Title: Extensions of Exponential Random Graph Models
Diff between xergm versions 1.3 dated 2014-11-01 and 1.4.1 dated 2015-02-10
Description: Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), and Temporal Network Autocorrelation Models (TNAM).
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [aut],
Bruce A. Desmarais [aut]
Maintainer: Philip Leifeld
xergm-1.3/xergm/vignettes/boxplots1.pdf |only
xergm-1.3/xergm/vignettes/boxplots2.pdf |only
xergm-1.3/xergm/vignettes/coefs.pdf |only
xergm-1.3/xergm/vignettes/nw.pdf |only
xergm-1.3/xergm/vignettes/rocpr.pdf |only
xergm-1.4.1/xergm/DESCRIPTION | 30 +-
xergm-1.4.1/xergm/MD5 | 50 ++--
xergm-1.4.1/xergm/NAMESPACE | 10
xergm-1.4.1/xergm/R/RcppExports.R |only
xergm-1.4.1/xergm/R/btergm.R | 42 ++-
xergm-1.4.1/xergm/R/gof.R | 245 ++++++++++++++++++++---
xergm-1.4.1/xergm/R/preprocess.R | 51 ++++
xergm-1.4.1/xergm/R/tnam.R | 77 +++----
xergm-1.4.1/xergm/build/vignette.rds |binary
xergm-1.4.1/xergm/data/knecht.rda |binary
xergm-1.4.1/xergm/inst/CITATION | 3
xergm-1.4.1/xergm/inst/doc/btergm.R | 54 ++---
xergm-1.4.1/xergm/inst/doc/btergm.Rnw | 20 +
xergm-1.4.1/xergm/inst/doc/btergm.pdf |binary
xergm-1.4.1/xergm/man/btergm.Rd | 75 +++++--
xergm-1.4.1/xergm/man/gof.Rd | 63 ++++-
xergm-1.4.1/xergm/man/preprocess.Rd | 6
xergm-1.4.1/xergm/man/timecov.Rd |only
xergm-1.4.1/xergm/man/tnam.Rd | 6
xergm-1.4.1/xergm/man/xergm-package.Rd | 12 -
xergm-1.4.1/xergm/src |only
xergm-1.4.1/xergm/vignettes/btergm-boxplots1.pdf |only
xergm-1.4.1/xergm/vignettes/btergm-boxplots2.pdf |only
xergm-1.4.1/xergm/vignettes/btergm-coefs.pdf |only
xergm-1.4.1/xergm/vignettes/btergm-nw.pdf |only
xergm-1.4.1/xergm/vignettes/btergm-rocpr.pdf |only
xergm-1.4.1/xergm/vignettes/btergm.Rnw | 20 +
32 files changed, 551 insertions(+), 213 deletions(-)
Title: Multidimensional Iterative Proportional Fitting
Diff between mipfp versions 1.0 dated 2014-12-01 and 1.5 dated 2015-02-10
Description: An implementation of the iterative proportional fitting procedure for updating a N-dimensional array with respect to given target marginal distributions (which, in turn can be multi-dimensional).
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy
DESCRIPTION | 11 -
MD5 | 13 +
NAMESPACE | 1
R/ipfpMultiDim.R | 380 ++++++++++++++++++++++++++++++++++++---------------
man/Ipfp.Rd | 103 +++++++++----
man/IpfpCovar.Rd |only
man/array2vector.Rd |only
man/mipfp-package.Rd | 56 ++++---
man/vector2array.Rd |only
9 files changed, 392 insertions(+), 172 deletions(-)
Title: Lucid Printing of Floating Point Numbers
Diff between lucid versions 1.0 dated 2014-11-25 and 1.1 dated 2015-02-10
Description: Print vectors (and data frames) of floating point numbers using a non-scientific format optimized for human readers. Vectors of numbers are rounded using significant digits, aligned at the decimal point, and all zeros trailing the decimal point are dropped.
Author: Kevin Wright
Maintainer: Kevin Wright
lucid-1.0/lucid/inst/doc/lucid.R |only
lucid-1.0/lucid/inst/doc/lucid.Rnw |only
lucid-1.0/lucid/inst/doc/lucid.pdf |only
lucid-1.0/lucid/vignettes/figs |only
lucid-1.0/lucid/vignettes/lucid-concordance.tex |only
lucid-1.0/lucid/vignettes/lucid.Rnw |only
lucid-1.1/lucid/DESCRIPTION | 10 -
lucid-1.1/lucid/MD5 | 33 ++--
lucid-1.1/lucid/NEWS | 5
lucid-1.1/lucid/R/lucid.r | 105 +++++++++++----
lucid-1.1/lucid/R/vc.r | 29 ++--
lucid-1.1/lucid/README.md | 8 +
lucid-1.1/lucid/build/vignette.rds |binary
lucid-1.1/lucid/inst/doc/lucid_printing.R |only
lucid-1.1/lucid/inst/doc/lucid_printing.Rnw |only
lucid-1.1/lucid/inst/doc/lucid_printing.pdf |only
lucid-1.1/lucid/man/lucid.Rd | 38 +++--
lucid-1.1/lucid/man/vc.Rd | 3
lucid-1.1/lucid/vignettes/figure |only
lucid-1.1/lucid/vignettes/lucid.bib | 56 +++++++-
lucid-1.1/lucid/vignettes/lucid_printing-concordance.tex |only
lucid-1.1/lucid/vignettes/lucid_printing.Rnw |only
22 files changed, 212 insertions(+), 75 deletions(-)
Title: R Based Twitter Client
Diff between twitteR versions 1.1.7 dated 2013-07-09 and 1.1.8 dated 2015-02-10
Description: Provides an interface to the Twitter web API.
