Title: Bayesian Inference for Beta Regression and Zero/One Inflated
Beta Regression
Diff between zoib versions 1.1 dated 2015-02-01 and 1.2 dated 2015-02-18
Description: Fits beta regression and zero/one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu
Maintainer: Fang Liu
DESCRIPTION | 15 +++----
MD5 | 90 +++++++++++++++++++++---------------------
NAMESPACE | 2
R/check.psrf.R | 37 ++++-------------
R/joint.1z.R | 6 +-
R/joint.1z0.R | 6 +-
R/joint.1z01.R | 6 +-
R/joint.1z1.R | 6 +-
R/joint.2z.R | 8 +--
R/joint.2z0.R | 8 +--
R/joint.2z01.R | 8 +--
R/joint.2z1.R | 8 +--
R/paraplot.R |only
R/sep.1z.R | 6 +-
R/sep.1z0.R | 6 +-
R/sep.1z01.R | 7 +--
R/sep.1z1.R | 6 +-
R/sep.2z.R | 10 ++--
R/sep.2z0.R | 8 +--
R/sep.2z01.R | 8 +--
R/sep.2z1.R | 9 +---
R/zoib.R | 32 ++-------------
data/AlcoholUse.rda |binary
data/BiRepeated.rda |binary
data/GasolineYield.rda |binary
inst/bugs/sep_2z.bug | 1
man/AlcoholUse.Rd | 52 ++++++++++++------------
man/BiRepeated.Rd | 53 ++++++++++--------------
man/GasolineYield.Rd | 45 +++++++++------------
man/check.psrf.Rd | 24 +++--------
man/joint.1z0.Rd | 2
man/joint.1z1.Rd | 6 +-
man/joint.2z01.Rd | 2
man/joint.2z1.Rd | 4 -
man/paraplot.Rd |only
man/sep.1z.Rd | 4 -
man/sep.1z0.Rd | 4 -
man/sep.1z01.Rd | 4 -
man/sep.1z1.Rd | 4 -
man/sep.2z.Rd | 4 -
man/sep.2z0.Rd | 4 -
man/sep.2z01.Rd | 4 -
man/sep.2z1.Rd | 4 -
man/zoib-package.Rd | 19 +++++---
man/zoib.Rd | 104 ++++++++++++++++++-------------------------------
tests/test1.R | 4 -
tests/test2.R | 14 +++---
47 files changed, 288 insertions(+), 366 deletions(-)
Title: Blinder-Oaxaca Decomposition
Diff between oaxaca versions 0.1 dated 2014-11-20 and 0.1.2 dated 2015-02-18
Description: An implementation of the Blinder-Oaxaca decomposition for linear regression models.
Author: Marek Hlavac
Maintainer: Marek Hlavac
DESCRIPTION | 10 +++++-----
MD5 | 32 ++++++++++++++++----------------
NAMESPACE | 6 ++++--
R/oaxaca-internal.R | 4 ++--
build/vignette.rds |binary
inst/CITATION | 6 +++---
inst/ChangeLog | 6 +++++-
inst/doc/oaxaca.Rtex | 43 +++++++++++++++++++------------------------
inst/doc/oaxaca.pdf |binary
man/oaxaca.Rd | 4 ++--
man/plot.oaxaca.Rd | 4 ++--
vignettes/figure1.pdf |binary
vignettes/figure2.pdf |binary
vignettes/figure3.pdf |binary
vignettes/figure4.pdf |binary
vignettes/oaxaca.Rtex | 43 +++++++++++++++++++------------------------
vignettes/oaxaca.bib | 10 +++++-----
17 files changed, 82 insertions(+), 86 deletions(-)
Title: Random Cluster Generation (with Specified Degree of Separation)
Diff between clusterGeneration versions 1.3.1 dated 2013-01-08 and 1.3.4 dated 2015-02-18
More information about clusterGeneration at CRAN
Description: We developed the clusterGeneration package to provide functions
for generating random clusters, generating random
covariance/correlation matrices,
calculating a separation index (data and population version)
for pairs of clusters or cluster distributions, and 1-D and 2-D
projection plots to visualize clusters. The package also
contains a function to generate random clusters based on
factorial designs with factors such as degree of separation,
number of clusters, number of variables, number of noisy
variables.
