Tue, 03 Feb 2015

Package TSP updated to version 1.0-10 with previous version 1.0-9 dated 2014-07-16

Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling salesperson problem (also traveling salesman problem; TSP). The package provides some simple algorithms and an interface to Concorde, the currently fastest TSP solver. Concorde itself is not included in the package and has to be obtained separately.
Author: Michael Hahsler [aut, cre, cph], Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler

Diff between TSP versions 1.0-9 dated 2014-07-16 and 1.0-10 dated 2015-02-03

 DESCRIPTION                    |   12 +++++------
 MD5                            |   44 ++++++++++++++++++++---------------------
 R/ATSP.R                       |    2 -
 R/TSP.R                        |    3 +-
 R/cut_tour.R                   |    1 
 R/tsp_concorde.R               |   26 +++++++++++++-----------
 build/vignette.rds             |binary
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 man/ATSP.Rd                    |    1 
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 23 files changed, 68 insertions(+), 47 deletions(-)

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Package qvcalc updated to version 0.8-9 with previous version 0.8-8 dated 2012-06-05

Title: Quasi Variances for Factor Effects in Statistical Models
Description: Functions to compute quasi variances and associated measures of approximation error
Author: David Firth
Maintainer: David Firth

Diff between qvcalc versions 0.8-8 dated 2012-06-05 and 0.8-9 dated 2015-02-03

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 qvcalc-0.8-9/qvcalc/man/worstErrors.Rd |    2 +-
 7 files changed, 35 insertions(+), 27 deletions(-)

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New package PoisBinOrd with initial version 1.0
Package: PoisBinOrd
Type: Package
Title: Data Generation with Poisson, Binary and Ordinal Components
Version: 1.0
Date: 2015-02-03
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan
Description: Generation of multiple count, binary and ordinal variables simultaneously given the marginal characteristics and association structure. Throughout the package, the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
License: GPL (>= 2)
Depends: corpcor, GenOrd, Matrix, mvtnorm
Packaged: 2015-02-03 20:22:06 UTC; arcelik
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-03 23:14:23

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New package netgen with initial version 1.0
Package: netgen
Type: Package
Title: Network Generator for Combinatorial Graph Problems
Description: Methods for the generation of a wide range of network geographies, e.g., grid networks or clustered networks. Useful for the generation of benchmarking instances for the investigation of, e.g., Vehicle-Routing-Problems or Travelling Salesperson Problems.
Version: 1.0
Date: 2015-01-20
Authors@R: c(person("Jakob", "Bossek", email = "j.bossek@gmail.com", role = c("aut", "cre")))
Maintainer: Jakob Bossek
URL: https://github.com/jakobbossek/netgen
BugReports: https://github.com/jakobbossek/netgen/issues
License: BSD_3_clause + file LICENSE
Depends: BBmisc (>= 1.6), mvtnorm (>= 1.0-2), lhs (>= 0.10)
Imports: ggplot2, lpSolve, checkmate (>= 1.5.1)
Suggests: testthat
Packaged: 2015-02-03 20:25:07 UTC; jboss
Author: Jakob Bossek [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-03 23:18:48

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Package FactoClass updated to version 1.1.1 with previous version 1.1.0 dated 2013-07-18

Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial analysis and cluster methods.
Author: Campo Elias Pardo , Pedro Cesar del Campo and Camilo Jose Torres , with the contributions from Ivan Diaz , Mauricio Sadinle .
Maintainer: Campo Elias Pardo

Diff between FactoClass versions 1.1.0 dated 2013-07-18 and 1.1.1 dated 2015-02-03

 FactoClass-1.1.0/FactoClass/FactoClass-Ex.R   |only
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 10 files changed, 590 insertions(+), 574 deletions(-)

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New package gelnet with initial version 1.0
Package: gelnet
Version: 1.0
Date: 2015-02-01
License: GPL (>= 3)
Title: Generalized Elastic Nets
Description: The package implements several extensions of the elastic net regularization scheme. These extensions include individual feature penalties for the L1 term and feature-feature penalties for the L2 term.
Author: Artem Sokolov
Maintainer: Artem Sokolov
Depends: R (>= 3.1.0)
Packaged: 2015-01-23 21:01:51 UTC; sokolov
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-04 00:50:14

