2-06/PowerTOST/R/pa.NTID.R | 6
PowerTOST-1.2-06/PowerTOST/R/pa.scABE.R | 2
PowerTOST-1.2-06/PowerTOST/R/power.R | 83 +++++-----
PowerTOST-1.2-06/PowerTOST/R/power2.R | 66 -------
PowerTOST-1.2-06/PowerTOST/R/power_RSABE.R | 1
PowerTOST-1.2-06/PowerTOST/R/power_doseprop.R | 7
PowerTOST-1.2-06/PowerTOST/R/power_noninf.R | 6
PowerTOST-1.2-06/PowerTOST/R/pwrA_S3methods.R | 3
PowerTOST-1.2-06/PowerTOST/inst/doc/BE_power_sample_size_excerpt.pdf |only
PowerTOST-1.2-06/PowerTOST/inst/doc/Implementation_scaledABE_sims.pdf |only
PowerTOST-1.2-06/PowerTOST/inst/tests/test_2x2.R | 2
PowerTOST-1.2-06/PowerTOST/inst/tests/test_2x2x3.R | 2
PowerTOST-1.2-06/PowerTOST/inst/tests/test_2x4x2.R | 2
PowerTOST-1.2-06/PowerTOST/inst/tests/test_2x4x4.R | 2
PowerTOST-1.2-06/PowerTOST/inst/tests/test_RatioF.R | 2
PowerTOST-1.2-06/PowerTOST/inst/tests/test_parallel.R | 6
PowerTOST-1.2-06/PowerTOST/man/exppower.TOST.Rd | 11 -
PowerTOST-1.2-06/PowerTOST/man/power.RatioF.Rd | 4
PowerTOST-1.2-06/PowerTOST/man/power.TOST.Rd | 53 ++++--
PowerTOST-1.2-06/PowerTOST/man/sampleN.TOST.Rd | 20 +-
37 files changed, 235 insertions(+), 259 deletions(-)
Title: Power and Sample-size Distribution of 2-stage Bioequivalence
Studies
Diff between Power2Stage versions 0.2-2 dated 2014-12-08 and 0.3-1 dated 2015-01-23
Description: - Contains a function to calculate power and sample-size distribution
of 2-stage bioequivalence (BE) studies with a 2x2 crossover design
according to Potvin et al. / Montague et al. modified to include a
futility Nmax and modified to do the sample size estimation step
with PE and mse of stage 1.
- Contains further a function with the modifications according to
Karalis & Macheras which use PE and mse from stage 1 also for the
power monitoring steps.
- The third function power.2stage.fC() calculates power and sample
size distribution of 2-stage BE studies with a futility criterion
for the point estimator or CI of T/R from stage 1.
- The fourth function power.2stage.GS() calculates power of non-adaptive
group sequential (2-stage) BE studies.
- The fifth function power.2stage.p() calculates power and sample size
distribution of 2-stage BE studies with 2 parallel groups.
- Another function power.2stage.ssr() allows the power calculation
for 2-stage studies with (blinded) interim sample size re-estimation.
All the functions use simulations to obtain their results.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes
DESCRIPTION | 8 -
MD5 | 35 ++++---
NAMESPACE | 1
NEWS | 13 ++
R/power.R | 87 +++++++++---------
R/power_2stage.R | 60 ++++++------
R/power_2stage_GS.R | 1
R/power_2stage_KM.R | 52 ++++++----
R/power_2stage_SSR.R | 44 ++++-----
R/power_2stage_fC.R | 62 +++++++------
R/power_2stage_parallel.R | 204 ++++++++++++++++++++++++++++---------------
R/power_2stage_parallel_AF.R |only
R/sampsiz.R | 140 +++--------------------------
R/sampsiz2.R |only
R/sampsiz_n0.R |only
man/power.2stage.KM.Rd | 6 -
man/power.2stage.Rd | 11 --
man/power.2stage.fC.Rd | 13 --
man/power.2stage.p.Rd | 55 +++++++----
man/power.2stage.ssr.Rd | 10 +-
20 files changed, 398 insertions(+), 404 deletions(-)
Title: Vectorized Bivariate Normal CDF
Diff between pbivnorm versions 0.5-1 dated 2012-10-31 and 0.6.0 dated 2015-01-23
Description: Provides a vectorized R function for calculating
probabilities from a standard bivariate normal CDF.
