Title: Detection of Outliers in Time Series
Diff between tsoutliers versions 0.4 dated 2014-06-27 and 0.5 dated 2015-01-25
Description: Detection of outliers in time series following the
Chen and Liu (1993) procedure. Innovative outliers, additive outliers,
level shifts, temporary changes and seasonal level shifts are considered.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
tsoutliers-0.4/tsoutliers/R/jarque-bera-test.R |only
tsoutliers-0.4/tsoutliers/R/tsoutliers.R |only
tsoutliers-0.4/tsoutliers/inst/doc/CHANGES.txt |only
tsoutliers-0.4/tsoutliers/inst/doc/tsoutliers.pdf |only
tsoutliers-0.5/tsoutliers/DESCRIPTION | 20 +--
tsoutliers-0.5/tsoutliers/MD5 | 40 +++---
tsoutliers-0.5/tsoutliers/NAMESPACE | 5
tsoutliers-0.5/tsoutliers/R/JarqueBera-test.R |only
tsoutliers-0.5/tsoutliers/R/locate-outliers.R | 40 ++++--
tsoutliers-0.5/tsoutliers/R/outliers-effects.R | 3
tsoutliers-0.5/tsoutliers/R/outliers-regressors-arima.R | 2
tsoutliers-0.5/tsoutliers/R/outliers-tstatistics.R | 28 +++-
tsoutliers-0.5/tsoutliers/R/remove-outliers.R | 92 +++-------------
tsoutliers-0.5/tsoutliers/R/tso.R |only
tsoutliers-0.5/tsoutliers/build |only
tsoutliers-0.5/tsoutliers/inst/CHANGES |only
tsoutliers-0.5/tsoutliers/inst/doc/index.html | 21 ++-
tsoutliers-0.5/tsoutliers/inst/doc/tsoutliers-intro.R |only
tsoutliers-0.5/tsoutliers/inst/doc/tsoutliers-intro.Rnw |only
tsoutliers-0.5/tsoutliers/inst/doc/tsoutliers-intro.pdf |only
tsoutliers-0.5/tsoutliers/man/locate-outliers-loops.Rd | 6 -
tsoutliers-0.5/tsoutliers/man/locate-outliers.Rd | 12 --
tsoutliers-0.5/tsoutliers/man/outliers-tstatistics.Rd | 2
tsoutliers-0.5/tsoutliers/man/remove-outliers.Rd | 25 ++--
tsoutliers-0.5/tsoutliers/man/tsoutliers-package.Rd | 2
tsoutliers-0.5/tsoutliers/man/tsoutliers.Rd | 17 +-
tsoutliers-0.5/tsoutliers/vignettes |only
27 files changed, 147 insertions(+), 168 deletions(-)
Title: Spatio-Temporal Modeling of Large Data Using a Spectral SPDE
Approach
Diff between spate versions 1.3 dated 2013-12-29 and 1.4 dated 2015-01-25
Description: This package provides functionality for spatio-temporal modeling of large data sets. A Gaussian process in space and time is defined through a stochastic partial differential equation (SPDE). The SPDE is solved in the spectral space, and after discretizing in time and space, a linear Gaussian state space model is obtained. When doing inference, the main computational difficulty consists in evaluating the likelihood and in sampling from the full conditional of the spectral coefficients, or equivalently, the latent space-time process. In comparison to the traditional approach of using a spatio-temporal covariance function, the spectral SPDE approach is computationally advantageous. This package aims at providing tools for two different modeling approaches. First, the SPDE based spatio-temporal model can be used as a component in a customized hierarchical Bayesian model (HBM). The functions of the package then provide parameterizations of the process part of the model as well as computationally efficient algorithms needed for doing inference with the HBM. Alternatively, the adaptive MCMC algorithm implemented in the package can be used as an algorithm for doing inference without any additional modeling. The MCMC algorithm supports data that follow a Gaussian or a censored distribution with point mass at zero. Covariates can be included in the model through a regression term.