Author: Jeff Gentry
Maintainer: Jeff Gentry
twitteR-1.1.7/twitteR/inst/sweave |only
twitteR-1.1.7/twitteR/inst/vignette |only
twitteR-1.1.8/twitteR/DESCRIPTION | 20 +
twitteR-1.1.8/twitteR/MD5 | 66 +++---
twitteR-1.1.8/twitteR/NAMESPACE | 16 +
twitteR-1.1.8/twitteR/NEWS | 44 ++++
twitteR-1.1.8/twitteR/R/account.R | 28 ++
twitteR-1.1.8/twitteR/R/base.R | 5
twitteR-1.1.8/twitteR/R/comm.R | 191 ++++++++----------
twitteR-1.1.8/twitteR/R/convert.R | 22 ++
twitteR-1.1.8/twitteR/R/db.R |only
twitteR-1.1.8/twitteR/R/db_connections.R |only
twitteR-1.1.8/twitteR/R/db_search.R |only
twitteR-1.1.8/twitteR/R/db_utils.R |only
twitteR-1.1.8/twitteR/R/df_columns.R |only
twitteR-1.1.8/twitteR/R/dm.R | 6
twitteR-1.1.8/twitteR/R/followers.R | 20 +
twitteR-1.1.8/twitteR/R/oauth.R |only
twitteR-1.1.8/twitteR/R/search.R | 20 +
twitteR-1.1.8/twitteR/R/statuses.R | 132 ++++++++----
twitteR-1.1.8/twitteR/R/toys.R | 2
twitteR-1.1.8/twitteR/R/trends.R | 15 +
twitteR-1.1.8/twitteR/R/users.R | 51 +++-
twitteR-1.1.8/twitteR/R/utils.R | 84 ++++++-
twitteR-1.1.8/twitteR/R/zzz.R | 5
twitteR-1.1.8/twitteR/README.md | 14 +
twitteR-1.1.8/twitteR/inst/doc |only
twitteR-1.1.8/twitteR/inst/vignettes |only
twitteR-1.1.8/twitteR/man/getCurRateLimitInfo.Rd | 12 -
twitteR-1.1.8/twitteR/man/getUser.Rd | 2
twitteR-1.1.8/twitteR/man/get_latest_tweet_id.Rd |only
twitteR-1.1.8/twitteR/man/load_tweets_db.Rd |only
twitteR-1.1.8/twitteR/man/registerTwitterOAuth.Rd | 38 ---
twitteR-1.1.8/twitteR/man/register_db_backend.Rd |only
twitteR-1.1.8/twitteR/man/retweets.Rd |only
twitteR-1.1.8/twitteR/man/search.Rd | 45 +++-
twitteR-1.1.8/twitteR/man/search_twitter_and_store.Rd |only
twitteR-1.1.8/twitteR/man/setup_twitter_oauth.Rd |only
twitteR-1.1.8/twitteR/man/showStatus.Rd | 23 +-
twitteR-1.1.8/twitteR/man/strip_retweets.Rd |only
twitteR-1.1.8/twitteR/man/timelines.Rd | 9
twitteR-1.1.8/twitteR/man/updateStatus.Rd | 8
42 files changed, 577 insertions(+), 301 deletions(-)
Title: Web Application Framework for R
Diff between shiny versions 0.11 dated 2015-01-17 and 0.11.1 dated 2015-02-10
Description: Shiny makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/1.10.4/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang
DESCRIPTION | 16
MD5 | 114 +++---
NEWS | 36 ++
R/app.R | 45 +-
R/bootstrap.R | 180 +++++-----
R/jqueryui.R | 4
R/middleware.R | 2
R/reactives.R | 51 +-
R/run-url.R | 33 +
R/server.R | 95 +++--
R/shiny.R | 10
R/shinyui.R | 8
R/shinywrappers.R | 35 +
R/update-input.R | 49 +-
R/utils.R | 16
inst/examples/04_mpg/server.R | 2
inst/tests/test-bootstrap.r | 4
inst/tests/test-utils.R | 12
inst/www/shared/ionrangeslider/css/ion.rangeSlider.css | 11
inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinFlat.css | 4
inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinHTML5.css | 4
inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinModern.css | 4
inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinNice.css | 4
inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinSimple.css | 4
inst/www/shared/ionrangeslider/js/ion.rangeSlider.js | 157 ++++----
inst/www/shared/ionrangeslider/js/ion.rangeSlider.min.js | 130 +++----
inst/www/shared/shiny.css | 12
inst/www/shared/shiny.js | 64 ++-
inst/www/shared/shiny.min.js | 6
inst/www/shared/shiny.min.js.map | 2