Author: Fortran code by Alan Genz. R code by Brenton Kenkel,
based on Adelchi Azzalini's 'mnormt' package.
Maintainer: Brenton Kenkel
DESCRIPTION | 17 ++++++------
MD5 | 9 +++---
NEWS | 8 +++++
R/pbivnorm.r | 32 +++++++++++++----------
README.md |only
man/pbivnorm.Rd | 77 ++++++++++++++++++++++++++++++++++----------------------
6 files changed, 88 insertions(+), 55 deletions(-)
Title: Fitting user specified models with Group Lasso penalty
Diff between grplasso versions 0.4-4 dated 2014-08-18 and 0.4-5 dated 2015-01-23
Description: Fits user specified (GLM-) models with Group Lasso penalty
Author: Lukas Meier
Maintainer: Lukas Meier
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/methods.R | 22 ++++++++++++++++++----
tests/test_grplasso.R | 7 ++++++-
4 files changed, 31 insertions(+), 12 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Diff between geostatsp versions 1.1.8 dated 2015-01-05 and 1.1.9 dated 2015-01-23
Description: Geostatistical modelling facilities using Raster and SpatialPoints objects are provided. Non-Gaussian models are fit using INLA, and Gaussian geostatistical models use Maximum Likelihood Estimation..
Author: Patrick Brown
Maintainer: Patrick Brown
DESCRIPTION | 15 +-
MD5 | 93 +++++++-------
R/0gm.R | 122 +++---------------
R/RFsimulate.R | 273 ++++++++++++++++++++++++-----------------
R/glgm.R | 135 +++++++++++---------
R/informationLgm.R | 14 +-
R/krige.R | 22 +--
R/lgm.R | 147 +++++++++++++---------
R/lgm.Raster.R | 20 +--
R/loglikGmrf.R | 94 ++++++--------
R/loglikLgm.R | 205 +++++++++++++++++--------------
R/matern.R | 221 ++++++++++++++++++---------------
R/maternCholSolve.R |only
R/maternGmrfPrec.R | 31 ----
R/spatialRoc.R | 34 ++---
data/gambiaUTM.RData |binary
data/loaloa.RData |binary
data/murder.RData |binary
data/nn32.RData |binary
data/rongelapUTM.RData |binary
data/swissRain.RData |binary
data/swissRainR.RData |binary
data/torontoPop.RData |binary
data/wheat.RData |binary
inst |only
man/RFsimulate.Rd | 43 +-----
man/glgm.Rd | 38 ++---
man/krige.Rd | 15 +-
man/lgm.Rd | 38 ++---
man/likfitLgm.Rd | 35 +++--
man/matern.Rd | 95 +++++++++-----
man/maternGmrfPrec.Rd | 9 -
man/simLgcp.Rd | 4
man/swissRain.Rd | 15 +-
src/Makevars | 2
src/geostatsp.h |only
src/matern.c | 323 +++++++++++++++++++++++++++++++++----------------
src/maternLogL.c |only
src/maternLogLgr.c |only
tests/RFsimulate.R | 56 ++++----
tests/glgm.R | 8 -
tests/krige.R | 35 -----
tests/lgcp.R | 4
tests/lgm.R | 67 +++-------
tests/lgmRaster.R | 18 +-
tests/likfitLgm.R | 64 ++-------
tests/matern.R | 10 -
tests/maternGmrfPrec.R | 6
tests/profLlgm.R | 31 ++--
tests/simLgcp.R | 34 ++---
50 files changed, 1246 insertions(+), 1130 deletions(-)
Title: Graph Estimation Based on Birth-Death MCMC Approach
Diff between BDgraph versions 2.14 dated 2014-12-19 and 2.15 dated 2015-01-23
Description: This package provides a general framework to perform Bayesian structure learning in undirected graphical models. The package provides recent improvements in the Bayesian literature. The package consists of two main MCMC sampling algorithm efficiently implemented in C++ to maximize computational speed. The main target of the package is high-dimensional data analysis wherein either continuous or discrete variables and usually number of variables are less than number of observations. Acknowledgements: The help of the CRAN team to integrate C++ code with R is gratefully acknowledged.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi
