Title: Fits Normal and Student-t Censored Regression Model
Diff between CensRegMod versions 0.0 dated 2012-07-12 and 1.0 dated 2015-01-24
Description: Fits univariate censored linear regression model under Normal or Student-t distribution
Author: Monique Bettio Massuia
Maintainer: Monique Bettio Massuia
CensRegMod-0.0/CensRegMod/data/motorettes.txt.gz |only
CensRegMod-0.0/CensRegMod/man/motorettes.Rd |only
CensRegMod-1.0/CensRegMod/DESCRIPTION | 22 -
CensRegMod-1.0/CensRegMod/MD5 | 12
CensRegMod-1.0/CensRegMod/R/Utillitarios.R | 331 +++++++++++----------
CensRegMod-1.0/CensRegMod/R/em.cens.R | 349 +++++++++++++----------
CensRegMod-1.0/CensRegMod/data/wage.rates.txt.gz |only
CensRegMod-1.0/CensRegMod/man/em.cens.Rd | 35 +-
CensRegMod-1.0/CensRegMod/man/wage.rates.Rd |only
9 files changed, 421 insertions(+), 328 deletions(-)
Title: Utility Functions for Web Applications
Diff between webutils versions 0.2 dated 2014-10-30 and 0.3 dated 2015-01-24
Description: Utility functions for developing web applications. Includes parsers
for application/x-www-form-urlencoded as well as multipart/form-data
and examples of using the parser with either httpuv or rhttpd.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 8 ++++----
LICENSE | 2 +-
MD5 | 6 +++---
R/demo_rhttpd.R | 11 ++++++++---
4 files changed, 16 insertions(+), 11 deletions(-)
Title: Natural Language Processing Infrastructure
Diff between NLP versions 0.1-5 dated 2014-08-23 and 0.1-6 dated 2015-01-24
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik
DESCRIPTION | 6 ++---
MD5 | 32 ++++++++++++++---------------
R/sysdata.rda |binary
man/AnnotatedPlainTextDocument.Rd | 41 +++++++++++++++++++++-----------------
man/Annotation.Rd | 23 +++++++++++----------
man/Annotator.Rd | 10 ++++-----
man/CoNLLTextDocument.Rd | 16 +++++++++-----
man/Span.Rd | 11 +++++-----
man/String.Rd | 8 +++----
man/TaggedTextDocument.Rd | 17 ++++++++++-----
man/TextDocument.Rd | 6 ++---
man/Tree.Rd | 6 ++---
man/WordListDocument.Rd | 9 ++++----
man/annotators.Rd | 4 +--
man/datetime.Rd | 8 +++----
man/tokenizers.Rd | 6 ++---
man/viewers.Rd | 2 -
17 files changed, 111 insertions(+), 94 deletions(-)
Title: Selected ISO codes
Diff between ISOcodes versions 2014.03.24 dated 2014-03-24 and 2015.01.24 dated 2015-01-24
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik
DESCRIPTION | 6 +++---
MD5 | 30 +++++++++++++++---------------
data/ISO_15924.rda |binary
data/ISO_3166_1.rda |binary
data/ISO_3166_2.rda |binary
data/ISO_3166_3.rda |binary
data/ISO_4217.rda |binary
data/ISO_4217_Historic.rda |binary
data/ISO_639_2.rda |binary
data/ISO_639_3.rda |binary
data/ISO_639_3_Retirements.rda |binary
data/ISO_639_5.rda |binary
data/ISO_8859.rda |binary
data/UN_M.49_Countries.rda |binary
data/UN_M.49_Regions.rda |binary
man/ISO_639.Rd | 2 +-
16 files changed, 19 insertions(+), 19 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design For MTA
Diff between dfmta versions 1.1-0 dated 2015-01-12 and 1.1-2 dated 2015-01-24
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization".
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
DESCRIPTION | 8
MD5 | 27 -
NAMESPACE | 6
configure | 148 +++++++++-
configure.ac | 11
configure.win |only
src/CppBugs/cppbugs/cppbugs.hpp | 1
src/CppBugs/cppbugs/distributions/mcmc.discrete.hpp | 2
src/CppBugs/cppbugs/distributions/mcmc.exponential.censored.hpp | 10
src/CppBugs/cppbugs/distributions/mcmc.multivariate.normal.hpp | 4
src/CppBugs/cppbugs/mcmc.math.hpp | 4
src/CppBugs/cppbugs/mcmc.model.hpp | 8
src/CppBugs/cppbugs/mcmc.rng.hpp | 24 -
src/Makevars.in | 4
src/dfmta.cpp | 4
15 files changed, 203 insertions(+), 58 deletions(-)
Title: A Toolbox for Non-tabular Data Manipulation
Diff between rlist versions 0.3-2 dated 2014-08-22 and 0.4 dated 2015-01-24
Description: Provides a set of functions for data manipulation with
list objects, including mapping, filtering, grouping, sorting,
updating, searching, and other useful functions. Most functions
are designed to be pipeline friendly so that data processing with
lists can be chained.