man/absolutePanel.Rd | 4
man/bootstrapPage.Rd | 10
man/checkboxGroupInput.Rd | 4
man/checkboxInput.Rd | 4
man/dateInput.Rd | 4
man/dateRangeInput.Rd | 4
man/fileInput.Rd | 4
man/htmlOutput.Rd | 20 -
man/navbarPage.Rd | 2
man/numericInput.Rd | 6
man/observeEvent.Rd | 51 +-
man/parseQueryString.Rd | 2
man/passwordInput.Rd | 6
man/plotOutput.Rd | 4
man/radioButtons.Rd | 4
man/renderDataTable.Rd | 35 +
man/runApp.Rd | 46 +-
man/runExample.Rd | 15
man/runUrl.Rd | 33 +
man/selectInput.Rd | 22 -
man/shinyApp.Rd | 45 +-
man/shinyServer.Rd | 21 +
man/shinyUI.Rd | 8
man/sliderInput.Rd | 6
man/tabPanel.Rd | 2
man/tableOutput.Rd | 51 +-
man/textInput.Rd | 6
man/updateSliderInput.Rd | 49 +-
58 files changed, 896 insertions(+), 686 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
Diff between phenology versions 4.0 dated 2014-10-05 and 4.0.4 dated 2015-02-10
Description: Functions to fit and test the phenology of species based on counts. The package includes also several useful more general functions.
Author: Marc Girondot
Maintainer: Marc Girondot
DESCRIPTION | 11 +--
MD5 | 148 +++++++++++++++++++++----------------------
NAMESPACE | 3
NEWS | 8 ++
R/MHalgoGen.R | 34 ++++++++-
R/add_phenology.R | 14 +++-
R/barplot_errbar.R | 1
R/format_par.R | 53 ++++-----------
R/insidesearch.R |only
R/phenology-package.R | 6 -
R/plot.phenology.R | 1
R/plot.phenologymap.R | 25 +------
R/plot_errbar.R | 3
R/print.phenologyout.R | 6 +
R/read_phenology.R | 46 +++++++++----
man/BE_to_LBLE.Rd | 3
man/ChangeCoordinate.Rd | 3
man/Gratiot.Rd | 3
man/LBLE_to_BE.Rd | 3
man/LBLE_to_L.Rd | 3
man/L_to_LBLE.Rd | 3
man/MinBMinE_to_Min.Rd | 3
man/ScalePreviousPlot.Rd | 3
man/adapt_parameters.Rd | 3
man/add_SD.Rd | 3
man/add_phenology.Rd | 3
man/as.mcmc.mcmcComposite.Rd | 3
man/as.par.mcmcComposite.Rd | 3
man/asc.Rd | 3
man/barplot_errbar.Rd | 3
man/chr.Rd | 3
man/clean.knitr.Rd | 3
man/compare_AIC.Rd | 3
man/compassRose2.Rd | 3
man/convert.tz.Rd | 3
man/extract_result.Rd | 3
man/fit_phenology.Rd | 3
man/getTide.Rd | 3
man/growlnotify.Rd | 3
man/ind_long_lat.Rd | 3
man/insidesearch.Rd |only
man/likelihood_phenology.Rd | 3
man/local.search.Rd | 3
man/logLik.phenology.Rd | 3
man/map.scale2.Rd | 3
man/map_Gratiot.Rd | 3
man/map_phenology.Rd | 3
man/moon_phase.Rd | 3
man/par_init.Rd | 3
man/phenology-package.Rd | 9 +-
man/phenology.Rd | 3
man/phenology_MHmcmc.Rd | 3
man/phenology_MHmcmc_p.Rd | 3
man/plot.mcmcComposite.Rd | 3
man/plot.phenology.Rd | 3
man/plot.phenologymap.Rd | 7 --
man/plot_add.Rd | 3
man/plot_delta.Rd | 3
man/plot_errbar.Rd | 3
man/plot_phi.Rd | 3
man/print.phenology.Rd | 3
man/print.phenologymap.Rd | 3
man/print.phenologyout.Rd | 3
man/read_folder.Rd | 3
man/remove_site.Rd | 3
man/result_Gratiot.Rd | 3
man/result_Gratiot1.Rd | 3
man/result_Gratiot2.Rd | 3
man/result_Gratiot_Flat.Rd | 3
man/result_Gratiot_mcmc.Rd | 3
man/shift_sinusoid.Rd | 3
man/summary.mcmcComposite.Rd | 3
man/summary.phenology.Rd | 3
man/summary.phenologymap.Rd | 3
man/summary.phenologyout.Rd | 3
man/toggle_Min_PMin.Rd | 3
76 files changed, 317 insertions(+), 232 deletions(-)
Title: Multiple Imputation for Multivariate Panel or Clustered Data
Diff between pan versions 0.9 dated 2013-09-27 and 1.3 dated 2015-02-10
Description: Multiple imputation for multivariate panel or clustered data.