DESCRIPTION | 10 ++----
MD5 | 62 +++++++++++++++++++++---------------------
R/bdgraph.R | 12 ++++----
R/bdgraph.sim.R | 6 ++--
R/plotcoda.R | 12 ++++----
R/plotroc.R | 8 ++---
R/rgwish.R | 11 ++++++-
R/rwish.R | 2 -
R/select.R | 6 ++--
R/traceplot.R | 29 ++++++++++---------
man/BDgraph-package.Rd | 56 +++++++++++++++-----------------------
man/CellSignal.Rd | 2 -
man/I.g.Rd | 37 +++++++++++--------------
man/bdgraph.Rd | 52 ++++++++++++++++++-----------------
man/bdgraph.npn.Rd | 58 +++++++++++++++++----------------------
man/bdgraph.sim.Rd | 72 ++++++++++++++++++++++++++-----------------------
man/compare.Rd | 51 +++++++++++++++++-----------------
man/geneExpression.Rd | 4 +-
man/phat.Rd | 32 ++++++++++++---------
man/plot.bdgraph.Rd | 27 ++++++++++--------
man/plot.simulate.Rd | 22 ++++++++------
man/plotcoda.Rd | 18 ++++++++----
man/plotroc.Rd | 31 +++++++++++++--------
man/print.bdgraph.Rd | 26 +++++++++++------
man/print.simulate.Rd | 31 ++++++++++-----------
man/prob.Rd | 26 ++++++++++-------
man/rgwish.Rd | 27 ++++++++++--------
man/rwish.Rd | 19 ++++++++----
man/select.Rd | 24 ++++++++++------
man/summary.bdgraph.Rd | 27 +++++++++++++-----
man/surveyData.Rd | 22 +++++++++-----
man/traceplot.Rd | 22 ++++++++++----
32 files changed, 461 insertions(+), 383 deletions(-)
Title: Rmetrics - Financial Time Series Objects
Diff between timeSeries versions 3011.98 dated 2014-10-28 and 3012.99 dated 2015-01-23
Description: Environment for teaching
"Financial Engineering and Computational Finance".
Managing financial time series objects.
Author: Rmetrics Core Team,
Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz
DESCRIPTION | 9
MD5 | 16
R/methods-plot.R | 850 ++++++++++++++--------------
R/methods-plot2.R | 1186 +++++++++++++++++++---------------------
R/statistics-orderColnames.R | 5
build/vignette.rds |binary
inst/doc/timeSeriesPlot.pdf |binary
inst/unitTests/Makefile | 3
man/statistics-orderColnames.Rd | 260 ++++----
9 files changed, 1163 insertions(+), 1166 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Diff between timeDate versions 3011.99 dated 2014-10-27 and 3012.100 dated 2015-01-23
Description: Environment for teaching
"Financial Engineering and Computational Finance".
Managing chronological and calendar objects.
Author: Rmetrics Core Team,
Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb],
Martin Maechler [ctb],
Joe W. Byers [ctb]
Maintainer: Tobias Setz
DESCRIPTION | 9 +++++----
MD5 | 4 ++--
R/timeDate.R | 1 +
3 files changed, 8 insertions(+), 6 deletions(-)
Title: Graphical Integrated Text Mining Solution
Diff between RcmdrPlugin.temis versions 0.7.2 dated 2014-09-06 and 0.7.3 dated 2015-01-23
More information about RcmdrPlugin.temis at CRAN
Description: An R Commander plug-in providing an integrated solution to perform
a series of text mining tasks such as importing and cleaning a corpus, and
analyses like terms and documents counts, vocabulary tables, terms
co-occurrences and documents similarity measures, time series analysis,
correspondence analysis and hierarchical clustering. Corpora can be imported
from spreadsheet-like files, directories of raw text files, Twitter queries,
as well as from Dow Jones Factiva, LexisNexis, Europresse and Alceste files.
