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Title: Compute the Personalized Activity Index Based on a Negative
Binomial Model
Diff between lmeNB versions 1.2 dated 2014-01-24 and 1.3 dated 2015-02-02
Description: The functions in this package implement the safety monitoring procedures proposed in the paper titled "Detection of unusual increases in MRI lesion counts in individual multiple sclerosis patients" by Zhao, Y., Li, D.K.B., Petkau, A.J., Riddehough, A., Traboulsee, A., published in Journal of the American Statistical Association in 2013. The procedure first models longitudinally collected count variables with a negative binomial mixed-effect regression model. To account for the correlation among repeated measures from the same patient, the model has subject-specific random intercept, which can be modelled with a gamma or log-normal distributions. One can also choose the semi-parametric option which does not assume any distribution for the random effect. These mixed-effect models could be useful beyond the application of the safety monitoring. The maximum likelihood methods are used to estimate the unknown fixed effect parameters of the model. Based on the fitted model, the personalized activity index is computed for each patient. Lastly, this package is companion to R package lmeNBBayes, which contains the functions to compute the Personalized Activity Index in Bayesian framework.
Author: Yinshan Zhao and Yumi Kondo (with contributions from Steven G. Johnson, Rudolf Schuerer and Brian Gough on the integration subroutines)
Maintainer: Yumi Kondo
lmeNB-1.2/lmeNB/man/mle_a3_fun.Rd |only
lmeNB-1.2/lmeNB/man/mle_ar1_fun.Rd |only
lmeNB-1.2/lmeNB/man/mle_ar1_non3.Rd |only
lmeNB-1.2/lmeNB/man/mle_fun.Rd |only
lmeNB-1.3/lmeNB/DESCRIPTION | 29
lmeNB-1.3/lmeNB/MD5 | 36 -
lmeNB-1.3/lmeNB/NAMESPACE | 13
lmeNB-1.3/lmeNB/R/AR1models.R | 1016 ++++------------------------
lmeNB-1.3/lmeNB/R/CPI.R | 794 ++++++++--------------
lmeNB-1.3/lmeNB/R/INDmodels.R | 1269 +++++++++++++++++++++++-------------
lmeNB-1.3/lmeNB/R/Simulation.R | 20
lmeNB-1.3/lmeNB/R/oldCode.R |only
lmeNB-1.3/lmeNB/man/CP_se.Rd | 101 +-
lmeNB-1.3/lmeNB/man/RElmeNB.Rd |only
lmeNB-1.3/lmeNB/man/fitParaAR1.Rd |only
lmeNB-1.3/lmeNB/man/fitParaIND.Rd |only
lmeNB-1.3/lmeNB/man/fitSemiAR1.Rd |only
lmeNB-1.3/lmeNB/man/fitSemiIND.Rd |only
lmeNB-1.3/lmeNB/man/index_batch.Rd | 163 +++-
lmeNB-1.3/lmeNB/man/jCP_ar1.Rd | 111 +--
lmeNB-1.3/lmeNB/man/lmeNB.Rd | 474 +++++++++----
lmeNB-1.3/lmeNB/man/rNBME_R.Rd | 107 ---
lmeNB-1.3/lmeNB/src |only
23 files changed, 1882 insertions(+), 2251 deletions(-)
Title: Excursion Sets and Contour Credibility Regions for Random Fields
Diff between excursions versions 1.1-20140610 dated 2014-06-11 and 2.0.6 dated 2015-02-02
Description: Functions that compute probabilistic excursion sets, contour credibility regions, contour avoiding regions, and simultaneous confidence bands for latent gaussian random processes and fields. The package also contains functions that calculate these quantities for models estimated with the INLA package.
Author: David Bolin
Maintainer: David Bolin
excursions-1.1-20140610/excursions/R/excursions.int.R |only
excursions-1.1-20140610/excursions/R/excursions.simconf.R |only
excursions-1.1-20140610/excursions/inst/doc/copying/AMD.txt |only
excursions-1.1-20140610/excursions/inst/doc/copying/CHOLMOD.txt |only
excursions-1.1-20140610/excursions/inst/doc/copying/COLAMD.txt |only
excursions-1.1-20140610/excursions/man/excursions.int.Rd |only
excursions-1.1-20140610/excursions/man/excursions.simconf.Rd |only
excursions-1.1-20140610/excursions/src/AMD |only