Author: Kun Ren
Maintainer: Kun Ren
rlist-0.3-2/rlist/R/equal.R |only
rlist-0.3-2/rlist/R/summary.list.R |only
rlist-0.3-2/rlist/build |only
rlist-0.3-2/rlist/inst |only
rlist-0.3-2/rlist/man/equal.Rd |only
rlist-0.3-2/rlist/man/rlist.Rd |only
rlist-0.3-2/rlist/man/summary.list.Rd |only
rlist-0.3-2/rlist/tests/testthat/test-summary.list.R |only
rlist-0.4/rlist/DESCRIPTION | 28 -
rlist-0.4/rlist/MD5 | 289 ++++++++-----------
rlist-0.4/rlist/NAMESPACE | 9
rlist-0.4/rlist/NEWS | 66 +++-
rlist-0.4/rlist/R/List.R | 97 ++----
rlist-0.4/rlist/R/data.R |only
rlist-0.4/rlist/R/functions.R | 109 ++++++-
rlist-0.4/rlist/R/internal.R | 176 +++++++----
rlist-0.4/rlist/R/lambda.R | 32 --
rlist-0.4/rlist/R/list.all.R | 27 +
rlist-0.4/rlist/R/list.any.R | 23 -
rlist-0.4/rlist/R/list.append.R | 2
rlist-0.4/rlist/R/list.apply.R | 4
rlist-0.4/rlist/R/list.cases.R | 25 -
rlist-0.4/rlist/R/list.cbind.R | 8
rlist-0.4/rlist/R/list.class.R | 24 -
rlist-0.4/rlist/R/list.clean.R | 5
rlist-0.4/rlist/R/list.common.R | 7
rlist-0.4/rlist/R/list.count.R | 12
rlist-0.4/rlist/R/list.do.R | 16 -
rlist-0.4/rlist/R/list.exclude.R | 11
rlist-0.4/rlist/R/list.extract.R | 9
rlist-0.4/rlist/R/list.filter.R | 20 -
rlist-0.4/rlist/R/list.find.R | 13
rlist-0.4/rlist/R/list.findi.R | 15
rlist-0.4/rlist/R/list.first.R |only
rlist-0.4/rlist/R/list.flatten.R | 11
rlist-0.4/rlist/R/list.group.R | 26 -
rlist-0.4/rlist/R/list.insert.R | 11
rlist-0.4/rlist/R/list.is.R | 9
rlist-0.4/rlist/R/list.iter.R | 8
rlist-0.4/rlist/R/list.join.R | 25 -
rlist-0.4/rlist/R/list.load.R | 98 ++++--
rlist-0.4/rlist/R/list.map.R | 43 +-
rlist-0.4/rlist/R/list.maps.R | 16 -
rlist-0.4/rlist/R/list.match.R | 9
rlist-0.4/rlist/R/list.merge.R | 16 -
rlist-0.4/rlist/R/list.names.R |only
rlist-0.4/rlist/R/list.order.R | 21 -
rlist-0.4/rlist/R/list.parse.R | 45 +-
rlist-0.4/rlist/R/list.prepend.R | 9
rlist-0.4/rlist/R/list.rbind.R | 8
rlist-0.4/rlist/R/list.remove.R | 15
rlist-0.4/rlist/R/list.reverse.R | 7
rlist-0.4/rlist/R/list.sample.R | 19 -
rlist-0.4/rlist/R/list.save.R | 41 +-
rlist-0.4/rlist/R/list.search.R | 76 ++--
rlist-0.4/rlist/R/list.select.R | 19 -
rlist-0.4/rlist/R/list.serialize.R | 14
rlist-0.4/rlist/R/list.skip.R | 13
rlist-0.4/rlist/R/list.skipWhile.R | 19 -
rlist-0.4/rlist/R/list.sort.R | 17 -
rlist-0.4/rlist/R/list.stack.R | 20 -
rlist-0.4/rlist/R/list.subset.R | 23 -
rlist-0.4/rlist/R/list.table.R | 22 -
rlist-0.4/rlist/R/list.take.R | 7
rlist-0.4/rlist/R/list.takeWhile.R | 17 -
rlist-0.4/rlist/R/list.ungroup.R | 8
rlist-0.4/rlist/R/list.unserialize.R | 14
rlist-0.4/rlist/R/list.update.R | 23 -
rlist-0.4/rlist/R/list.which.R | 9
rlist-0.4/rlist/R/list.zip.R | 75 ++++
rlist-0.4/rlist/R/rlist.R | 15
rlist-0.4/rlist/R/subset.list.R | 19 -
rlist-0.4/rlist/R/utils.R | 4
rlist-0.4/rlist/README.md | 102 ++----
rlist-0.4/rlist/data |only
rlist-0.4/rlist/man/List.Rd | 9
rlist-0.4/rlist/man/list.all.Rd | 25 +
rlist-0.4/rlist/man/list.any.Rd | 21 -
rlist-0.4/rlist/man/list.append.Rd | 5
rlist-0.4/rlist/man/list.apply.Rd | 9
rlist-0.4/rlist/man/list.cases.Rd | 15
rlist-0.4/rlist/man/list.cbind.Rd | 10
rlist-0.4/rlist/man/list.class.Rd | 20 -
rlist-0.4/rlist/man/list.clean.Rd | 7
rlist-0.4/rlist/man/list.common.Rd | 5
rlist-0.4/rlist/man/list.count.Rd | 9
rlist-0.4/rlist/man/list.do.Rd | 13
rlist-0.4/rlist/man/list.exclude.Rd | 11
rlist-0.4/rlist/man/list.extract.Rd | 11
rlist-0.4/rlist/man/list.filter.Rd | 16 -
rlist-0.4/rlist/man/list.find.Rd | 11
rlist-0.4/rlist/man/list.findi.Rd | 13
rlist-0.4/rlist/man/list.first.Rd |only
rlist-0.4/rlist/man/list.flatten.Rd | 5
rlist-0.4/rlist/man/list.group.Rd | 19 -
rlist-0.4/rlist/man/list.insert.Rd | 7
rlist-0.4/rlist/man/list.is.Rd | 5
rlist-0.4/rlist/man/list.iter.Rd | 9
rlist-0.4/rlist/man/list.join.Rd | 13
rlist-0.4/rlist/man/list.last.Rd |only
rlist-0.4/rlist/man/list.load.Rd | 38 ++
rlist-0.4/rlist/man/list.map.Rd | 19 -
rlist-0.4/rlist/man/list.maps.Rd | 8
rlist-0.4/rlist/man/list.mapv.Rd | 22 -
rlist-0.4/rlist/man/list.match.Rd | 7
rlist-0.4/rlist/man/list.merge.Rd | 9
rlist-0.4/rlist/man/list.names.Rd |only
rlist-0.4/rlist/man/list.order.Rd | 21 -
rlist-0.4/rlist/man/list.parse.Rd | 13
rlist-0.4/rlist/man/list.prepend.Rd | 11
rlist-0.4/rlist/man/list.rbind.Rd | 10
rlist-0.4/rlist/man/list.remove.Rd | 11
rlist-0.4/rlist/man/list.reverse.Rd | 7
rlist-0.4/rlist/man/list.sample.Rd | 13
rlist-0.4/rlist/man/list.save.Rd | 16 -
rlist-0.4/rlist/man/list.search.Rd | 57 +--
rlist-0.4/rlist/man/list.select.Rd | 15
rlist-0.4/rlist/man/list.serialize.Rd | 8
rlist-0.4/rlist/man/list.skip.Rd | 13
rlist-0.4/rlist/man/list.skipWhile.Rd | 11
rlist-0.4/rlist/man/list.sort.Rd | 17 -
rlist-0.4/rlist/man/list.stack.Rd | 19 -
rlist-0.4/rlist/man/list.subset.Rd | 24 -
rlist-0.4/rlist/man/list.table.Rd | 15
rlist-0.4/rlist/man/list.take.Rd | 5
rlist-0.4/rlist/man/list.takeWhile.Rd | 9
rlist-0.4/rlist/man/list.ungroup.Rd | 8
