Sun, 01 Feb 2015

Package zoib updated to version 1.1 with previous version 1.0 dated 2014-06-04

Title: Bayesian Inference for Zero/One Inflated Beta Regression
Description: zoib fits beta regression and zero or one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS
Author: Fang Liu with contributions from Yunchuan Kong
Maintainer: Fang Liu

Diff between zoib versions 1.0 dated 2014-06-04 and 1.1 dated 2015-02-01

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 40 files changed, 427 insertions(+), 290 deletions(-)

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Package multicon updated to version 1.6 with previous version 1.5 dated 2015-01-08

Title: Multivariate Constructs
Description: Includes functions designed to examine relationships among multivariate constructs (e.g., personality). This includes functions for profile (within-person) analysis, dealing with large numbers of analyses, lens model analyses, and structural summary methods for data with circumplex structure. The package also includes functions for graphically comparing and displaying group means.
Author: Ryne A. Sherman
Maintainer: Ryne A. Sherman

Diff between multicon versions 1.5 dated 2015-01-08 and 1.6 dated 2015-02-01

 DESCRIPTION              |    8 ++++----
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New package ICAFF with initial version 1.0
Package: ICAFF
Type: Package
Title: Imperialist Competitive Algorithm
Version: 1.0
Date: 2014-12-12
Depends: R (>= 2.10.0)
Author: Farimah Houshmand , Farzad Eskandari Ph.D.
Maintainer: Farimah Houshmand
Description: Imperialist Competitive Algorithm (ICA) is a computational method that is used to solve optimization problems of different types and it is the mathematical model and the computer simulation of human social evolution. The package provides a minimum value for the cost function and the best value for the optimization variables by Imperialist Competitive Algorithm. Users can easily define their own objective function depending on the problem at hand. This version has been successfully applied to solve optimization problems, for continuous functions.
License: GPL (>= 2)
Repository: CRAN
Packaged: 2015-02-01 21:00:03 UTC; ferya
NeedsCompilation: no
Date/Publication: 2015-02-02 01:34:41

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Package car updated to version 2.0-24 with previous version 2.0-22 dated 2014-11-18

Title: Companion to Applied Regression
Description: This package accompanies J. Fox and S. Weisberg, An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Rafael Laboissiere [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], William Venables [ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox

Diff between car versions 2.0-22 dated 2014-11-18 and 2.0-24 dated 2015-02-01

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Package lmomRFA updated to version 3.0-1 with previous version 3.0 dated 2014-01-15

Title: Regional frequency analysis using L-moments
Description: Functions for regional frequency analysis using the methods of J. R. M. Hosking and J. R. Wallis (1997), "Regional frequency analysis: an approach based on L-moments".
Author: J. R. M. Hosking
Maintainer: J. R. M. Hosking

Diff between lmomRFA versions 3.0 dated 2014-01-15 and 3.0-1 dated 2015-02-01

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Package lmom updated to version 2.5 with previous version 2.4 dated 2014-03-24

Title: L-moments
Description: Functions related to L-moments: computation of L-moments and trimmed L-moments of distributions and data samples; parameter estimation; L-moment ratio diagram; plot vs. quantiles of an extreme-value distribution.
Author: J. R. M. Hosking
Maintainer: J. R. M. Hosking

Diff between lmom versions 2.4 dated 2014-03-24 and 2.5 dated 2015-02-01

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New package hbm with initial version 1.0
Package: hbm
Type: Package
Title: Hierarchical Block Matrix Analysis
Version: 1.0
Date: 2015-01-25
Author: Yoli Shavit
Maintainer: Yoli Shavit
Description: A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.
License: GPL (>= 2)
Depends: R (>= 3.0.2)
Imports: Matrix, foreach, doParallel
Packaged: 2015-02-01 18:05:45 UTC; ys388
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-01 19:50:29

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Package CompRandFld updated to version 1.0.3-4 with previous version 1.0.3-3 dated 2015-01-15

Title: Composite-Likelihood Based Analysis of Random Fields
Description: A set of procedures for the analysis of Random Fields using likelihood and non-standard likelihood methods is provided. Spatial analysis often involves dealing with large dataset. Therefore even simple studies may be too computationally demanding. Composite likelihood inference is emerging as a useful tool for mitigating such computational problems. This methodology shows satisfactory results when compared with other techniques such as the tapering method. Moreover, composite likelihood (and related quantities) have some useful properties similar to those of the standard likelihood.
Author: Simone Padoan[aut, cre] , Moreno Bevilacqua[aut]
Maintainer: Simone Padoan