excursions-1.1-20140610/excursions/src/CHOLMOD |only
excursions-1.1-20140610/excursions/src/COLAMD |only
excursions-1.1-20140610/excursions/src/Makefile |only
excursions-1.1-20140610/excursions/src/Makefile.win |only
excursions-1.1-20140610/excursions/src/excursions.cpp |only
excursions-1.1-20140610/excursions/src/gaussint.cpp |only
excursions-1.1-20140610/excursions/src/install.libs.R |only
excursions-1.1-20140610/excursions/src/utils.cpp |only
excursions-1.1-20140610/excursions/src/utils.h |only
excursions-1.1-20140610/excursions/src/xerbla.c |only
excursions-2.0.6/excursions/DESCRIPTION | 30
excursions-2.0.6/excursions/MD5 | 194 ----
excursions-2.0.6/excursions/NAMESPACE | 22
excursions-2.0.6/excursions/R/contourmap.R |only
excursions-2.0.6/excursions/R/contourmap.inla.R |only
excursions-2.0.6/excursions/R/contourutil.R |only
excursions-2.0.6/excursions/R/excursions.R | 406 +++-----
excursions-2.0.6/excursions/R/excursions.inla.R | 446 +++++----
excursions-2.0.6/excursions/R/gaussint.R |only
excursions-2.0.6/excursions/R/geometry.R |only
excursions-2.0.6/excursions/R/inlautils.R |only
excursions-2.0.6/excursions/R/simconf.R |only
excursions-2.0.6/excursions/R/simconf.inla.R |only
excursions-2.0.6/excursions/R/simconf.mixture.R |only
excursions-2.0.6/excursions/R/utils.R | 374 ++++++-
excursions-2.0.6/excursions/README.md |only
excursions-2.0.6/excursions/inst/CITATION |only
excursions-2.0.6/excursions/inst/COPYRIGHTS | 18
excursions-2.0.6/excursions/man/continuous.Rd |only
excursions-2.0.6/excursions/man/contourmap.Rd |only
excursions-2.0.6/excursions/man/contourmap.colors.Rd |only
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excursions-2.0.6/excursions/man/excursions.Rd | 72 -
excursions-2.0.6/excursions/man/excursions.inla.Rd | 105 +-
excursions-2.0.6/excursions/man/excursions.variances.Rd |only
excursions-2.0.6/excursions/man/gaussint.Rd |only
excursions-2.0.6/excursions/man/simconf.Rd |only
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excursions-2.0.6/excursions/man/simconf.mixture.Rd |only
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excursions-2.0.6/excursions/man/tricontourmap.Rd |only
excursions-2.0.6/excursions/src/Makevars |only
excursions-2.0.6/excursions/src/RngStream.c | 120 +-
excursions-2.0.6/excursions/src/RngStream.h | 6
excursions-2.0.6/excursions/src/integration.cpp | 481 +++++-----
excursions-2.0.6/excursions/src/qinv.cpp |only
excursions-2.0.6/excursions/src/reordering.cpp |only
excursions-2.0.6/excursions/tests |only
56 files changed, 1264 insertions(+), 1010 deletions(-)
Title: Sample Size Estimation Functions for Cluster Randomized Trials
Diff between CRTSize versions 0.3 dated 2013-12-18 and 0.4 dated 2015-02-02
Description: This package contains basic tools for the purpose of sample size estimation in cluster (group) randomized trials. The package contains traditional power-based methods, empirical smoothing (Rotondi and Donner, 2009), and updated meta-analysis techniques (Rotondi and Donner, 2012).
Author: Michael A Rotondi
Maintainer: Michael A Rotondi
DESCRIPTION | 8
MD5 | 12
NAMESPACE | 22 +
R/n4incidence.R | 6
R/n4means.R | 4
R/n4meansMeta.R | 754 ++++++++++++++++++++++++++++----------------------------
R/n4props.R | 4
7 files changed, 415 insertions(+), 395 deletions(-)
Title: Simulation of Event Histories for Multi-state Models
Diff between simMSM versions 1.1.2 dated 2015-01-12 and 1.1.4 dated 2015-02-02
Description: Simulation of event histories with possibly non-linear baseline hazard rate functions, non-linear (time-varying) covariate effect functions, and dependencies on the past of the history. Random generation of event histories is performed using inversion sampling on the cumulative all-cause hazard rate functions.
