Title: Leveraging Learning to Automatically Manage Algorithms
Diff between llama versions 0.7.2 dated 2014-09-20 and 0.8 dated 2015-01-31
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre],
Bernd Bischl [aut],
Barry Hurley [ctb],
Talal Rahwan [ctb]
Maintainer: Lars Kotthoff
llama-0.7.2/llama/R/featureFilter.R |only
llama-0.7.2/llama/man/featureFilter.Rd |only
llama-0.7.2/llama/tests/testthat/test.featureFilter.R |only
llama-0.8/llama/DESCRIPTION | 12
llama-0.8/llama/LICENSE | 2
llama-0.8/llama/MD5 | 124 ++---
llama-0.8/llama/NAMESPACE | 13
llama-0.8/llama/NEWS | 12
llama-0.8/llama/R/analysis.R | 2
llama-0.8/llama/R/bsFolds.R |only
llama-0.8/llama/R/classify.R | 102 +++-
llama-0.8/llama/R/classifyPairs.R | 120 +++--
llama-0.8/llama/R/cluster.R | 126 +++--
llama-0.8/llama/R/cvFolds.R | 31 -
llama-0.8/llama/R/helpers.R |only
llama-0.8/llama/R/imputeCensored.R | 22
llama-0.8/llama/R/input.R | 30 -
llama-0.8/llama/R/misc.R | 89 ++-
llama-0.8/llama/R/misclassificationPenalties.R | 49 --
llama-0.8/llama/R/parscores.R | 86 ++-
llama-0.8/llama/R/plot.R |only
llama-0.8/llama/R/regression.R | 116 +++-
llama-0.8/llama/R/regressionPairs.R | 146 ++++--
llama-0.8/llama/R/successes.R | 88 ++-
llama-0.8/llama/R/trainTest.R | 25 -
llama-0.8/llama/R/zzz.R | 5
llama-0.8/llama/data/satsolvers.rda |binary
llama-0.8/llama/inst/java/ShapleyValue.jar |binary
llama-0.8/llama/inst/manual/llama.pdf |binary
llama-0.8/llama/java/shapleyComputation/CoalitionValueCalculator.class |binary
llama-0.8/llama/java/shapleyComputation/Combinations.class |binary
llama-0.8/llama/java/shapleyComputation/ShapleyComputation.class |binary
llama-0.8/llama/man/analysis.Rd | 4
llama-0.8/llama/man/bsFolds.Rd |only
llama-0.8/llama/man/classify.Rd | 54 +-
llama-0.8/llama/man/classifyPairs.Rd | 60 +-
llama-0.8/llama/man/cluster.Rd | 57 +-
llama-0.8/llama/man/cvFolds.Rd | 23
llama-0.8/llama/man/helpers.Rd |only
llama-0.8/llama/man/imputeCensored.Rd | 4
llama-0.8/llama/man/input.Rd | 18
llama-0.8/llama/man/llama-package.Rd | 23
llama-0.8/llama/man/misc.Rd | 47 +-
llama-0.8/llama/man/misclassificationPenalties.Rd | 10
llama-0.8/llama/man/normalize.Rd | 4
llama-0.8/llama/man/parscores.Rd | 16
llama-0.8/llama/man/plot.Rd |only
llama-0.8/llama/man/regression.Rd | 58 +-
llama-0.8/llama/man/regressionPairs.Rd | 58 +-
llama-0.8/llama/man/successes.Rd | 20
llama-0.8/llama/man/trainTest.Rd | 25 -
llama-0.8/llama/tests/testthat/helper_mockLearners.R | 42 +
llama-0.8/llama/tests/testthat/helper_testData.R |only
llama-0.8/llama/tests/testthat/test.analysis.R | 2
llama-0.8/llama/tests/testthat/test.bsFolds.R |only
llama-0.8/llama/tests/testthat/test.classify.R | 138 ++++-
llama-0.8/llama/tests/testthat/test.classifyPairs.R | 97 +++-
llama-0.8/llama/tests/testthat/test.cluster.R | 149 +++++-
llama-0.8/llama/tests/testthat/test.cvFolds.R | 48 +-
llama-0.8/llama/tests/testthat/test.imputeCensored.R | 24 -
llama-0.8/llama/tests/testthat/test.input.R | 59 +-
llama-0.8/llama/tests/testthat/test.misc.R | 235 ++++++----
llama-0.8/llama/tests/testthat/test.misclassificationPenalties.R | 75 +--
llama-0.8/llama/tests/testthat/test.parscores.R | 163 +++---
llama-0.8/llama/tests/testthat/test.regression.R | 112 ++++
llama-0.8/llama/tests/testthat/test.regressionPairs.R | 112 ++++
llama-0.8/llama/tests/testthat/test.satsolvers.R |only
llama-0.8/llama/tests/testthat/test.successes.R | 136 +++--
llama-0.8/llama/tests/testthat/test.trainTest.R | 64 --
69 files changed, 2116 insertions(+), 1021 deletions(-)
Title: Fuzzy Clustering
Diff between fclust versions 1.0.1 dated 2014-03-26 and 1.1 dated 2015-01-31
Description: Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visualizing fuzzy clustering results
Author: Paolo Giordani, Maria Brigida Ferraro
Maintainer: Paolo Giordani
DESCRIPTION | 12 ++---
MD5 | 98 ++++++++++++++++++++++++++++++------------------
NAMESPACE | 5 +-
R/FKM.R | 12 ++++-
R/FKM.ent.R | 1
R/FKM.ent.noise.R |only
R/FKM.gk.R | 12 ++++-
R/FKM.gk.ent.R | 1
R/FKM.gk.ent.noise.R |only
R/FKM.gk.noise.R |only
R/FKM.med.R | 14 ++++--
R/FKM.med.noise.R |only
R/FKM.noise.R | 16 +++++--
R/FKM.pf.R |only
R/FKM.pf.noise.R |only
R/Fclust.R | 82 +++++++++++++++++++++++++++++++---------
R/Fclust.index.R | 2
R/Hraw.R | 4 -
R/VAT.R |only
R/VCV.R |only
R/VCV2.R |only
R/VIFCR.R |only
R/cl.memb.t.R | 14 +++---
R/plot.fclust.R |only
R/print.fclust.R |only
R/summary.fclust.R |only
man/FKM.Rd | 14 ++++--
man/FKM.ent.Rd | 17 ++++++--
man/FKM.ent.noise.Rd |only
man/FKM.gk.Rd | 11 +++--
man/FKM.gk.ent.Rd | 16 +++++--
man/FKM.gk.ent.noise.Rd |only
man/FKM.gk.noise.Rd |only
man/FKM.med.Rd | 16 +++++--
man/FKM.med.noise.Rd |only
man/FKM.noise.Rd | 10 +++-
man/FKM.pf.Rd |only
man/FKM.pf.noise.Rd |only
man/Fclust.Rd | 12 ++++-
man/Fclust.index.Rd | 15 +++++--
man/Hraw.Rd | 13 ++++--
man/MPC.Rd | 9 +++-
man/Mc.Rd | 36 ++++++++++++++---
man/PC.Rd | 9 +++-
man/PE.Rd | 13 ++++--
man/SIL.F.Rd | 11 ++++-
man/SIL.Rd | 11 ++++-
man/VAT.Rd |only
man/VCV.Rd |only
man/VCV2.Rd |only
man/VIFCR.Rd |only
man/XB.Rd | 11 ++++-
man/butterfly.Rd | 10 +++-
man/cl.memb.H.Rd | 7 ++-
man/cl.memb.Rd | 7 ++-
man/cl.memb.t.Rd | 9 +++-
man/cl.size.H.Rd | 6 +-
man/cl.size.Rd | 3 -
man/plot.fclust.Rd |only
man/print.fclust.Rd |only
man/summary.fclust.Rd |only
man/synt.data.Rd | 14 ++++--
man/unemployment.Rd | 10 ++--
63 files changed, 408 insertions(+), 155 deletions(-)
Title: Tools for Simulating and Plotting Quantities of Interest
Estimated From Cox Proportional Hazards Models
Diff between simPH versions 1.2.4 dated 2014-12-07 and 1.2.6.1 dated 2015-01-31
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud
DESCRIPTION | 24 +--
MD5 | 60 +++----
NAMESPACE | 3
NEWS | 16 +-
R/SurvExpand.R | 3
R/coxsimPoly.R | 2
R/coxsimSpline.R | 8 -
R/simGG.simlinear.R | 68 ++++----
R/simGG.simspline.R | 358 +++++++++++++++++++++++------------------------
R/smallUtils.R | 153 +++++++++++++++-----
README.md | 4
build/vignette.rds |binary
man/CarpenterFdaData.Rd | 3
man/GolubEUPData.Rd | 3
man/MinMaxLines.Rd | 3
man/SurvExpand.Rd | 5
man/coxsimInteract.Rd | 3
man/coxsimLinear.Rd | 3
man/coxsimPoly.Rd | 3
man/coxsimSpline.Rd | 3
man/coxsimtvc.Rd | 3
man/ggfitStrata.Rd | 3
man/setXl.Rd | 3
man/simGG.Rd | 3
man/simGG.siminteract.Rd | 3
man/simGG.simlinear.Rd | 3
man/simGG.simpoly.Rd | 3
man/simGG.simspline.Rd | 11 -
man/simGG.simtvc.Rd | 3
man/simPH.Rd | 3
man/tvc.Rd | 3
31 files changed, 439 insertions(+), 327 deletions(-)
Title: Flexible Cluster-Weighted Modeling
Diff between flexCWM versions 1.3 dated 2014-12-16 and 1.4 dated 2015-01-31
Description: Allows for maximum likelihood fitting of cluster-weighted models, a class of mixtures of regression models with random covariates.