Author: Milan Bouchet-Valat [aut, cre],
Gilles Bastin [aut]
Maintainer: Milan Bouchet-Valat
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
NAMESPACE | 1 +
NEWS | 4 ++++
R/corpusCa.R | 2 +-
R/importCorpus.R | 18 ++++++++----------
R/output.R | 12 ++++++++++--
R/tablelist.R | 2 +-
man/importCorpusDlg.rd | 2 +-
9 files changed, 38 insertions(+), 27 deletions(-)
Permanent link
Title: Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Diff between evmix versions 2.3 dated 2014-09-07 and 2.4 dated 2015-01-23
Description: The usual distribution functions, maximum likelihood inference and
model diagnostics for univariate stationary extreme value mixture models
are provided. Kernel density estimation including various boundary
corrected kernel density estimation methods and a wide choice of kernels,
with cross-validation likelihood based bandwidth estimator.
Reasonable consistency with the base functions in the evd package is
provided, so that users can safely interchange most code.
Author: Carl Scarrott and Yang Hu, University of Canterbury
Maintainer: Carl Scarrott
DESCRIPTION | 10
MD5 | 296 +++++++++++++------------
NAMESPACE | 27 ++
R/checking.r | 577 +++++++++++++++++++++++++++++++++-----------------
R/dbckden.r | 105 ++-------
R/dbckdengpd.r | 165 +++++---------
R/dbckdengpdcon.r | 174 +++++----------
R/dbetagpd.r | 74 +++---
R/dbetagpdcon.r | 75 +++---
R/ddwm.r | 78 +++---
R/dgammagpd.r | 65 ++---
R/dgammagpdcon.r | 66 +++--
R/dgkg.r | 128 +++--------
R/dgkgcon.r | 112 +++------
R/dgng.r | 94 +++-----
R/dgngcon.r | 91 +++----
R/dgpd.r | 64 ++---
R/dhpd.r | 58 ++---
R/dhpdcon.r | 60 ++---
R/ditmgng.r | 113 ++++-----
R/ditmnormgpd.r | 78 +++---
R/ditmweibullgpd.r | 78 +++---
R/dkden.r | 55 +---
R/dkdengpd.r | 85 ++-----
R/dkdengpdcon.r | 83 ++-----
R/dlognormgpd.r | 65 ++---
R/dlognormgpdcon.r | 66 +++--
R/dmgamma.r | 105 ++++-----
R/dmgammagpd.r | 146 +++++-------
R/dmgammagpdcon.r | 142 +++++-------
R/dnormgpd.r | 65 ++---
R/dnormgpdcon.r | 65 +++--
R/dpsden.r |only
R/dpsdengpd.r |only
R/dweibullgpd.r | 65 ++---
R/dweibullgpdcon.r | 67 +++--
R/evmix-package.r | 3
R/evmixdiag.r | 137 +++--------
R/fbckden.r | 62 ++---
R/fbckdengpd.r | 176 ++++++++-------
R/fbckdengpdcon.r | 171 ++++++++------
R/fbetagpd.r | 144 +++++++-----
R/fbetagpdcon.r | 140 +++++++-----
R/fdwm.r | 77 +++---
R/fgammagpd.r | 116 +++++-----
R/fgammagpdcon.r | 113 +++++----
R/fgkg.r | 121 ++++++----
R/fgkgcon.r | 117 ++++++----
R/fgng.r | 130 +++++++----
R/fgngcon.r | 122 +++++++---
R/fgpd.r | 109 +++++----
R/fhpd.r | 75 +++---
R/fhpdcon.r | 79 ++++--
R/fitmgng.r | 119 +++++-----
R/fitmnormgpd.r | 135 ++++++-----
R/fitmweibullgpd.r | 134 +++++++----
R/fkden.r | 48 ++--
R/fkdengpd.r | 120 ++++++----
R/fkdengpdcon.r | 123 ++++++----
R/flognormgpd.r | 116 +++++-----
R/flognormgpdcon.r | 113 +++++----