Author: Original by Joseph L. Schafer
Maintainer: Jing hua Zhao
pan-0.9/pan/.Rinstignore |only
pan-0.9/pan/INDEX |only
pan-0.9/pan/LICENSE |only
pan-0.9/pan/inst/doc/pan-tr.R |only
pan-1.3/pan/ChangeLog | 14 ++++++++++++++
pan-1.3/pan/DESCRIPTION | 16 ++++++++--------
pan-1.3/pan/MD5 | 20 +++++++++-----------
pan-1.3/pan/build |only
pan-1.3/pan/inst/doc/pan-tr.Rnw | 6 +++---
pan-1.3/pan/inst/doc/pan-tr.pdf |binary
pan-1.3/pan/man/ecme.Rd | 9 ++++++---
pan-1.3/pan/man/pan.Rd | 9 ++++++---
pan-1.3/pan/src/pan.f | 4 ++--
pan-1.3/pan/vignettes/pan-tr.Rnw | 6 +++---
14 files changed, 51 insertions(+), 33 deletions(-)
Title: Optimal k-Means Clustering for One-Dimensional Data
Diff between Ckmeans.1d.dp versions 3.3.0 dated 2015-02-09 and 3.3.1 dated 2015-02-10
Description: A dynamic programming algorithm for optimal one-dimensional k-means clustering. The algorithm minimizes the sum of squares of within-cluster distances. As an alternative to the standard heuristic k-means algorithm, this algorithm guarantees optimality and repeatability.
Author: Joe Song and Haizhou Wang
Maintainer: Joe Song
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 5 +++++
src/Ckmeans.1d.dp.cpp | 2 +-
4 files changed, 13 insertions(+), 8 deletions(-)
Title: Markov-Switching, Bayesian, Vector Autoregression Models
Diff between MSBVAR versions 0.9-1 dated 2014-07-25 and 0.9-2 dated 2015-02-10
Description: Provides methods for estimating frequentist and
Bayesian Vector Autoregression (VAR) models and Markov-switching
Bayesian VAR (MSBVAR). Functions for reduced
form and structural VAR models are also available. Includes
methods for the generating posterior inferences for these models,
forecasts, impulse responses (using likelihood-based error bands),
and forecast error decompositions. Also includes utility functions
for plotting forecasts and impulse responses, and generating draws
from Wishart and singular multivariate normal densities. Current
version includes functionality to build and evaluate models with
Markov switching.
Author: Patrick Brandt [aut, cre],
W. Ryan Davis [ctb]
Maintainer: Patrick Brandt
DESCRIPTION | 12 ++++++------
LICENSE | 4 ++--
MD5 | 25 +++++++++++++------------
NAMESPACE | 6 ++++++
R/zzz.R | 2 +-
README | 11 +++++++----
man/BCFdata.Rd | 12 ++++++------
man/IsraelPalestineConflict.Rd | 2 +-
man/hc.forecast.Rd | 2 +-
man/uc.forecast.Rd | 2 +-
src/FFBS.f | 8 ++++----
src/MSBVARfun.cpp | 3 ++-
src/utils.f | 38 ++++++++++++++++++++++++++++----------
src/wrapper.c |only
14 files changed, 78 insertions(+), 49 deletions(-)
Title: Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Diff between heritability versions 1.0 dated 2014-11-07 and 1.1 dated 2015-02-10
Description: Implements marker-based estimation of heritability when observations on genetically identical replicates are available. These can be either observations on individual plants or plot-level data in a field trial. Heritability can then be estimated using a mixed model for the individual plant or plot data. For comparison, also mixed-model based estimation using genotypic means and estimation of repeatability with ANOVA are implemented. For illustration the package contains several datasets for the model species Arabidopsis thaliana.
Author: Willem Kruijer, with a contribution from Ian White (the internal function pin). Contains data collected by Padraic Flood and Rik Kooke.
Maintainer: Willem Kruijer
DESCRIPTION | 14 +++++++-------
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 1 +
R/AI_algorithm.R | 24 ++++++++++++------------
R/AI_algorithm_weights.r | 26 +++++++++++++-------------
R/marker_h2_means.r | 21 +++++++++++++++++++--
man/BT_LW_H.Rd | 4 ++--
man/K_arabidopsis.Rd | 3 ---
man/R_matrix.Rd | 4 ++--
man/floweringTime.Rd | 4 ++--
man/heritability-package.Rd | 6 +++---
man/leafArea.Rd | 4 ++--
man/marker_h2.Rd | 8 ++++----
man/marker_h2_means.Rd | 14 +++++++-------
man/means_floweringTime.Rd | 4 ++--
man/repeatability.Rd | 7 +++----
16 files changed, 94 insertions(+), 80 deletions(-)
Title: Time Series Analysis and Computational Finance
Diff between tseries versions 0.10-32 dated 2013-05-13 and 0.10-33 dated 2015-02-10
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik
ChangeLog | 7 ++++++
DESCRIPTION | 26 ++++++++++++----------
MD5 | 22 +++++++++----------
R/finance.R | 60 ++++++++++++++++++++--------------------------------
data/NelPlo.rda |binary
data/USeconomic.rda |binary
data/bev.rda |binary
data/camp.rda |binary
data/ice.river.rda |binary
data/nino.rda |binary
data/tcm.rda |binary
data/tcmd.rda |binary
12 files changed, 56 insertions(+), 59 deletions(-)
Title: Imperialist Competitive Algorithm
Diff between ICAFF versions 1.0 dated 2015-02-01 and 1.0.1 dated 2015-02-10
Description: Imperialist Competitive Algorithm (ICA)
Author: Farimah Houshmand, Farzad Eskandari Ph.D.
