Sat, 24 Jan 2015

Package CensRegMod updated to version 1.0 with previous version 0.0 dated 2012-07-12

Title: Fits Normal and Student-t Censored Regression Model
Description: Fits univariate censored linear regression model under Normal or Student-t distribution
Author: Monique Bettio Massuia , Larissa Avila Matos and Victor Lachos
Maintainer: Monique Bettio Massuia

Diff between CensRegMod versions 0.0 dated 2012-07-12 and 1.0 dated 2015-01-24

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Package webutils updated to version 0.3 with previous version 0.2 dated 2014-10-30

Title: Utility Functions for Web Applications
Description: Utility functions for developing web applications. Includes parsers for application/x-www-form-urlencoded as well as multipart/form-data and examples of using the parser with either httpuv or rhttpd.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms

Diff between webutils versions 0.2 dated 2014-10-30 and 0.3 dated 2015-01-24

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Package NLP updated to version 0.1-6 with previous version 0.1-5 dated 2014-08-23

Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

Diff between NLP versions 0.1-5 dated 2014-08-23 and 0.1-6 dated 2015-01-24

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Package ISOcodes updated to version 2015.01.24 with previous version 2014.03.24 dated 2014-03-24

Title: Selected ISO codes
Description: ISO language, territory, currency, script and character codes. Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta [aut], Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

Diff between ISOcodes versions 2014.03.24 dated 2014-03-24 and 2015.01.24 dated 2015-01-24

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Package dfmta updated to version 1.1-2 with previous version 1.1-0 dated 2015-01-12

Title: Phase I/II Adaptive Dose-Finding Design For MTA
Description: Phase I/II adaptive dose-finding design for single-agent Molecularly Targeted Agent (MTA), according to the paper "Phase I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau Determination using Adaptive Randomization".
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere

Diff between dfmta versions 1.1-0 dated 2015-01-12 and 1.1-2 dated 2015-01-24

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Package rlist updated to version 0.4 with previous version 0.3-2 dated 2014-08-22

Title: A Toolbox for Non-tabular Data Manipulation
Description: Provides a set of functions for data manipulation with list objects, including mapping, filtering, grouping, sorting, updating, searching, and other useful functions. Most functions are designed to be pipeline friendly so that data processing with lists can be chained.
Author: Kun Ren
Maintainer: Kun Ren

Diff between rlist versions 0.3-2 dated 2014-08-22 and 0.4 dated 2015-01-24

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Package RcppGSL updated to version 0.2.4 with previous version 0.2.3 dated 2015-01-12

Title: Rcpp Integration for GNU GSL Vectors and Matrices
Description: Rcpp integration for GNU GSL vectors and matrices The GNU Scientific Library (GSL) is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines such as special functions, permutations, combinations, fast fourier transforms, eigensystems, random numbers, quadrature, random distributions, quasi-random sequences, Monte Carlo integration, N-tuples, differential equations, simulated annealing, numerical differentiation, interpolation, series acceleration, Chebyshev approximations, root-finding, discrete Hankel transforms physical constants, basis splines and wavelets. There are over 1000 functions in total with an extensive test suite. The RcppGSL package provides an easy-to-use interface between GSL data structures and R using concepts from Rcpp which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses Rcpp to connect to another third-party library. The autoconf script, inline plugin and example package can all be used as a stanza to write a similar package against another library.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between RcppGSL versions 0.2.3 dated 2015-01-12 and 0.2.4 dated 2015-01-24

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Package Rcpp updated to version 0.11.4 with previous version 0.11.3 dated 2014-09-29

Title: Seamless R and C++ Integration
Description: The Rcpp package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about Rcpp is provided by several vignettes included in this package, via the Rcpp Gallery site at http://gallery.rcpp.org, the paper by Eddelbuettel and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Douglas Bates, and John Chambers
Maintainer: Dirk Eddelbuettel

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 Rcpp-0.11.4/Rcpp/inst/unitTests/runit.misc.R                  |    7 
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 Rcpp-0.11.4/Rcpp/src/api.cpp                                  |   17 
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 72 files changed, 1036 insertions(+), 395 deletions(-)

More information about Rcpp at CRAN
Permanent link

Package dfcomb updated to version 2.0-2 with previous version 1.0-1 dated 2014-11-07

Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Description: Phase I/II adaptive dose-finding design for combination studies. Several methods are proposed depending on the type of combinations: (1) the combination of two cytotoxic agents, and (2) combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere

Diff between dfcomb versions 1.0-1 dated 2014-11-07 and 2.0-2 dated 2015-01-24

 dfcomb-1.0-1/dfcomb/man/logistic_next.Rd     |only
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 dfcomb-2.0-2/dfcomb/DESCRIPTION              |   11 
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 dfcomb-2.0-2/dfcomb/R/dfcomb.R               |  690 ++++++++++++++--
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 dfcomb-2.0-2/dfcomb/src/dfcomb.h             |   47 +
 dfcomb-2.0-2/dfcomb/src/logistic.cpp         | 1133 +++++++++++++--------------
 dfcomb-2.0-2/dfcomb/src/plateau.cpp          |only
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 24 files changed, 1293 insertions(+), 685 deletions(-)