R/fmgamma.r | 61 +++--
R/fmgammagpd.r | 98 ++++----
R/fmgammagpdcon.r | 113 +++++----
R/fnormgpd.r | 136 ++++++-----
R/fnormgpdcon.r | 121 ++++++----
R/fpsden.r |only
R/fpsdengpd.r |only
R/fweibullgpd.r | 116 +++++-----
R/fweibullgpdcon.r | 113 +++++----
R/hillplot.r | 61 ++---
R/kernels.r | 22 +
R/kfun.r | 18 -
R/mrlplot.r | 51 +---
R/pickandsplot.r | 35 +--
R/tcplot.r | 114 ++++-----
R/undocumented.r | 36 ++-
inst/CITATION | 2
inst/doc/Rd2.pdf |binary
man/bckden.Rd | 36 +--
man/bckdengpd.Rd | 33 +-
man/bckdengpdcon.Rd | 17 +
man/betagpd.Rd | 15 -
man/betagpdcon.Rd | 7
man/checking.Rd | 81 ++++---
man/dwm.Rd | 17 -
man/evmix-package.Rd | 3
man/evmix.diag.Rd | 14 -
man/fbckden.Rd | 45 ++-
man/fbckdengpd.Rd | 94 ++++----
man/fbckdengpdcon.Rd | 62 ++---
man/fbetagpd.Rd | 69 +++--
man/fbetagpdcon.Rd | 54 ++--
man/fdwm.Rd | 63 +++--
man/fgammagpd.Rd | 60 ++---
man/fgammagpdcon.Rd | 46 ++-
man/fgkg.Rd | 75 +++---
man/fgkgcon.Rd | 27 +-
man/fgng.Rd | 67 +++--
man/fgngcon.Rd | 27 +-
man/fgpd.Rd | 68 +++--
man/fhpd.Rd | 60 ++---
man/fhpdcon.Rd | 33 +-
man/fitmgng.Rd | 70 +++---
man/fitmnormgpd.Rd | 80 +++---
man/fitmweibullgpd.Rd | 62 +++--
man/fkden.Rd | 32 +-
man/fkdengpd.Rd | 78 +++---
man/fkdengpdcon.Rd | 56 ++--
man/flognormgpd.Rd | 60 ++---
man/flognormgpdcon.Rd | 46 ++-
man/fmgamma.Rd | 30 +-
man/fmgammagpd.Rd | 36 +--
man/fmgammagpdcon.Rd | 36 +--
man/fnormgpd.Rd | 79 +++---
man/fnormgpdcon.Rd | 46 ++-
man/fpsden.Rd |only
man/fpsdengpd.Rd |only
man/fweibullgpd.Rd | 54 ++--
man/fweibullgpdcon.Rd | 46 ++-
man/gammagpd.Rd | 15 -
man/gammagpdcon.Rd | 7
man/gkg.Rd | 28 +-
man/gkgcon.Rd | 16 -
man/gng.Rd | 19 -
man/gngcon.Rd | 7
man/gpd.Rd | 26 +-
man/hillplot.Rd | 11
man/hpd.Rd | 9
man/hpdcon.Rd | 9
man/internal.Rd | 19 +
man/itmgng.Rd | 22 +
man/itmnormgpd.Rd | 11
man/itmweibullgpd.Rd | 15 -
man/kden.Rd | 34 +-
man/kdengpd.Rd | 32 +-
man/kdengpdcon.Rd | 16 -
man/kernels.Rd | 9
man/kfun.Rd | 11
man/lognormgpd.Rd | 15 -
man/lognormgpdcon.Rd | 7
man/mgamma.Rd | 17 +
man/mgammagpd.Rd | 13 -
man/mgammagpdcon.Rd | 9
man/mrlplot.Rd | 17 -
man/normgpd.Rd | 15 -
man/normgpdcon.Rd | 7
man/pickandsplot.Rd | 5
man/psden.Rd |only
man/psdengpd.Rd |only
man/tcplot.Rd | 30 +-
man/weibullgpd.Rd | 11
man/weibullgpdcon.Rd | 15 -
153 files changed, 5415 insertions(+), 4440 deletions(-)
Title: Descriptive analysis by groups
Diff between compareGroups versions 2.0.5 dated 2014-08-28 and 3.0 dated 2015-01-23
Description: This package is designed to read, interpret, summarise, display and
analyse epidemiological data. Can be used to create data summaries for
quality control, extensive reports for exploring data, including
publication-ready univariate or bivariate tables in plain text HTML and
LaTeX, and a figures to quickly visualise the distribution of your data.