Author: Mazza A., Punzo A., Ingrassia S.
Maintainer: Angelo Mazza
flexCWM-1.3/flexCWM/data/tourism.RData |only
flexCWM-1.3/flexCWM/man/tourism.Rd |only
flexCWM-1.4/flexCWM/DESCRIPTION | 10 +-
flexCWM-1.4/flexCWM/MD5 | 35 +++----
flexCWM-1.4/flexCWM/NAMESPACE | 10 +-
flexCWM-1.4/flexCWM/R/Extractors.R | 129 ++++++++++++++++++++++----
flexCWM-1.4/flexCWM/R/Gamma.R | 4
flexCWM-1.4/flexCWM/R/PostInit.R | 2
flexCWM-1.4/flexCWM/R/PostProbs.R | 14 +-
flexCWM-1.4/flexCWM/R/code.R | 47 +++++----
flexCWM-1.4/flexCWM/R/cwm.R | 74 +++++----------
flexCWM-1.4/flexCWM/R/familyY2.R | 3
flexCWM-1.4/flexCWM/R/plot.R | 36 +++----
flexCWM-1.4/flexCWM/R/summary.R | 47 +++++----
flexCWM-1.4/flexCWM/data/ExCWM.RData |only
flexCWM-1.4/flexCWM/man/ExCWM.Rd |only
flexCWM-1.4/flexCWM/man/cwm.Rd | 143 ++++++++++++-----------------
flexCWM-1.4/flexCWM/man/extractors.Rd |only
flexCWM-1.4/flexCWM/man/flexCWM-package.Rd | 8 -
flexCWM-1.4/flexCWM/man/plot.Rd | 32 ++++--
flexCWM-1.4/flexCWM/man/students.Rd | 12 ++
21 files changed, 353 insertions(+), 253 deletions(-)
Title: Extending R's Dendrogram Functionality
Diff between dendextend versions 0.17.5 dated 2014-09-22 and 0.18.3 dated 2015-01-31
Description: Offers a set of functions for extending
dendrogram objects in R, letting you visualize and compare trees of
hierarchical clusterings. You can (1) Adjust a trees graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [ctb] (imported code from his dendroextras package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Yoav Benjamini [ths]
Maintainer: Tal Galili
dendextend-0.17.5/dendextend/R/imports_stats.R |only
dendextend-0.17.5/dendextend/man/get_branches_attr.Rd |only
dendextend-0.17.5/dendextend/tests/test-all.r |only
dendextend-0.18.3/dendextend/ChangeLog | 755 +++++++++-
dendextend-0.18.3/dendextend/DESCRIPTION | 24
dendextend-0.18.3/dendextend/MD5 | 294 ++-
dendextend-0.18.3/dendextend/NAMESPACE | 36
dendextend-0.18.3/dendextend/NEWS | 109 +
dendextend-0.18.3/dendextend/R/DendSer.R | 2
dendextend-0.18.3/dendextend/R/all.equal.R |only
dendextend-0.18.3/dendextend/R/ape.R |only
dendextend-0.18.3/dendextend/R/attr_access.R | 119 +
dendextend-0.18.3/dendextend/R/bk_method.R | 2
dendextend-0.18.3/dendextend/R/branches_attr_by.R | 1
dendextend-0.18.3/dendextend/R/cor.dendlist.R |only
dendextend-0.18.3/dendextend/R/cutree.dendrogram.R | 84 -
dendextend-0.18.3/dendextend/R/dist_long.R |only
dendextend-0.18.3/dendextend/R/distinct_edges.R |only
dendextend-0.18.3/dendextend/R/get_nodes_xy.R | 1
dendextend-0.18.3/dendextend/R/ggdend.R |only
dendextend-0.18.3/dendextend/R/ggdendro.R |only
dendextend-0.18.3/dendextend/R/labels.R | 41
dendextend-0.18.3/dendextend/R/nleaves.R | 623 ++++----
dendextend-0.18.3/dendextend/R/noded_with_condition.R | 48
dendextend-0.18.3/dendextend/R/prune.R | 2
dendextend-0.18.3/dendextend/R/rainbow_fun.R | 2
dendextend-0.18.3/dendextend/R/rotate.R | 138 +
dendextend-0.18.3/dendextend/R/set.dendrogram.R | 3
dendextend-0.18.3/dendextend/R/stats_imports.R |only
dendextend-0.18.3/dendextend/R/tanglegram.R | 7
dendextend-0.18.3/dendextend/R/unbranch.R | 596 ++++---
dendextend-0.18.3/dendextend/R/untangle.R | 358 ++--
dendextend-0.18.3/dendextend/R/zzz.R | 6
dendextend-0.18.3/dendextend/README.md | 3
dendextend-0.18.3/dendextend/TODO | 29
dendextend-0.18.3/dendextend/build/vignette.rds |binary
dendextend-0.18.3/dendextend/inst/doc/introduction.R | 194 ++
dendextend-0.18.3/dendextend/inst/doc/introduction.Rmd | 325 ++++
dendextend-0.18.3/dendextend/inst/doc/introduction.html | 630 +++++++-
dendextend-0.18.3/dendextend/inst/tests/test-attr_access.R | 27
dendextend-0.18.3/dendextend/inst/tests/test-cut_lower_fun.R | 199 +-
dendextend-0.18.3/dendextend/inst/tests/test-cutree.dendrogram.R | 53
dendextend-0.18.3/dendextend/inst/tests/test-distinct_edges.R |only
dendextend-0.18.3/dendextend/inst/tests/test-set.dendrogram.R | 5
dendextend-0.18.3/dendextend/inst/tests/test-unbranch.R | 8
dendextend-0.18.3/dendextend/man/Bk.Rd | 2
dendextend-0.18.3/dendextend/man/Bk_permutations.Rd | 2
dendextend-0.18.3/dendextend/man/Bk_plot.Rd | 2
dendextend-0.18.3/dendextend/man/DendSer.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/FM_index.Rd | 2
dendextend-0.18.3/dendextend/man/FM_index_R.Rd | 2
dendextend-0.18.3/dendextend/man/FM_index_permutation.Rd | 2
dendextend-0.18.3/dendextend/man/FM_index_profdpm.Rd | 2
dendextend-0.18.3/dendextend/man/all.equal.dendrogram.Rd |only
dendextend-0.18.3/dendextend/man/all_couple_rotations_at_k.Rd | 2
dendextend-0.18.3/dendextend/man/all_unique.Rd | 2
dendextend-0.18.3/dendextend/man/as.dendlist.Rd | 2
dendextend-0.18.3/dendextend/man/as.phylo.dendrogram.Rd |only
dendextend-0.18.3/dendextend/man/as_hclust_fixed.Rd | 2
dendextend-0.18.3/dendextend/man/assign_dendextend_options.Rd | 2
dendextend-0.18.3/dendextend/man/assign_values_to_branches_edgePar.Rd | 7
dendextend-0.18.3/dendextend/man/assign_values_to_leaves_edgePar.Rd | 2
dendextend-0.18.3/dendextend/man/assign_values_to_leaves_nodePar.Rd | 2
dendextend-0.18.3/dendextend/man/assign_values_to_nodes_nodePar.Rd | 2
dendextend-0.18.3/dendextend/man/bakers_gamma_for_2_k_matrix.Rd | 2
dendextend-0.18.3/dendextend/man/branches_attr_by_clusters.Rd | 2
dendextend-0.18.3/dendextend/man/branches_attr_by_labels.Rd | 3
dendextend-0.18.3/dendextend/man/click_rotate.Rd | 6
dendextend-0.18.3/dendextend/man/collapse_branch.Rd |only
