Wed, 18 Feb 2015

New package rjade with initial version 0.1
Package: rjade
Type: Package
Title: A Clean, Whitespace-Sensitive Template Language for Writing HTML
Version: 0.1
Date: 2015-02-17
Author: Jeroen Ooms, Forbes Lindesay
Maintainer: Jeroen Ooms
Description: Jade is a high performance template engine heavily influenced by Haml and implemented with JavaScript for node and browsers.
License: MIT + file LICENSE
URL: https://github.com/jeroenooms/rjade https://www.npmjs.com/package/jade
BugReports: https://github.com/jeroenooms/rjade/issues
VignetteBuilder: knitr
Imports: V8 (>= 0.5)
Suggests: knitr
Packaged: 2015-02-18 21:15:43 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 23:38:36

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New package lbfgsb3 with initial version 2015-2.13
Package: lbfgsb3
Type: Package
Title: Limited Memory BFGS Minimizer with Bounds on Parameters
Version: 2015-2.13
Date: 2015-02-13
Authors@R: c( person(given = c("John", "C"), family = "Nash", role = c("aut", "cre"), email = "nashjc@uottawa.ca"), person(given = "Ciyou", family = "Zhu", role = "aut"), person(given = "Richard", family = "Byrd", role = "aut"), person(given = "Jorge", family = "Nocedal", role = "aut"), person(given = c("Jose", "Luis"), family = "Morales", role = "aut"))
Maintainer: John C Nash
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0 (2011) limited memory BFGS minimizer with bounds on parameters.
License: GPL-2
Depends: R (>= 2.15.0), numDeriv
Packaged: 2015-02-16 20:01:08 UTC; john
Author: John C Nash [aut, cre], Ciyou Zhu [aut], Richard Byrd [aut], Jorge Nocedal [aut], Jose Luis Morales [aut]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-18 23:34:54

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New package git2r with initial version 0.6
Package: git2r
Title: Provides Access to Git Repositories
Description: Interface to the libgit2 library, which is a pure C implementation of the Git core methods. Provides access to Git repositories to extract data and running some basic git commands.
Version: 0.6
Date: 2015-02-18
License: GPL-2
Copyright: See COPYRIGHTS file.
URL: https://github.com/ropensci/git2r
BugReports: https://github.com/ropensci/git2r/issues
Maintainer: Stefan Widgren
Author: See AUTHORS file.
Depends: R (>= 3.0.2), methods
Type: Package
LazyData: true
Biarch: true
NeedsCompilation: yes
SystemRequirements: zlib headers and library. While the package provides git functionality without the need for dependencies, it can make use of a few libraries to add to it: OpenSSL (non-Windows) to talk over HTTPS and provide the SHA-1 functions. LibSSH2 to enable the SSH transport. iconv (OSX) to handle the HFS+ path encoding peculiarities.
Collate: 'S4_classes.r' 'blame.r' 'blob.r' 'branch.r' 'checkout.r' 'commit.r' 'config.r' 'contributions.r' 'credential.r' 'diff.r' 'fetch.r' 'git2r.r' 'index.r' 'libgit2.r' 'merge.r' 'note.r' 'odb.r' 'pull.r' 'push.r' 'reference.r' 'reflog.r' 'remote.r' 'repository.r' 'reset.r' 'signature.r' 'stash.r' 'status.r' 'tag.r' 'time.r' 'tree.r' 'when.r'
Packaged: 2015-02-18 19:11:20 UTC; stefan
Repository: CRAN
Date/Publication: 2015-02-19 00:11:37

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New package fgpt with initial version 2.2
Package: fgpt
Type: Package
Title: Floating Grid Permutation Technique
Version: 2.2
Date: 2014-08-09
Author: Reinder Radersma & Ben Sheldon
Maintainer: Reinder Radersma
Description: A permutation technique to explore and control for spatial autocorrelation. This package contains low level functions for performing permutations and calculating statistics as well as higher level functions. Higher level functions are an easy to use function for performing spatially restricted permutation tests and summarize and plot results.
VignetteBuilder: knitr
Suggests: knitr
License: GPL
Repository: CRAN
Repository/R-Forge/Project: fgm
Repository/R-Forge/Revision: 45
Repository/R-Forge/DateTimeStamp: 2015-02-18 20:42:27
Date/Publication: 2015-02-19 00:10:08
Packaged: 2015-02-18 21:07:24 UTC; rforge
Depends: R (>= 2.10)
NeedsCompilation: no