Depending on the nature of the variable, various statistics are
calculated (mean, median, frequencies, incidences) and appropriate
tests are performed (t-test, Analysis of variance, Kruskal-Wallis, Fisher,
log-rank, ...). The latest version includes functionality for summarising
genetic data, and for performing low-level quality control of your database
(see radiograph()) to help identify data-entry errors. This version has
also been implemented in a web-interface to make this package accessible
to non-R-users.
Author: Isaac Subirana, Joan Vila, Héctor Sanz, Gavin Lucas, Judith Peñafiel
and David Giménez
Maintainer: Isaac Subirana
compareGroups-2.0.5/compareGroups/data/SNPs.rda |only
compareGroups-2.0.5/compareGroups/man/SNPs.Rd |only
compareGroups-3.0/compareGroups/DESCRIPTION | 14
compareGroups-3.0/compareGroups/MD5 | 106
compareGroups-3.0/compareGroups/NAMESPACE | 5
compareGroups-3.0/compareGroups/R/cGroupsGUI.R | 179
compareGroups-3.0/compareGroups/R/cGroupsWUI.R |only
compareGroups-3.0/compareGroups/R/compare.i.R | 2
compareGroups-3.0/compareGroups/R/createTable.R | 2
compareGroups-3.0/compareGroups/R/export2csv.R | 15
compareGroups-3.0/compareGroups/R/export2html.R | 38
compareGroups-3.0/compareGroups/R/export2latex.cbind.createTable.R | 26
compareGroups-3.0/compareGroups/R/export2latex.createTable.R | 24
compareGroups-3.0/compareGroups/R/export2pdf.R | 9
compareGroups-3.0/compareGroups/R/getResults.R |only
compareGroups-3.0/compareGroups/R/prepare.r | 40
compareGroups-3.0/compareGroups/R/print.cbind.createTable.R | 29
compareGroups-3.0/compareGroups/R/print.createTable.R | 16
compareGroups-3.0/compareGroups/R/printTable.R | 2
compareGroups-3.0/compareGroups/R/report.R | 7
compareGroups-3.0/compareGroups/R/table.i.R | 4
compareGroups-3.0/compareGroups/build/vignette.rds |binary
compareGroups-3.0/compareGroups/inst/app |only
compareGroups-3.0/compareGroups/inst/doc/changelog | 18
compareGroups-3.0/compareGroups/inst/doc/compareGroupsWUI_vignette.pdf |only
compareGroups-3.0/compareGroups/inst/doc/compareGroups_vignette.R | 219
compareGroups-3.0/compareGroups/inst/doc/compareGroups_vignette.pdf | 5363 +++++-----
compareGroups-3.0/compareGroups/inst/doc/compareGroups_vignette.rnw | 90
compareGroups-3.0/compareGroups/man/cGroupsGUI.Rd | 2
compareGroups-3.0/compareGroups/man/cGroupsWUI.Rd |only
compareGroups-3.0/compareGroups/man/compareGroups-internal.Rd | 3
compareGroups-3.0/compareGroups/man/compareGroups-package.Rd | 16
compareGroups-3.0/compareGroups/man/createTable.Rd | 11
compareGroups-3.0/compareGroups/man/export2csv.Rd | 8
compareGroups-3.0/compareGroups/man/export2html.Rd | 8
compareGroups-3.0/compareGroups/man/export2latex.Rd | 14
compareGroups-3.0/compareGroups/man/export2pdf.Rd | 130
compareGroups-3.0/compareGroups/man/getResults.Rd |only
compareGroups-3.0/compareGroups/man/missingTable.rd | 22
compareGroups-3.0/compareGroups/man/report.Rd | 8
compareGroups-3.0/compareGroups/vignettes/compareGroupsWUI_vignette.pdf |only
compareGroups-3.0/compareGroups/vignettes/compareGroupsWUI_vignette.tex |only
compareGroups-3.0/compareGroups/vignettes/compareGroups_vignette.bib | 36
compareGroups-3.0/compareGroups/vignettes/compareGroups_vignette.rnw | 90
compareGroups-3.0/compareGroups/vignettes/figures/WUI |only
compareGroups-3.0/compareGroups/vignettes/figures/bivar/age.pdf |binary
compareGroups-3.0/compareGroups/vignettes/figures/bivar/sex.pdf |binary
compareGroups-3.0/compareGroups/vignettes/figures/bivar/tmain.pdf |binary
compareGroups-3.0/compareGroups/vignettes/figures/univar/age.pdf |binary
compareGroups-3.0/compareGroups/vignettes/figures/univar/sex.pdf |binary
compareGroups-3.0/compareGroups/vignettes/figures/univar/tmain.pdf |binary
51 files changed, 3394 insertions(+), 3162 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Diff between bnlearn versions 3.7 dated 2015-01-13 and 3.7.1 dated 2015-01-23
Description: Bayesian network structure learning, parameter learning and
inference.