Author: Weiliang Qiu
Maintainer: Weiliang Qiu
DESCRIPTION | 16 +++++++++-------
MD5 | 6 +++---
NEWS | 7 +++++++
R/separation.R | 4 ++--
4 files changed, 21 insertions(+), 12 deletions(-)
Permanent link
Title: Clustering Method Based on Local Shrinking
Diff between clues versions 0.5-4 dated 2014-05-21 and 0.5.6 dated 2015-02-18
Description: We developed the clues R package to provide functions
for automatically estimating the number of clusters and
getting the final cluster partition without any input
parameter except the stopping rule for convergence.
The package also provides functions to
evaluate and compare the performances of partitions of a data
set both numerically and graphically.
Author: Fang Chang
Maintainer: Weiliang Qiu
DESCRIPTION | 17 +++++++++--------
MD5 | 11 ++++++-----
NEWS |only
R/clues.R | 17 ++++++++++++-----
R/clues_CH.R | 31 +++++++++++++++++++++++--------
R/clues_sil.R | 30 ++++++++++++++++++++++--------
man/clues.Rd | 2 +-
7 files changed, 73 insertions(+), 35 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Data Frames
Diff between broom versions 0.3.5 dated 2015-01-05 and 0.3.6 dated 2015-02-18
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like dplyr, tidyr and ggplot2. The package provides three S3
generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance,
which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson
DESCRIPTION | 24 ++++++++++++------------
MD5 | 24 +++++++++++++-----------
NAMESPACE | 3 +++
R/anova_tidiers.R | 40 +++++++++++++++++++++++++++++++++++++---
R/globals.R | 2 +-
R/lm_tidiers.R | 4 +++-
R/matrix_tidiers.R |only
R/stats_tidiers.R | 14 +++++++++-----
inst/doc/bootstrapping.html | 2 +-
inst/doc/broom_and_dplyr.html | 2 +-
inst/doc/kmeans.html | 6 +++---
man/anova_tidiers.Rd | 15 ++++++++++++++-
man/matrix_tidiers.Rd |only
man/tidy.pairwise.htest.Rd | 7 +++++--
14 files changed, 102 insertions(+), 41 deletions(-)
Title: Probabilistic Suffix Trees and Variable Length Markov Chains
Diff between PST versions 0.84.1 dated 2013-12-20 and 0.86 dated 2015-02-18
Description: Provides a framework for analysing state sequences with probabilistic suffix trees (PST), the construction that stores variable length Markov chains (VLMC). Besides functions for learning and optimizing VLMC models, the PST library includes many additional tools to analyse sequence data with these models: visualization tools, functions for sequence prediction and artificial sequences generation, as well as for context and pattern mining. The package is specifically adapted to the field of social sciences by allowing to learn VLMC models from sets of individual sequences possibly containing missing values, and by accounting for case weights. The library also allows to compute probabilistic divergence between two models, and to fit segmented VLMC, where sub-models fitted to distinct strata of the learning sample are stored in a single PST. This software results from research work executed within the framework of the Swiss National Centre of Competence in Research LIVES, which is financed by the Swiss National Science Foundation. The authors are grateful to the Swiss National Science Foundation for its financial support.