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New package AncestryMapper with initial version 1.2
Package: AncestryMapper
Title: Assigning Ancestry Based on Population References
Version: 1.2
Date: 2015-01-29
Author: Tiago R Magalhaes, Darren J Fitzpatrick, Eoghan O'Halloran
Maintainer: Tiago R Magalhaes
Description: Assigns genetic ancestry to an individual, relating to well studied populations, with world-wide coverage, and studies relationships between local and global populations.
License: GPL-2
LazyLoad: yes
Packaged: 2015-02-03 18:20:01 UTC; tiago
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-03 23:10:18

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Package RcmdrPlugin.survival updated to version 1.0-5 with previous version 1.0-4 dated 2013-01-17

Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the survival package, with dialogs for Cox models, parametric survival regression models, estimation of survival curves, and testing for differences in survival curves, along with data-management facilities and a variety of tests, diagnostics and graphs.
Author: John Fox
Maintainer: John Fox

Diff between RcmdrPlugin.survival versions 1.0-4 dated 2013-01-17 and 1.0-5 dated 2015-02-03

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 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/R/Survfit.R                         |    6 
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/R/misc.R                            |   12 -
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/R/quantile.survfit.R                |   76 +++++-----
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/R/survregModel.R                    |    4 
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/R/unfold.R                          |    2 
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/inst/CHANGES                        |    6 
 RcmdrPlugin.survival-1.0-5/RcmdrPlugin.survival/inst/etc/menus.txt                  |    5 
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Package poppr updated to version 1.1.3 with previous version 1.1.2 dated 2014-07-29

Title: Genetic Analysis of Populations With Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the adegenet package.
Author: Zhian N. Kamvar [cre, aut], Javier F. Tabima [aut], Niklaus J. Grunwald [ths]
Maintainer: Zhian N. Kamvar

Diff between poppr versions 1.1.2 dated 2014-07-29 and 1.1.3 dated 2015-02-03

 DESCRIPTION                                |   29 ++-
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 NAMESPACE                                  |    2 
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 R/Index_calculations.r                     |    8 -
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Package poisDoubleSamp updated to version 1.1 with previous version 1.0 dated 2015-02-02

Title: Confidence Intervals with Poisson Double Sampling
Description: Functions to create confidence intervals for ratios of Poisson rates under misclassification using double sampling.
Author: David Kahle [aut, cre], Phil Young [aut], Dean Young [aut]
Maintainer: David Kahle

Diff between poisDoubleSamp versions 1.0 dated 2015-02-02 and 1.1 dated 2015-02-03

 DESCRIPTION                              |    8 ++++----
 MD5                                      |    6 +++---
 src/unNormedMargLogLikeCpp.cpp           |    4 ++--
 src/unNormedMargLogLikeMaxLogTermCpp.cpp |    8 ++++----
 4 files changed, 13 insertions(+), 13 deletions(-)

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Package maptools updated to version 0.8-34 with previous version 0.8-30 dated 2014-06-05

Title: Tools for Reading and Handling Spatial Objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHG shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
Author: Roger Bivand [cre, aut], Nicholas Lewin-Koh [aut], Edzer Pebesma [ctb], Eric Archer [ctb], Adrian Baddeley [ctb], Hans-Jörg Bibiko [ctb], Steven Brey [ctb], Jonathan Callahan [ctb], German Carrillo [ctb], Stéphane Dray [ctb], David Forrest [ctb], Michael Friendly [ctb], Patrick Giraudoux [ctb], Duncan Golicher [ctb], Virgilio Gómez Rubio [ctb], Patrick Hausmann [ctb], Karl Ove Hufthammer [ctb], Thomas Jagger [ctb], Sebastian Luque [ctb], Don MacQueen [ctb], Andrew Niccolai [ctb], Edzer Pebesma [ctb], Oscar Perpiñán Lamigueiro [ctb], Tom Short [ctb], Greg Snow [ctb], Ben Stabler [ctb], Murray Stokely [ctb], Rolf Turner [ctb]
Maintainer: Roger Bivand

Diff between maptools versions 0.8-30 dated 2014-06-05 and 0.8-34 dated 2015-02-03

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Package llama updated to version 0.8.1 with previous version 0.8 dated 2015-01-31

Title: Leveraging Learning to Automatically Manage Algorithms
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre], Bernd Bischl [aut], Barry Hurley [ctb], Talal Rahwan [ctb]
Maintainer: Lars Kotthoff