dendextend-0.18.3/dendextend/man/color_branches.Rd | 2
dendextend-0.18.3/dendextend/man/color_labels.Rd | 8
dendextend-0.18.3/dendextend/man/colored_bars.Rd | 2
dendextend-0.18.3/dendextend/man/cor.dendlist.Rd |only
dendextend-0.18.3/dendextend/man/cor_bakers_gamma.Rd | 6
dendextend-0.18.3/dendextend/man/cor_cophenetic.Rd | 6
dendextend-0.18.3/dendextend/man/count_terminal_nodes.Rd | 2
dendextend-0.18.3/dendextend/man/cut_lower_fun.Rd | 2
dendextend-0.18.3/dendextend/man/cutree-methods.Rd | 13
dendextend-0.18.3/dendextend/man/cutree_1h.dendrogram.Rd | 10
dendextend-0.18.3/dendextend/man/cutree_1k.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/d3dendro_options.Rd | 2
dendextend-0.18.3/dendextend/man/d3dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/dend_diff.Rd |only
dendextend-0.18.3/dendextend/man/dendextend-package.Rd | 2
dendextend-0.18.3/dendextend/man/dendextend_options.Rd | 2
dendextend-0.18.3/dendextend/man/dendlist.Rd | 2
dendextend-0.18.3/dendextend/man/dist.dendlist.Rd |only
dendextend-0.18.3/dendextend/man/dist_long.Rd |only
dendextend-0.18.3/dendextend/man/distinct_edges.Rd |only
dendextend-0.18.3/dendextend/man/duplicate_leaf.Rd | 2
dendextend-0.18.3/dendextend/man/entanglement.Rd | 6
dendextend-0.18.3/dendextend/man/fac2num.Rd | 2
dendextend-0.18.3/dendextend/man/fix_members_attr.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/flatten.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/flip_leaves.Rd | 2
dendextend-0.18.3/dendextend/man/get_branches_heights.Rd | 2
dendextend-0.18.3/dendextend/man/get_childrens_heights.Rd | 2
dendextend-0.18.3/dendextend/man/get_leaves_attr.Rd | 2
dendextend-0.18.3/dendextend/man/get_leaves_nodePar.Rd |only
dendextend-0.18.3/dendextend/man/get_nodes_attr.Rd | 10
dendextend-0.18.3/dendextend/man/get_nodes_xy.Rd | 3
dendextend-0.18.3/dendextend/man/get_root_branches_attr.Rd |only
dendextend-0.18.3/dendextend/man/ggdend.Rd |only
dendextend-0.18.3/dendextend/man/hang.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/heights_per_k.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/highlight_distinct_edges.Rd |only
dendextend-0.18.3/dendextend/man/identify.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/intersect_trees.Rd | 2
dendextend-0.18.3/dendextend/man/is.dendlist.Rd | 2
dendextend-0.18.3/dendextend/man/is.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/is.hclust.Rd | 2
dendextend-0.18.3/dendextend/man/is.natural.number.Rd | 2
dendextend-0.18.3/dendextend/man/is.phylo.Rd | 2
dendextend-0.18.3/dendextend/man/is_null_list.Rd | 2
dendextend-0.18.3/dendextend/man/labels-assign.Rd | 12
dendextend-0.18.3/dendextend/man/labels_colors.Rd | 2
dendextend-0.18.3/dendextend/man/ladderize.Rd |only
dendextend-0.18.3/dendextend/man/leaf_Colors.Rd | 2
dendextend-0.18.3/dendextend/man/lowest_common_branch.Rd | 2
dendextend-0.18.3/dendextend/man/match_order_by_labels.Rd | 2
dendextend-0.18.3/dendextend/man/match_order_dendrogram_by_old_order.Rd | 2
dendextend-0.18.3/dendextend/man/na_locf.Rd | 2
dendextend-0.18.3/dendextend/man/nleaves.Rd | 6
dendextend-0.18.3/dendextend/man/nnodes.Rd | 2
dendextend-0.18.3/dendextend/man/noded_with_condition.Rd | 3
dendextend-0.18.3/dendextend/man/order.dendrogram-assign.Rd | 2
dendextend-0.18.3/dendextend/man/order.hclust.Rd | 2
dendextend-0.18.3/dendextend/man/partition_leaves.Rd |only
dendextend-0.18.3/dendextend/man/pipe.Rd | 2
dendextend-0.18.3/dendextend/man/plot_horiz.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/prune.Rd | 6
dendextend-0.18.3/dendextend/man/prune_leaf.Rd | 2
dendextend-0.18.3/dendextend/man/pvclust_show_signif.Rd | 2
dendextend-0.18.3/dendextend/man/pvclust_show_signif_gradient.Rd | 2
dendextend-0.18.3/dendextend/man/raise.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/rank_branches.Rd | 2
dendextend-0.18.3/dendextend/man/rank_order.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/rect.dendrogram.Rd | 6
dendextend-0.18.3/dendextend/man/remove_branches_edgePar.Rd | 4
dendextend-0.18.3/dendextend/man/remove_leaves_nodePar.Rd | 2
dendextend-0.18.3/dendextend/man/remove_nodes_nodePar.Rd |only
dendextend-0.18.3/dendextend/man/rllply.Rd | 2
dendextend-0.18.3/dendextend/man/rotate.Rd | 23
dendextend-0.18.3/dendextend/man/rotate_DendSer.Rd | 2
dendextend-0.18.3/dendextend/man/sample.dendrogram.Rd | 2
dendextend-0.18.3/dendextend/man/set.Rd | 7
dendextend-0.18.3/dendextend/man/shuffle.Rd | 6
dendextend-0.18.3/dendextend/man/sort_2_clusters_vectors.Rd | 2
dendextend-0.18.3/dendextend/man/sort_dist_mat.Rd | 2
dendextend-0.18.3/dendextend/man/sort_levels_values.Rd | 2
dendextend-0.18.3/dendextend/man/tanglegram.Rd | 7
dendextend-0.18.3/dendextend/man/theme_dendro.Rd |only
dendextend-0.18.3/dendextend/man/unbranch.Rd | 6
dendextend-0.18.3/dendextend/man/unclass_dend.Rd | 2
dendextend-0.18.3/dendextend/man/untangle.Rd | 6
dendextend-0.18.3/dendextend/man/untangle_DendSer.Rd | 2
dendextend-0.18.3/dendextend/man/untangle_random_search.Rd | 2
dendextend-0.18.3/dendextend/man/untangle_step_rotate_1side.Rd | 2
dendextend-0.18.3/dendextend/man/untangle_step_rotate_2side.Rd | 2
dendextend-0.18.3/dendextend/man/which_leaf.Rd | 3
dendextend-0.18.3/dendextend/man/which_node.Rd |only
dendextend-0.18.3/dendextend/tests/test-all.R |only
dendextend-0.18.3/dendextend/vignettes/introduction.Rmd | 325 ++++
163 files changed, 4069 insertions(+), 1303 deletions(-)
Title: Cluster Analysis Extended Rousseeuw et al.