rlist-0.4/rlist/man/list.unserialize.Rd | 6
rlist-0.4/rlist/man/list.unzip.Rd |only
rlist-0.4/rlist/man/list.update.Rd | 17 -
rlist-0.4/rlist/man/list.which.Rd | 7
rlist-0.4/rlist/man/list.zip.Rd | 6
rlist-0.4/rlist/man/nyweather.Rd |only
rlist-0.4/rlist/man/rlist-package.Rd |only
rlist-0.4/rlist/man/subset.list.Rd | 16 -
rlist-0.4/rlist/man/tryEval.Rd | 5
rlist-0.4/rlist/man/tryGet.Rd | 5
rlist-0.4/rlist/tests/testthat/test-basic.R | 59 +++
rlist-0.4/rlist/tests/testthat/test-list.find.R | 8
rlist-0.4/rlist/tests/testthat/test-list.group.R | 8
rlist-0.4/rlist/tests/testthat/test-list.map.R | 3
rlist-0.4/rlist/tests/testthat/test-list.search.R | 82 ++---
rlist-0.4/rlist/tests/testthat/test-list.sort.R | 18 +
143 files changed, 1575 insertions(+), 1319 deletions(-)
Title: Rcpp Integration for GNU GSL Vectors and Matrices
Diff between RcppGSL versions 0.2.3 dated 2015-01-12 and 0.2.4 dated 2015-01-24
Description: Rcpp integration for GNU GSL vectors and matrices
The GNU Scientific Library (GSL) is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines
such as special functions, permutations, combinations, fast fourier
transforms, eigensystems, random numbers, quadrature, random distributions,
quasi-random sequences, Monte Carlo integration, N-tuples, differential
equations, simulated annealing, numerical differentiation, interpolation,
series acceleration, Chebyshev approximations, root-finding, discrete
Hankel transforms physical constants, basis splines and wavelets. There
are over 1000 functions in total with an extensive test suite.
The RcppGSL package provides an easy-to-use interface between GSL data
structures and R using concepts from Rcpp which is itself a package that
eases the interfaces between R and C++.
This package also serves as a prime example of how to build a package
that uses Rcpp to connect to another third-party library. The autoconf
script, inline plugin and example package can all be used as a stanza to
write a similar package against another library.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 23 +++++++++++++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++++---------
R/RcppExports.R |only
R/init.R |only
README.md | 2 +-
inst/NEWS.Rd | 11 +++++++++++
inst/doc/RcppGSL-intro.R | 8 ++++----
inst/doc/RcppGSL-intro.Rnw | 32 ++++++++++++++++++++++++++++++++
inst/doc/RcppGSL-intro.pdf |binary
inst/doc/RcppGSL-unitTests.pdf |binary
src/RcppExports.cpp |only
src/setErrorHandler.cpp |only
vignettes/RcppGSL-intro.Rnw | 32 ++++++++++++++++++++++++++++++++
14 files changed, 120 insertions(+), 18 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.11.3 dated 2014-09-29 and 0.11.4 dated 2015-01-24
Description: The Rcpp package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about Rcpp is provided by several vignettes included in this package, via the
Rcpp Gallery site at http://gallery.rcpp.org, the paper by Eddelbuettel and
Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey,
Douglas Bates, and John Chambers
Maintainer: Dirk Eddelbuettel
Rcpp-0.11.3/Rcpp/inst/examples/ConvolveBenchmarks/Makefile |only
Rcpp-0.11.3/Rcpp/inst/examples/OpenMP/Makefile |only
Rcpp-0.11.3/Rcpp/inst/unitTests/RcppTestA |only
Rcpp-0.11.4/Rcpp/.Rinstignore | 1
Rcpp-0.11.4/Rcpp/ChangeLog | 178 +++++
Rcpp-0.11.4/Rcpp/DESCRIPTION | 8
Rcpp-0.11.4/Rcpp/MD5 | 143 ++--
Rcpp-0.11.4/Rcpp/R/Attributes.R | 4
Rcpp-0.11.4/Rcpp/R/Rcpp.package.skeleton.R | 4
Rcpp-0.11.4/Rcpp/R/unit.tests.R | 4
Rcpp-0.11.4/Rcpp/README.md | 24
Rcpp-0.11.4/Rcpp/build/Rcpp.pdf |binary
Rcpp-0.11.4/Rcpp/build/vignette.rds |binary
Rcpp-0.11.4/Rcpp/inst/NEWS.Rd | 57 +
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-attributes.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-modules.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.11.4/Rcpp/inst/doc/Rcpp.bib | 32 -
Rcpp-0.11.4/Rcpp/inst/examples/ConvolveBenchmarks/GNUmakefile |only
Rcpp-0.11.4/Rcpp/inst/examples/OpenMP/GNUmakefile |only
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/Rmath.h | 10
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/String.h | 2
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/config.h | 8
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/exceptions.h | 50 +
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/grow.h | 6
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/internal/NAComparator.h | 25
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/internal/r_vector.h | 55 +
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/macros/macros.h | 33 -
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/r |only
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/sugar/functions/mean.h | 133 +++-
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/sugar/functions/setdiff.h | 10
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/sugar/functions/var.h | 59 +
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/sugar/matrix/as_vector.h | 4