Diff between llama versions 0.8 dated 2015-01-31 and 0.8.1 dated 2015-02-03

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New package stagePop with initial version 1.0-1
Package: stagePop
Type: Package
Title: Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time
Version: 1.0-1
Date: 2015-02-03
Author: Helen Kettle
Maintainer: David Nutter
Description: Provides facilities to implement and run population models of stage-structured species...
NeedsCompilation: no
Suggests: R.rsp
VignetteBuilder: R.rsp
License: GPL-3 | file LICENSE
Imports: deSolve,PBSddesolve
Collate: 'SolverOptions.R' 'addNamesToList.R' 'checkICs.R' 'checkSolution.R' 'deathFunction.R' 'reproductionFunction.R' 'immigrationFunction.R' 'emigrationFunction.R' 'durationFunction.R' 'developmentFunction.R' 'defaultRateFunctions.R' 'derivDede.R' 'derivPBS.R' 'genericPlot.R' 'initConditions.R' 'namingVariables.R' 'plotStrains.R' 'popModel.R' 'rateFuncCheck.R' 'rateFunction.R' 'runStagePopExample.R' 'stagePop-package.R' 'sumStrains.R' 'vecDivideFunc.R' 'vecToMatList.R'
Packaged: 2015-02-03 12:45:26 UTC; davidn
Repository: CRAN
Date/Publication: 2015-02-03 17:43:24

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New package SAENET with initial version 1.0
Package: SAENET
Type: Package
Title: A Stacked Autoencoder Implementation with Interface to 'neuralnet'
Version: 1.0
Date: 2015-01-05
Authors@R: c(person("Stephen", "Hogg", role = c("aut", "cre"), email = "saenet.r@gmail.com"), person("Eugene", "Dubossarsky", role = "aut"))
Description: This package implements a stacked sparse autoencoder for dimension reduction of features and pre-training of feed-forward neural networks with the neuralnet package. The package also includes a predict function for the stacked autoencoder object to generate the compressed representation of new data if required. For the purposes of this package, 'stacked' is defined in line with http://ufldl.stanford.edu/wiki/index.php/Stacked_Autoencoders . The underlying sparse autoencoder is defined in the documentation of 'autoencoder'.
License: GPL-3
URL: http://ufldl.stanford.edu/wiki/index.php/Stacked_Autoencoders , http://cran.r-project.org/web/packages/autoencoder/
Imports: autoencoder, neuralnet
NeedsCompilation: no
Repository: CRAN
Packaged: 2015-02-03 11:26:56 UTC; Stephen
Author: Stephen Hogg [aut, cre], Eugene Dubossarsky [aut]
Maintainer: Stephen Hogg
Date/Publication: 2015-02-03 17:30:03

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New package RPPairwiseDesign with initial version 1.0
Package: RPPairwiseDesign
Type: Package
Title: Resolvable partially pairwise balanced design and Space-filling design via association scheme
Version: 1.0
Date: 2015-01-19
Author: Mohamed Laib, Imane Rezgui and Zebida Gheribi-Aoulmi
Maintainer: Mohamed Laib
Description: Using some association schemes to obtain a new series of resolvable partially pairwise balanced designs (RPPBD) and space-filling designs.
License: GPL-3
Packaged: 2015-02-03 12:09:09 UTC; admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-03 18:09:13

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Package relimp updated to version 1.0-4 with previous version 1.0-3 dated 2011-10-17

Title: Relative Contribution of Effects in a Regression Model
Description: Functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.
Author: David Firth with contributions from Heather Turner
Maintainer: David Firth

Diff between relimp versions 1.0-3 dated 2011-10-17 and 1.0-4 dated 2015-02-03

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Package Rcmdr updated to version 2.1-6 with previous version 2.1-5 dated 2014-12-10

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Milan Bouchet-Valat [aut], Liviu Andronic [ctb], Michael Ash [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb], Kevin Wright [ctb]
Maintainer: John Fox

Diff between Rcmdr versions 2.1-5 dated 2014-12-10 and 2.1-6 dated 2015-02-03

 DESCRIPTION          |   13 
 MD5                  |   14 
 NAMESPACE            |   10 
 NEWS                 |    4 
 R/model-menu.R       |    6 
 R/utilities.R        | 5994 +++++++++++++++++++++++++--------------------------
 man/Confint.Rd       |   10 
 man/Rcmdr-package.Rd |    4 
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More information about Rcmdr at CRAN
Permanent link