Maintainer: Farimah Houshmand
ICAFF-1.0.1/ICAFF/DESCRIPTION | 30 +
ICAFF-1.0.1/ICAFF/MD5 | 17 -
ICAFF-1.0.1/ICAFF/NAMESPACE | 6
ICAFF-1.0.1/ICAFF/R/ICA.R | 544 ++++++++++++++---------------------
ICAFF-1.0.1/ICAFF/R/ICAFF-internal.R | 251 ++++++++--------
ICAFF-1.0.1/ICAFF/R/coef.ICA.R |only
ICAFF-1.0.1/ICAFF/R/plot.ICA.R |only
ICAFF-1.0.1/ICAFF/R/print.ICA.R |only
ICAFF-1.0.1/ICAFF/R/summary.ICA.R |only
ICAFF-1.0.1/ICAFF/man/ICA.Rd | 184 +++++++----
ICAFF-1.0.1/ICAFF/man/plot.ICA.Rd |only
ICAFF-1.0/ICAFF/R/cost.R |only
ICAFF-1.0/ICAFF/man/ICAFF-package.Rd |only
13 files changed, 497 insertions(+), 535 deletions(-)
Title: Soft Clustering Algorithms
Diff between SoftClustering versions 0.14.02 dated 2014-02-17 and 1.1502 dated 2015-02-10
More information about SoftClustering at CRAN
Description: It contains soft clustering algorithms, in particular approaches derived from rough set theory: Lingras & West original rough k-means, Peters' refined rough k-means, and PI rough k-means. It also contains classic k-means and a corresponding illustrative demo.
Author: G. Peters (Ed.)
Maintainer: G. Peters
SoftClustering-0.14.02/SoftClustering/R/RoughClustering_01402.r |only
SoftClustering-0.14.02/SoftClustering/data/DemoDataC2D2a.txt.gz |only
SoftClustering-1.1502/SoftClustering/DESCRIPTION | 9 -
SoftClustering-1.1502/SoftClustering/MD5 | 39 +++--
SoftClustering-1.1502/SoftClustering/NAMESPACE | 4
SoftClustering-1.1502/SoftClustering/R/HardkMeansDemo.r |only
SoftClustering-1.1502/SoftClustering/R/RoughClustering.r |only
SoftClustering-1.1502/SoftClustering/data/DemoDataC2D2a.txt |only
SoftClustering-1.1502/SoftClustering/data/initMeansC2D2a.txt |only
SoftClustering-1.1502/SoftClustering/data/initMeansC3D2a.txt |only
SoftClustering-1.1502/SoftClustering/data/initMeansC4D2a.txt |only
SoftClustering-1.1502/SoftClustering/data/initMeansC5D2a.txt |only
SoftClustering-1.1502/SoftClustering/man/DemoDataC2D2a.Rd | 2
SoftClustering-1.1502/SoftClustering/man/HardKMeans.Rd | 36 +---
SoftClustering-1.1502/SoftClustering/man/HardKMeansDemo.Rd |only
SoftClustering-1.1502/SoftClustering/man/RoughKMeans_LW.Rd | 72 +++------
SoftClustering-1.1502/SoftClustering/man/RoughKMeans_PE.Rd | 57 ++-----
SoftClustering-1.1502/SoftClustering/man/RoughKMeans_PI.Rd | 52 ++----
SoftClustering-1.1502/SoftClustering/man/RoughKMeans_SHELL.Rd | 77 +++-------
SoftClustering-1.1502/SoftClustering/man/createLowerMShipMatrix.Rd | 7
SoftClustering-1.1502/SoftClustering/man/datatypeInteger.Rd |only
SoftClustering-1.1502/SoftClustering/man/initMeansC2D2a.Rd |only
SoftClustering-1.1502/SoftClustering/man/initMeansC3D2a.Rd |only
SoftClustering-1.1502/SoftClustering/man/initMeansC4D2a.Rd |only
SoftClustering-1.1502/SoftClustering/man/initMeansC5D2a.Rd |only
SoftClustering-1.1502/SoftClustering/man/initializeMeansMatrix.Rd | 14 -
SoftClustering-1.1502/SoftClustering/man/normalizeMatrix.Rd | 14 -
SoftClustering-1.1502/SoftClustering/man/plotRoughKMeans.Rd | 23 +-
28 files changed, 154 insertions(+), 252 deletions(-)
Permanent link
Title: R Individual Specialization (RInSp)
Diff between RInSp versions 1.1 dated 2015-02-04 and 1.2 dated 2015-02-10
Description: Functions to calculate several ecological indices of individual and population niche width
(Araujo's E, clustering and pairwise similarity among individuals, IS, Petraitis' W, and Roughgarden's
WIC/TNW) to assess individual specialization based on data of resource use. Resource use can be
quantified by counts of categories, measures of mass/lenght or proportions. Monte Carlo resampling
procedures are available for hypothesis testing against multinomial null models.