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/sugar/nona/nona.h | 2
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/traits/enable_if.h |only
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/traits/is_bool.h |only
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/traits/traits.h | 2
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/utils |only
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/vector/ListOf.h | 6
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/vector/MatrixColumn.h | 2
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/vector/Vector.h | 21
Rcpp-0.11.4/Rcpp/inst/include/Rcpp/vector/proxy.h | 2
Rcpp-0.11.4/Rcpp/inst/include/RcppCommon.h | 12
Rcpp-0.11.4/Rcpp/inst/unitTests/bin |only
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/ListOf.cpp | 10
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/Matrix.cpp | 13
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/String.cpp | 5
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/Vector.cpp | 16
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/attributes.cpp | 7
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/misc.cpp | 5
Rcpp-0.11.4/Rcpp/inst/unitTests/cpp/sugar.cpp | 29
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.ListOf.R | 11
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.Matrix.R | 5
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.String.R | 6
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.Vector.R | 8
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.attributes.R | 4
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.binary.package.R |only
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.client.package.R | 38 -
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.misc.R | 7
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.sugar.R | 315 ++++------
Rcpp-0.11.4/Rcpp/inst/unitTests/runit.sugar.var.R |only
Rcpp-0.11.4/Rcpp/inst/unitTests/src |only
Rcpp-0.11.4/Rcpp/inst/unitTests/testRcppPackage |only
Rcpp-0.11.4/Rcpp/src/api.cpp | 17
Rcpp-0.11.4/Rcpp/src/attributes.cpp | 6
Rcpp-0.11.4/Rcpp/vignettes/Rcpp.bib | 32 -
72 files changed, 1036 insertions(+), 395 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Diff between dfcomb versions 1.0-1 dated 2014-11-07 and 2.0-2 dated 2015-01-24
Description: Phase I/II adaptive dose-finding design for combination
studies. Several methods are proposed depending on the type of
combinations: (1) the combination of two cytotoxic agents, and (2)
combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
dfcomb-1.0-1/dfcomb/man/logistic_next.Rd |only
dfcomb-1.0-1/dfcomb/man/logistic_sim.Rd |only
dfcomb-1.0-1/dfcomb/src/Makevars |only
dfcomb-2.0-2/dfcomb/DESCRIPTION | 11
dfcomb-2.0-2/dfcomb/MD5 | 53 +
dfcomb-2.0-2/dfcomb/NAMESPACE | 10
dfcomb-2.0-2/dfcomb/R/dfcomb.R | 690 ++++++++++++++--
dfcomb-2.0-2/dfcomb/cleanup |only
dfcomb-2.0-2/dfcomb/configure |only
dfcomb-2.0-2/dfcomb/configure.ac |only
dfcomb-2.0-2/dfcomb/configure.win |only
dfcomb-2.0-2/dfcomb/man/CombIncrease_next.Rd |only
dfcomb-2.0-2/dfcomb/man/CombIncrease_sim.Rd |only
dfcomb-2.0-2/dfcomb/man/CombPlateau_next.Rd |only
dfcomb-2.0-2/dfcomb/man/CombPlateau_sim.Rd |only
dfcomb-2.0-2/dfcomb/man/dfcomb-package.Rd | 25
dfcomb-2.0-2/dfcomb/src/CppBugs |only
dfcomb-2.0-2/dfcomb/src/Makevars.in |only
dfcomb-2.0-2/dfcomb/src/Makevars.win | 3
dfcomb-2.0-2/dfcomb/src/dfcomb.c | 6
dfcomb-2.0-2/dfcomb/src/dfcomb.h | 47 +
dfcomb-2.0-2/dfcomb/src/logistic.cpp | 1133 +++++++++++++--------------
dfcomb-2.0-2/dfcomb/src/plateau.cpp |only
dfcomb-2.0-2/dfcomb/tools |only
24 files changed, 1293 insertions(+), 685 deletions(-)
Title: Rcpp Bindings for Annoy, a Library for Approximate Nearest
Neighbors
Diff between RcppAnnoy versions 0.0.4 dated 2014-12-08 and 0.0.5 dated 2015-01-24
Description: Annoy is a small C++ library for Approximate Nearest Neighbors
written for efficient memory usage as well an ability to load from / save to
disk. This package provides an R interface by relying on the Rcpp and BH
packages, exposing the same interface as the original Python wrapper to
Annoy. See https://github.com/spotify/annoy for more on Annoy. Annoy is
released under Version 2.0 of the Apache License. Also included is a small
Windows port of mmap which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 21 ++++++++++++++++++++-
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
inst/include/annoylib.h | 33 ++++++++++++++++++++-------------
src/Makevars | 2 +-
5 files changed, 50 insertions(+), 24 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 1.3-6 dated 2014-05-09 and 1.3-7 dated 2015-01-24
Description: Spatial and spatio-temporal modelling of point patterns using the
log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal,
multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle. Additional
code contributions from E. Pebesma.