Package ParamHelpers updated to version 1.5 with previous version 1.4 dated 2014-10-10

Title: Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning.
Description: Functions for parameter descriptions and operations in black-box optimization, tuning and machine learning. Parameters can be described (type, constraints, defaults, etc.), combined to parameter sets and can in general be programmed on. A useful OptPath object (archive) to log function evaluations is also provided.
Author: Bernd Bischl [aut, cre], Michel Lang [aut], Jakob Bossek [aut], Daniel Horn [aut]
Maintainer: Bernd Bischl

Diff between ParamHelpers versions 1.4 dated 2014-10-10 and 1.5 dated 2015-02-03

 DESCRIPTION                                  |   19 +--
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 NAMESPACE                                    |    2 
 NEWS                                         |    6 -
 R/OptPath.R                                  |    7 -
 R/OptPath_getter.R                           |    2 
 R/OptPath_setter.R                           |    3 
 R/ParamSet.R                                 |    8 -
 R/aParam.R                                   |    4 
 R/convertParamSetToIrace.R                   |    4 
 R/generateDesign.R                           |    2 
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 man/dropParams.Rd                            |    3 
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 man/filterParams.Rd                          |    3 
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 man/getLower.Rd                              |    3 
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 man/hasForbidden.Rd                          |    3 
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 man/isType.Rd                                |    3 
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 man/repairPoint.Rd                           |    3 
 man/sampleValue.Rd                           |    3 
 man/sampleValues.Rd                          |    3 
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 man/setOptPathElEOL.Rd                       |    3 
 man/setValueCNames.Rd                        |    3 
 man/trafoOptPath.Rd                          |    3 
 man/trafoValue.Rd                            |    3 
 tests/testthat/test_OptPath.R                |    6 -
 tests/testthat/test_convertParamSetToIrace.R |   16 ++-
 tests/testthat/test_generateDesign.R         |   11 +-
 tests/testthat/test_getDefaults.R            |   15 ++
 72 files changed, 278 insertions(+), 172 deletions(-)

More information about ParamHelpers at CRAN
Permanent link

Package NMOF updated to version 0.34-1 with previous version 0.34-0 dated 2014-11-05

Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the book 'Numerical Methods and Optimization in Finance' by M. Gilli, D. Maringer and E. Schumann. The package provides implementations of several optimisation heuristics, such as Differential Evolution, Genetic Algorithms and Threshold Accepting. There are also functions for the valuation of financial instruments, such as bonds and options, and functions that help with stochastic simulations.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann

Diff between NMOF versions 0.34-0 dated 2014-11-05 and 0.34-1 dated 2015-02-03

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Package NAM updated to version 1.0.2.2 with previous version 1.0.2.1 dated 2015-01-24

Title: Nested Association Mapping analysis
Description: Package designed for association studies in nested association mapping (NAM) panels, but it also can handle biparental and random populations. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier

Diff between NAM versions 1.0.2.1 dated 2015-01-24 and 1.0.2.2 dated 2015-02-03

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 6 files changed, 21 insertions(+), 16 deletions(-)

More information about NAM at CRAN
Permanent link

Package MKmisc updated to version 0.97 with previous version 0.96 dated 2013-11-17

Title: Miscellaneous Functions from M. Kohl
Description: Miscellaneous Functions from M. Kohl
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl

Diff between MKmisc versions 0.96 dated 2013-11-17 and 0.97 dated 2015-02-03

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Package gamlss.dist updated to version 4.3-4 with previous version 4.3-1 dated 2014-09-17

Title: Distributions To Be Used For GAMLSS Modelling
Description: This package contains the distributions for GAMLSS modelling.
Author: Mikis Stasinopoulos , Bob Rigby with contributions from Calliope Akantziliotou, Gillian Heller, Raydonal Ospina , Nicoletta Motpan, Fiona McElduff, Vlasios Voudouris, Majid Djennad, Marco Enea and Alexios Ghalanos.
Maintainer: Mikis Stasinopoulos

Diff between gamlss.dist versions 4.3-1 dated 2014-09-17 and 4.3-4 dated 2015-02-03