Diff between cluster versions 2.0.0 dated 2015-01-29 and 2.0.1 dated 2015-01-31
Description: Cluster analysis methods. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990).
Author: Martin Maechler [aut, cre],
Peter Rousseeuw [aut] (Fortran original),
Anja Struyf [aut] (S original),
Mia Hubert [aut] (S original),
Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000)),
Matthias Studer [ctb],
Pierre Roudier [ctb]
Maintainer: Martin Maechler
DESCRIPTION | 12 +++++------
MD5 | 14 ++++++-------
po/R-cluster.pot | 4 +--
po/cluster.pot | 10 ++++++---
po/update-me.sh | 5 ++--
src/pam.c | 19 +++++++++++------
tests/pam.R | 13 +++++++++---
tests/pam.Rout.save | 55 +++++++++++++++++++++++++++++-----------------------
8 files changed, 78 insertions(+), 54 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 2.1.1 dated 2014-06-02 and 2.1.3 dated 2015-01-31
Description: Extensive functions for the theory of L-moments (LMs) in addition to probability-weighted moments (PWMs), and parameter (p) estimation for numerous familiar and not-so-familiar distributions. Estimation of LMs for the same distributions is provided as are L-moment ratio diagrams. Estimation of LMs for right-tail and left-tail censoring by known or unknown threshold and also by indicator variable is available. Asymmetric trimmed LMs (TL-moments, TLMs) are supported as are numerical integrations to dynamically compute trajectories of select TLM ratios for TL-moment ratio diagram construction. LMs of residual (resid.) and reversed (rev.) resid. life are implemented along with 13 operators on quantile functions that are useful in reliability, lifetime, and survival analysis. Exact analytical bootstrap estimates of order statistics, LMs, and variances-covariances of LMs are provided. The Harri-Coble Tau34-squared Test for Normality is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asymmetric (Asy.) Exponential (Exp.) Power [L], Asy. Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen.) Exp. Poisson [L], Gen. Extreme Value [L], Gen. Lambda [L,TL], Gen. Logistic [L), Gen. Normal [L], Gen. Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Residual Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev. Gumbel [L+RC], Rice/Rician (L), Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. LMs have multivariate analogs; the sample L-comoments (LCMs) are implemented and might have considerable application with copulas because LCMs measure asymmetric association and higher comoments or comovements of variables.
Author: William Asquith
Maintainer: William Asquith
lmomco-2.1.1/lmomco/R/are.pargep.R |only
lmomco-2.1.3/lmomco/DESCRIPTION | 13
lmomco-2.1.3/lmomco/MD5 | 620 +++++++-------
lmomco-2.1.3/lmomco/NAMESPACE | 11
lmomco-2.1.3/lmomco/NEWS | 167 ++-
lmomco-2.1.3/lmomco/R/Lcomoment.Lk12.R | 24
lmomco-2.1.3/lmomco/R/Lcomoment.Wk.R | 21
lmomco-2.1.3/lmomco/R/add.lmomco.axis.R | 2
lmomco-2.1.3/lmomco/R/are.par.valid.R | 3
lmomco-2.1.3/lmomco/R/are.paraep4.valid.R | 7
lmomco-2.1.3/lmomco/R/are.parcau.valid.R | 4
lmomco-2.1.3/lmomco/R/are.paremu.valid.R | 8
lmomco-2.1.3/lmomco/R/are.parexp.valid.R | 4
lmomco-2.1.3/lmomco/R/are.pargam.valid.R | 10
lmomco-2.1.3/lmomco/R/are.pargep.valid.R |only
lmomco-2.1.3/lmomco/R/are.pargev.valid.R | 10
lmomco-2.1.3/lmomco/R/are.pargld.valid.R | 1
lmomco-2.1.3/lmomco/R/are.parglo.valid.R | 10
lmomco-2.1.3/lmomco/R/are.pargno.valid.R | 4
lmomco-2.1.3/lmomco/R/are.pargov.valid.R | 6
lmomco-2.1.3/lmomco/R/are.pargpa.valid.R | 10
lmomco-2.1.3/lmomco/R/are.pargum.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parkap.valid.R | 8
lmomco-2.1.3/lmomco/R/are.parkmu.valid.R | 6
lmomco-2.1.3/lmomco/R/are.parkur.valid.R | 15
lmomco-2.1.3/lmomco/R/are.parlap.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parlmrq.valid.R | 2
lmomco-2.1.3/lmomco/R/are.parln3.valid.R | 5
lmomco-2.1.3/lmomco/R/are.parnor.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parpe3.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parray.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parrevgum.valid.R | 2
lmomco-2.1.3/lmomco/R/are.parrice.valid.R | 6
lmomco-2.1.3/lmomco/R/are.parsla.valid.R | 4
lmomco-2.1.3/lmomco/R/are.parst3.valid.R | 6
lmomco-2.1.3/lmomco/R/are.partexp.valid.R | 2
lmomco-2.1.3/lmomco/R/are.partri.valid.R |only
lmomco-2.1.3/lmomco/R/are.parwak.valid.R | 1
lmomco-2.1.3/lmomco/R/are.parwei.valid.R | 9
lmomco-2.1.3/lmomco/R/cdfaep4.R | 4
lmomco-2.1.3/lmomco/R/cdfcau.R | 2
lmomco-2.1.3/lmomco/R/cdfemu.R | 2
lmomco-2.1.3/lmomco/R/cdfexp.R | 2
lmomco-2.1.3/lmomco/R/cdfgam.R | 2
lmomco-2.1.3/lmomco/R/cdfgev.R | 2
lmomco-2.1.3/lmomco/R/cdfgld.R | 2
lmomco-2.1.3/lmomco/R/cdfglo.R | 2
lmomco-2.1.3/lmomco/R/cdfgno.R | 2
lmomco-2.1.3/lmomco/R/cdfgov.R | 2
lmomco-2.1.3/lmomco/R/cdfgpa.R | 2
lmomco-2.1.3/lmomco/R/cdfgum.R | 2