Author: Fabio Sigrist, Hans R. Kuensch, Werner A. Stahel
Maintainer: Fabio Sigrist
spate-1.3/spate/src/Temp_Makevars |only
spate-1.3/spate/vignettes/auto |only
spate-1.3/spate/vignettes/spate.pdf |only
spate-1.4/spate/DESCRIPTION | 17 ++++++++---------
spate-1.4/spate/MD5 | 19 +++++++++----------
spate-1.4/spate/NAMESPACE | 5 +++++
spate-1.4/spate/build/vignette.rds |binary
spate-1.4/spate/data/spateMCMC.RData |binary
spate-1.4/spate/data/spateMLE.RData |binary
spate-1.4/spate/inst/CITATION |only
spate-1.4/spate/inst/doc/spate_tutorial.pdf |binary
spate-1.4/spate/man/spate-package.Rd | 7 ++++---
spate-1.4/spate/tools |only
13 files changed, 26 insertions(+), 22 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Diff between mirtCAT versions 0.4 dated 2015-01-22 and 0.4.2 dated 2015-01-25
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers
DESCRIPTION | 6 +++---
MD5 | 6 +++---
NEWS | 2 +-
src/CAT_functions.cpp | 2 +-
4 files changed, 8 insertions(+), 8 deletions(-)
Title: R/Weka interface jars
Diff between RWekajars versions 3.7.11-1 dated 2014-04-26 and 3.7.12-1 dated 2015-01-25
Description: External jars required for package RWeka.
Author: Kurt Hornik [aut, cre],
University of Waikato [ctb, cph] (Weka Java library)
Maintainer: Kurt Hornik
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
configure | 14 +++++++-------
inst/java/weka.jar |binary
4 files changed, 16 insertions(+), 16 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-23 dated 2014-04-26 and 0.4-24 dated 2015-01-25
Description: An R interface to Weka (Version 3.7.12).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the Weka
jar is in a separate package RWekajars. For more information on
Weka see
Author: Kurt Hornik [aut, cre],
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik
CHANGELOG | 6 ++++++
DESCRIPTION | 14 +++++++-------
MD5 | 20 ++++++++++----------
R/arff.R | 2 +-
R/readers.R | 2 +-
build/vignette.rds |binary
inst/doc/RWeka.pdf |binary
inst/java/RWeka.jar |binary
java/Makefile | 11 ++---------
java/RWekaInterfaces.class |binary
man/Weka_classifier_trees.Rd | 2 +-
11 files changed, 28 insertions(+), 29 deletions(-)
Title: Rcpp Integration for the Armadillo Templated Linear Algebra
Library
Diff between RcppArmadillo versions 0.4.600.0 dated 2014-12-27 and 0.4.600.4.0 dated 2015-01-25
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo. Armadillo is licensed under the MPL 2.0, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 25 +++
DESCRIPTION | 8 -
MD5 | 62 ++++-----
R/RcppArmadillo.package.skeleton.R | 2
R/unit.test.R | 4
cleanup | 2
inst/NEWS.Rd | 10 +
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/examples/fastLm.r | 3
inst/include/armadillo_bits/Op_bones.hpp | 17 +-
inst/include/armadillo_bits/Proxy.hpp | 47 ------
inst/include/armadillo_bits/arma_version.hpp | 2
inst/include/armadillo_bits/fn_elem.hpp | 22 +--
inst/include/armadillo_bits/fn_find.hpp | 12 -
inst/include/armadillo_bits/fn_flip.hpp | 16 +-
inst/include/armadillo_bits/fn_vectorise.hpp | 9 -
inst/include/armadillo_bits/forward_bones.hpp | 9 +
inst/include/armadillo_bits/glue_times_meat.hpp | 37 -----