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Permanent link

Package divo updated to version 0.1.1 with previous version 0.1 dated 2015-01-29

Title: Tools for Analysis of Diversity and Similarity in Biological Systems
Description: A set of tools for empirical analysis of diversity (a number and frequency of different types in population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.
Author: Maciej Pietrzak, Michal Seweryn, Grzegorz Rempala
Maintainer: Maciej Pietrzak

Diff between divo versions 0.1 dated 2015-01-29 and 0.1.1 dated 2015-02-03

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More information about divo at CRAN
Permanent link

Package distrDoc updated to version 2.5.1 with previous version 2.5 dated 2013-09-13

Title: Documentation for Packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
Description: provides documentation in form of a common vignette to packages distr, distrEx, distrMod, distrSim, distrTEst, distrTeach, and distrEllipse
Author: Florian Camphausen [ctb] (contributed as student to the documented packages in the initial phase --2005), Matthias Kohl [aut, cph], Peter Ruckdeschel [cre, cph], Thomas Stabla [ctb] (contributed as student to the documented packages in the initial phase --2005)
Maintainer: Peter Ruckdeschel

Diff between distrDoc versions 2.5 dated 2013-09-13 and 2.5.1 dated 2015-02-03

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More information about distrDoc at CRAN
Permanent link

Package decompr updated to version 2.1.0 with previous version 2.0 dated 2015-01-27

Title: Global Value Chains Decomposition (Wang-Wei-Zhu and Leontief)
Description: Two Global Value Chains decompositions are implemented. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Leontief decomposition (default) derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Author: Bastiaan Quast [aut, cre], Fei Wang [aut], Victor Kummritz [aut]
Maintainer: Bastiaan Quast

Diff between decompr versions 2.0 dated 2015-01-27 and 2.1.0 dated 2015-02-03

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 NAMESPACE              |    1 
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 R/decomp.R             |   10 ++++++++-
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 README.md              |   26 +++++++-----------------
 man/decomp.Rd          |    4 +--
 man/kung_fu.Rd         |    4 +--
 man/leontief.Rd        |    2 -
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More information about decompr at CRAN
Permanent link

New package BinOrdNonNor with initial version 1.0
Package: BinOrdNonNor
Type: Package
Title: Concurrent Generation of Binary, Ordinal and Continuous Data
Version: 1.0
Date: 2015-01-30
Author: Yue Wang, Hakan Demirtas
Maintainer: Yue Wang
Description: Generation of samples from a mix of binary, ordinal and continuous random variables with a pre-specified correlation matrix and marginal distributions.
License: GPL (>= 2)
Depends: GenOrd, OrdNor
Imports: BB, corpcor, Matrix, mvtnorm
Packaged: 2015-02-03 14:45:13 UTC; am00403380
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-03 18:09:51

More information about BinOrdNonNor at CRAN
Permanent link

Package gamlss.util updated to version 4.3-2 with previous version 4.2-7 dated 2013-07-03

Title: GAMLSS Utilities
Description: Extra Functions For GAMLSS And Others Models
Author: Mikis Stasinopoulos , Bob Rigby , Paul Eilers
Maintainer: Mikis Stasinopoulos

Diff between gamlss.util versions 4.2-7 dated 2013-07-03 and 4.3-2 dated 2015-02-03

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 gamlss.util-4.3-2/gamlss.util/R/plotSimpleGamlss-3-7-13.R |    7 
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Package gamlss.tr updated to version 4.3-1 with previous version 4.2-7 dated 2014-01-18

Title: Generating and fitting truncated (gamlss.family) distributions
Description: This is an add on package to GAMLSS. The purpose of this package is to allow users to defined truncated distributions in GAMLSS models. The main function gen.trun() generates truncated version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos , Bob Rigby
Maintainer: Mikis Stasinopoulos

Diff between gamlss.tr versions 4.2-7 dated 2014-01-18 and 4.3-1 dated 2015-02-03

 DESCRIPTION    |   10 +++++-----
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 4 files changed, 13 insertions(+), 10 deletions(-)

More information about gamlss.tr at CRAN
Permanent link

Package gamlss updated to version 4.3-4 with previous version 4.3-1 dated 2014-09-17

Title: Generalised Additive Models for Location Scale and Shape.
Description: The Library For Fitting GAMLSS Models
Author: Mikis Stasinopoulos , Bob Rigby Vlasios Voudouris with contributions from Calliope Akantziliotou, and Marco Enea
Maintainer: Mikis Stasinopoulos