lmomco-2.1.3/lmomco/R/cdfkap.R | 2
lmomco-2.1.3/lmomco/R/cdfkmu.R | 2
lmomco-2.1.3/lmomco/R/cdfkur.R | 6
lmomco-2.1.3/lmomco/R/cdflap.R | 2
lmomco-2.1.3/lmomco/R/cdfln3.R | 2
lmomco-2.1.3/lmomco/R/cdfnor.R | 2
lmomco-2.1.3/lmomco/R/cdfpe3.R | 2
lmomco-2.1.3/lmomco/R/cdfray.R | 2
lmomco-2.1.3/lmomco/R/cdfrevgum.R | 2
lmomco-2.1.3/lmomco/R/cdfrice.R | 2
lmomco-2.1.3/lmomco/R/cdfsla.R | 2
lmomco-2.1.3/lmomco/R/cdftri.R |only
lmomco-2.1.3/lmomco/R/cdfwak.R | 2
lmomco-2.1.3/lmomco/R/dat2bernquaf.R |only
lmomco-2.1.3/lmomco/R/dist.list.R | 4
lmomco-2.1.3/lmomco/R/freq.curve.all.R | 109 +-
lmomco-2.1.3/lmomco/R/genci.R | 24
lmomco-2.1.3/lmomco/R/headrick.sheng.lalpha.R |only
lmomco-2.1.3/lmomco/R/is.tri.R |only
lmomco-2.1.3/lmomco/R/lmom2par.R | 13
lmomco-2.1.3/lmomco/R/lmomgpaRC.R | 28
lmomco-2.1.3/lmomco/R/lmomtri.R |only
lmomco-2.1.3/lmomco/R/par2cdf.R | 3
lmomco-2.1.3/lmomco/R/par2cdf2.R | 4
lmomco-2.1.3/lmomco/R/par2pdf.R | 3
lmomco-2.1.3/lmomco/R/par2qua.R | 3
lmomco-2.1.3/lmomco/R/paremu.R | 24
lmomco-2.1.3/lmomco/R/partri.R |only
lmomco-2.1.3/lmomco/R/pdfaep4.R | 2
lmomco-2.1.3/lmomco/R/pdfcau.R | 2
lmomco-2.1.3/lmomco/R/pdfexp.R | 2
lmomco-2.1.3/lmomco/R/pdfgam.R | 2
lmomco-2.1.3/lmomco/R/pdfgev.R | 2
lmomco-2.1.3/lmomco/R/pdfgld.R | 2
lmomco-2.1.3/lmomco/R/pdfglo.R | 2
lmomco-2.1.3/lmomco/R/pdfgno.R | 2
lmomco-2.1.3/lmomco/R/pdfgov.R | 2
lmomco-2.1.3/lmomco/R/pdfgpa.R | 2
lmomco-2.1.3/lmomco/R/pdfgum.R | 2
lmomco-2.1.3/lmomco/R/pdfkap.R | 2
lmomco-2.1.3/lmomco/R/pdfkur.R | 12
lmomco-2.1.3/lmomco/R/pdflap.R | 2
lmomco-2.1.3/lmomco/R/pdflmrq.R | 2
lmomco-2.1.3/lmomco/R/pdfnor.R | 2
lmomco-2.1.3/lmomco/R/pdfpe3.R | 2
lmomco-2.1.3/lmomco/R/pdfray.R | 2
lmomco-2.1.3/lmomco/R/pdfrevgum.R | 2
lmomco-2.1.3/lmomco/R/pdfrice.R | 2
lmomco-2.1.3/lmomco/R/pdfsla.R | 2
lmomco-2.1.3/lmomco/R/pdftri.R |only
lmomco-2.1.3/lmomco/R/pdfwak.R | 16
lmomco-2.1.3/lmomco/R/pmoms.R | 4
lmomco-2.1.3/lmomco/R/prettydist.R | 2
lmomco-2.1.3/lmomco/R/pwmRC.R | 2
lmomco-2.1.3/lmomco/R/quacau.R | 5
lmomco-2.1.3/lmomco/R/quaemu.R | 2
lmomco-2.1.3/lmomco/R/quaexp.R | 5
lmomco-2.1.3/lmomco/R/quagam.R | 5
lmomco-2.1.3/lmomco/R/quagev.R | 5
lmomco-2.1.3/lmomco/R/quagld.R | 5
lmomco-2.1.3/lmomco/R/quaglo.R | 5
lmomco-2.1.3/lmomco/R/quagno.R | 5
lmomco-2.1.3/lmomco/R/quagov.R | 6
lmomco-2.1.3/lmomco/R/quagpa.R | 5
lmomco-2.1.3/lmomco/R/quagum.R | 5
lmomco-2.1.3/lmomco/R/quakap.R | 7
lmomco-2.1.3/lmomco/R/quakmu.R | 2
lmomco-2.1.3/lmomco/R/quakur.R | 5
lmomco-2.1.3/lmomco/R/qualap.R | 5
lmomco-2.1.3/lmomco/R/qualn3.R | 2
lmomco-2.1.3/lmomco/R/quanor.R | 2
lmomco-2.1.3/lmomco/R/quape3.R | 5
lmomco-2.1.3/lmomco/R/quaray.R | 5
lmomco-2.1.3/lmomco/R/quarevgum.R | 5
lmomco-2.1.3/lmomco/R/quarice.R | 2
lmomco-2.1.3/lmomco/R/quasla.R | 6
lmomco-2.1.3/lmomco/R/quatexp.R | 7
lmomco-2.1.3/lmomco/R/quatri.R |only
lmomco-2.1.3/lmomco/R/quawak.R | 18
lmomco-2.1.3/lmomco/R/supdist.R |only
lmomco-2.1.3/lmomco/R/theoLmoms.max.ostat.R | 24
lmomco-2.1.3/lmomco/R/theoTLmoms.R | 2
lmomco-2.1.3/lmomco/R/vec2par.R | 4
lmomco-2.1.3/lmomco/R/z.par2cdf.R | 2
lmomco-2.1.3/lmomco/R/z.par2qua.R | 2
lmomco-2.1.3/lmomco/README | 2
lmomco-2.1.3/lmomco/inst/ACKNOWLEDGEMENTS |only
lmomco-2.1.3/lmomco/inst/CITATION | 14
lmomco-2.1.3/lmomco/inst/ERRATA_FOR_ISBN9781463508418.txt | 9
lmomco-2.1.3/lmomco/man/Apwm2BpwmRC.Rd | 4
lmomco-2.1.3/lmomco/man/Bpwm2ApwmRC.Rd | 4
lmomco-2.1.3/lmomco/man/IRSrefunds.by.state.Rd | 3
lmomco-2.1.3/lmomco/man/Lcomoment.Lk12.Rd | 22
lmomco-2.1.3/lmomco/man/Lcomoment.Wk.Rd | 5
lmomco-2.1.3/lmomco/man/Lcomoment.coefficients.Rd | 7
lmomco-2.1.3/lmomco/man/Lcomoment.correlation.Rd | 41
lmomco-2.1.3/lmomco/man/Lcomoment.matrix.Rd | 10
lmomco-2.1.3/lmomco/man/TLmom.Rd | 2
lmomco-2.1.3/lmomco/man/TX38lgtrmFlow.Rd | 10
lmomco-2.1.3/lmomco/man/are.par.valid.Rd | 4
lmomco-2.1.3/lmomco/man/are.paraep4.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parcau.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.paremu.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parexp.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargam.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargep.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargev.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargld.valid.Rd | 10
lmomco-2.1.3/lmomco/man/are.parglo.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargno.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargov.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargpa.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.pargum.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parkap.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parkmu.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parkur.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parlap.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parlmrq.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parln3.valid.Rd | 4