Author: Holger Reulen
Maintainer: Holger Reulen
simMSM-1.1.2/simMSM/man/allcausehr.Rd |only
simMSM-1.1.2/simMSM/man/cumallcausehr.Rd |only
simMSM-1.1.2/simMSM/man/hr.Rd |only
simMSM-1.1.2/simMSM/man/meancentering.Rd |only
simMSM-1.1.2/simMSM/man/simCR.Rd |only
simMSM-1.1.2/simMSM/man/simEBMT.Rd |only
simMSM-1.1.2/simMSM/man/simMSM-package.Rd |only
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simMSM-1.1.4/simMSM/DESCRIPTION | 11 +-
simMSM-1.1.4/simMSM/MD5 | 51 ++++-----
simMSM-1.1.4/simMSM/NAMESPACE | 10 +
simMSM-1.1.4/simMSM/R/TraFromMpl.R |only
simMSM-1.1.4/simMSM/R/allcausehr.R | 5
simMSM-1.1.4/simMSM/R/cumallcausehr.R | 4
simMSM-1.1.4/simMSM/R/mplskeleton.R |only
simMSM-1.1.4/simMSM/R/plotbe.R |only
simMSM-1.1.4/simMSM/R/plotcph.R |only
simMSM-1.1.4/simMSM/R/plotnae.R |only
simMSM-1.1.4/simMSM/R/pmeskeleton.R |only
simMSM-1.1.4/simMSM/R/simCR.R | 4
simMSM-1.1.4/simMSM/R/simEBMT.R | 3
simMSM-1.1.4/simMSM/R/simeventhistories.R | 123 ++++++++++++++++++++---
simMSM-1.1.4/simMSM/R/simexit.R | 21 +--
simMSM-1.1.4/simMSM/R/simexitinner.R | 19 ---
simMSM-1.1.4/simMSM/R/simsinglehistory.R | 58 +++++++++-
simMSM-1.1.4/simMSM/R/simto.R | 10 -
simMSM-1.1.4/simMSM/R/tolongformat.R |only
simMSM-1.1.4/simMSM/R/unirootf.R | 4
simMSM-1.1.4/simMSM/man/mplskeleton.Rd |only
simMSM-1.1.4/simMSM/man/plotbe.Rd |only
simMSM-1.1.4/simMSM/man/plotcph.Rd |only
simMSM-1.1.4/simMSM/man/plotnae.Rd |only
simMSM-1.1.4/simMSM/man/pmeskeleton.Rd |only
simMSM-1.1.4/simMSM/man/simeventhistories.Rd | 144 ++++++++++++++++++---------
simMSM-1.1.4/simMSM/man/tolongformat.Rd |only
39 files changed, 323 insertions(+), 144 deletions(-)
Title: Data Structures and Algorithms for Relations
Diff between relations versions 0.6-3 dated 2014-04-02 and 0.6-4 dated 2015-02-02
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre],
Christian Buchta [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 6 ++--
MD5 | 28 ++++++++++-----------
build/vignette.rds |binary
data/Cetacea.rda |binary
data/Felines.rda |binary
data/SVM_Benchmarking_Classification.rda |binary
data/SVM_Benchmarking_Classification_Consensus.rda |binary
data/SVM_Benchmarking_Regression.rda |binary
data/SVM_Benchmarking_Regression_Consensus.rda |binary
inst/doc/relations.R | 1
inst/doc/relations.Rnw | 2 -
inst/doc/relations.pdf |binary
man/Felines.Rd | 2 -
man/algebra.Rd | 2 -
vignettes/relations.Rnw | 2 -
15 files changed, 22 insertions(+), 21 deletions(-)
Title: Cluster ensembles
Diff between clue versions 0.3-48 dated 2014-04-02 and 0.3-49 dated 2015-02-02
Description: CLUster Ensembles
Author: Kurt Hornik [aut, cre],
Walter Böhm [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 6 +++---
MD5 | 32 ++++++++++++++++----------------
build/vignette.rds |binary
data/CKME.rda |binary
data/Cassini.rda |binary
data/GVME.rda |binary
data/GVME_Consensus.rda |binary
data/Kinship82.rda |binary
data/Kinship82_Consensus.rda |binary
data/Phonemes.rda |binary
inst/doc/clue.R | 1 +
inst/doc/clue.Rnw | 4 ++--
inst/doc/clue.pdf |binary
man/cl_bag.Rd | 2 +-
man/cl_dissimilarity.Rd | 7 +++----
vignettes/clue.Rnw | 4 ++--
vignettes/cluster.bib | 14 +++++++++++++-
17 files changed, 41 insertions(+), 29 deletions(-)
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Diff between twang versions 1.4-0 dated 2014-03-18 and 1.4-9.3 dated 2015-02-02
Description: This package offers functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights. This package was originally developed by Drs.
Ridgeway, McCaffrey, and Morral. Burgette, Griffin and