inst/include/armadillo_bits/mtOp_bones.hpp | 14 +-
inst/include/armadillo_bits/op_cumsum_bones.hpp | 10 +
inst/include/armadillo_bits/op_cumsum_meat.hpp | 82 +++++++++--
inst/include/armadillo_bits/op_dot_meat.hpp | 8 +
inst/include/armadillo_bits/op_flip_meat.hpp | 52 +++++--
inst/include/armadillo_bits/op_htrans_meat.hpp | 88 +++++-------
inst/include/armadillo_bits/op_sort_bones.hpp | 7 -
inst/include/armadillo_bits/op_sort_meat.hpp | 56 +++++---
inst/include/armadillo_bits/op_strans_meat.hpp | 144 +++++++++------------
inst/include/armadillo_bits/op_sum_meat.hpp | 45 +++---
inst/include/armadillo_bits/op_vectorise_bones.hpp | 6
inst/include/armadillo_bits/op_vectorise_meat.hpp | 9 -
man/RcppArmadillo-package.Rd | 2
32 files changed, 436 insertions(+), 374 deletions(-)
Title: Excel Connector for R
Diff between XLConnect versions 0.2-9 dated 2014-08-14 and 0.2-10 dated 2015-01-25
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI, Apache Commons
Codec),
Stephen Colebourne [ctb, cph] (Joda-Time Java library)
Maintainer: Martin Studer
XLConnect-0.2-10/XLConnect/DESCRIPTION | 21 +--
XLConnect-0.2-10/XLConnect/MD5 | 50 +++----
XLConnect-0.2-10/XLConnect/NAMESPACE | 13 -
XLConnect-0.2-10/XLConnect/NEWS | 8 +
XLConnect-0.2-10/XLConnect/R/workbook.createSheet.R | 77 +++++------
XLConnect-0.2-10/XLConnect/README.md | 4
XLConnect-0.2-10/XLConnect/build/vignette.rds |binary
XLConnect-0.2-10/XLConnect/inst/COPYRIGHTS | 18 --
XLConnect-0.2-10/XLConnect/inst/doc/XLConnect.Rnw | 12 +
XLConnect-0.2-10/XLConnect/inst/doc/XLConnect.pdf |binary
XLConnect-0.2-10/XLConnect/inst/doc/XLConnectImpatient.pdf |binary
XLConnect-0.2-10/XLConnect/inst/java/XLConnect-0.2-10.jar |only
XLConnect-0.2-10/XLConnect/inst/java/poi-3.11.jar |only
XLConnect-0.2-10/XLConnect/inst/java/poi-ooxml-3.11.jar |only
XLConnect-0.2-10/XLConnect/java/README | 13 -
XLConnect-0.2-10/XLConnect/man/XLConnect-package.Rd | 6
XLConnect-0.2-10/XLConnect/man/cellstyle-class.Rd | 4
XLConnect-0.2-10/XLConnect/man/readWorksheet-methods.Rd | 5
XLConnect-0.2-10/XLConnect/man/xlcFreeMemory.Rd | 4
XLConnect-0.2-10/XLConnect/man/xlcMemoryReport.Rd | 4
XLConnect-0.2-10/XLConnect/tests/run_tests.R | 74 ++++++++++
XLConnect-0.2-10/XLConnect/vignettes/XLConnect.Rnw | 12 +
XLConnect-0.2-9/XLConnect/R/checkNoException.R |only
XLConnect-0.2-9/XLConnect/R/rsrc.R |only
XLConnect-0.2-9/XLConnect/R/runUnitTests.R |only
XLConnect-0.2-9/XLConnect/inst/java/XLConnect-0.2-8.jar |only
XLConnect-0.2-9/XLConnect/inst/java/dom4j-1.6.1.jar |only
XLConnect-0.2-9/XLConnect/inst/java/poi-3.11-beta1.jar |only
XLConnect-0.2-9/XLConnect/inst/java/poi-ooxml-3.11-beta1.jar |only
XLConnect-0.2-9/XLConnect/inst/java/xml-apis-1.0.b2.jar |only
XLConnect-0.2-9/XLConnect/man/checkNoException.Rd |only
XLConnect-0.2-9/XLConnect/man/rsrc.Rd |only
XLConnect-0.2-9/XLConnect/man/runUnitTests.Rd |only
33 files changed, 184 insertions(+), 141 deletions(-)
Title: Standard Normal Homogeneity Test
Diff between snht versions 1.0 dated 2014-11-03 and 1.0.1 dated 2015-01-25
Description: Robust and non-robust SNHT tests for changepoint detection.