This package implements constraint-based (GS, IAMB, Inter-IAMB, Fast-IAMB,
MMPC, Hiton-PC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing
and Tabu Search) and hybrid (MMHC and RSMAX2) structure learning algorithms
for discrete, Gaussian and conditional Gaussian networks, along with many
score functions and conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are
also implemented.
Some utility functions (model comparison and manipulation, random data
generation, arc orientation testing, simple and advanced plots) are
included, as well as support for parameter estimation (maximum likelihood
and Bayesian) and inference, conditional probability queries and
cross-validation. Development snapshots with the latest bugfixes are
available from www.bnlearn.com.
Author: Marco Scutari
Maintainer: Marco Scutari
Changelog | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
man/bnlearn-package.Rd | 4 ++--
src/graph.generation.c | 2 +-
src/loss.c | 2 +-
6 files changed, 17 insertions(+), 13 deletions(-)
Title: Coclustering package for binary, contingency, continuous and
categorical data-sets
Diff between blockcluster versions 3.0.1 dated 2014-01-16 and 3.0.2 dated 2015-01-23
Description: Simultaneous clustering of rows and columns, usually designated by
biclustering, co-clustering or block clustering, is an important technique
in two way data analysis. It consists of estimating a mixture model which
takes into account the block clustering problem on both the individual and
variables sets. The blockcluster package provides a bridge between the C++
core library and the R statistical computing environment. This package
allows to co-cluster binary, contingency, continuous and categorical
data-sets. It also provides utility functions to visualize the results.
This package may be useful for various applications in fields of Data
mining,Information retrieval, Biology, computer vision and many more. More
information about the project and comprehensive tutorial can be found on
the link mentioned in URL.
Author: Parmeet Singh Bhatia
Maintainer: Vincent KUBICKI
DESCRIPTION | 16 +++++++---------
MD5 | 29 +++++++++++++++--------------
build/vignette.rds |binary
data/binarydata.rda |binary
data/categoricaldata.rda |binary
data/contingencydatalist.rda |binary
data/contingencydataunknown.rda |binary
data/gaussiandata.rda |binary
src/Makevars | 1 -
src/Makevars.win | 1 -
src/coclust/makefile | 1 +
src/coclust/src/Models/BinaryLBModel.cpp | 2 ++
src/coclust/src/Strategy/XStrategyAlgo.cpp | 23 +++++++++++++++++++++++
src/coclust/src/Strategy/XStrategyAlgo.h | 2 ++
src/test |only
vignettes/blockcluster_tutorial_V3.0.Rnw | 3 ++-
16 files changed, 52 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-02 1.1-0
2009-03-25 1.0-6
2009-01-07 1.0-5
2008-03-21 1.0
Title: Logic Regression
Diff between LogicReg versions 1.5.5 dated 2013-12-03 and 1.5.6 dated 2015-01-23
Description: Routines for Logic Regression
Author: Charles Kooperberg
Maintainer: Charles Kooperberg
DESCRIPTION | 12 ++++++------
MD5 | 4 ++--
src/slogic.f | 3 ++-
3 files changed, 10 insertions(+), 9 deletions(-)
Title: Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Diff between hysteresis versions 2.0 dated 2013-11-19 and 2.5 dated 2015-01-23
Description: Fit, summarize and plot sinusoidal hysteretic processes using:
two-step simple harmonic least squares, ellipse-specific non-linear least
squares, the direct method, geometric least squares or linear least squares.