McCaffrey updated the package during 2011-2015.
Author: Greg Ridgeway, Dan McCaffrey, Andrew Morral, Beth Ann, Lane Burgette
Maintainer: Lane Burgette
twang-1.4-0/twang/R/ksStatTrueMN.R |only
twang-1.4-0/twang/R/plot.mnps.old.R |only
twang-1.4-9.3/twang/DESCRIPTION | 16
twang-1.4-9.3/twang/MD5 | 73
twang-1.4-9.3/twang/NAMESPACE | 2
twang-1.4-9.3/twang/R/bal.stat.R | 6
twang-1.4-9.3/twang/R/bal.table.R | 102
twang-1.4-9.3/twang/R/boxplot.mnps.R | 41
twang-1.4-9.3/twang/R/desc.wts.R | 4
twang-1.4-9.3/twang/R/diag.plot.color.R | 2
twang-1.4-9.3/twang/R/displayPlots.R |only
twang-1.4-9.3/twang/R/makeWeightsMNPS.R | 2
twang-1.4-9.3/twang/R/mnps2.R | 19
twang-1.4-9.3/twang/R/pairwiseComparison.R | 6
twang-1.4-9.3/twang/R/plot.mnps.2.R |only
twang-1.4-9.3/twang/R/plot.mnps.R | 384 ++-
twang-1.4-9.3/twang/R/plotTruePairs.R |only
twang-1.4-9.3/twang/R/print.summary.mnps.R | 28
twang-1.4-9.3/twang/R/ps.summary.new2.R | 6
twang-1.4-9.3/twang/R/summary.mnps.R | 54
twang-1.4-9.3/twang/R/summary.ps.R | 31
twang-1.4-9.3/twang/build/vignette.rds |binary
twang-1.4-9.3/twang/data/AOD.RData |binary
twang-1.4-9.3/twang/data/egsingle.RData |binary
twang-1.4-9.3/twang/data/lalonde.RData |binary
twang-1.4-9.3/twang/data/lindner.RData |binary
twang-1.4-9.3/twang/data/raceprofiling.RData |binary
twang-1.4-9.3/twang/inst/doc/mnps.R | 157 -
twang-1.4-9.3/twang/inst/doc/mnps.pdf |binary
twang-1.4-9.3/twang/inst/doc/mnps.rnw | 434 ++-
twang-1.4-9.3/twang/inst/doc/twang.R | 189 -
twang-1.4-9.3/twang/inst/doc/twang.pdf |binary
twang-1.4-9.3/twang/inst/doc/twang.rnw | 3418 +++++++++++++--------------
twang-1.4-9.3/twang/man/bal.stat.Rd | 5
twang-1.4-9.3/twang/man/bal.table.Rd | 14
twang-1.4-9.3/twang/man/boxplot.mnps.Rd | 7
twang-1.4-9.3/twang/man/desc.wts.Rd | 7
twang-1.4-9.3/twang/man/plot.mnps.Rd | 25
twang-1.4-9.3/twang/vignettes/mnps.rnw | 434 ++-
twang-1.4-9.3/twang/vignettes/twang.rnw | 3418 +++++++++++++--------------
40 files changed, 4874 insertions(+), 4010 deletions(-)
Title: Data Visualization for Statistics in Social Science
Diff between sjPlot versions 1.6.5 dated 2014-12-15 and 1.6.8 dated 2015-02-02
Description: Collection of several plotting and table output functions for
visualizing data, and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Lüdecke
sjPlot-1.6.5/sjPlot/man/sjp.glm.ma.Rd |only
sjPlot-1.6.5/sjPlot/man/sjp.lm.ma.Rd |only
sjPlot-1.6.5/sjPlot/man/sjp.lm1.Rd |only
sjPlot-1.6.5/sjPlot/man/sjp.reglin.Rd |only
sjPlot-1.6.5/sjPlot/man/sjp.vif.Rd |only
sjPlot-1.6.8/sjPlot/DESCRIPTION | 10
sjPlot-1.6.8/sjPlot/MD5 | 189 -
sjPlot-1.6.8/sjPlot/NAMESPACE | 189 -
sjPlot-1.6.8/sjPlot/NEWS | 24
sjPlot-1.6.8/sjPlot/R/helpfunctions.R | 957 ++++----
sjPlot-1.6.8/sjPlot/R/sjImportSPSS.R | 802 +++----
sjPlot-1.6.8/sjPlot/R/sjPlotAncovaLSMeans.R | 714 +++---
sjPlot-1.6.8/sjPlot/R/sjPlotCorr.R | 697 +++---
sjPlot-1.6.8/sjPlot/R/sjPlotGLME.R | 292 ++
sjPlot-1.6.8/sjPlot/R/sjPlotGroupFrequencies.R | 2487 +++++++++++------------
sjPlot-1.6.8/sjPlot/R/sjPlotInteractions.R | 6
sjPlot-1.6.8/sjPlot/R/sjPlotLikert.R | 4
sjPlot-1.6.8/sjPlot/R/sjPlotLinreg.R | 535 ++--
sjPlot-1.6.8/sjPlot/R/sjPlotLinregMultiple.R | 831 +++----
sjPlot-1.6.8/sjPlot/R/sjPlotOdds.R | 1570 +++++++-------
sjPlot-1.6.8/sjPlot/R/sjPlotOddsMultiple.R | 1
sjPlot-1.6.8/sjPlot/R/sjPlotScatter.R | 2
sjPlot-1.6.8/sjPlot/R/sjPlotSetTheme.R | 7
sjPlot-1.6.8/sjPlot/R/sjRecode.R | 21
sjPlot-1.6.8/sjPlot/R/sjStatistics.R | 70
sjPlot-1.6.8/sjPlot/R/sjTabCorr.R | 5
sjPlot-1.6.8/sjPlot/R/sjTabFrequencies.R | 1287 ++++++-----
sjPlot-1.6.8/sjPlot/R/sjTabGrpmean.R | 6
sjPlot-1.6.8/sjPlot/R/sjTabLinReg.R | 75
sjPlot-1.6.8/sjPlot/R/sjTabOdds.R | 20
