Title: Entrez in R
Diff between rentrez versions 0.3.1 dated 2014-09-24 and 0.4 dated 2015-02-08
Description: Rentrez provides an R interact to the NCBI's EUtils API allowing
users to search databases like genbank and pubmed, process the resulting
files and pull data into their R sessions.
Author: David Winter [aut, cre],
Scott Chamberlain [ctb]
Maintainer: David Winter
rentrez-0.3.1/rentrez/R/make_entrez_query.r |only
rentrez-0.3.1/rentrez/R/set_globals.r |only
rentrez-0.3.1/rentrez/man/entrez_email.Rd |only
rentrez-0.4/rentrez/DESCRIPTION | 8
rentrez-0.4/rentrez/MD5 | 64 +++--
rentrez-0.4/rentrez/NAMESPACE | 16 +
rentrez-0.4/rentrez/NEWS | 47 ++-
rentrez-0.4/rentrez/R/base.r |only
rentrez-0.4/rentrez/R/entrez_citmatch.r |only
rentrez-0.4/rentrez/R/entrez_fetch.r | 6
rentrez-0.4/rentrez/R/entrez_global_query.r | 6
rentrez-0.4/rentrez/R/entrez_info.r |only
rentrez-0.4/rentrez/R/entrez_link.r | 25 +-
rentrez-0.4/rentrez/R/entrez_post.r | 2
rentrez-0.4/rentrez/R/entrez_search.r | 84 ++++---
rentrez-0.4/rentrez/R/entrez_summary.r | 196 ++++++++++++----
rentrez-0.4/rentrez/build/vignette.rds |binary
rentrez-0.4/rentrez/inst/doc/rentrez_tutorial.R | 21 +
rentrez-0.4/rentrez/inst/doc/rentrez_tutorial.Rmd | 57 +++-
rentrez-0.4/rentrez/inst/doc/rentrez_tutorial.html | 249 +++++++++++++--------
rentrez-0.4/rentrez/man/entrez_citmatch.Rd |only
rentrez-0.4/rentrez/man/entrez_db_links.Rd |only
rentrez-0.4/rentrez/man/entrez_db_searchable.Rd |only
rentrez-0.4/rentrez/man/entrez_db_summary.Rd |only
rentrez-0.4/rentrez/man/entrez_dbs.Rd |only
rentrez-0.4/rentrez/man/entrez_fetch.Rd | 13 -
rentrez-0.4/rentrez/man/entrez_global_query.Rd | 11
rentrez-0.4/rentrez/man/entrez_info.Rd |only
rentrez-0.4/rentrez/man/entrez_link.Rd | 29 +-
rentrez-0.4/rentrez/man/entrez_post.Rd | 9
rentrez-0.4/rentrez/man/entrez_search.Rd | 38 ++-
rentrez-0.4/rentrez/man/entrez_summary.Rd | 36 ++-
rentrez-0.4/rentrez/man/parse_pubmed_xml.Rd | 3
rentrez-0.4/rentrez/man/rentrez.Rd | 3
rentrez-0.4/rentrez/tests/testthat/test_citmatch.r |only
rentrez-0.4/rentrez/tests/testthat/test_fetch.r | 26 +-
rentrez-0.4/rentrez/tests/testthat/test_info.r |only
rentrez-0.4/rentrez/tests/testthat/test_search.r | 9
rentrez-0.4/rentrez/tests/testthat/test_webenv.r | 2
rentrez-0.4/rentrez/vignettes/rentrez_tutorial.Rmd | 57 +++-
40 files changed, 686 insertions(+), 331 deletions(-)
Title: Identifying Functional Polymorphisms
Diff between IFP versions 0.1.1 dated 2015-01-10 and 0.1.2 dated 2015-02-08
Description: A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.
Author: Leeyoung Park
Maintainer: Leeyoung Park
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
R/drgen.gm.R | 4 ++--
R/drggn.gm.R | 2 +-
R/drgn.gm.R | 2 +-
man/iter.mcmc.Rd | 16 +++++++++++++++-
6 files changed, 27 insertions(+), 13 deletions(-)
Title: Geostatistical Analysis and Design of Optimal Spatial Sampling
Networks
Diff between geospt versions 1.0-0 dated 2014-10-08 and 1.0-1 dated 2015-02-08
Description: Estimation of the variogram through trimmed mean, radial basis
functions (optimization, prediction and cross-validation), summary
statistics from cross-validation, pocket plot, and design of
optimal sampling networks through sequential and simultaneous
points methods.