Diff between CompRandFld versions 1.0.3-3 dated 2015-01-15 and 1.0.3-4 dated 2015-02-01

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Package VdgRsm updated to version 1.4 with previous version 1.3 dated 2014-11-29

Title: Variance Dispersion, Fraction of Design Space Plots, Designs, and Contour Plots
Description: This package creates variance dispersion graphs (VDGs), fraction of design space (FDS) plots, and contour of SPVs for second-order model designs in spherical or cuboidal regions. The package also generates some response surface designs.
Author: Patchanok Srisuradetchai, John J. Borkowski
Maintainer: Patchanok Srisuradetchai

Diff between VdgRsm versions 1.3 dated 2014-11-29 and 1.4 dated 2015-02-01

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Package GWmodel updated to version 1.2-5 with previous version 1.2-3 dated 2014-05-12

Title: Geographically-Weighted Models
Description: In GWmodel, we introduce techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. GWmodel includes functions to calibrate: GW summary statistics, GW principal components analysis, GW discriminant analysis and various forms of GW regression; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Isabella Gollini[ctb]
Maintainer: Binbin Lu

Diff between GWmodel versions 1.2-3 dated 2014-05-12 and 1.2-5 dated 2015-02-01

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Package DFIT updated to version 1.0-2 with previous version 1.0-1 dated 2014-07-15

Title: Differential Functioning of Items and Tests
Description: A set of functions to perform Raju, van der Linden and Fleer's (1995) Differential Functioning of Items and Tests (DFIT) analyses. It includes functions to use the Monte Carlo Item Parameter Replication approach (Oshima, Raju, & Nanda, 2006) for obtaining the associated statistical significance tests cut-off points. They may also be used for a priori and post-hoc power calculations.
Author: Victor H. Cervantes
Maintainer: Victor H. Cervantes

Diff between DFIT versions 1.0-1 dated 2014-07-15 and 1.0-2 dated 2015-02-01

 DESCRIPTION   |   15 +++++++--------
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Package curl updated to version 0.5 with previous version 0.4 dated 2015-01-08

Title: A Connection Interface to Libcurl
Description: The curl() function provides a drop-in replacement for base url() with better performance and support for http 2.0, ssl (https://, ftps://), gzip, deflate and other libcurl goodies. This interface is implemented using the RConnection API in order to support incremental processing of both binary and text streams. If you are looking for a more-user-friendly http client, try the RCurl or httr packages instead.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms

Diff between curl versions 0.4 dated 2015-01-08 and 0.5 dated 2015-02-01

 DESCRIPTION |   13 +++++++------
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Package bizdays updated to version 0.2.1 with previous version 0.1.5 dated 2014-06-16

Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas
Maintainer: Wilson Freitas

Diff between bizdays versions 0.1.5 dated 2014-06-16 and 0.2.1 dated 2015-02-01

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Package birk updated to version 1.3.0 with previous version 1.2 dated 2014-11-07

Title: MA Birk's Functions
Description: This is a compilation of functions that I found useful to make. It currently includes a unit of measurement conversion function, a Q10 calculator for temperature dependence of chemical and biological rates, and some miscellaneous wrapper functions to make R code shorter and faster to write.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk

Diff between birk versions 1.2 dated 2014-11-07 and 1.3.0 dated 2015-02-01

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 birk-1.3.0/birk/R/geom_mean.R            |   23 +++++-
 birk-1.3.0/birk/R/range_seq.R            |only
 birk-1.3.0/birk/R/se.R                   |   18 ++++
 birk-1.3.0/birk/man/Q10calc.Rd           |only
 birk-1.3.0/birk/man/birk.Rd              |only
 birk-1.3.0/birk/man/conv_unit.Rd         |   90 +++++++++++------------
 birk-1.3.0/birk/man/conv_unit_options.Rd |   46 +++++++-----
 birk-1.3.0/birk/man/geom_mean.Rd         |   33 ++++++--
 birk-1.3.0/birk/man/range_seq.Rd         |only
 birk-1.3.0/birk/man/se.Rd                |   27 +++++--
 18 files changed, 286 insertions(+), 122 deletions(-)

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Package BinNonNor updated to version 1.1 with previous version 1.0 dated 2014-12-16