sjPlot-1.6.8/sjPlot/R/sjTabPropTable.R | 1642 +++++++--------
sjPlot-1.6.8/sjPlot/README.md | 39
sjPlot-1.6.8/sjPlot/man/efc.Rd | 92
sjPlot-1.6.8/sjPlot/man/sj.setGeomColors.Rd | 52
sjPlot-1.6.8/sjPlot/man/sjPlot-package.Rd | 4
sjPlot-1.6.8/sjPlot/man/sjc.cluster.Rd | 180 -
sjPlot-1.6.8/sjPlot/man/sjc.dend.Rd | 104
sjPlot-1.6.8/sjPlot/man/sjc.elbow.Rd | 76
sjPlot-1.6.8/sjPlot/man/sjc.grpdisc.Rd | 110 -
sjPlot-1.6.8/sjPlot/man/sjc.kgap.Rd | 134 -
sjPlot-1.6.8/sjPlot/man/sjc.qclus.Rd | 386 +--
sjPlot-1.6.8/sjPlot/man/sji.SPSS.Rd | 102
sjPlot-1.6.8/sjPlot/man/sji.convertToLabel.Rd | 80
sjPlot-1.6.8/sjPlot/man/sji.convertToValue.Rd | 78
sjPlot-1.6.8/sjPlot/man/sji.getValueLabels.Rd | 94
sjPlot-1.6.8/sjPlot/man/sji.getVariableLabels.Rd | 92
sjPlot-1.6.8/sjPlot/man/sji.setValueLabels.Rd | 96
sjPlot-1.6.8/sjPlot/man/sji.setVariableLabels.Rd | 124 -
sjPlot-1.6.8/sjPlot/man/sji.viewSPSS.Rd | 248 +-
sjPlot-1.6.8/sjPlot/man/sjp.chi2.Rd | 122 -
sjPlot-1.6.8/sjPlot/man/sjp.corr.Rd | 248 +-
sjPlot-1.6.8/sjPlot/man/sjp.emm.int.Rd | 270 +-
sjPlot-1.6.8/sjPlot/man/sjp.glm.Rd | 384 +--
sjPlot-1.6.8/sjPlot/man/sjp.glmer.Rd | 410 +--
sjPlot-1.6.8/sjPlot/man/sjp.glmm.Rd | 325 +--
sjPlot-1.6.8/sjPlot/man/sjp.int.Rd | 450 ++--
sjPlot-1.6.8/sjPlot/man/sjp.likert.Rd | 442 ++--
sjPlot-1.6.8/sjPlot/man/sjp.lm.Rd | 370 ++-
sjPlot-1.6.8/sjPlot/man/sjp.lmer.Rd | 369 +--
sjPlot-1.6.8/sjPlot/man/sjp.lmm.Rd | 311 +-
sjPlot-1.6.8/sjPlot/man/sjp.pca.Rd | 288 +-
sjPlot-1.6.8/sjPlot/man/sjp.scatter.Rd | 2
sjPlot-1.6.8/sjPlot/man/sjp.stackfrq.Rd | 360 +--
sjPlot-1.6.8/sjPlot/man/sjs.aov1.levene.Rd | 56
sjPlot-1.6.8/sjPlot/man/sjs.chi2.gof.Rd | 78
sjPlot-1.6.8/sjPlot/man/sjs.cramer.Rd | 54
sjPlot-1.6.8/sjPlot/man/sjs.cronbach.Rd | 60
sjPlot-1.6.8/sjPlot/man/sjs.etasq.Rd | 100
sjPlot-1.6.8/sjPlot/man/sjs.mic.Rd | 98
sjPlot-1.6.8/sjPlot/man/sjs.mwu.Rd | 114 -
sjPlot-1.6.8/sjPlot/man/sjs.phi.Rd | 54
sjPlot-1.6.8/sjPlot/man/sjs.reliability.Rd | 178 -
sjPlot-1.6.8/sjPlot/man/sjs.se.Rd | 42
sjPlot-1.6.8/sjPlot/man/sjs.stdb.Rd | 88
sjPlot-1.6.8/sjPlot/man/sjs.table.values.Rd | 80
sjPlot-1.6.8/sjPlot/man/sjt.corr.Rd | 358 +--
sjPlot-1.6.8/sjPlot/man/sjt.df.Rd | 290 +-
sjPlot-1.6.8/sjPlot/man/sjt.frq.Rd | 440 ++--
sjPlot-1.6.8/sjPlot/man/sjt.glm.Rd | 508 ++--
sjPlot-1.6.8/sjPlot/man/sjt.grpmean.Rd | 155 -
sjPlot-1.6.8/sjPlot/man/sjt.itemanalysis.Rd | 392 +--
sjPlot-1.6.8/sjPlot/man/sjt.lm.Rd | 552 ++---
sjPlot-1.6.8/sjPlot/man/sjt.pca.Rd | 354 +--
sjPlot-1.6.8/sjPlot/man/sjt.stackfrq.Rd | 386 +--
sjPlot-1.6.8/sjPlot/man/sjt.xtab.Rd | 446 ++--
sjPlot-1.6.8/sjPlot/man/sju.adjustPlotRange.y.Rd | 90
sjPlot-1.6.8/sjPlot/man/sju.dicho.Rd | 78
sjPlot-1.6.8/sjPlot/man/sju.groupString.Rd | 98
sjPlot-1.6.8/sjPlot/man/sju.groupVar.Rd | 132 -
sjPlot-1.6.8/sjPlot/man/sju.groupVarLabels.Rd | 150 -
sjPlot-1.6.8/sjPlot/man/sju.mean.n.Rd | 80
sjPlot-1.6.8/sjPlot/man/sju.recode.Rd | 48
sjPlot-1.6.8/sjPlot/man/sju.recodeTo.Rd | 96
sjPlot-1.6.8/sjPlot/man/sju.setNA.Rd | 62
sjPlot-1.6.8/sjPlot/man/sju.strpos.Rd | 138 -
sjPlot-1.6.8/sjPlot/man/sju.weight.Rd | 78
sjPlot-1.6.8/sjPlot/man/sju.weight2.Rd | 90
sjPlot-1.6.8/sjPlot/man/sju.wordwrap.Rd | 56
98 files changed, 12740 insertions(+), 12224 deletions(-)
Title: Improved Access for Blind Users
Diff between BrailleR versions 0.11 dated 2014-09-27 and 0.16.1 dated 2015-02-02
Description: Blind users do not have access to the graphical output from R without printing the content of graph windows to an embosser of some kind. This is not as immediate as is required for efficient access to statistical output. The functions here are created so that blind people can make even better use of R.