Author: Alexis Gabadinho [aut, cre, cph]
Maintainer: Alexis Gabadinho
DESCRIPTION | 22 ++++++++++++----------
MD5 | 38 +++++++++++++++++++-------------------
NAMESPACE | 2 +-
NEWS | 12 ++++++++++++
R/PSTf-functions.R | 11 +++++++++++
R/cprob.R | 12 +++++++-----
R/generate.R | 34 ++++++++++++++++++++++------------
R/plotNode.R | 28 +++++-----------------------
R/prune.R | 12 +++---------
R/pstree.R | 13 ++++---------
data/SRH.RData |binary
data/s1.rda |binary
man/PSTf-class.Rd | 2 +-
man/PSTr-class.Rd | 4 ++--
man/SRH-data.Rd | 2 +-
man/cprob.Rd | 2 +-
man/generate.Rd | 7 +++++--
man/nobs.Rd | 2 +-
man/prune.Rd | 3 ++-
man/pstree.Rd | 13 +++++++------
20 files changed, 116 insertions(+), 103 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Diff between multcomp versions 1.3-8 dated 2014-12-01 and 1.3-9 dated 2015-02-18
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb]
Maintainer: Torsten Hothorn
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/expressions.R | 2 +-
R/helpers.R | 9 ++++++---
inst/NEWS | 5 +++++
inst/doc/chfls1.pdf |binary
inst/doc/generalsiminf.pdf |binary
inst/doc/multcomp-examples.pdf |binary
8 files changed, 23 insertions(+), 15 deletions(-)
Title: A Laboratory for Recursive Partytioning
Diff between party versions 1.0-19 dated 2014-12-18 and 1.0-20 dated 2015-02-18
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 11 ++++++-----
MD5 | 10 +++++-----
NAMESPACE | 2 +-
inst/NEWS | 5 +++++
inst/doc/MOB.pdf |binary
inst/doc/party.pdf |binary
6 files changed, 17 insertions(+), 11 deletions(-)
Title: Regression Models with Breakpoints/Changepoints Estimation
Diff between segmented versions 0.5-1.0 dated 2014-12-12 and 0.5-1.1 dated 2015-02-18
Description: Given a regression model, segmented `updates' the model by adding one or more segmented (i.e., piecewise-linear) relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo
segmented |only
1 file changed
Title: Medical Image Registration Using the NiftyReg Library
Diff between RNiftyReg versions 1.1.2 dated 2013-11-07 and 1.1.3 dated 2015-02-18
Description: Provides an R interface to the NiftyReg image registration tools
Author: Jon Clayden, based on original code by Marc Modat and Pankaj Daga
Maintainer: Jon Clayden
DESCRIPTION | 17 +++++++++--------
MD5 | 14 +++++++-------
NEWS | 7 +++++++
R/transform.R | 6 ++----
src/_reg_localTransformation_be.cpp | 4 ++++
src/_reg_localTransformation_jac.cpp | 4 ++++
src/_reg_tools.cpp | 12 ++++++++++++
src/niftyreg.cpp | 12 ++++++++----
8 files changed, 53 insertions(+), 23 deletions(-)
Title: Multitaper Spectral Analysis Tools
Diff between multitaper versions 1.0-9 dated 2014-12-13 and 1.0-10 dated 2015-02-18
Description: Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers. It includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson's Harmonic F-test, and complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed confidence intervals are available for most estimates.
Author: Karim Rahim
Maintainer: Karim Rahim
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
NAMESPACE | 1 +
R/demod.R | 3 ++-
R/multitaper.R | 33 +++++++++++++++------------------
R/plots.R | 22 ++++++++++++----------
R/plotsHelper.R | 18 +++++++++++-------
man/mtm.coh.Rd | 3 ++-
man/plot.mtm.coh.Rd | 5 +++++
src/Makevars | 12 ++++++------
src/djt.f | 14 ++++++--------
src/dpss.f90 | 14 +++++++-------
src/sine.f | 19 ++++++++-----------
13 files changed, 91 insertions(+), 85 deletions(-)
More information about MortalitySmooth at CRAN
Permanent link
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Diff between ensembleBMA versions 5.0.8 dated 2014-04-14 and 5.1 dated 2015-02-18
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington.
Maintainer: Chris Fraley
CHANGELOG | 5 +++
DESCRIPTION | 8 +++---
MD5 | 26 ++++++++++----------
NAMESPACE | 62 ++++++++++++++++++++++++++++++++++++++++++++++++
R/controlBMAgamma.R | 5 ++-
R/controlBMAgamma0.R | 5 ++-
R/controlBMAnormal.R | 2 -
R/dataNA.ensembleData.R | 2 -
R/ensembleBMAnormal.R | 3 +-
R/fitBMAgamma.R | 12 ++++++---
R/fitBMAgamma0.R | 8 +++++-
R/plotProbcast.R | 16 ++++++------
man/controlBMAgamma.Rd | 14 ++++++++--
man/controlBMAgamma0.Rd | 10 ++++++-
14 files changed, 137 insertions(+), 41 deletions(-)