Maintainer: Benjamin M. Taylor
DESCRIPTION | 19
MD5 | 794 +++++++--------
NAMESPACE | 136 ++
R/arealMethods.R | 4
R/getCounts.R | 1
R/lgcp.R | 30
R/lgcpMethods.R | 6
R/lgcpStructures.R | 4
R/mstpppClassDef.R | 2
R/parameterEstimation.R | 1
R/selectObsWindow.R | 1
R/spatialAtRiskClassDef.R | 4
R/stpppClassDef.R | 2
build/vignette.rds |binary
inst/CITATION | 83 -
inst/doc/lgcp.pdf |binary
man/BetaParameters.Rd | 7
man/C.diff.single.im.Rd | 56 -
man/CovFunction.Rd | 14
man/CovFunction.function.Rd | 12
man/CovParameters.Rd | 7
man/Cvb.Rd | 34
man/EvaluatePrior.Rd | 11
man/Extract.mstppp.Rd | 7
man/Extract.stppp.Rd | 7
man/GAfinalise.MonteCarloAverage.Rd | 13
man/GAfinalise.Rd | 16
man/GAfinalise.nullAverage.Rd | 9
man/GAinitialise.MonteCarloAverage.Rd | 10
man/GAinitialise.Rd | 16
man/GAinitialise.nullAverage.Rd | 9
man/GAreturnvalue.MonteCarloAverage.Rd | 10
man/GAreturnvalue.Rd | 16
man/GAreturnvalue.nullAverage.Rd | 9
man/GAupdate.MonteCarloAverage.Rd | 13
man/GAupdate.Rd | 16
man/GAupdate.nullAverage.Rd | 9
man/GFfinalise.Rd | 15
man/GFfinalise.dump2dir.Rd | 12
man/GFfinalise.nullFunction.Rd | 9
man/GFinitialise.Rd | 15
man/GFinitialise.dump2dir.Rd | 12
man/GFinitialise.nullFunction.Rd | 9
man/GFreturnvalue.Rd | 15
man/GFreturnvalue.dump2dir.Rd | 12
man/GFreturnvalue.nullFunction.Rd | 9
man/GFupdate.Rd | 15
man/GFupdate.dump2dir.Rd | 12
man/GFupdate.nullFunction.Rd | 9
man/GPdrv.Rd | 38
man/GPdrv2.Rd | 38
man/GPdrv2_Multitype.Rd | 44
man/GPlist2array.Rd | 11
man/GPrealisation.Rd | 25
man/GammafromY.Rd | 12
man/GaussianPrior.Rd | 9
man/K.diff.single.Rd | 51
man/K.u.Rd | 24
man/K.val.Rd | 24
man/KinhomAverage.Rd | 50
man/LogGaussianPrior.Rd | 11
man/MALAlgcp.Rd | 68 -
man/MALAlgcpAggregateSpatial.PlusPars.Rd | 68 -
man/MALAlgcpMultitypeSpatial.PlusPars.Rd | 68 -
man/MALAlgcpSpatial.PlusPars.Rd | 61 -
man/MALAlgcpSpatial.Rd | 57 -
man/MALAlgcpSpatioTemporal.PlusPars.Rd | 69 -
man/MonteCarloAverage.Rd | 49
man/PriorSpec.Rd | 10
man/PriorSpec.list.Rd | 11
man/RandomFieldsCovFct.Rd | 17
man/SpatialPolygonsDataFrame.stapp.Rd | 7
man/SpikedExponentialCovFct.Rd | 22
man/YfromGamma.Rd | 12
man/add.list.Rd | 11
man/addTemporalCovariates.Rd | 62 -
man/affine.SpatialPolygonsDataFrame.Rd | 11
man/affine.fromFunction.Rd | 11
man/affine.fromSPDF.Rd | 11
man/affine.fromXYZ.Rd | 11
man/affine.stppp.Rd | 8
man/aggCovInfo.ArealWeightedMean.Rd | 8
man/aggCovInfo.ArealWeightedSum.Rd | 11
man/aggCovInfo.Majority.Rd | 8
man/aggCovInfo.Rd | 6
man/aggregateCovariateInfo.Rd | 25
man/aggregateformulaList.Rd | 9
man/andrieuthomsh.Rd | 60 -
man/as.SpatialGridDataFrame.Rd | 9
man/as.SpatialGridDataFrame.fromXYZ.Rd | 9
man/as.SpatialPixelsDataFrame.Rd | 6
man/as.SpatialPixelsDataFrame.lgcpgrid.Rd | 13
man/as.array.lgcpgrid.Rd | 6
man/as.fromXYZ.Rd | 12
man/as.fromXYZ.fromFunction.Rd | 21
man/as.im.fromFunction.Rd | 18
man/as.im.fromSPDF.Rd | 15
man/as.im.fromXYZ.Rd | 12
man/as.list.lgcpgrid.Rd | 15
man/as.owin.stapp.Rd | 11
man/as.owinlist.Rd | 6
man/as.owinlist.SpatialPolygonsDataFrame.Rd | 23
man/as.owinlist.stapp.Rd | 16
man/as.ppp.mstppp.Rd | 12
man/as.ppp.stppp.Rd | 9
man/as.stppp.Rd | 6
man/as.stppp.stapp.Rd | 38
man/assigninterp.Rd | 52
man/at.Rd | 9
man/autocorr.Rd | 41
man/autocorrMultitype.Rd | 30
man/betavals.Rd | 20
man/blockcircbase.Rd | 27
man/blockcircbaseFunction.Rd | 39
man/bt.scalar.Rd | 6
man/checkObsWin.Rd | 11
man/chooseCellwidth.Rd | 33
man/circulant.Rd | 6
man/circulant.matrix.Rd | 15
man/circulant.numeric.Rd | 6
man/clearinterp.Rd | 7
man/computeGradtruncSpatial.Rd | 33
man/computeGradtruncSpatioTemporal.Rd | 35
man/condProbs.Rd | 55 -
man/constantInTime.Rd | 22
man/constantInTime.numeric.Rd | 30
man/constantInTime.stppp.Rd | 25
man/constanth.Rd | 11
man/cov.interp.fft.Rd | 30
man/covEffects.Rd | 26
man/d.func.Rd | 14
man/density.stppp.Rd | 14
man/discreteWindow.Rd | 6
man/discreteWindow.lgcpPredict.Rd | 15
man/dump2dir.Rd | 36