lmomco-2.1.3/lmomco/man/are.parnor.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parpe3.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parray.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parrevgum.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parrice.valid.Rd | 4
lmomco-2.1.3/lmomco/man/are.parsla.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parst3.valid.Rd | 4
lmomco-2.1.3/lmomco/man/are.partexp.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.partri.valid.Rd |only
lmomco-2.1.3/lmomco/man/are.parwak.valid.Rd | 2
lmomco-2.1.3/lmomco/man/are.parwei.valid.Rd | 2
lmomco-2.1.3/lmomco/man/bfrlmomco.Rd | 2
lmomco-2.1.3/lmomco/man/cdf2lmom.Rd | 2
lmomco-2.1.3/lmomco/man/cdf2lmoms.Rd | 2
lmomco-2.1.3/lmomco/man/cdfemu.Rd | 3
lmomco-2.1.3/lmomco/man/cdfexp.Rd | 2
lmomco-2.1.3/lmomco/man/cdfgam.Rd | 2
lmomco-2.1.3/lmomco/man/cdfgno.Rd | 2
lmomco-2.1.3/lmomco/man/cdfkmu.Rd | 16
lmomco-2.1.3/lmomco/man/cdfln3.Rd | 4
lmomco-2.1.3/lmomco/man/cdfrevgum.Rd | 2
lmomco-2.1.3/lmomco/man/cdfrice.Rd | 2
lmomco-2.1.3/lmomco/man/cdfst3.Rd | 2
lmomco-2.1.3/lmomco/man/cdftri.Rd |only
lmomco-2.1.3/lmomco/man/cdfwei.Rd | 2
lmomco-2.1.3/lmomco/man/cmlmomco.Rd | 9
lmomco-2.1.3/lmomco/man/dat2bernqua.Rd | 8
lmomco-2.1.3/lmomco/man/dat2bernquaf.Rd |only
lmomco-2.1.3/lmomco/man/dist.list.Rd | 4
lmomco-2.1.3/lmomco/man/expect.max.ostat.Rd | 4
lmomco-2.1.3/lmomco/man/fliplmoms.Rd | 38
lmomco-2.1.3/lmomco/man/flo2f.Rd | 4
lmomco-2.1.3/lmomco/man/fpds2f.Rd | 6
lmomco-2.1.3/lmomco/man/freq.curve.all.Rd | 20
lmomco-2.1.3/lmomco/man/gen.freq.curves.Rd | 16
lmomco-2.1.3/lmomco/man/genci.Rd | 2
lmomco-2.1.3/lmomco/man/gini.mean.diff.Rd | 2
lmomco-2.1.3/lmomco/man/grv2prob.Rd | 2
lmomco-2.1.3/lmomco/man/headrick.sheng.lalpha.Rd |only
lmomco-2.1.3/lmomco/man/hlmomco.Rd | 4
lmomco-2.1.3/lmomco/man/is.ln3.Rd | 2
lmomco-2.1.3/lmomco/man/is.tri.Rd |only
lmomco-2.1.3/lmomco/man/lcomoms2.Rd | 4
lmomco-2.1.3/lmomco/man/lkhlmomco.Rd | 4
lmomco-2.1.3/lmomco/man/lmom.ub.Rd | 4
lmomco-2.1.3/lmomco/man/lmom2pwm.Rd | 2
lmomco-2.1.3/lmomco/man/lmom2vec.Rd | 2
lmomco-2.1.3/lmomco/man/lmomTLgld.Rd | 6
lmomco-2.1.3/lmomco/man/lmomcau.Rd | 2
lmomco-2.1.3/lmomco/man/lmomco-package.Rd |only
lmomco-2.1.3/lmomco/man/lmomcoBook.Rd | 4
lmomco-2.1.3/lmomco/man/lmomemu.Rd | 2
lmomco-2.1.3/lmomco/man/lmomexp.Rd | 2
lmomco-2.1.3/lmomco/man/lmomgep.Rd | 2
lmomco-2.1.3/lmomco/man/lmomgno.Rd | 4
lmomco-2.1.3/lmomco/man/lmomln3.Rd | 4
lmomco-2.1.3/lmomco/man/lmompe3.Rd | 2
lmomco-2.1.3/lmomco/man/lmomrevgum.Rd | 2
lmomco-2.1.3/lmomco/man/lmomrice.Rd | 4
lmomco-2.1.3/lmomco/man/lmoms.Rd | 4
lmomco-2.1.3/lmomco/man/lmoms.bernstein.Rd | 4
lmomco-2.1.3/lmomco/man/lmoms.bootbarvar.Rd | 2
lmomco-2.1.3/lmomco/man/lmomsRCmark.Rd | 6
lmomco-2.1.3/lmomco/man/lmomsla.Rd | 2
lmomco-2.1.3/lmomco/man/lmomst3.Rd | 2
lmomco-2.1.3/lmomco/man/lmomtri.Rd |only
lmomco-2.1.3/lmomco/man/lmrdia.Rd | 2
lmomco-2.1.3/lmomco/man/lmrdiscord.Rd | 2
lmomco-2.1.3/lmomco/man/lrv2prob.Rd | 4
lmomco-2.1.3/lmomco/man/lrzlmomco.Rd | 2
lmomco-2.1.3/lmomco/man/par2cdf2.Rd | 4
lmomco-2.1.3/lmomco/man/par2qua.Rd | 2
lmomco-2.1.3/lmomco/man/par2qua2.Rd | 2
lmomco-2.1.3/lmomco/man/parTLgld.Rd | 4
lmomco-2.1.3/lmomco/man/paraep4.Rd | 8
lmomco-2.1.3/lmomco/man/paremu.Rd | 2
lmomco-2.1.3/lmomco/man/pargep.Rd | 2
lmomco-2.1.3/lmomco/man/pargld.Rd | 6
lmomco-2.1.3/lmomco/man/pargno.Rd | 4
lmomco-2.1.3/lmomco/man/pargov.Rd | 2
lmomco-2.1.3/lmomco/man/pargpa.Rd | 2
lmomco-2.1.3/lmomco/man/parkmu.Rd | 2
lmomco-2.1.3/lmomco/man/parlap.Rd | 6
lmomco-2.1.3/lmomco/man/parln3.Rd | 4
lmomco-2.1.3/lmomco/man/parrevgum.Rd | 2
lmomco-2.1.3/lmomco/man/parrice.Rd | 2
lmomco-2.1.3/lmomco/man/parst3.Rd | 2
lmomco-2.1.3/lmomco/man/partri.Rd |only
lmomco-2.1.3/lmomco/man/pdfcau.Rd | 2
lmomco-2.1.3/lmomco/man/pdfexp.Rd | 2
lmomco-2.1.3/lmomco/man/pdfgep.Rd | 2
lmomco-2.1.3/lmomco/man/pdfgno.Rd | 2
lmomco-2.1.3/lmomco/man/pdfgpa.Rd | 2
lmomco-2.1.3/lmomco/man/pdfgum.Rd | 4
lmomco-2.1.3/lmomco/man/pdfln3.Rd | 4
lmomco-2.1.3/lmomco/man/pdfnor.Rd | 3
lmomco-2.1.3/lmomco/man/pdfpe3.Rd | 2
lmomco-2.1.3/lmomco/man/pdfrevgum.Rd | 2
lmomco-2.1.3/lmomco/man/pdfrice.Rd | 2
lmomco-2.1.3/lmomco/man/pdfst3.Rd | 2
lmomco-2.1.3/lmomco/man/pdftri.Rd |only
lmomco-2.1.3/lmomco/man/pfactor.bernstein.Rd | 2
lmomco-2.1.3/lmomco/man/plotlmrdia.Rd | 8
lmomco-2.1.3/lmomco/man/plotradarlmr.Rd | 2
lmomco-2.1.3/lmomco/man/pmoms.Rd | 6
lmomco-2.1.3/lmomco/man/pp.Rd | 2
lmomco-2.1.3/lmomco/man/prettydist.Rd | 3
lmomco-2.1.3/lmomco/man/prob2lrv.Rd | 4
lmomco-2.1.3/lmomco/man/pwm.Rd | 6
lmomco-2.1.3/lmomco/man/pwm.beta2alpha.Rd | 2
lmomco-2.1.3/lmomco/man/pwm.gev.Rd | 2
lmomco-2.1.3/lmomco/man/pwm.pp.Rd | 2