Author: Carlos Melo
Maintainer: Alí Santacruz
DESCRIPTION | 23 ++----
MD5 | 26 +++---
NAMESPACE | 3
R/graph.rbf.R | 186 +++++++++++++++++++++++---------------------------
R/rbf.R | 74 ++++++++-----------
R/rbf.tcv.R | 5 +
man/RBF.phi.Rd | 2
man/criterio.cv.Rd | 2
man/est.variograms.Rd | 6 -
man/geospt-package.Rd | 7 -
man/graph.rbf.Rd | 30 ++++----
man/rbf.cv.Rd | 2
man/rbf.cv1.Rd | 6 -
man/rbf.tcv.Rd | 2
14 files changed, 180 insertions(+), 194 deletions(-)
Title: Bradley-Terry Models
Diff between BradleyTerry2 versions 1.0-5 dated 2014-06-16 and 1.0-6 dated 2015-02-08
Description: Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage.
Author: Heather Turner and David Firth
Maintainer: Heather Turner
BradleyTerry2-1.0-5/BradleyTerry2/data/springall.txt.gz |only
BradleyTerry2-1.0-6/BradleyTerry2/DESCRIPTION | 10 -
BradleyTerry2-1.0-6/BradleyTerry2/MD5 | 52 +++++-----
BradleyTerry2-1.0-6/BradleyTerry2/NAMESPACE | 1
BradleyTerry2-1.0-6/BradleyTerry2/R/BTabilities.R | 46 +++++---
BradleyTerry2-1.0-6/BradleyTerry2/R/BTm.R | 5
BradleyTerry2-1.0-6/BradleyTerry2/R/BTm.setup.R | 4
BradleyTerry2-1.0-6/BradleyTerry2/R/Diff.R | 15 ++
BradleyTerry2-1.0-6/BradleyTerry2/R/model.matrix.BTm.R |only
BradleyTerry2-1.0-6/BradleyTerry2/build/vignette.rds |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/CEMS.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/chameleons.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/citations.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/icehockey.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/seeds.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/sound.fields.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/data/springall.rda |binary
BradleyTerry2-1.0-6/BradleyTerry2/inst/NEWS | 16 +++
BradleyTerry2-1.0-6/BradleyTerry2/inst/doc/BradleyTerry.R | 12 +-
BradleyTerry2-1.0-6/BradleyTerry2/inst/doc/BradleyTerry.Rnw | 29 +++--
BradleyTerry2-1.0-6/BradleyTerry2/inst/doc/BradleyTerry.pdf |binary
BradleyTerry2-1.0-6/BradleyTerry2/man/BTm.Rd | 11 +-
BradleyTerry2-1.0-6/BradleyTerry2/man/CEMS.Rd | 4
BradleyTerry2-1.0-6/BradleyTerry2/man/flatlizards.Rd | 4
BradleyTerry2-1.0-6/BradleyTerry2/man/football.Rd | 10 +
BradleyTerry2-1.0-6/BradleyTerry2/tests/flatlizards.Rout.save | 11 +-
BradleyTerry2-1.0-6/BradleyTerry2/tests/predict.Rout.save | 11 +-
BradleyTerry2-1.0-6/BradleyTerry2/vignettes/BradleyTerry.Rnw | 29 +++--
28 files changed, 168 insertions(+), 102 deletions(-)
More information about nestedRanksTest at CRAN
Permanent link
Title: Causal Effect Estimation and Diagnostics with Support Vector
Machines
Diff between SVMMatch versions 1.0 dated 2015-02-07 and 1.1 dated 2015-02-08
Description: Causal effect estimation in observational data often requires identifying a set of untreated observations that are comparable to some treated group of interest. This package provides a suite of functions for identifying such a set of observations and for implementing standard and new diagnostics tools. The primary function, svmmatch(), uses support vector machines to identify a region of common support between treatment and control groups. A sensitivity analysis, balance checking, and assessment of the region of overlap between treated and control groups is included. The Bayesian implementation allows for recovery of uncertainty estimates for the treatment effect and all other parameters.
Author: Marc Ratkovic
Maintainer: Marc Ratkovic
DESCRIPTION | 9 +++++----
MD5 | 8 +++++---
NEWS |only
man/LaLonde.Rd | 2 +-
src/Makevars | 2 +-
src/Makevars.win |only
6 files changed, 12 insertions(+), 9 deletions(-)
Title: Rcpp Integration for MLPACK Library
Diff between RcppMLPACK versions 1.0.10 dated 2014-12-21 and 1.0.10-2 dated 2015-02-08
Description: MLPACK is an intuitive, fast, scalable C++ machine learning
library, meant to be a machine learning analog to LAPACK. It
aims to implement a wide array of machine learning methods
and function as a Swiss army knife for machine learning
researchers: MLPACK is from http://www.mlpack.org/: sources are included in the package.
Author: Qiang Kou, Ryan Curtin
Maintainer: Qiang Kou
DESCRIPTION | 9 +++++----
MD5 | 6 +++---
inst/doc/RcppMLPACK-intro.pdf |binary
src/mlpack/core/tree/cosine_tree/cosine_tree.cpp | 2 +-
4 files changed, 9 insertions(+), 8 deletions(-)
Title: Practical Numerical Math Functions
Diff between pracma versions 1.7.9 dated 2014-11-15 and 1.8.3 dated 2015-02-08
Description:
Functions from numerical analysis and linear algebra, numerical
optimization, differential equations, plus some special functions.