man/eigenfrombase.Rd | 7
man/etavals.Rd | 20
man/exceedProbs.Rd | 28
man/exceedProbsAggregated.Rd | 30
man/expectation.Rd | 9
man/expectation.lgcpPredict.Rd | 46
man/expectation.lgcpPredictSpatialOnlyPlusParameters.Rd | 24
man/exponentialCovFct.Rd | 13
man/extendspatialAtRisk.Rd | 14
man/extract.Rd | 9
man/extract.lgcpPredict.Rd | 34
man/fftgrid.Rd | 35
man/fftinterpolate.Rd | 9
man/fftinterpolate.fromFunction.Rd | 20
man/fftinterpolate.fromSPDF.Rd | 23
man/fftinterpolate.fromXYZ.Rd | 20
man/fftmultiply.Rd | 9
man/formulaList.Rd | 11
man/g.diff.single.Rd | 50
man/gOverlay.Rd | 13
man/genFFTgrid.Rd | 24
man/getCellCounts.Rd | 13
man/getCounts.Rd | 23
man/getCovParameters.GPrealisation.Rd | 9
man/getCovParameters.Rd | 9
man/getCovParameters.list.Rd | 9
man/getLHSformulaList.Rd | 7
man/getRotation.Rd | 6
man/getRotation.default.Rd | 9
man/getRotation.stppp.Rd | 14
man/getZmat.Rd | 93 -
man/getZmats.Rd | 10
man/getinterp.Rd | 35
man/getlgcpPredictSpatialINLA.Rd | 5
man/getpolyol.Rd | 48
man/getup.Rd | 8
man/ginhomAverage.Rd | 54 -
man/grid2spdf.Rd | 12
man/grid2spix.Rd | 12
man/grid2spoly.Rd | 12
man/grid2spts.Rd | 12
man/gridInWindow.Rd | 24
man/gridav.Rd | 6
man/gridav.lgcpPredict.Rd | 19
man/gridfun.Rd | 9
man/gridfun.lgcpPredict.Rd | 15
man/gu.Rd | 16
man/guessinterp.Rd | 56 -
man/hasNext.Rd | 4
man/hasNext.iter.Rd | 8
man/hvals.Rd | 9
man/hvals.lgcpPredict.Rd | 14
man/identify.lgcpPredict.Rd | 23
man/identifygrid.Rd | 13
man/image.lgcpgrid.Rd | 19
man/initialiseAMCMC.Rd | 17
man/initialiseAMCMC.andrieuthomsh.Rd | 18
man/initialiseAMCMC.constanth.Rd | 6
man/integerise.Rd | 9
man/integerise.mstppp.Rd | 9
man/integerise.stppp.Rd | 13
man/intens.Rd | 6
man/intens.lgcpPredict.Rd | 9
man/intens.lgcpSimMultitypeSpatialPlusParameters.Rd | 10
man/intens.lgcpSimSpatialPlusParameters.Rd | 10
man/interptypes.Rd | 33
man/inversebase.Rd | 7
man/is.SPD.Rd | 10
man/is.burnin.Rd | 7
man/is.pow2.Rd | 4
man/is.retain.Rd | 4
man/iteration.Rd | 7
man/lambdaEst.Rd | 9
man/lambdaEst.ppp.Rd | 79 -
man/lambdaEst.stppp.Rd | 79 -
man/lgcp-package.Rd | 77 -
man/lgcpForecast.Rd | 34
man/lgcpInits.Rd | 47
man/lgcpPredict.Rd | 255 +---
man/lgcpPredictAggregateSpatialPlusPars.Rd | 207 +--
man/lgcpPredictAggregated.Rd | 270 +----
man/lgcpPredictMultitypeSpatialPlusPars.Rd | 236 +---
man/lgcpPredictSpatial.Rd | 174 +--
man/lgcpPredictSpatialINLA.Rd | 164 +--
man/lgcpPredictSpatialPlusPars.Rd | 193 +--
man/lgcpPredictSpatioTemporalPlusPars.Rd | 239 +---
man/lgcpPrior.Rd | 29
man/lgcpSim.Rd | 133 --
man/lgcpSimMultitypeSpatialCovariates.Rd | 39
man/lgcpSimSpatial.Rd | 33
man/lgcpSimSpatialCovariates.Rd | 48
man/lgcpbayes.Rd | 2
man/lgcpgrid.Rd | 37
man/lgcpgrid.array.Rd | 24
man/lgcpgrid.list.Rd | 32
man/lgcpgrid.matrix.Rd | 20
man/lgcppars.Rd | 21
man/lgcpvignette.Rd | 2
man/loc2poly.Rd | 21
man/loop.mcmc.Rd | 6
man/ltar.Rd | 22
man/matchcovariance.Rd | 29
man/mcmcLoop.Rd | 14
man/mcmcProgressNone.Rd | 4
man/mcmcProgressPrint.Rd | 4
man/mcmcProgressTextBar.Rd | 4
man/mcmcProgressTk.Rd | 4
man/mcmcpars.Rd | 19
man/mcmctrace.Rd | 9
man/mcmctrace.lgcpPredict.Rd | 13
man/meanfield.Rd | 6
man/meanfield.lgcpPredict.Rd | 11
man/meanfield.lgcpPredictINLA.Rd | 9
man/minimum.contrast.Rd | 78 -
man/minimum.contrast.spatiotemporal.Rd | 95 -
man/mstppp.Rd | 15
man/mstppp.list.Rd | 15
man/mstppp.ppp.Rd | 17
man/mstppp.stppp.Rd | 12
man/muEst.Rd | 34
man/multiply.list.Rd | 11
man/my.KinhomAverage.Rd | 41
man/my.ginhomAverage.Rd | 44
man/neattable.Rd | 6
man/neigh2D.Rd | 15
man/nextStep.Rd | 4
man/nullAverage.Rd | 10
man/nullFunction.Rd | 5
man/numCases.Rd | 23
man/osppp2latlon.Rd | 8
man/osppp2merc.Rd | 8
man/paramprec.Rd | 18
man/paramprecbase.Rd | 22
man/parautocorr.Rd | 37
man/parsummary.Rd | 34
man/plot.fromSPDF.Rd | 6
man/plot.fromXYZ.Rd | 6
man/plot.lgcpAutocorr.Rd | 22
man/plot.lgcpPredict.Rd | 29
man/plot.lgcpQuantiles.Rd | 25
man/plot.lgcpZmat.Rd | 21
man/plot.lgcpgrid.Rd | 19