Author: Dr. Nicola Zaccarelli, Dr. Giorgio Mancinelli, and Prof. Dan Bolnick
Maintainer: Dr. Nicola Zaccarelli
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
man/RInSp-package.Rd | 6 +++---
src/Emc.c | 7 +++----
src/MCprocedure.c | 12 ++++++------
src/PSicalc.c | 14 +++++++-------
src/WTcMC.c | 17 +++++++++--------
src/WTdMC.c | 11 ++++++-----
8 files changed, 45 insertions(+), 44 deletions(-)
Title: Rough - Enhanced - Bayesian Finite Mixture Modeling
Diff between rebmix versions 2.6.2 dated 2014-09-05 and 2.7.0 dated 2015-02-10
Description: R functions for random univariate and multivariate finite mixture generation, number of components, component weights and component parameters estimation, printing and plotting of finite mixtures, bootstrapping and class membership prediction. Variables can be either continuous or discrete, may follow normal, lognormal, Weibull, gamma, binomial, Poisson or Dirac parametric families and should be independent within components.
Author: Marko Nagode [aut, cre]
Maintainer: Marko Nagode
rebmix-2.6.2/rebmix/R/boot.R |only
rebmix-2.6.2/rebmix/R/predict.list.R |only
rebmix-2.6.2/rebmix/man/boot.Rd |only
rebmix-2.6.2/rebmix/man/predict.list.Rd |only
rebmix-2.7.0/rebmix/DESCRIPTION | 10
rebmix-2.7.0/rebmix/MD5 | 120 +++---
rebmix-2.7.0/rebmix/NAMESPACE | 56 ---
rebmix-2.7.0/rebmix/R/IC.R | 188 +---------
rebmix-2.7.0/rebmix/R/RCLSMIX.R |only
rebmix-2.7.0/rebmix/R/REBMIX.R | 108 +++---
rebmix-2.7.0/rebmix/R/RNGMIX.R | 2
rebmix-2.7.0/rebmix/R/boot.REBMIX.R |only
rebmix-2.7.0/rebmix/R/defaults.R | 2
rebmix-2.7.0/rebmix/R/densKNearestNeighbour.x.R | 17
rebmix-2.7.0/rebmix/R/densKNearestNeighbour.xy.R | 20 -
rebmix-2.7.0/rebmix/R/densParzenWindow.x.R | 19 -
rebmix-2.7.0/rebmix/R/densParzenWindow.xy.R | 18 -
rebmix-2.7.0/rebmix/R/dist.x.R | 20 -
rebmix-2.7.0/rebmix/R/dist.xy.R | 24 +
rebmix-2.7.0/rebmix/R/kseq.R | 8
rebmix-2.7.0/rebmix/R/plot.REBMIX.R | 123 ++++--
rebmix-2.7.0/rebmix/build/vignette.rds |binary
rebmix-2.7.0/rebmix/data/adult.rda |binary
rebmix-2.7.0/rebmix/data/galaxy.rda |binary
rebmix-2.7.0/rebmix/data/truck.rda |binary
rebmix-2.7.0/rebmix/data/weibull.rda |binary
rebmix-2.7.0/rebmix/data/weibullnormal.rda |binary
rebmix-2.7.0/rebmix/data/wine.rda |binary
rebmix-2.7.0/rebmix/demo/rebmix.truck.R | 2
rebmix-2.7.0/rebmix/demo/rebmix.weibullnormal.R | 2
rebmix-2.7.0/rebmix/inst/NEWS.Rd | 22 +
rebmix-2.7.0/rebmix/inst/doc/rebmix.Rnw | 16
rebmix-2.7.0/rebmix/inst/doc/rebmix.pdf |binary
rebmix-2.7.0/rebmix/man/AIC.Rd | 12
rebmix-2.7.0/rebmix/man/AWE.Rd | 4
rebmix-2.7.0/rebmix/man/BIC.Rd | 4
rebmix-2.7.0/rebmix/man/CLC.Rd | 4
rebmix-2.7.0/rebmix/man/HQC.Rd | 4
rebmix-2.7.0/rebmix/man/ICL.Rd | 4
rebmix-2.7.0/rebmix/man/ICLBIC.Rd | 4
rebmix-2.7.0/rebmix/man/MDL.Rd | 9
rebmix-2.7.0/rebmix/man/PC.Rd | 4
rebmix-2.7.0/rebmix/man/PRD.Rd | 4
rebmix-2.7.0/rebmix/man/RCLSMIX.Rd |only
rebmix-2.7.0/rebmix/man/REBMIX.Rd | 52 +-
rebmix-2.7.0/rebmix/man/SSE.Rd | 4
rebmix-2.7.0/rebmix/man/boot.REBMIX.Rd |only
rebmix-2.7.0/rebmix/man/coef.REBMIX.Rd | 3
rebmix-2.7.0/rebmix/man/dfmix.Rd | 1
rebmix-2.7.0/rebmix/man/kseq.Rd | 2
rebmix-2.7.0/rebmix/man/logL.Rd | 4
rebmix-2.7.0/rebmix/man/pfmix.Rd | 1