lmomco-2.1.3/lmomco/man/pwm.ub.Rd | 8
lmomco-2.1.3/lmomco/man/pwm2lmom.Rd | 39
lmomco-2.1.3/lmomco/man/pwmLC.Rd | 8
lmomco-2.1.3/lmomco/man/pwmRC.Rd | 4
lmomco-2.1.3/lmomco/man/qlmomco.Rd | 2
lmomco-2.1.3/lmomco/man/qua2ci.Rd | 4
lmomco-2.1.3/lmomco/man/quagam.Rd | 2
lmomco-2.1.3/lmomco/man/quagep.Rd | 5
lmomco-2.1.3/lmomco/man/quagld.Rd | 2
lmomco-2.1.3/lmomco/man/quagno.Rd | 4
lmomco-2.1.3/lmomco/man/quagov.Rd | 2
lmomco-2.1.3/lmomco/man/qualn3.Rd | 4
lmomco-2.1.3/lmomco/man/quarevgum.Rd | 2
lmomco-2.1.3/lmomco/man/quarice.Rd | 2
lmomco-2.1.3/lmomco/man/quast3.Rd | 2
lmomco-2.1.3/lmomco/man/quatri.Rd |only
lmomco-2.1.3/lmomco/man/ralmomco.Rd | 4
lmomco-2.1.3/lmomco/man/reslife.lmoms.Rd | 4
lmomco-2.1.3/lmomco/man/riglmomco.Rd | 6
lmomco-2.1.3/lmomco/man/rmlmomco.Rd | 10
lmomco-2.1.3/lmomco/man/rmvarlmomco.Rd | 4
lmomco-2.1.3/lmomco/man/rralmomco.Rd | 4
lmomco-2.1.3/lmomco/man/rreslife.lmoms.Rd | 2
lmomco-2.1.3/lmomco/man/rrmlmomco.Rd | 6
lmomco-2.1.3/lmomco/man/rrmvarlmomco.Rd | 2
lmomco-2.1.3/lmomco/man/sentiv.curve.Rd | 10
lmomco-2.1.3/lmomco/man/stttlmomco.Rd | 8
lmomco-2.1.3/lmomco/man/supdist.Rd |only
lmomco-2.1.3/lmomco/man/tau34sq.normtest.Rd | 4
lmomco-2.1.3/lmomco/man/theoLmoms.max.ostat.Rd | 14
lmomco-2.1.3/lmomco/man/theoTLmoms.Rd | 3
lmomco-2.1.3/lmomco/man/tlmrgev.Rd | 2
lmomco-2.1.3/lmomco/man/tlmrgno.Rd | 2
lmomco-2.1.3/lmomco/man/tlmrln3.Rd | 5
lmomco-2.1.3/lmomco/man/tttlmomco.Rd | 8
lmomco-2.1.3/lmomco/man/vec2lmom.Rd | 4
lmomco-2.1.3/lmomco/man/vec2par.Rd | 2
lmomco-2.1.3/lmomco/man/vec2pwm.Rd | 4
lmomco-2.1.3/lmomco/man/x2xlo.Rd | 6
lmomco-2.1.3/lmomco/man/z.par2cdf.Rd | 2
lmomco-2.1.3/lmomco/man/z.par2qua.Rd | 2
323 files changed, 1272 insertions(+), 1037 deletions(-)
Title: Model Selection and Post-hoc Analysis for (G)LMER Models
Diff between LMERConvenienceFunctions versions 2.5 dated 2013-12-14 and 2.10 dated 2015-01-31
More information about LMERConvenienceFunctions at CRAN
Description: The main function of the package is to perform backward selection of fixed effects, forward fitting of the random effects, and post-hoc analysis using parallel capabilities. Other functionality includes the computation of ANOVAs with upper- or lower-bound p-values and R-squared values for each model term, model criticism plots, data trimming on model residuals, and data visualization. The data to run examples is contained in package LCF_data.
Author: Antoine Tremblay, Dalhousie University, and Johannes Ransijn, University of Copenhagen
Maintainer: "Antoine Tremblay, Dalhousie University"
DESCRIPTION | 16 ++++++---------
MD5 | 31 +++++++++++++++--------------
NAMESPACE | 8 ++++++-
NEWS | 7 ++++++
R/adjust.se.R |only
R/ffRanefLMER.fnc.R | 34 ++++++++++++++++----------------
R/mcposthoc.fnc.R | 3 --
R/plotDensity3d.fnc.R | 5 ----
R/plotLMER3d.fnc.R | 13 +-----------
R/plotRaw3d.fnc.R | 13 +-----------
man/LMERConvenienceFunctions-package.Rd | 22 ++++++++++----------
man/bfFixefLMER_F.fnc.Rd | 3 --
man/ffRanefLMER.fnc.Rd | 1
man/fitLMER.fnc.Rd | 3 +-
man/pamer.fnc.Rd | 3 --
man/plotLMER3d.fnc.Rd | 2 -
man/relLik.Rd | 5 ++++
17 files changed, 80 insertions(+), 89 deletions(-)
Permanent link
Title: Tools for Easily Combining and Cleaning Data Sets
Diff between DataCombine versions 0.2.7.1 dated 2014-12-08 and 0.2.8.3 dated 2015-01-31
Description: Tools for combining and cleaning data sets, particularly
with grouped and time series data.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud
DESCRIPTION | 24 ++++++----
MD5 | 65 +++++++++++++++-------------
NAMESPACE | 6 ++
NEWS | 32 +++++++++++++-
R/DropNA.R | 2
R/FillIn.R | 106 ++++++++++++++++++++++++++++++++++++++++++-----
R/PercChange.R | 55 +++++++++++++++---------
R/TimeFill.R | 42 +++++++++---------
R/internals.R | 6 +-
R/slide.R | 119 ++++++++++++++++++++++++++++-------------------------
R/utils.R | 73 ++++++++++++++++++++++----------
README.md | 7 ++-
man/CountSpell.Rd | 10 ++--
man/DropNA.Rd | 3 -
man/FillDown.Rd | 16 +++++--
man/FillIn.Rd | 3 -
man/FindReplace.Rd | 32 +++++++++-----
man/InsertRow.Rd | 3 -
man/MoveFront.Rd | 3 -
man/NaVar.Rd | 3 -
man/PercChange.Rd | 36 +++++++++++-----
man/SpreadDummy.Rd | 8 +--
man/StartEnd.Rd | 10 ++--
man/TimeExpand.Rd |only
man/TimeFill.Rd | 3 -
man/VarDrop.Rd | 3 -
man/dMerge.Rd | 31 +++++++++----
man/grepl.sub.Rd | 3 -
man/rmExcept.Rd | 3 -
man/shift.Rd | 3 -
man/shiftMA.Rd | 3 -
man/slide.Rd | 10 +++-
man/slideMA.Rd | 9 ++--
tests |only
34 files changed, 487 insertions(+), 245 deletions(-)
Title: Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Diff between d3Network versions 0.5.1 dated 2014-07-13 and 0.5.2.1 dated 2015-01-31
Description: This packages is intended to make it easy to create D3 JavaScript
network, tree, dendrogram, and Sankey graphs from R using data frames.