man/plot.mcmcdiag.Rd | 15
man/plot.mstppp.Rd | 9
man/plot.stppp.Rd | 6
man/plot.temporalAtRisk.Rd | 12
man/plotExceed.Rd | 6
man/plotExceed.array.Rd | 45
man/plotExceed.lgcpPredict.Rd | 34
man/plotit.Rd | 7
man/postcov.Rd | 24
man/postcov.lgcpPredictAggregateSpatialPlusParameters.Rd | 30
man/postcov.lgcpPredictMultitypeSpatialPlusParameters.Rd | 30
man/postcov.lgcpPredictSpatialOnlyPlusParameters.Rd | 30
man/postcov.lgcpPredictSpatioTemporalPlusParameters.Rd | 33
man/print.dump2dir.Rd | 6
man/print.fromFunction.Rd | 6
man/print.fromSPDF.Rd | 6
man/print.fromXYZ.Rd | 6
man/print.gridaverage.Rd | 6
man/print.lgcpPredict.Rd | 6
man/print.lgcpgrid.Rd | 12
man/print.mcmc.Rd | 9
man/print.mstppp.Rd | 6
man/print.stapp.Rd | 9
man/print.stppp.Rd | 6
man/print.temporalAtRisk.Rd | 12
man/priorpost.Rd | 37
man/quantile.lgcpPredict.Rd | 49
man/quantile.lgcpgrid.Rd | 16
man/raster.lgcpgrid.Rd | 15
man/rescale.mstppp.Rd | 9
man/rescale.stppp.Rd | 9
man/resetLoop.Rd | 4
man/rgauss.Rd | 28
man/roteffgain.Rd | 13
man/rotmat.Rd | 10
man/rr.Rd | 6
man/rr.lgcpPredict.Rd | 9
man/samplePosterior.Rd | 15
man/segProbs.Rd | 76 -
man/seintens.Rd | 9
man/seintens.lgcpPredict.Rd | 12
man/selectObsWindow.Rd | 15
man/selectObsWindow.default.Rd | 20
man/selectObsWindow.stppp.Rd | 28
man/serr.Rd | 6
man/serr.lgcpPredict.Rd | 9
man/setTxtProgressBar2.Rd | 13
man/setoutput.Rd | 19
man/showGrid.Rd | 12
man/showGrid.default.Rd | 11
man/showGrid.lgcpPredict.Rd | 19
man/showGrid.stppp.Rd | 18
man/smultiply.list.Rd | 13
man/sparsebase.Rd | 8
man/spatialAtRisk.Rd | 126 --
man/spatialAtRisk.SpatialGridDataFrame.Rd | 27
man/spatialAtRisk.SpatialPolygonsDataFrame.Rd | 29
man/spatialAtRisk.bivden.Rd | 24
man/spatialAtRisk.default.Rd | 31
man/spatialAtRisk.fromXYZ.Rd | 36
man/spatialAtRisk.function.Rd | 40
man/spatialAtRisk.im.Rd | 28
man/spatialAtRisk.lgcpgrid.Rd | 28
man/spatialIntensities.Rd | 9
man/spatialIntensities.fromSPDF.Rd | 16
man/spatialIntensities.fromXYZ.Rd | 16
man/spatialparsEst.Rd | 55 -
man/stGPrealisation.Rd | 27
man/stapp.Rd | 9
man/stapp.SpatialPolygonsDataFrame.Rd | 24
man/stapp.list.Rd | 20
man/stppp.Rd | 16
man/stppp.list.Rd | 13
man/stppp.ppp.Rd | 14
man/summary.lgcpgrid.Rd | 16
man/summary.mcmc.Rd | 12
man/target.and.grad.AggregateSpatialPlusPars.Rd | 26
man/target.and.grad.MultitypespatialPlusPars.Rd | 26
man/target.and.grad.SpatioTemporalPlusPars.Rd | 32
man/target.and.grad.spatial.Rd | 32
man/target.and.grad.spatialPlusPars.Rd | 25
man/target.and.grad.spatiotemporal.Rd | 38
man/tempRaster.Rd | 12
man/temporalAtRisk.Rd | 118 --
man/temporalAtRisk.function.Rd | 66 -
man/temporalAtRisk.numeric.Rd | 68 -
man/textsummary.Rd | 34
man/thetaEst.Rd | 55 -
man/toral.cov.mat.Rd | 18
man/touchingowin.Rd | 13
man/traceplots.Rd | 34
man/transblack.Rd | 4
man/transblue.Rd | 4
man/transgreen.Rd | 4
man/transred.Rd | 4
man/txtProgressBar2.Rd | 24
man/updateAMCMC.Rd | 17
man/updateAMCMC.andrieuthomsh.Rd | 18
man/updateAMCMC.constanth.Rd | 6
man/varfield.Rd | 9
man/varfield.lgcpPredict.Rd | 14
man/varfield.lgcpPredictINLA.Rd | 9
man/window.lgcpPredict.Rd | 15
man/xvals.Rd | 13
man/xvals.SpatialGridDataFrame.Rd | 16
man/xvals.default.Rd | 16
man/xvals.fromXYZ.Rd | 16
man/xvals.lgcpPredict.Rd | 9
man/yvals.Rd | 13
man/yvals.SpatialGridDataFrame.Rd | 16
man/yvals.default.Rd | 16
man/yvals.fromXYZ.Rd | 16
man/yvals.lgcpPredict.Rd | 9
man/zvals.Rd | 13
man/zvals.SpatialGridDataFrame.Rd | 16
man/zvals.default.Rd | 16
man/zvals.fromXYZ.Rd | 16
tests/fromSPDFTest.R | 2
tests/lgcpMethodsTest.R | 3
tests/mstpppClassTest.R | 1
tests/stpppClassTest.R | 1
398 files changed, 4464 insertions(+), 6115 deletions(-)
Title: Tools for Simulation Studies in Parallel with R
Diff between simsalapar versions 1.0-4 dated 2014-09-17 and 1.0-5 dated 2015-01-24
Description: Tools for setting up, conducting, and evaluating larger-scale
simulation studies, including parallel computations.