More information about dfcomb at CRAN
Permanent link

Package RcppAnnoy updated to version 0.0.5 with previous version 0.0.4 dated 2014-12-08

Title: Rcpp Bindings for Annoy, a Library for Approximate Nearest Neighbors
Description: Annoy is a small C++ library for Approximate Nearest Neighbors written for efficient memory usage as well an ability to load from / save to disk. This package provides an R interface by relying on the Rcpp and BH packages, exposing the same interface as the original Python wrapper to Annoy. See https://github.com/spotify/annoy for more on Annoy. Annoy is released under Version 2.0 of the Apache License. Also included is a small Windows port of mmap which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between RcppAnnoy versions 0.0.4 dated 2014-12-08 and 0.0.5 dated 2015-01-24

 ChangeLog               |   21 ++++++++++++++++++++-
 DESCRIPTION             |   10 +++++-----
 MD5                     |    8 ++++----
 inst/include/annoylib.h |   33 ++++++++++++++++++++-------------
 src/Makevars            |    2 +-
 5 files changed, 50 insertions(+), 24 deletions(-)

More information about RcppAnnoy at CRAN
Permanent link

Package lgcp updated to version 1.3-7 with previous version 1.3-6 dated 2014-05-09

Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal, multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle. Additional code contributions from E. Pebesma.
Maintainer: Benjamin M. Taylor

Diff between lgcp versions 1.3-6 dated 2014-05-09 and 1.3-7 dated 2015-01-24

 DESCRIPTION                                              |   19 
 MD5                                                      |  794 +++++++--------
 NAMESPACE                                                |  136 ++
 R/arealMethods.R                                         |    4 
 R/getCounts.R                                            |    1 
 R/lgcp.R                                                 |   30 
 R/lgcpMethods.R                                          |    6 
 R/lgcpStructures.R                                       |    4 
 R/mstpppClassDef.R                                       |    2 
 R/parameterEstimation.R                                  |    1 
 R/selectObsWindow.R                                      |    1 
 R/spatialAtRiskClassDef.R                                |    4 
 R/stpppClassDef.R                                        |    2 
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 man/exponentialCovFct.Rd                                 |   13 
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 man/fftmultiply.Rd                                       |    9 
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 man/xvals.SpatialGridDataFrame.Rd                        |   16 
 man/xvals.default.Rd                                     |   16 
 man/xvals.fromXYZ.Rd                                     |   16 
 man/xvals.lgcpPredict.Rd                                 |    9 
 man/yvals.Rd                                             |   13 
 man/yvals.SpatialGridDataFrame.Rd                        |   16 
 man/yvals.default.Rd                                     |   16 
 man/yvals.fromXYZ.Rd                                     |   16 
 man/yvals.lgcpPredict.Rd                                 |    9 
 man/zvals.Rd                                             |   13 
 man/zvals.SpatialGridDataFrame.Rd                        |   16 
 man/zvals.default.Rd                                     |   16 
 man/zvals.fromXYZ.Rd                                     |   16 
 tests/fromSPDFTest.R                                     |    2 
 tests/lgcpMethodsTest.R                                  |    3 
 tests/mstpppClassTest.R                                  |    1 
 tests/stpppClassTest.R                                   |    1 
 398 files changed, 4464 insertions(+), 6115 deletions(-)

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Package simsalapar updated to version 1.0-5 with previous version 1.0-4 dated 2014-09-17

Title: Tools for Simulation Studies in Parallel with R
Description: Tools for setting up, conducting, and evaluating larger-scale simulation studies, including parallel computations.
Author: Marius Hofert and Martin Maechler
Maintainer: Marius Hofert

Diff between simsalapar versions 1.0-4 dated 2014-09-17 and 1.0-5 dated 2015-01-24

 DESCRIPTION                |   17 +++---
 MD5                        |   35 ++++++------
 NAMESPACE                  |   28 ++++++++--
 R/array-stuff.R            |   36 +++++--------
 R/doApply.R                |    4 -
 R/graphics.R               |   53 ++++++++++++-------
 R/grid-stuff.R             |   11 ++--
 R/subjob.R                 |   17 ++----
 demo/00Index               |    1 
 demo/VaRsuperadd.R         |   10 ++-
 demo/rSeed-ex.R            |only
 demo/robcovMCD.R           |  123 ++++++++++++++++++++++++++++++++++++---------
 inst/xtraR/Sweave-prelim.R |   32 +++++++++--
 man/array-stuff.Rd         |   50 ++++++++++++------
 man/doCallWE.Rd            |    2 
 man/mayplot.Rd             |    2 
 man/subjob.Rd              |   94 +++++++++++++++++++---------------
 man/varlist.Rd             |   23 +++++---
 tests/tstTGforecasts.R     |    5 +
 19 files changed, 354 insertions(+), 189 deletions(-)