Title: Data Generation with Binary and Continuous Non-normal Components
Description: Generation of multiple binary and continuous non-normal variables simultaneously given the marginal characteristics and association structure based on the methodology proposed by Demirtas et al. (2012).
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan

Diff between BinNonNor versions 1.0 dated 2014-12-16 and 1.1 dated 2015-02-01

 DESCRIPTION                         |    8 +--
 MD5                                 |   38 +++++++-------
 R/Int.Corr.NN.R                     |   10 +--
 R/Tetra.Corr.BB.R                   |   10 +--
 R/correlation.bound.check.R         |    3 -
 R/fleishman.coef.R                  |    3 -
 R/gen.Bin.NonNor.R                  |   14 ++---
 R/overall.corr.mat.R                |    1 
 man/BinNonNor-package.Rd            |    4 -
 man/Biserial.Corr.BN.Rd             |    9 +++
 man/Int.Corr.NN.Rd                  |    2 
 man/Tetra.Corr.BB.Rd                |    2 
 man/correlation.bound.check.Rd      |   21 ++++++-
 man/correlation.limits.Rd           |   14 +++--
 man/fleishman.coef.Rd               |   13 ++--
 man/gen.Bin.NonNor.Rd               |   95 +++++++++++++++++++++---------------
 man/overall.corr.mat.Rd             |   11 +++-
 man/validation.bin.Rd               |   22 +++++---
 man/validation.corr.Rd              |   27 ++++++----
 man/validation.skewness.kurtosis.Rd |   26 ++++++---
 20 files changed, 207 insertions(+), 126 deletions(-)

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Package BayesFactor updated to version 0.9.10 with previous version 0.9.9 dated 2014-10-22

Title: Computation of Bayes Factors for Common Designs
Description: A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Author: Richard D. Morey [aut, cre], Jeffrey N. Rouder [aut], Tahira Jamil [ctb]
Maintainer: Richard D. Morey

Diff between BayesFactor versions 0.9.9 dated 2014-10-22 and 0.9.10 dated 2015-02-01