rebmix-2.7.0/rebmix/man/plot.REBMIX.Rd | 9
rebmix-2.7.0/rebmix/man/print.REBMIX.Rd | 5
rebmix-2.7.0/rebmix/man/print.RNGMIX.Rd | 1
rebmix-2.7.0/rebmix/man/print.boot.REBMIX.Rd | 3
rebmix-2.7.0/rebmix/man/summary.REBMIX.Rd | 3
rebmix-2.7.0/rebmix/man/summary.boot.REBMIX.Rd | 3
rebmix-2.7.0/rebmix/src/Makevars | 2
rebmix-2.7.0/rebmix/src/Rrebmix.c | 58 +--
rebmix-2.7.0/rebmix/src/rebmixf.c | 408 +++++++++++++++--------
rebmix-2.7.0/rebmix/src/rebmixf.h | 38 +-
rebmix-2.7.0/rebmix/src/rngmixf.c | 2
rebmix-2.7.0/rebmix/vignettes/algorithm.pdf |binary
rebmix-2.7.0/rebmix/vignettes/rebmix.Rnw | 16
65 files changed, 783 insertions(+), 662 deletions(-)
Title: Linear Mixed Models
Diff between lmm versions 0.9 dated 2013-12-10 and 1.0 dated 2015-02-10
Description: Some improved procedures for linear mixed models.
Author: Original by Joseph L. Schafer
Maintainer: Jing hua Zhao
lmm-0.9/lmm/.Rinstignore |only
lmm-0.9/lmm/LICENSE |only
lmm-0.9/lmm/inst/doc/lmm-tr.R |only
lmm-1.0/lmm/ChangeLog | 8 +++++++-
lmm-1.0/lmm/DESCRIPTION | 16 ++++++++--------
lmm-1.0/lmm/MD5 | 11 +++++------
lmm-1.0/lmm/build |only
lmm-1.0/lmm/inst/doc/lmm-tr.pdf |binary
lmm-1.0/lmm/src/lmm.f | 6 +++---
9 files changed, 23 insertions(+), 18 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 1.8-1441 dated 2014-12-25 and 2.0-1570 dated 2015-02-10
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
DESCRIPTION | 14
MD5 | 130 +-
NAMESPACE | 12
NEWS |only
R/bccorr.R | 277 ++++--
R/btrap.R | 21
R/compfactor.R | 1
R/condfstat.R |only
R/felm.R | 1103 +++++++++++--------------
R/felm.old.R |only
R/generics.R |only
R/getfe.R | 4
R/kaczmarz.R | 40
R/oldfelm.R | 1027 ++++++++++++++++++++---
R/utils.R | 245 -----
R/waldtest.R |only
build/autoconf/install-sh | 668 ++++++++++-----
configure | 20
configure.ac | 2
exec/lfescript | 111 +-
inst/CITATION | 13
inst/doc/CHANGELOG | 33
inst/doc/identification.R | 54 -
inst/doc/identification.Rnw | 2
inst/doc/identification.pdf |binary
inst/doc/index.html | 60 -
inst/doc/lfeguide.txt | 40
inst/doc/lfehow.R | 20
inst/doc/lfehow.pdf |binary
inst/doc/speed.R | 10
inst/doc/speed.pdf |binary
man/bccorr.Rd | 4
man/btrap.Rd | 6
man/condfstat.Rd |only
man/demeanlist.Rd | 3
man/felm.Rd | 104 +-
man/fevcov.Rd | 58 -
man/getfe.Rd | 7
man/is.estimable.Rd | 7
man/kaczmarz.Rd | 3
man/lfe-package.Rd | 31
man/summary.felm.Rd | 43
man/varvars.Rd | 3
man/waldtest.Rd |only
src/Makevars.in | 2
src/Makevars.win | 3
src/demean.c |only
src/factor.c |only
src/kaczmarz.c |only
src/lfe.c | 1888 -------------------------------------------
src/lfe.h |only
src/utils.c |only
tests/anomalies.R |only
tests/anomalies.Rout.save |only
tests/bctest.Rout.save | 6
tests/cluster.R | 6
tests/cluster.Rout.save | 72 -
tests/comparelm.Rout.save | 13
tests/degenerate.Rout.save | 17
tests/efcheck.Rout.save | 10
tests/fourfac.Rout.save | 10
tests/interact.Rout.save | 821 +++++++++---------
tests/ivtest.R | 26
tests/ivtest.Rout.save | 144 +--
tests/lfetest.Rout.save | 6
tests/mlhs.R |only
tests/mlhs.Rout.save |only
tests/multiway.R | 14
tests/multiway.Rout.save | 92 --
tests/naomit.Rout.save | 9
tests/nonest.Rout.save | 10
tests/onefac.Rout.save | 6
tests/verify.Rout.save | 13