Author: A. Jonathan R. Godfrey [aut, cre], Greg Snow [ctb], Paul Murrell [ctb], Yihui Xie [ctb]
Maintainer: A. Jonathan R. Godfrey
DESCRIPTION | 12 -
MD5 | 58 +++++----
NAMESPACE | 9 +
R/DataViewer.R |only
R/MaskedFunctions.R | 9 -
R/OneFactor.R |only
R/Options.R |only
R/UniDesc.R | 125 ++++++++++++-------
R/VIMethod.R | 146 ++++++++++++++++++-----
R/WhereXY.R | 28 ++--
R/zzz.R |only
build/vignette.rds |binary
inst/CITATION | 4
inst/Sound |only
inst/doc/BrailleRManual.html | 44 ++++--
inst/doc/Ex1histograms.html | 110 ++++++++---------
inst/doc/Ex2BasicNumerical.html | 59 +++++----
inst/doc/Ex3UnivariateDescription.R | 4
inst/doc/Ex3UnivariateDescription.html | 24 ++-
inst/doc/Ex3UnivariateDescription.rmd | 10 -
inst/doc/Ex4SingleResponseOneGroupingFactor.R |only
inst/doc/Ex4SingleResponseOneGroupingFactor.html |only
inst/doc/Ex4SingleResponseOneGroupingFactor.rmd |only
man/BrailleR-package.Rd | 10 -
man/DataViewer.Rd |only
man/OneFactor.Rd |only
man/Options.Rd |only
man/R2txtJG.Rd | 12 -
man/UniDesc.Rd | 22 +--
man/VI.Rd | 23 ++-
man/WhereXY.Rd | 12 +
man/boxplot.Rd | 17 +-
man/hist.Rd | 15 +-
man/unfinished.Rd | 3
vignettes/Ex3UnivariateDescription.rmd | 10 -
vignettes/Ex4SingleResponseOneGroupingFactor.rmd |only
36 files changed, 480 insertions(+), 286 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-22 1.1
2014-08-09 1.0
Title: n-gram Text Regression, aka Concise Comparative Summarization
Diff between textreg versions 0.1 dated 2014-12-04 and 0.1.1 dated 2015-02-02
Description: Function for sparse regression on raw text, regressing a labeling
vector onto a feature space consisting of all possible phrases.
Author: Luke Miratrix
Maintainer: Luke Miratrix
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/textreg.cpp | 15 +++++++++------
3 files changed, 14 insertions(+), 11 deletions(-)
Title: STRUctural Modeling of Latent Variables for General Pedigree
Diff between strum versions 0.5 dated 2014-12-10 and 0.5.1 dated 2015-02-02
Description: This package implements a broad class of latent variable and structural equation models for general pedigree data.
Author: Nathan Morris [aut, cre],
Yeunjoo Song [aut],
Stephen Cahn [ctb]
Maintainer: Nathan Morris
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/computeLLDeriv.cpp | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
Title: Royston's H Test: Multivariate Normality Test
Diff between royston versions 1.1 dated 2015-01-16 and 1.2 dated 2015-02-02
Description: Performs a multivariate normality test based on Royston's H test
Author: Selcuk Korkmaz
Maintainer: Selcuk Korkmaz
royston-1.1/royston/data |only
royston-1.1/royston/man/a.Rd |only
royston-1.2/royston/DESCRIPTION | 11 ++++++-----
royston-1.2/royston/MD5 | 10 +++++-----
royston-1.2/royston/R/royston.test.R | 1 -
royston-1.2/royston/R/welcome.R |only
royston-1.2/royston/inst |only
royston-1.2/royston/man/royston-package.Rd | 2 --
8 files changed, 11 insertions(+), 13 deletions(-)
Title: A Google Analytics API client for R
Diff between RGA versions 0.1.4 dated 2014-12-19 and 0.2 dated 2015-02-02
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov
RGA-0.1.4/RGA/R/data.R |only
RGA-0.1.4/RGA/R/get-mgmt.R |only
RGA-0.1.4/RGA/R/get-pages.R |only
RGA-0.1.4/RGA/R/list-mgmt.R |only
RGA-0.1.4/RGA/R/onload.R |only
RGA-0.1.4/RGA/R/sysdata.rda |only
RGA-0.1.4/RGA/man/dims_mets.Rd |only
RGA-0.1.4/RGA/man/get_firstdate.Rd |only
RGA-0.2/RGA/DESCRIPTION | 24 +-
RGA-0.2/RGA/MD5 | 115 ++++++++----
RGA-0.2/RGA/NAMESPACE | 29 ++-
RGA-0.2/RGA/R/accounts.R |only
RGA-0.2/RGA/R/auth.R | 30 +--
RGA-0.2/RGA/R/convert.R | 110 ++++++------
RGA-0.2/RGA/R/custom.R |only
RGA-0.2/RGA/R/experiments.R |only
RGA-0.2/RGA/R/filters.R |only
RGA-0.2/RGA/R/first-date.R |only
RGA-0.2/RGA/R/ga.R |only
RGA-0.2/RGA/R/get-data.R | 23 ++
RGA-0.2/RGA/R/goals.R |only
RGA-0.2/RGA/R/mcf.R |only