Uses Matlab function names where appropriate to simplify porting.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers
pracma-1.7.9/pracma/R/runstest.R |only
pracma-1.7.9/pracma/man/runstest.Rd |only
pracma-1.8.3/pracma/DESCRIPTION | 14 +++----
pracma-1.8.3/pracma/MD5 | 54 ++++++++++++++---------------
pracma-1.8.3/pracma/NEWS | 34 +++++++++++++-----
pracma-1.8.3/pracma/R/circlefit.R | 16 +++++---
pracma-1.8.3/pracma/R/hurst.R | 5 ++
pracma-1.8.3/pracma/R/sumalt.R |only
pracma-1.8.3/pracma/man/agmean.Rd | 16 ++++++++
pracma-1.8.3/pracma/man/cd.Rd | 1
pracma-1.8.3/pracma/man/circlefit.Rd | 13 ++++--
pracma-1.8.3/pracma/man/clear.Rd | 1
pracma-1.8.3/pracma/man/clenshaw_curtis.Rd | 4 +-
pracma-1.8.3/pracma/man/ellip.Rd | 2 -
pracma-1.8.3/pracma/man/eta.Rd | 2 -
pracma-1.8.3/pracma/man/fresnel.Rd | 2 -
pracma-1.8.3/pracma/man/gammainc.Rd | 2 -
pracma-1.8.3/pracma/man/gammaz.Rd | 2 -
pracma-1.8.3/pracma/man/hadamard.Rd | 2 -
pracma-1.8.3/pracma/man/hankel.Rd | 2 -
pracma-1.8.3/pracma/man/hilb.Rd | 2 -
pracma-1.8.3/pracma/man/lambertW.Rd | 2 -
pracma-1.8.3/pracma/man/moler.Rd | 2 -
pracma-1.8.3/pracma/man/nile.Rd | 5 --
pracma-1.8.3/pracma/man/pascal.Rd | 2 -
pracma-1.8.3/pracma/man/rosser.Rd | 2 -
pracma-1.8.3/pracma/man/sumalt.Rd |only
pracma-1.8.3/pracma/man/vander.Rd | 2 -
pracma-1.8.3/pracma/man/wilkinson.Rd | 2 -
pracma-1.8.3/pracma/man/zeta.Rd | 2 -
30 files changed, 119 insertions(+), 74 deletions(-)
Title: Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization
Diff between cec2005benchmark versions 1.0.3 dated 2013-03-20 and 1.0.4 dated 2015-02-08
More information about cec2005benchmark at CRAN
Description: This package is a wrapper for the C implementation of the 25 benchmark functions for the CEC 2005 Special Session on Real-Parameter Optimization. The original C code by Santosh Tiwari and related documentation are available at http://www.ntu.edu.sg/home/EPNSugan/index_files/CEC-05/CEC05.htm.
Author: Yasser Gonzalez-Fernandez [aut, cre],
Marta Soto [aut]
Maintainer: Yasser Gonzalez-Fernandez
DESCRIPTION | 25 ++++++++-----------
MD5 | 58 +++++++++++++++++++++++-----------------------
NEWS | 12 ++++++---
inst/CITATION | 27 ++++++++++-----------
man/cec2005benchmark.Rd | 9 +++----
man/cec2005benchmark1.Rd | 9 +++----
man/cec2005benchmark10.Rd | 9 +++----
man/cec2005benchmark11.Rd | 9 +++----
man/cec2005benchmark12.Rd | 9 +++----
man/cec2005benchmark13.Rd | 9 +++----
man/cec2005benchmark14.Rd | 9 +++----
man/cec2005benchmark15.Rd | 9 +++----
man/cec2005benchmark16.Rd | 9 +++----
man/cec2005benchmark17.Rd | 9 +++----
man/cec2005benchmark18.Rd | 9 +++----
man/cec2005benchmark19.Rd | 9 +++----
man/cec2005benchmark2.Rd | 9 +++----
man/cec2005benchmark20.Rd | 9 +++----
man/cec2005benchmark21.Rd | 9 +++----
man/cec2005benchmark22.Rd | 9 +++----
man/cec2005benchmark23.Rd | 9 +++----
man/cec2005benchmark24.Rd | 9 +++----
man/cec2005benchmark25.Rd | 9 +++----
man/cec2005benchmark3.Rd | 9 +++----
man/cec2005benchmark4.Rd | 9 +++----
man/cec2005benchmark5.Rd | 9 +++----
man/cec2005benchmark6.Rd | 9 +++----
man/cec2005benchmark7.Rd | 9 +++----
man/cec2005benchmark8.Rd | 11 ++++----
man/cec2005benchmark9.Rd | 9 +++----
30 files changed, 192 insertions(+), 166 deletions(-)
Permanent link