!!! NOTE: Active development has moved to the networkD3 package. !!!
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
d3Network-0.5.1/d3Network/README.md |only
d3Network-0.5.1/d3Network/data/MisLinks.tab.gz |only
d3Network-0.5.1/d3Network/data/MisNodes.tab.gz |only
d3Network-0.5.2.1/d3Network/DESCRIPTION | 9 +++++----
d3Network-0.5.2.1/d3Network/MD5 | 11 +++++------
d3Network-0.5.2.1/d3Network/NEWS | 9 +++++++++
d3Network-0.5.2.1/d3Network/R/templates.R | 6 +++---
d3Network-0.5.2.1/d3Network/data/MisLinks.tab |only
d3Network-0.5.2.1/d3Network/data/MisNodes.tab |only
9 files changed, 22 insertions(+), 13 deletions(-)
Title: Bayesian Analysis of Censored Regression Models Under Scale
Mixture of Skew Normal Distributions
Diff between BayesCR versions 1.0 dated 2013-11-02 and 2.0 dated 2015-01-31
Description: Propose a parametric fit for censored linear regression models based on SMSN distributions, from a Bayesian perspective. Also, generates SMSN random variables.
Author: Aldo M. Garay
Maintainer: Aldo M. Garay
BayesCR-1.0/BayesCR/R/GibbsTruncSMN.r |only
BayesCR-1.0/BayesCR/R/Utilitarios.r |only
BayesCR-1.0/BayesCR/data/wage.rate.txt.gz |only
BayesCR-1.0/BayesCR/man/wage.rate.Rd |only
BayesCR-2.0/BayesCR/DESCRIPTION | 24 -
BayesCR-2.0/BayesCR/MD5 | 22 -
BayesCR-2.0/BayesCR/NAMESPACE | 13
BayesCR-2.0/BayesCR/R/Bayes.CR.r | 467 ++++++++++++++++++++---------
BayesCR-2.0/BayesCR/R/Criterios.R |only
BayesCR-2.0/BayesCR/R/GibbsAssim.R |only
BayesCR-2.0/BayesCR/R/GibbsSim.r |only
BayesCR-2.0/BayesCR/R/SMSNloglik.r |only
BayesCR-2.0/BayesCR/R/UtilitariosAssim.R |only
BayesCR-2.0/BayesCR/R/UtilitariosSim.r |only
BayesCR-2.0/BayesCR/R/gerarSMSN.R |only
BayesCR-2.0/BayesCR/data/motorettes.txt.gz |only
BayesCR-2.0/BayesCR/man/Bayes.CR.Rd | 56 +--
BayesCR-2.0/BayesCR/man/motorettes.Rd |only
BayesCR-2.0/BayesCR/man/rSMSN.Rd |only
19 files changed, 394 insertions(+), 188 deletions(-)
Title: A System for Embedded Scientific Computing and Reproducible
Research with R
Diff between opencpu versions 1.4.5 dated 2014-11-08 and 1.4.6 dated 2015-01-31
Description: The OpenCPU system exposes an HTTP API for embedded scientific
computing with R. This provides scalable foundations for integrating R
based analysis and visualization modules into pipelines, web applications
or big data infrastructures. The OpenCPU server can run either as a
single-user development server within the interactive R session, or as a
high performance multi-user cloud server that builds on Linux, Nginx and
rApache. The current R package forms the core of the system. When loaded
in R, it automatically initiates the single-user server and displays the
web address in the console. Visit the OpenCPU website for detailed
information and documentation on the API.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 40 +++++++++----------
MD5 | 23 +++++------
NAMESPACE | 3 -
NEWS | 8 ++-
R/httpget_object.R | 92 ++++++++++++++++++++++----------------------
R/opencpu.R | 89 +++++++++++++++++++++---------------------
R/rhttpd.R | 56 +++++++++++++++-----------
inst/CITATION |only
inst/doc/opencpu-paper.pdf |binary
inst/doc/opencpu-server.pdf |binary
man/cleanup.Rd | 3 -
man/opencpu.Rd | 5 +-
man/rhttpd.Rd | 5 +-
13 files changed, 169 insertions(+), 155 deletions(-)
More information about multiAssetOptions at CRAN
Permanent link
Title: Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Diff between wgaim versions 1.4-3 dated 2014-09-03 and 1.4-5 dated 2015-01-31
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor
Maintainer: Julian Taylor
wgaim-1.4-3/wgaim/R/wgaim7.R |only
wgaim-1.4-5/wgaim/DESCRIPTION | 12 ++++++------
wgaim-1.4-5/wgaim/MD5 | 20 ++++++++++----------
wgaim-1.4-5/wgaim/NAMESPACE | 1 +
wgaim-1.4-5/wgaim/R/wgaim8.R |only
wgaim-1.4-5/wgaim/data/genoCxR.RData |binary
wgaim-1.4-5/wgaim/data/genoRxK.RData |binary
wgaim-1.4-5/wgaim/data/genoSxT.RData |binary
wgaim-1.4-5/wgaim/inst/NEWS.Rd | 9 +++++++--
wgaim-1.4-5/wgaim/inst/doc/wgaim.pdf |binary
wgaim-1.4-5/wgaim/man/cross2int.Rd | 14 ++++++--------
wgaim-1.4-5/wgaim/man/wgaim.asreml.Rd | 3 +--
12 files changed, 31 insertions(+), 28 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Diff between mixlm versions 1.0.8 dated 2015-01-21 and 1.0.8.1 dated 2015-01-31
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland
mixlm-1.0.8.1/mixlm/DESCRIPTION | 8
mixlm-1.0.8.1/mixlm/MD5 | 24
mixlm-1.0.8.1/mixlm/NAMESPACE | 42
mixlm-1.0.8.1/mixlm/R/borrowed.R | 480 ++---
mixlm-1.0.8.1/mixlm/R/glm.R | 270 +--
mixlm-1.0.8.1/mixlm/R/lm.R | 877 +++++-----
mixlm-1.0.8.1/mixlm/R/mixlm.R | 41
mixlm-1.0.8.1/mixlm/R/statistics.R | 2319 +++++++++++++--------------
mixlm-1.0.8.1/mixlm/R/utilities.R | 214 +-
mixlm-1.0.8.1/mixlm/man/Anova.Rd | 26
mixlm-1.0.8.1/mixlm/man/anova.lmm.Rd |only
mixlm-1.0.8.1/mixlm/man/lm.Rd | 10
mixlm-1.0.8.1/mixlm/man/print.summary.lmm.Rd |only
mixlm-1.0.8/mixlm/man/anova.lm.Rd |only
mixlm-1.0.8/mixlm/man/print.summary.lm.Rd |only
15 files changed, 2168 insertions(+), 2143 deletions(-)