Diff between gamlss versions 4.3-1 dated 2014-09-17 and 4.3-4 dated 2015-02-03

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More information about gamlss at CRAN
Permanent link

Package BBmisc updated to version 1.9 with previous version 1.8 dated 2014-10-30

Title: Miscellaneous Helper Functions for B. Bischl
Description: Miscellaneous helper functions for and from B. Bischl and some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl [aut, cre], Michel Lang [aut], Jakob Bossek [aut], Daniel Horn [aut], Jakob Richter [aut]
Maintainer: Bernd Bischl

Diff between BBmisc versions 1.8 dated 2014-10-30 and 1.9 dated 2015-02-03

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Package mpt updated to version 0.5-1 with previous version 0.5-0 dated 2014-10-06

Title: Multinomial Processing Tree (MPT) Models
Description: Fitting and testing multinomial processing tree models, a class of statistical models for categorical data. The parameters are the link probabilities of a tree-like graph and represent the latent cognitive processing steps executed to arrive at observable response categories (Batchelder & Riefer, 1999; Erdfelder et al., 2009; Riefer & Batchelder, 1988).
Author: Florian Wickelmaier [aut, cre], Achim Zeileis [aut]
Maintainer: Florian Wickelmaier

Diff between mpt versions 0.5-0 dated 2014-10-06 and 0.5-1 dated 2015-02-03

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Package MetaLandSim updated to version 0.2 with previous version 0.1 dated 2014-11-09

Title: Metapopulation and Landscape Simulation
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre

Diff between MetaLandSim versions 0.1 dated 2014-11-09 and 0.2 dated 2015-02-03

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Package gamlss.cens updated to version 4.3.1 with previous version 4.2.7 dated 2014-01-11

Title: Fitting an interval response variable using gamlss.family distributions
Description: This is an add on package to GAMLSS. The purpose of this package is to allow users to fit interval response variables in GAMLSS models. The main function gen.cens() generates a censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos , Bob Rigby , Nicoleta Mortan
Maintainer: Mikis Stasinopoulos

Diff between gamlss.cens versions 4.2.7 dated 2014-01-11 and 4.3.1 dated 2015-02-03

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Package gamlss.add updated to version 4.3-3 with previous version 4.3-0 dated 2014-06-03

Title: GAMLSS Extra Additive terms
Description: Extra additive terms for GAMLSS models.
Author: Mikis Stasinopoulos , Bob Rigby
Maintainer: Mikis Stasinopoulos

Diff between gamlss.add versions 4.3-0 dated 2014-06-03 and 4.3-3 dated 2015-02-03

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Package DetMCD updated to version 0.0.2 with previous version 0.0.1 dated 2014-10-21

Title: DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
Description: DetMCD is a new algorithm for robust and deterministic estimation of location and scatter. The benefits of robust and deterministic estimation are explained in Hubert, M., Rousseeuw, P.J. and Verdonck, T. (2012),"A deterministic algorithm for robust location and scatter", Journal of Computational and Graphical Statistics, Volume 21, Number 3, Pages 618--637.
Author: Vakili Kaveh [aut, cre], Mia Hubert [ths]
Maintainer: Vakili Kaveh

Diff between DetMCD versions 0.0.1 dated 2014-10-21 and 0.0.2 dated 2015-02-03

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Package biogram updated to version 1.1 with previous version 1.0 dated 2014-12-19

Title: N-Gram Analysis of Biological Sequences
Description: Tools for extraction and analysis of various n-grams (sequences of n items) derived from biological sequences (proteins or nucleic acids). To deal with the dimensionality of the n-gram data, biogram uses QuiPT (quick permutation test) for fast feature-filtering.
Author: Michal Burdukiewicz [cre, aut], Piotr Sobczyk [aut], Chris Lauber [aut]
Maintainer: Michal Burdukiewicz

Diff between biogram versions 1.0 dated 2014-12-19 and 1.1 dated 2015-02-03

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Package V8 updated to version 0.5 with previous version 0.4 dated 2015-01-12

Title: Embedded JavaScript Engine
Description: V8 is Google's open source, high performance JavaScript engine. It is written in C++ and implements ECMAScript as specified in ECMA-262, 5th edition. In addition, this package implements typed arrays as specified in ECMA 6 in order to support high performance computing and libraries compiled with emscripten.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms

Diff between V8 versions 0.4 dated 2015-01-12 and 0.5 dated 2015-02-03

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Package seacarb updated to version 3.0.6 with previous version 3.0.5 dated 2015-01-12

Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph], Jean-Marie Epitalon [aut], Heloise Lavigne [aut], James Orr [ctb], Bernard Gentili [ctb], Andreas Hofmann [ctb], Aurélien Proye [ctb], Karline Soetaert [ctb], James Rae [ctb]
Maintainer: Jean-Pierre Gattuso

Diff between seacarb versions 3.0.5 dated 2015-01-12 and 3.0.6 dated 2015-02-03

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Package wgaim updated to version 1.4-6 with previous version 1.4-5 dated 2015-01-31

Title: Whole Genome Average Interval Mapping for QTL Detection using Mixed Models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor , Simon Diffey , Ari Verbyla and Brian Cullis .
Maintainer: Julian Taylor

Diff between wgaim versions 1.4-5 dated 2015-01-31 and 1.4-6 dated 2015-02-03

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Package RandomFields updated to version 3.0.62 with previous version 3.0.60 dated 2015-01-28

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [ctr], Sebastian Gross [ctr], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather

Diff between RandomFields versions 3.0.60 dated 2015-01-28 and 3.0.62 dated 2015-02-03

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Package QuasiSeq updated to version 1.0-6 with previous version 1.0-5 dated 2015-01-05

Title: Analyzing RNA Sequence Count Tables Using Quasi-likelihood
Description: Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with QL, QLShrink and QLSpline methods (Lund, Nettleton, McCarthy, and Smyth, 2012).
Author: Steve Lund and Long Qu
Maintainer: Steve Lund

Diff between QuasiSeq versions 1.0-5 dated 2015-01-05 and 1.0-6 dated 2015-02-03

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Package peptider updated to version 0.1.7 with previous version 0.1.6 dated 2014-12-03

Title: Evaluation of Diversity in Nucleotide Libraries
Description: Functions for evaluating diversity in peptide libraries, including NNN, NNB, NNK/S, and 20/20 schemes. This includes expected coverage, relative efficiency, and functional diversity of the library.
Author: Heike Hofmann, Eric Hare, ggobi Foundation
Maintainer: Eric Hare

Diff between peptider versions 0.1.6 dated 2014-12-03 and 0.1.7 dated 2015-02-03

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Package parallelMap updated to version 1.2 with previous version 1.1 dated 2014-07-03

Title: Unified interface to Some Popular Parallelization Back-ends for Interactive Usage and Package Development
Description: Map over lists in parallel. Supports local, multicore, mpi and BatchJobs mode. Allows "tagging" of the parallel operation with a level name that can be later selected by the user to switch on parallel execution for exactly this operation.
Author: Bernd Bischl , Michel Lang
Maintainer: Bernd Bischl

Diff between parallelMap versions 1.1 dated 2014-07-03 and 1.2 dated 2015-02-03

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Package MatrixEQTL updated to version 2.1.1 with previous version 2.1.0 dated 2014-02-25

Title: Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
Description: Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs.
Author: Andrey Shabalin
Maintainer: Andrey Shabalin

Diff between MatrixEQTL versions 2.1.0 dated 2014-02-25 and 2.1.1 dated 2015-02-03

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Package discreteRV updated to version 1.1.4 with previous version 1.1.3 dated 2014-12-03

Title: Functions to Create and Manipulate Discrete Random Variables
Description: discreteRV implements a set of functions that allow computations involving discrete random variables. It uses a syntax which is familiar to that which is used in mathematical statistics and probability courses.
Author: Andreas Buja
Maintainer: Eric Hare

Diff between discreteRV versions 1.1.3 dated 2014-12-03 and 1.1.4 dated 2015-02-03

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More information about discreteRV at CRAN
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Package CEC updated to version 0.9.3 with previous version 0.9.2 dated 2014-11-15

Title: Cross-Entropy Clustering
Description: Cross-Entropy Clustering (CEC) divides the data into Gaussian type clusters. It performs the automatic reduction of unnecessary clusters, while at the same time allows the simultaneous use of various type Gaussian mixture models.
Author: Konrad Kamieniecki [aut, cre], Przemyslaw Spurek [ctb]
Maintainer: Konrad Kamieniecki

Diff between CEC versions 0.9.2 dated 2014-11-15 and 0.9.3 dated 2015-02-03

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More information about CEC at CRAN
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