Author: Josh Browning
Maintainer: Josh Browning
DESCRIPTION | 10 -
MD5 | 32 ++--
NAMESPACE | 15 -
R/createCandidateMatrix.R |only
R/getPairs.R |only
R/getUniquePairs.R |only
R/pairwiseSNHT.R | 305 ++++++++++++++++-----------------------
R/removeSeasonalPeriod.R |only
R/robustSNHT.R | 201 +++++++++++++++++++------
R/robustSNHTunequal.R | 145 +++++++++++++-----
R/snht.R | 162 ++++++++++++++++----
R/unconfoundCandidateMatrix.R |only
README.md | 4
man/createCandidateMatrix.Rd |only
man/getPairs.Rd |only
man/getUniquePairs.Rd |only
man/pairwiseSNHT.Rd | 135 ++++++++++-------
man/removeSeasonalPeriod.Rd |only
man/robustSNHT.Rd |only
man/robustSNHTunequal.Rd |only
man/snht-package.Rd | 58 +++----
man/snht.Rd | 184 +++++++++++++----------
man/unconfoundCandidateMatrix.Rd |only
23 files changed, 757 insertions(+), 494 deletions(-)
Title: Expander Functions for Generating Full Gradient and Hessian from
Single- and Multi-Slot Base Distributions
Diff between RegressionFactory versions 0.7 dated 2014-12-01 and 0.7.1 dated 2015-01-25
More information about RegressionFactory at CRAN
Description: The expander functions rely on the mathematics developed for the Hessian-definiteness invariance theorem for linear projection transformations of variables, described in authors' paper, to generate the full, high-dimensional gradient and Hessian from the lower-dimensional derivative objects. This greatly relieves the computational burden of generating the regression-function derivatives, which in turn can be fed into any optimization routine that utilizes such derivatives. The theorem guarantees that Hessian definiteness is preserved, meaning that reasoning about this property can be performed in the low-dimensional space of the base distribution. This is often a much easier task than its equivalent in the full, high-dimensional space. Definiteness of Hessian can be useful in selecting optimization/sampling algorithms such as Newton-Raphson optimization or its sampling equivalent, the Stochastic Newton Sampler. Finally, in addition to being a computational tool, the regression expansion framework is of conceptual value by offering new opportunities to generate novel regression problems.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
RegressionFactory-0.7.1/RegressionFactory/ChangeLog |only
RegressionFactory-0.7.1/RegressionFactory/DESCRIPTION | 10 -
RegressionFactory-0.7.1/RegressionFactory/MD5 | 34 +++-
RegressionFactory-0.7.1/RegressionFactory/NAMESPACE | 6
RegressionFactory-0.7.1/RegressionFactory/R/expanders.R | 36 ++--
RegressionFactory-0.7.1/RegressionFactory/R/fbase.1par.R | 75 ++++++++--
RegressionFactory-0.7.1/RegressionFactory/R/fbase.2par.R |only
RegressionFactory-0.7.1/RegressionFactory/R/utils.R |only
RegressionFactory-0.7.1/RegressionFactory/build |only
RegressionFactory-0.7.1/RegressionFactory/inst |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase1.binomial.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase1.exponential.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase1.geometric.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase1.poisson.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase2.gamma.log.log.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase2.gaussian.identity.log.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/fbase2.inverse.gaussian.log.log.Rd |only
RegressionFactory-0.7.1/RegressionFactory/man/regfac.expand.1par.Rd | 8 -
RegressionFactory-0.7.1/RegressionFactory/man/regfac.expand.2par.Rd | 59 ++++++-
RegressionFactory-0.7.1/RegressionFactory/man/regfac.merge.Rd |only
RegressionFactory-0.7.1/RegressionFactory/vignettes |only
RegressionFactory-0.7/RegressionFactory/man/fbase.bern.ilogit.Rd |only
RegressionFactory-0.7/RegressionFactory/man/fbase.exp.exp.Rd |only
RegressionFactory-0.7/RegressionFactory/man/fbase.geo.ilogit.Rd |only
RegressionFactory-0.7/RegressionFactory/man/fbase.pois.exp.Rd |only
25 files changed, 171 insertions(+), 57 deletions(-)
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