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Package zoib updated to version 1.2 with previous version 1.1 dated 2015-02-01

Title: Bayesian Inference for Beta Regression and Zero/One Inflated Beta Regression
Description: Fits beta regression and zero/one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu with contributions from Yunchuan Kong
Maintainer: Fang Liu

Diff between zoib versions 1.1 dated 2015-02-01 and 1.2 dated 2015-02-18

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 data/AlcoholUse.rda    |binary
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 tests/test1.R          |    4 -
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 47 files changed, 288 insertions(+), 366 deletions(-)

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Package oaxaca updated to version 0.1.2 with previous version 0.1 dated 2014-11-20

Title: Blinder-Oaxaca Decomposition
Description: An implementation of the Blinder-Oaxaca decomposition for linear regression models.
Author: Marek Hlavac
Maintainer: Marek Hlavac

Diff between oaxaca versions 0.1 dated 2014-11-20 and 0.1.2 dated 2015-02-18

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 17 files changed, 82 insertions(+), 86 deletions(-)

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Package clusterGeneration updated to version 1.3.4 with previous version 1.3.1 dated 2013-01-08

Title: Random Cluster Generation (with Specified Degree of Separation)
Description: We developed the clusterGeneration package to provide functions for generating random clusters, generating random covariance/correlation matrices, calculating a separation index (data and population version) for pairs of clusters or cluster distributions, and 1-D and 2-D projection plots to visualize clusters. The package also contains a function to generate random clusters based on factorial designs with factors such as degree of separation, number of clusters, number of variables, number of noisy variables.
Author: Weiliang Qiu , Harry Joe .
Maintainer: Weiliang Qiu

Diff between clusterGeneration versions 1.3.1 dated 2013-01-08 and 1.3.4 dated 2015-02-18

 DESCRIPTION    |   16 +++++++++-------
 MD5            |    6 +++---
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 4 files changed, 21 insertions(+), 12 deletions(-)

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Package clues updated to version 0.5.6 with previous version 0.5-4 dated 2014-05-21

Title: Clustering Method Based on Local Shrinking
Description: We developed the clues R package to provide functions for automatically estimating the number of clusters and getting the final cluster partition without any input parameter except the stopping rule for convergence. The package also provides functions to evaluate and compare the performances of partitions of a data set both numerically and graphically.
Author: Fang Chang , Vincent Carey , Weiliang Qiu , Ruben H. Zamar , Ross Lazarus , Xiaogang Wang
Maintainer: Weiliang Qiu

Diff between clues versions 0.5-4 dated 2014-05-21 and 0.5.6 dated 2015-02-18

 DESCRIPTION   |   17 +++++++++--------
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 7 files changed, 73 insertions(+), 35 deletions(-)

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Package broom updated to version 0.3.6 with previous version 0.3.5 dated 2015-01-05

Title: Convert Statistical Analysis Objects into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames, so that they can more easily be combined, reshaped and otherwise processed with tools like dplyr, tidyr and ggplot2. The package provides three S3 generics: tidy, which summarizes a model's statistical findings such as coefficients of a regression; augment, which adds columns to the original data such as predictions, residuals and cluster assignments; and glance, which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre], Matthieu Gomez [ctb], Boris Demeshev [ctb], Hadley Wickham [ctb]
Maintainer: David Robinson

Diff between broom versions 0.3.5 dated 2015-01-05 and 0.3.6 dated 2015-02-18

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 14 files changed, 102 insertions(+), 41 deletions(-)

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Package PST updated to version 0.86 with previous version 0.84.1 dated 2013-12-20