Author: Spencer Maynes, Fan Yang, and Anne Parkhurst
Maintainer: Anne Parkhurst
hysteresis-2.0/hysteresis/R/coef.splitloop.R |only
hysteresis-2.0/hysteresis/R/fitted.splitloop.R |only
hysteresis-2.0/hysteresis/R/floopSplit.R |only
hysteresis-2.0/hysteresis/R/plot.splitloop.R |only
hysteresis-2.0/hysteresis/R/print.splitloop.R |only
hysteresis-2.0/hysteresis/R/residuals.splitloop.R |only
hysteresis-2.0/hysteresis/R/rstudent.splitloop.R |only
hysteresis-2.0/hysteresis/man/plot.ellipsefit.Rd |only
hysteresis-2.0/hysteresis/man/residuals.ellipsefit.Rd |only
hysteresis-2.0/hysteresis/man/summary.ellipsefit.Rd |only
hysteresis-2.5/hysteresis/DESCRIPTION | 10
hysteresis-2.5/hysteresis/MD5 | 174 ++-
hysteresis-2.5/hysteresis/NAMESPACE | 33
hysteresis-2.5/hysteresis/NEWS | 7
hysteresis-2.5/hysteresis/R/coef.fittedlooplist2r.R |only
hysteresis-2.5/hysteresis/R/coef.loop2r.R |only
hysteresis-2.5/hysteresis/R/coef.loop2rsummary.R |only
hysteresis-2.5/hysteresis/R/coef.loopsummarylist2r.R |only
hysteresis-2.5/hysteresis/R/delta.error.R | 13
hysteresis-2.5/hysteresis/R/delta.error.loop.R | 20
hysteresis-2.5/hysteresis/R/delta.error.loop2r.R |only
hysteresis-2.5/hysteresis/R/derived.2.r | 3
hysteresis-2.5/hysteresis/R/directsummary.R | 2
hysteresis-2.5/hysteresis/R/ellipsespot.R | 2
hysteresis-2.5/hysteresis/R/fel.R | 4
hysteresis-2.5/hysteresis/R/fel.geometric.R | 2
hysteresis-2.5/hysteresis/R/felReflect.R |only
hysteresis-2.5/hysteresis/R/fitted.fittedlooplist2r.R |only
hysteresis-2.5/hysteresis/R/fitted.loop2r.R |only
hysteresis-2.5/hysteresis/R/fitted.loop2rsummary.R |only
hysteresis-2.5/hysteresis/R/fitted.loopsummarylist.R | 14
hysteresis-2.5/hysteresis/R/floop.R | 74 +
hysteresis-2.5/hysteresis/R/floop.repeated.R | 2
hysteresis-2.5/hysteresis/R/floop2r.R |only
hysteresis-2.5/hysteresis/R/floop2r.repeated.R |only
hysteresis-2.5/hysteresis/R/floopCauchyLoss.R |only
hysteresis-2.5/hysteresis/R/floopCauchyLoss2r.R |only
hysteresis-2.5/hysteresis/R/floopReflect.R |only
hysteresis-2.5/hysteresis/R/geometric_distance.R | 20
hysteresis-2.5/hysteresis/R/geometricboot.R | 2
hysteresis-2.5/hysteresis/R/geometricsummary.R | 4
hysteresis-2.5/hysteresis/R/harmonic2summary.R | 16
hysteresis-2.5/hysteresis/R/harmonic2summaryEBS.r |only
hysteresis-2.5/hysteresis/R/lmsummary.R | 2
hysteresis-2.5/hysteresis/R/loopbootgeom.R |only
hysteresis-2.5/hysteresis/R/mel.r | 3
hysteresis-2.5/hysteresis/R/mloop.r | 3
hysteresis-2.5/hysteresis/R/mloop2r.R |only
hysteresis-2.5/hysteresis/R/nlssummary.R | 2
hysteresis-2.5/hysteresis/R/plot.ellipsefit.R | 31
hysteresis-2.5/hysteresis/R/plot.ellipsefitlist.R | 2
hysteresis-2.5/hysteresis/R/plot.ellipsesummary.R | 36
hysteresis-2.5/hysteresis/R/plot.fittedloop.R | 34
hysteresis-2.5/hysteresis/R/plot.fittedlooplist.R | 11
hysteresis-2.5/hysteresis/R/plot.loop2r.R |only
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