RGA-0.2/RGA/R/metadata.R |only
RGA-0.2/RGA/R/mgmt.R |only
RGA-0.2/RGA/R/package.R | 33 ++-
RGA-0.2/RGA/R/profiles.R |only
RGA-0.2/RGA/R/query.R | 31 +--
RGA-0.2/RGA/R/report.R | 231 ++-----------------------
RGA-0.2/RGA/R/request.R | 93 +++-------
RGA-0.2/RGA/R/rt.R |only
RGA-0.2/RGA/R/segments.R |only
RGA-0.2/RGA/R/shiny.R | 41 ++--
RGA-0.2/RGA/R/unsampled.R |only
RGA-0.2/RGA/R/url.R | 72 ++------
RGA-0.2/RGA/R/utils.R | 61 +++++-
RGA-0.2/RGA/R/webproperties.R |only
RGA-0.2/RGA/R/zzz.R | 4
RGA-0.2/RGA/README.md | 268 +-----------------------------
RGA-0.2/RGA/build |only
RGA-0.2/RGA/data |only
RGA-0.2/RGA/inst |only
RGA-0.2/RGA/man/RGA.Rd | 37 +++-
RGA-0.2/RGA/man/authorize.Rd | 20 +-
RGA-0.2/RGA/man/dimsmets.Rd |only
RGA-0.2/RGA/man/firstdate.Rd |only
RGA-0.2/RGA/man/ga.Rd | 40 ++--
RGA-0.2/RGA/man/get_experiment.Rd |only
RGA-0.2/RGA/man/get_filter.Rd |only
RGA-0.2/RGA/man/get_ga.Rd | 22 +-
RGA-0.2/RGA/man/get_goal.Rd | 40 ++--
RGA-0.2/RGA/man/get_mcf.Rd | 19 +-
RGA-0.2/RGA/man/get_profile.Rd | 46 ++---
RGA-0.2/RGA/man/get_rt.Rd | 18 --
RGA-0.2/RGA/man/get_unsampled_report.Rd |only
RGA-0.2/RGA/man/get_webproperty.Rd | 44 ++--
RGA-0.2/RGA/man/list_accounts.Rd | 30 +--
RGA-0.2/RGA/man/list_custom_sources.Rd |only
RGA-0.2/RGA/man/list_experiments.Rd |only
RGA-0.2/RGA/man/list_filters.Rd |only
RGA-0.2/RGA/man/list_goals.Rd | 45 +----
RGA-0.2/RGA/man/list_metadata.Rd |only
RGA-0.2/RGA/man/list_profiles.Rd | 42 +---
RGA-0.2/RGA/man/list_segments.Rd | 31 +--
RGA-0.2/RGA/man/list_unsampled_reports.Rd |only
RGA-0.2/RGA/man/list_webproperties.Rd | 39 ++--
RGA-0.2/RGA/tests |only
RGA-0.2/RGA/vignettes |only
67 files changed, 640 insertions(+), 998 deletions(-)
Title: Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Diff between tripEstimation versions 0.0-41 dated 2013-07-10 and 0.0-42 dated 2015-02-02
More information about tripEstimation at CRAN
Description: Data handling and estimation functions for animal movement
estimation from archival or satellite tags. Helper functions are included
for making image summaries binned by time interval from MCMC simulations of
point data.
Author: Michael D. Sumner [aut, cre],
Simon Wotherspoon [ctb]
Maintainer: Michael D. Sumner
DESCRIPTION | 17 ++++++++++-------
MD5 | 10 +++++-----
NEWS | 4 ++++
README.md | 5 +----
TODO | 9 +++++++--
inst/CITATION | 16 +++++++++++-----
6 files changed, 38 insertions(+), 23 deletions(-)
Permanent link
Title: Linkage Map Construction using the MSTmap Algorithm
Diff between ASMap versions 0.3-2 dated 2014-10-13 and 0.3-3 dated 2015-02-02
Description: Functions for (A)ccurate and (S)peedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred R/qtl objects. This includes extremely fast linkage map clustering and optimal marker ordering using MSTmap (see Wu et al.,2008).
Author: Julian Taylor
Maintainer: Julian Taylor
DESCRIPTION | 10 ++--
MD5 | 10 ++--
R/mstmap9.R | 106 +++++++++++++++++++++++++++++++++++++++++++----
man/ASMap-package.Rd | 2
man/mstmap.cross.Rd | 2
man/mstmap.data.frame.Rd | 4 -
6 files changed, 111 insertions(+), 23 deletions(-)
Title: The Analysis of Biological Data
Diff between abd versions 0.2-6 dated 2014-03-31 and 0.2-7 dated 2015-02-02
Description: The abd package contains data sets and sample code for The
Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009;
Roberts & Company Publishers).
Author: Kevin M. Middleton
Maintainer: Kevin M. Middleton
DESCRIPTION | 13 -
MD5 | 310 +++++++++++++++++++++----------------------
NAMESPACE | 3
R/abdData.R | 63 ++++----
R/datasets.R | 261 ++++++------------------------------
R/histochart.R | 7
R/themes.R | 2
man/AlgaeCO2.Rd | 18 +-
man/Antilles.Rd | 15 +-
man/Aspirin.Rd | 16 +-
man/BeeGenes.Rd | 16 +-
man/BeeLifespans.Rd | 10 -
man/Beetles.Rd | 14 -
man/BirdSexRatio.Rd | 10 -
man/Blackbirds.Rd | 16 +-
man/BodyFatHeatLoss.Rd | 13 -