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Package pscl updated to version 1.4.8 with previous version 1.4.6 dated 2014-08-27

Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman

Diff between pscl versions 1.4.6 dated 2014-08-27 and 1.4.8 dated 2015-01-24

 pscl-1.4.6/pscl/inst/extdata/id1.RData           |only
 pscl-1.4.6/pscl/inst/extdata/id2.RData           |only
 pscl-1.4.8/pscl/DESCRIPTION                      |   13 ++-
 pscl-1.4.8/pscl/MD5                              |   74 +++++++++++-----------
 pscl-1.4.8/pscl/NAMESPACE                        |    4 -
 pscl-1.4.8/pscl/NEWS                             |   15 +++-
 pscl-1.4.8/pscl/R/hurdle.R                       |    2 
 pscl-1.4.8/pscl/R/plot.ideal.r                   |    2 
 pscl-1.4.8/pscl/R/vuong.R                        |   76 +++++++++++++----------
 pscl-1.4.8/pscl/inst/CITATION                    |    2 
 pscl-1.4.8/pscl/inst/doc/countreg.pdf            |binary
 pscl-1.4.8/pscl/inst/extdata/id1.rda             |only
 pscl-1.4.8/pscl/inst/extdata/id2.rda             |only
 pscl-1.4.8/pscl/man/AustralianElectionPolling.Rd |    5 -
 pscl-1.4.8/pscl/man/admit.Rd                     |    2 
 pscl-1.4.8/pscl/man/bioChemists.Rd               |    2 
 pscl-1.4.8/pscl/man/ca2006.Rd                    |    4 -
 pscl-1.4.8/pscl/man/constrain.items.Rd           |    2 
 pscl-1.4.8/pscl/man/extractRollCallObject.Rd     |    2 
 pscl-1.4.8/pscl/man/hitmiss.Rd                   |    2 
 pscl-1.4.8/pscl/man/ideal.Rd                     |   69 ++++++++++----------
 pscl-1.4.8/pscl/man/idealToMCMC.Rd               |    2 
 pscl-1.4.8/pscl/man/odTest.Rd                    |    2 
 pscl-1.4.8/pscl/man/pR2.Rd                       |    2 
 pscl-1.4.8/pscl/man/partycodes.Rd                |    2 
 pscl-1.4.8/pscl/man/plot.ideal.Rd                |    3 
 pscl-1.4.8/pscl/man/plot.predict.ideal.Rd        |    2 
 pscl-1.4.8/pscl/man/politicalInformation.Rd      |    2 
 pscl-1.4.8/pscl/man/postProcess.Rd               |    4 -
 pscl-1.4.8/pscl/man/predict.ideal.Rd             |   16 ----
 pscl-1.4.8/pscl/man/predprob.ideal.Rd            |   10 ---
 pscl-1.4.8/pscl/man/presidentialElections.Rd     |    2 
 pscl-1.4.8/pscl/man/readKH.Rd                    |    5 -
 pscl-1.4.8/pscl/man/s109.Rd                      |    3 
 pscl-1.4.8/pscl/man/tracex.Rd                    |   19 +----
 pscl-1.4.8/pscl/man/vuong.Rd                     |    8 ++
 pscl-1.4.8/pscl/src/IDEAL.c                      |   50 +++++++++++++--
 pscl-1.4.8/pscl/src/crossprod.c                  |    2 
 pscl-1.4.8/pscl/src/dtnorm.c                     |   10 +--
 pscl-1.4.8/pscl/src/util.c                       |   45 ++++++-------
 40 files changed, 250 insertions(+), 215 deletions(-)

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Package NAM updated to version 1.0.2.1 with previous version 1.0.2 dated 2015-01-15

Title: Nested Association Mapping analysis
Description: The NAM package was designed for association studies in nested association mapping (NAM) panels, but it also can handle biparental and random populations. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier

Diff between NAM versions 1.0.2 dated 2015-01-15 and 1.0.2.1 dated 2015-01-24

 DESCRIPTION        |   14 ++++++-------
 MD5                |   11 +++++-----
 R/MCreml.R         |only
 R/reference.R      |   57 ++++++++++++++++++++++++-----------------------------
 R/reml.R           |    4 +--
 man/NAM-package.Rd |   13 ++----------
 man/reml.Rd        |    7 +++---
 7 files changed, 48 insertions(+), 58 deletions(-)

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New package knncat with initial version 1.2.1
Package: knncat
Version: 1.2.1
Date: 2015-01-22
Title: Nearest-neighbor Classification with Categorical Variables
Author: Sam Buttrey
Maintainer: Sam Buttrey
Description: Scale categorical variables in such a way as to make NN classification as accurate as possible. The code also handles continuous variables and prior probabilities, and does intelligent variable selection and estimation of both error rates and the right number of NN's.
License: GPL-2
Packaged: 2015-01-23 20:17:52 UTC; sebuttre
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-24 06:41:56

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