Author: Marius Hofert and Martin Maechler
Maintainer: Marius Hofert
DESCRIPTION | 17 +++---
MD5 | 35 ++++++------
NAMESPACE | 28 ++++++++--
R/array-stuff.R | 36 +++++--------
R/doApply.R | 4 -
R/graphics.R | 53 ++++++++++++-------
R/grid-stuff.R | 11 ++--
R/subjob.R | 17 ++----
demo/00Index | 1
demo/VaRsuperadd.R | 10 ++-
demo/rSeed-ex.R |only
demo/robcovMCD.R | 123 ++++++++++++++++++++++++++++++++++++---------
inst/xtraR/Sweave-prelim.R | 32 +++++++++--
man/array-stuff.Rd | 50 ++++++++++++------
man/doCallWE.Rd | 2
man/mayplot.Rd | 2
man/subjob.Rd | 94 +++++++++++++++++++---------------
man/varlist.Rd | 23 +++++---
tests/tstTGforecasts.R | 5 +
19 files changed, 354 insertions(+), 189 deletions(-)
Title: Political Science Computational Laboratory, Stanford University
Diff between pscl versions 1.4.6 dated 2014-08-27 and 1.4.8 dated 2015-01-24
Description: Bayesian analysis of item-response theory (IRT) models,
roll call analysis; computing highest density regions; maximum
likelihood estimation of zero-inflated and hurdle models for count
data; goodness-of-fit measures for GLMs; data sets used
in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from
Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman
pscl-1.4.6/pscl/inst/extdata/id1.RData |only
pscl-1.4.6/pscl/inst/extdata/id2.RData |only
pscl-1.4.8/pscl/DESCRIPTION | 13 ++-
pscl-1.4.8/pscl/MD5 | 74 +++++++++++-----------
pscl-1.4.8/pscl/NAMESPACE | 4 -
pscl-1.4.8/pscl/NEWS | 15 +++-
pscl-1.4.8/pscl/R/hurdle.R | 2
pscl-1.4.8/pscl/R/plot.ideal.r | 2
pscl-1.4.8/pscl/R/vuong.R | 76 +++++++++++++----------
pscl-1.4.8/pscl/inst/CITATION | 2
pscl-1.4.8/pscl/inst/doc/countreg.pdf |binary
pscl-1.4.8/pscl/inst/extdata/id1.rda |only
pscl-1.4.8/pscl/inst/extdata/id2.rda |only
pscl-1.4.8/pscl/man/AustralianElectionPolling.Rd | 5 -
pscl-1.4.8/pscl/man/admit.Rd | 2
pscl-1.4.8/pscl/man/bioChemists.Rd | 2
pscl-1.4.8/pscl/man/ca2006.Rd | 4 -
pscl-1.4.8/pscl/man/constrain.items.Rd | 2
pscl-1.4.8/pscl/man/extractRollCallObject.Rd | 2
pscl-1.4.8/pscl/man/hitmiss.Rd | 2
pscl-1.4.8/pscl/man/ideal.Rd | 69 ++++++++++----------
pscl-1.4.8/pscl/man/idealToMCMC.Rd | 2
pscl-1.4.8/pscl/man/odTest.Rd | 2
pscl-1.4.8/pscl/man/pR2.Rd | 2
pscl-1.4.8/pscl/man/partycodes.Rd | 2
pscl-1.4.8/pscl/man/plot.ideal.Rd | 3
pscl-1.4.8/pscl/man/plot.predict.ideal.Rd | 2
pscl-1.4.8/pscl/man/politicalInformation.Rd | 2
pscl-1.4.8/pscl/man/postProcess.Rd | 4 -
pscl-1.4.8/pscl/man/predict.ideal.Rd | 16 ----
pscl-1.4.8/pscl/man/predprob.ideal.Rd | 10 ---
pscl-1.4.8/pscl/man/presidentialElections.Rd | 2
pscl-1.4.8/pscl/man/readKH.Rd | 5 -
pscl-1.4.8/pscl/man/s109.Rd | 3
pscl-1.4.8/pscl/man/tracex.Rd | 19 +----
pscl-1.4.8/pscl/man/vuong.Rd | 8 ++
pscl-1.4.8/pscl/src/IDEAL.c | 50 +++++++++++++--
pscl-1.4.8/pscl/src/crossprod.c | 2
pscl-1.4.8/pscl/src/dtnorm.c | 10 +--
pscl-1.4.8/pscl/src/util.c | 45 ++++++-------
40 files changed, 250 insertions(+), 215 deletions(-)
Title: Nested Association Mapping analysis
Diff between NAM versions 1.0.2 dated 2015-01-15 and 1.0.2.1 dated 2015-01-24
Description: The NAM package was designed for association studies in nested association mapping (NAM) panels, but it also can handle biparental and random populations. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier
DESCRIPTION | 14 ++++++-------
MD5 | 11 +++++-----
R/MCreml.R |only
R/reference.R | 57 ++++++++++++++++++++++++-----------------------------
R/reml.R | 4 +--
man/NAM-package.Rd | 13 ++----------
man/reml.Rd | 7 +++---
7 files changed, 48 insertions(+), 58 deletions(-)