man/BrainExpression.Rd | 17 +-
man/BrookTrout.Rd | 26 +--
man/Cavalry.Rd | 19 +-
man/Chickadees.Rd | 17 +-
man/ChimpBrains.Rd | 9 -
man/Cichlids.Rd | 19 +-
man/CichlidsGnRH.Rd | 17 +-
man/Clearcuts.Rd | 16 +-
man/CocaineDopamine.Rd | 20 +-
man/Convictions.Rd | 15 --
man/ConvictionsAndIncome.Rd | 15 +-
man/Crickets.Rd | 13 -
man/DEET.Rd | 15 --
man/DaphniaLongevity.Rd | 14 -
man/DaphniaResistance.Rd | 17 +-
man/DayOfBirth.Rd | 15 +-
man/DesertBirds.Rd | 16 +-
man/Dioecy.Rd | 11 -
man/Dolphins.Rd | 17 +-
man/DungBeetles.Rd | 18 +-
man/Earthworms.Rd | 16 +-
man/Earwigs.Rd | 19 +-
man/Eelgrass.Rd | 20 +-
man/ElVerde.Rd | 13 -
man/ElectricFish.Rd | 16 +-
man/EndangeredSpecies.Rd | 13 -
man/FingerRatio.Rd | 17 +-
man/Fireflies.Rd | 18 +-
man/FireflyFlash.Rd | 14 -
man/FlyTestes.Rd | 17 +-
man/FlycatcherPatch.Rd | 14 -
man/GeneRegulation.Rd | 14 -
man/GlidingSnakes.Rd | 16 +-
man/GodwitArrival.Rd | 15 +-
man/Grassland.Rd | 16 +-
man/GreatTitMalaria.Rd | 14 -
man/Greenspace.Rd | 15 --
man/Guppies.Rd | 18 +-
man/Hemoglobin.Rd | 18 +-
man/HippocampusLesions.Rd | 14 -
man/HornedLizards.Rd | 16 +-
man/HumanBodyTemp.Rd | 21 +-
man/HumanGeneLengths.Rd | 65 ++-------
man/Hurricanes.Rd | 18 +-
man/Iguanas.Rd | 16 +-
man/IntertidalAlgae.Rd | 14 -
man/JetLagKnees.Rd | 14 +
man/KenyaFinches.Rd | 17 +-
man/LanguageBrains.Rd | 16 +-
man/LarvalFish.Rd | 15 --
man/Lefthanded.Rd | 15 +-
man/LionCubs.Rd | 13 -
man/LionNoses.Rd | 14 -
man/LiverPreparation.Rd | 18 +-
man/LizardBite.Rd | 29 +---
man/LizardSprint.Rd | 24 +--
man/Lobsters.Rd | 16 +-
man/LodgepolePines.Rd | 21 +-
man/LupusMice.Rd | 14 -
man/Lynx.Rd | 12 -
man/MarineReserve.Rd | 15 --
man/MassExtinctions.Rd | 12 -
man/MoleRats.Rd | 20 +-
man/Mosquitoes.Rd | 17 +-
man/MouseEmpathy.Rd | 16 +-
man/NeanderthalBrains.Rd | 12 -
man/NematodeLifespan.Rd | 19 +-
man/NeotropicalTrees.Rd | 21 +-
man/Newts.Rd | 19 +-
man/NoSmokingDay.Rd | 17 +-
man/NorthSeaCod.Rd | 18 +-
man/OstrichTemp.Rd | 23 +--
man/Penguins.Rd | 16 +-
man/PlantPersistence.Rd | 14 -
man/Pollen.Rd | 14 -
man/Powerball.Rd | 12 -
man/PrimateMetabolism.Rd | 12 -
man/PrimateWBC.Rd | 11 -
man/ProgesteroneExercise.Rd | 18 +-
man/Pseudoscorpions.Rd | 20 +-
man/Pufferfish.Rd | 22 +--
man/Rattlesnakes.Rd | 16 +-
man/Rigormortis.Rd | 13 -
man/RopeTrick.Rd | 16 +-
man/SagebrushCrickets.Rd | 17 +-
man/SalmonColor.Rd | 20 +-
man/Seedlings.Rd | 6
man/Selection.Rd | 18 +-
man/SexualSelection.Rd | 21 +-
man/ShadParasites.Rd | 14 -
man/ShrinkingSeals.Rd | 16 +-
man/ShuttleDisaster.Rd | 22 +--
man/Silversword.Rd | 14 -
man/SleepAndPerformance.Rd | 15 +-
man/SockeyeFemales.Rd | 17 +-
man/Sparrows.Rd | 17 +-
man/SpiderColonies.Rd | 15 --
man/SpiderSpeed.Rd | 20 +-
man/Stalkies1.Rd | 9 -
man/Stalkies2.Rd | 16 +-
man/SticklebackPlates.Rd | 32 ++--
man/SticklebackPreference.Rd | 19 +-
man/Sumo.Rd | 11 -
man/SyrupSwimming.Rd | 17 +-
man/TeenDeaths.Rd | 15 --
man/Telomeres.Rd | 18 +-
man/TimeOfDeath.Rd | 14 -
man/Toads.Rd | 9 -
man/Tobacco.Rd | 16 +-
man/Tobacco2.Rd | 18 +-
man/ToothAge.Rd | 15 +-
man/TreeSeedlings.Rd | 16 +-
man/Trematodes.Rd | 15 +-
man/Trillium.Rd | 15 +-
man/Truffles.Rd | 20 +-
man/TsetseLearning.Rd | 16 +-
man/TwoKids.Rd | 13 -
man/VampireBites.Rd | 9 -
man/VasopressinVoles.Rd | 20 +-
man/Vines.Rd | 16 +-
man/VoleDispersal.Rd | 12 -
man/WalkingStickFemurs.Rd | 17 +-
man/WalkingStickHeads.Rd | 20 +-
man/WeddellSeals.Rd | 19 +-
man/WillsDebates.Rd | 9 -
man/WillsPresidents.Rd | 11 -
man/WolfTeeth.Rd | 18 +-
man/Wolves.Rd | 17 +-
man/WorldCup.Rd | 5
man/WrasseSexes.Rd | 6
man/YeastGenes.Rd | 12 -
man/ZebraFinchBeaks.Rd | 17 +-
man/ZebraFinches.Rd | 17 +-
man/ZooMortality.Rd | 13 -
man/Zooplankton.Rd | 19 +-
man/abd-package.Rd | 30 ++--
man/abdData.Rd | 45 ++----
man/dataInfo.Rd | 9 -
man/histochart.Rd | 32 +---
man/themes.Rd | 28 +--
156 files changed, 1455 insertions(+), 1693 deletions(-)