 BayesFactor-0.9.10/BayesFactor/DESCRIPTION                       |   12 
 BayesFactor-0.9.10/BayesFactor/MD5                               |  127 +++++-----
 BayesFactor-0.9.10/BayesFactor/NAMESPACE                         |    3 
 BayesFactor-0.9.10/BayesFactor/NEWS                              |    9 
 BayesFactor-0.9.10/BayesFactor/R/BayesFactorPCL-package.R        |    4 
 BayesFactor-0.9.10/BayesFactor/R/RcppExports.R                   |   16 +
 BayesFactor-0.9.10/BayesFactor/R/anovaBF.R                       |    2 
 BayesFactor-0.9.10/BayesFactor/R/common.R                        |   24 -
 BayesFactor-0.9.10/BayesFactor/R/contingency-utility.R           |    2 
 BayesFactor-0.9.10/BayesFactor/R/generalTest-utility.R           |   12 
 BayesFactor-0.9.10/BayesFactor/R/generalTestBF.R                 |    2 
 BayesFactor-0.9.10/BayesFactor/R/logMean.R                       |   16 -
 BayesFactor-0.9.10/BayesFactor/R/meta-ttest-utility.R            |   12 
 BayesFactor-0.9.10/BayesFactor/R/meta.ttestBF.R                  |    2 
 BayesFactor-0.9.10/BayesFactor/R/methods-BFBayesFactor.R         |    2 
 BayesFactor-0.9.10/BayesFactor/R/methods-BFlinearModel-compare.R |   75 +++--
 BayesFactor-0.9.10/BayesFactor/R/nWayAOV-utility.R               |    8 
 BayesFactor-0.9.10/BayesFactor/R/nWayAOV.R                       |    2 
 BayesFactor-0.9.10/BayesFactor/R/oneWayAOV_Fstat.R               |   18 -
 BayesFactor-0.9.10/BayesFactor/R/proportion-utility.R            |    6 
 BayesFactor-0.9.10/BayesFactor/R/ttestBF.R                       |    2 
 BayesFactor-0.9.10/BayesFactor/R/ttest_tstat.R                   |    7 
 BayesFactor-0.9.10/BayesFactor/build/vignette.rds                |binary
 BayesFactor-0.9.10/BayesFactor/inst/doc/compare_lme4.html        |   76 ++---
 BayesFactor-0.9.10/BayesFactor/inst/doc/manual.html              |   88 +++---
 BayesFactor-0.9.10/BayesFactor/inst/doc/priors.html              |   42 +--
 BayesFactor-0.9.10/BayesFactor/man/BFBayesFactor-class.Rd        |    3 
 BayesFactor-0.9.10/BayesFactor/man/BFBayesFactorList-class.Rd    |    3 
 BayesFactor-0.9.10/BayesFactor/man/BFInfo.Rd                     |    3 
 BayesFactor-0.9.10/BayesFactor/man/BFManual.Rd                   |    3 
 BayesFactor-0.9.10/BayesFactor/man/BayesFactor-package.Rd        |    7 
 BayesFactor-0.9.10/BayesFactor/man/anovaBF.Rd                    |    3 
 BayesFactor-0.9.10/BayesFactor/man/as.BFBayesFactor.Rd           |    3 
 BayesFactor-0.9.10/BayesFactor/man/compare-methods.Rd            |    3 
 BayesFactor-0.9.10/BayesFactor/man/contingencyTableBF.Rd         |    3 
 BayesFactor-0.9.10/BayesFactor/man/enumerateGeneralModels.Rd     |    3 
 BayesFactor-0.9.10/BayesFactor/man/extractBF-methods.Rd          |    3 
 BayesFactor-0.9.10/BayesFactor/man/generalTestBF.Rd              |    3 
 BayesFactor-0.9.10/BayesFactor/man/grapes-same-grapes.Rd         |    3 
 BayesFactor-0.9.10/BayesFactor/man/grapes-termin-grapes.Rd       |    3 
 BayesFactor-0.9.10/BayesFactor/man/linearReg.R2stat.Rd           |    3 
 BayesFactor-0.9.10/BayesFactor/man/lmBF.Rd                       |    3 
 BayesFactor-0.9.10/BayesFactor/man/logMeanExpLogs.Rd             |   12 
 BayesFactor-0.9.10/BayesFactor/man/meta.ttestBF.Rd               |    5 
 BayesFactor-0.9.10/BayesFactor/man/model-classes.Rd              |    3 
 BayesFactor-0.9.10/BayesFactor/man/model.matrix-methods.Rd       |    3 
 BayesFactor-0.9.10/BayesFactor/man/nWayAOV.Rd                    |    3 
 BayesFactor-0.9.10/BayesFactor/man/oneWayAOV.Fstat.Rd            |    3 
 BayesFactor-0.9.10/BayesFactor/man/options-BayesFactor.Rd        |    3 
 BayesFactor-0.9.10/BayesFactor/man/plot.BFBayesFactor.Rd         |    3 
 BayesFactor-0.9.10/BayesFactor/man/plot.BFBayesFactorTop.Rd      |    3 
 BayesFactor-0.9.10/BayesFactor/man/posterior-methods.Rd          |    3 
 BayesFactor-0.9.10/BayesFactor/man/proportionBF.Rd               |    3 
 BayesFactor-0.9.10/BayesFactor/man/puzzles.Rd                    |    3 
 BayesFactor-0.9.10/BayesFactor/man/raceDolls.Rd                  |    3 
 BayesFactor-0.9.10/BayesFactor/man/recompute-methods.Rd          |    3 
 BayesFactor-0.9.10/BayesFactor/man/regressionBF.Rd               |    3 
 BayesFactor-0.9.10/BayesFactor/man/ttest.tstat.Rd                |    5 
 BayesFactor-0.9.10/BayesFactor/man/ttestBF.Rd                    |    5 
 BayesFactor-0.9.10/BayesFactor/src/BFPCL.h                       |   18 -
 BayesFactor-0.9.10/BayesFactor/src/RcppExports.cpp               |   62 ++++
 BayesFactor-0.9.10/BayesFactor/src/bfcommon.h                    |   11 
 BayesFactor-0.9.10/BayesFactor/src/logRepresentedReal.cpp        |only
 BayesFactor-0.9.10/BayesFactor/src/logRepresentedReal.h          |only
 BayesFactor-0.9.10/BayesFactor/src/logSummaryStats.cpp           |only
 BayesFactor-0.9.10/BayesFactor/src/logUtility.cpp                |only
 BayesFactor-0.9.9/BayesFactor/src/logMean.c                      |only
 67 files changed, 446 insertions(+), 332 deletions(-)

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Package TSjson (with last version 2014.4-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-09 2014.4-1
2013-09-29 2013.9-1

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