vignettes/identification.Rnw | 2
74 files changed, 3175 insertions(+), 4171 deletions(-)
Title: Numerical Calibration of Proxy-Climate Relationships
Diff between treeclim versions 1.0.10 dated 2015-01-19 and 1.0.11 dated 2015-02-10
Description: Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology
Author: Christian Zang [aut, cre, cph, trl],
Franco Biondi [ctb, cph]
Maintainer: Christian Zang
DESCRIPTION | 8
MD5 | 37 +--
R/exclude_from.R | 94 ++++----
R/skills.R | 544 +++++++++++++++++++++++++-------------------------
R/zzz.R | 38 +--
README.md |only
inst/Changelog | 3
man/dcc.Rd | 478 +++++++++++++++++++++----------------------
man/g_test.Rd | 128 +++++------
man/init_boot_data.Rd | 52 ++--
man/norw015.Rd | 56 ++---
man/norway_prec.Rd | 48 ++--
man/norway_temp.Rd | 48 ++--
man/seascorr.Rd | 278 ++++++++++++-------------
man/skills.Rd | 212 +++++++++----------
man/spain_prec.Rd | 48 ++--
man/spain_temp.Rd | 48 ++--
man/tc_correlation.Rd | 52 ++--
man/tc_mfunc.Rd | 76 +++---
man/tc_response.Rd | 50 ++--
20 files changed, 1151 insertions(+), 1147 deletions(-)
Title: Fitting Structural Equation Mixture Models
Diff between nlsem versions 0.1 dated 2014-12-19 and 0.2 dated 2015-02-10
Description: Estimation of structural equation models with nonlinear effects
and underlying nonnormal distributions.
Author: Nora Umbach [aut, cre],
Katharina Naumann [aut],
David Hoppe [aut],
Holger Brandt [aut],
Augustin Kelava [ctb],
Bernhard Schmitz [ctb]
Maintainer: Nora Umbach
DESCRIPTION | 9 +-
MD5 | 38 +++++------
NAMESPACE | 1
R/em.R | 50 ++++++++-------
R/lms.R | 4 -
R/model.R | 38 ++++++++---
R/s3generics.R | 65 ++++++++++++--------
R/semm.R | 15 ++--
man/anova.Rd | 2
man/as.data.frame.Rd | 4 -
man/count_free_parameters.Rd | 4 -
man/create_sem.Rd | 9 +-
man/em.Rd | 139 ++++++++-----------------------------------
man/fill_model.Rd | 8 +-
man/nlsem-package.Rd | 52 ++++++++--------
man/simulate.Rd | 17 ++---
man/specify_sem.Rd | 32 ++++-----
man/summary.Rd | 15 ----
tests/tests_for_model.R | 17 +----
tests/tests_for_semm.R | 42 ------------
20 files changed, 229 insertions(+), 332 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Diff between asbio versions 1.1-1 dated 2014-09-06 and 1.1-5 dated 2015-02-10
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL.
Author: Ken Aho
Maintainer: Ken Aho
DESCRIPTION | 12 -
MD5 | 72 +++++------
NAMESPACE | 19 ++-
R/Bayes.disc.r | 5
R/Venn.R | 10 -
R/anm.ExpDesign.r | 6
R/bplot.r | 4
R/ci.prat.ak.R | 309 +++++++++++++++++++++++++++++--------------------
R/ci.prat.r | 4
R/huber.NR.R | 2
R/loess.surf.R | 3
R/loglik.norm.plot.r | 2
R/one.sample.t.R | 21 ++-
R/one.sample.z.R | 11 +
R/pairw.anova.R | 2
R/qq.Plot.R | 6
R/r.bw.R | 2
R/r.dist.r | 4
R/samp.dist.snap.tck.r | 2
R/samp.dist.tck.r | 2
R/see.regression.tck.r | 12 -
R/see.smooth.tck.r | 4
R/shade.r | 8 +
build/vignette.rds |binary
man/anm.loglik.rd | 2
man/bvn.plot.rd | 2
man/ci.prat.ak.Rd | 5
man/ci.prat.rd | 2
man/heart.rd | 4
man/huber.NR.Rd | 4
man/huber.mu.rd | 4
man/huber.one.step.rd | 4
man/one.sample.t.rd | 6
man/one.sample.z.Rd | 7 -
man/paik.rd | 2
man/r.dist.rd | 4
man/shade.norm.Rd | 5
37 files changed, 339 insertions(+), 234 deletions(-)