Title: Probabilistic Suffix Trees and Variable Length Markov Chains
Description: Provides a framework for analysing state sequences with probabilistic suffix trees (PST), the construction that stores variable length Markov chains (VLMC). Besides functions for learning and optimizing VLMC models, the PST library includes many additional tools to analyse sequence data with these models: visualization tools, functions for sequence prediction and artificial sequences generation, as well as for context and pattern mining. The package is specifically adapted to the field of social sciences by allowing to learn VLMC models from sets of individual sequences possibly containing missing values, and by accounting for case weights. The library also allows to compute probabilistic divergence between two models, and to fit segmented VLMC, where sub-models fitted to distinct strata of the learning sample are stored in a single PST. This software results from research work executed within the framework of the Swiss National Centre of Competence in Research LIVES, which is financed by the Swiss National Science Foundation. The authors are grateful to the Swiss National Science Foundation for its financial support.
Author: Alexis Gabadinho [aut, cre, cph]
Maintainer: Alexis Gabadinho

Diff between PST versions 0.84.1 dated 2013-12-20 and 0.86 dated 2015-02-18

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 NAMESPACE          |    2 +-
 NEWS               |   12 ++++++++++++
 R/PSTf-functions.R |   11 +++++++++++
 R/cprob.R          |   12 +++++++-----
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 20 files changed, 116 insertions(+), 103 deletions(-)

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Package multcomp updated to version 1.3-9 with previous version 1.3-8 dated 2014-12-01

Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre], Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb]
Maintainer: Torsten Hothorn

Diff between multcomp versions 1.3-8 dated 2014-12-01 and 1.3-9 dated 2015-02-18

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Package party updated to version 1.0-20 with previous version 1.0-19 dated 2014-12-18

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn

Diff between party versions 1.0-19 dated 2014-12-18 and 1.0-20 dated 2015-02-18

 DESCRIPTION        |   11 ++++++-----
 MD5                |   10 +++++-----
 NAMESPACE          |    2 +-
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 inst/doc/MOB.pdf   |binary
 inst/doc/party.pdf |binary
 6 files changed, 17 insertions(+), 11 deletions(-)

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New package HistDAWass with initial version 0.1
Package: HistDAWass
Type: Package
Title: Histogram-Valued Data Analysis
Version: 0.1
Date: 2015-02-17
Authors@R: c(person("Antonio", "Irpino", role = c("aut", "cre"), email = "antonio.irpino@unina2.it"))
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino
Description: In the framework of Symbolic Data Analysis, a relatively new approach to the statistical analysis of multi-valued data, we consider histogram-valued data, i.e., data described by univariate histograms. The methods and the basic statistics for histogram-valued data are mainly based on the L2 Wasserstein metric between distributions, i.e., a Euclidean metric between quantile functions. The package contains unsupervised classification techniques, least square regression and tools for histogram-valued data and for histogram time series.
License: GPL (>= 2)
Imports: methods, FactoMineR, class
Depends: R (>= 2.10), graphics
LazyData: true
Collate: 'All_classes.R' 'Fuzzy_cmeans.R' 'H_time_series.R' 'HistDAWass-package.R' 'Kohonen_maps.R' 'Met_HTS.R' 'Met_MatH.R' 'Met_distributionH.R' 'Utility.R' 'principal_components.R' 'regression.R' 'unsuperv_classification.R'
NeedsCompilation: no
Packaged: 2015-02-18 15:09:08 UTC; Antonio
Repository: CRAN
Date/Publication: 2015-02-18 17:08:50

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Package segmented updated to version 0.5-1.1 with previous version 0.5-1.0 dated 2014-12-12

Title: Regression Models with Breakpoints/Changepoints Estimation
Description: Given a regression model, segmented `updates' the model by adding one or more segmented (i.e., piecewise-linear) relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo

Diff between segmented versions 0.5-1.0 dated 2014-12-12 and 0.5-1.1 dated 2015-02-18

 segmented |only
 1 file changed

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Package RNiftyReg updated to version 1.1.3 with previous version 1.1.2 dated 2013-11-07

Title: Medical Image Registration Using the NiftyReg Library
Description: Provides an R interface to the NiftyReg image registration tools . Linear and nonlinear registration are supported.
Author: Jon Clayden, based on original code by Marc Modat and Pankaj Daga
Maintainer: Jon Clayden

Diff between RNiftyReg versions 1.1.2 dated 2013-11-07 and 1.1.3 dated 2015-02-18

 DESCRIPTION                          |   17 +++++++++--------
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 R/transform.R                        |    6 ++----
 src/_reg_localTransformation_be.cpp  |    4 ++++
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 8 files changed, 53 insertions(+), 23 deletions(-)

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New package modMax with initial version 1.0
Package: modMax
Type: Package
Title: Community Structure Detection via Modularity Maximization
Version: 1.0
Date: 2015-02-09
Author: Maria Schelling, Cang Hui
Maintainer: Maria Schelling
Depends: gtools, igraph
Description: The algorithms implemented here are used to detect the community structure of a network. These algorithms follow different approaches, but are all based on the concept of modularity maximization.
License: GPL-2
Packaged: 2015-02-18 09:44:37 UTC; xxx
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 13:58:02

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New package semsfa with initial version 1.0
Package: semsfa
Type: Package
Title: Semiparametric Estimation of Stochastic Frontier Models
Version: 1.0
Date: 2015-02-18
Author: Giancarlo Ferrara and Francesco Vidoli
Maintainer: Giancarlo Ferrara
Description: Semiparametric Estimation of Stochastic Frontier Models following a two step procedure: in the first step semiparametric or nonparametric regression techniques are used to relax parametric restrictions of the functional form representing technology and in the second step variance parameters are obtained by pseudolikelihood estimators or by method of moments.
Depends: R (>= 3.1.2), mgcv, np,
Imports: moments, doParallel, foreach, iterators
License: GPL
Packaged: 2015-02-18 08:13:25 UTC; gferrara
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:36:02

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Package multitaper updated to version 1.0-10 with previous version 1.0-9 dated 2014-12-13

Title: Multitaper Spectral Analysis Tools
Description: Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers. It includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson's Harmonic F-test, and complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed confidence intervals are available for most estimates.
Author: Karim Rahim , Wesley S. Burr
Maintainer: Karim Rahim

Diff between multitaper versions 1.0-9 dated 2014-12-13 and 1.0-10 dated 2015-02-18

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 NAMESPACE           |    1 +
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 13 files changed, 91 insertions(+), 85 deletions(-)

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New package MortalitySmooth with initial version 2.3.4
Package: MortalitySmooth
Type: Package
Title: Smoothing and Forecasting Poisson Counts with P-Splines
Version: 2.3.4
Date: 2015-02-18
Author: Carlo G Camarda
Maintainer: Carlo G Camarda
Depends: R (>= 3.0.2), svcm, lattice
Description: Smoothing one- and two-dimensional Poisson counts with P-splines specifically tailored to mortality data. Extra-Poisson variation can be accounted as well as forecasting. Collection of mortality data and a specific function for selecting those data by country, sex, age and years.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2015-02-18 10:19:48 UTC; giancarlo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:45:57

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New package frmpd with initial version 1.0.1
Package: frmpd
Type: Package
Title: Regression Analysis of Panel Fractional Responses
Version: 1.0.1
Date: 2015-02-18
Author: Joaquim J.S. Ramalho
Maintainer: Joaquim J.S. Ramalho
Description: Estimation of panel data regression models for fractional responses.
License: GPL-2
Packaged: 2015-02-18 09:33:04 UTC; Joaquim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:35:59

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Package ensembleBMA updated to version 5.1 with previous version 5.0.8 dated 2014-04-14

Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts from ensemble forecasts and weather observations.
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann Gneiting, University of Washington.
Maintainer: Chris Fraley

Diff between ensembleBMA versions 5.0.8 dated 2014-04-14 and 5.1 dated 2015-02-18

 CHANGELOG               |    5 +++
 DESCRIPTION             |    8 +++---
 MD5                     |   26 ++++++++++----------
 NAMESPACE               |   62 ++++++++++++++++++++++++++++++++++++++++++++++++
 R/controlBMAgamma.R     |    5 ++-
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 R/controlBMAnormal.R    |    2 -
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 14 files changed, 137 insertions(+), 41 deletions(-)

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