Title: Summaries and Population Structure Analyses of Haplotypic and
Genotypic Data
Description: A toolkit for analyzing stratified population genetic data.
Author: Eric Archer
Maintainer: Eric Archer
Diff between strataG versions 0.9.2 dated 2014-12-31 and 0.9.4 dated 2015-02-22
DESCRIPTION | 8 - MD5 | 234 +++++++++++++++++----------------- NAMESPACE | 2 R/gtypes.R | 20 +- R/gtypes.default.R | 249 ++++++++++++++++++------------------- R/is.gtypes.R | 2 R/jmodeltest.run.R | 39 +++-- R/merge.gtypes.R | 6 R/nucleotide.diversity.R | 13 + R/pop.diff.test.R | 18 ++ man/align.clustal.Rd | 3 man/align.folder.Rd | 3 man/align.mafft.Rd | 3 man/allele.freq.format.Rd | 3 man/allele.freqs.Rd | 3 man/allele.split.Rd | 3 man/allelic.richness.Rd | 3 man/as.data.frame.gtypes.Rd | 3 man/as.dna.seq.Rd | 3 man/as.matrix.gtypes.Rd | 3 man/base.freqs.Rd | 3 man/bowhead.snp.position.Rd | 3 man/bowhead.snps.Rd | 3 man/check.genotypes.Rd | 3 man/check.seqs.Rd | 3 man/clumpp.run.Rd | 3 man/create.consensus.Rd | 3 man/decode.Rd | 3 man/diversity.Rd | 3 man/dolph.haps.Rd | 3 man/dolph.msats.Rd | 3 man/dolph.seqs.Rd | 3 man/dolph.strata.Rd | 3 man/dup.genotypes.Rd | 3 man/exptd.het.Rd | 3 man/fastsimcoal.run.Rd | 3 man/fisher.method.p.Rd | 3 man/fixed.differences.Rd | 3 man/fixed.sites.Rd | 3 man/fst.to.nm.Rd | 3 man/gelato.plot.Rd | 3 man/gelato.run.Rd | 3 man/gen.data.from.freq.Rd | 3 man/genepop.run.Rd | 3 man/gtype.struct.func.Rd | 3 man/gtypes.Rd | 21 +-- man/h.stats.Rd | 3 man/hap.freqs.Rd | 3 man/haplotype.likelihoods.Rd | 3 man/haplotypic.diversity.Rd | 3 man/hwe.genepop.Rd | 3 man/is.diploid.Rd | 3 man/is.gtype.struct.func.Rd | 3 man/iupac.code.Rd | 3 man/jack.hwe.Rd | 3 man/jmodeltest.run.Rd | 10 + man/label.haplotypes.Rd | 3 man/linkage.genepop.Rd | 3 man/locus.names.Rd | 3 man/low.freq.subs.Rd | 3 man/merge.gtypes.Rd | 10 + man/most.distant.sequences.Rd | 3 man/na.omit.gtypes.Rd | 3 man/nei.Da.Rd | 3 man/nucleotide.divergence.Rd | 3 man/nucleotide.diversity.Rd | 7 - man/num.alleles.Rd | 3 man/num.alleles.shared.Rd | 3 man/num.gens.eq.Rd | 3 man/num.missing.Rd | 3 man/obsvd.het.Rd | 3 man/p.val.Rd | 3 man/pairwise.shared.loci.Rd | 3 man/pct.unique.haplotypes.Rd | 3 man/phase.run.Rd | 3 man/pop.diff.test.Rd | 19 ++ man/print.gtypeSummary.Rd | 3 man/read.arlequin.Rd | 3 man/read.fasta.Rd | 3 man/read.gen.data.Rd | 3 man/read.mega.Rd | 3 man/relabel.sequences.Rd | 3 man/restratify.Rd | 3 man/sequence.summary.Rd | 3 man/shared.haps.Rd | 3 man/sim.gamma.haps.Rd | 3 man/smry.by.locus.Rd | 3 man/smry.by.sample.Rd | 3 man/stat.chi2.Rd | 3 man/stat.d.jost.Rd | 3 man/stat.fst.Rd | 3 man/stat.fst.prime.Rd | 3 man/stat.gst.Rd | 3 man/stat.gst.dbl.prime.Rd | 3 man/stat.gst.prime.hedrick.Rd | 3 man/stat.gst.prime.nei.Rd | 3 man/stat.phist.Rd | 3 man/stopifnot.gtype.struct.func.Rd | 3 man/strata.pairs.Rd | 3 man/strata.split.Rd | 3 man/strataG-package.Rd | 3 man/structure.evanno.Rd | 3 man/structure.parse.q.mat.Rd | 3 man/structure.plot.Rd | 3 man/structure.run.Rd | 3 man/subset.gtypes.Rd | 3 man/summarize.loci.Rd | 3 man/summarize.sequences.Rd | 3 man/summary.gtypes.Rd | 3 man/tajimas.d.Rd | 3 man/theta.Rd | 3 man/ti.tv.ratio.Rd | 3 man/trim.ns.Rd | 3 man/valid.iupac.codes.Rd | 3 man/variable.sites.Rd | 3 man/wright.fst.Rd | 3 man/write.gtypes.Rd | 3 man/write.snapp.nexus.Rd | 3 118 files changed, 563 insertions(+), 404 deletions(-)
Title: Mixed Models, Particularly Spatial GLMMs
Description: Implements a collection of functions for inference in mixed models. It was developed in particular for GLMMs with spatial correlations, but also fits models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph]
Maintainer: François Rousset
Diff between spaMM versions 1.4.1 dated 2014-11-08 and 1.5.1 dated 2015-02-22
spaMM-1.4.1/spaMM/R/blockDiag.R |only spaMM-1.4.1/spaMM/R/ordinaryKrigingCoefs.R |only spaMM-1.4.1/spaMM/man/spaMM-internal-blockDiag.Rd |only spaMM-1.5.1/spaMM/DESCRIPTION | 8 spaMM-1.5.1/spaMM/MD5 | 126 +-- spaMM-1.5.1/spaMM/NAMESPACE | 17 spaMM-1.5.1/spaMM/R/HLCor.R | 31 spaMM-1.5.1/spaMM/R/HLFactorList.R | 65 - spaMM-1.5.1/spaMM/R/HLfit.R | 789 ++++++++++++------- spaMM-1.5.1/spaMM/R/HLframes.R | 63 + spaMM-1.5.1/spaMM/R/LR.R | 12 spaMM-1.5.1/spaMM/R/MakeCovEst.R |only spaMM-1.5.1/spaMM/R/RcppExports.R | 8 spaMM-1.5.1/spaMM/R/auglinmodfit.R | 156 ++- spaMM-1.5.1/spaMM/R/calc.p_v.R | 20 spaMM-1.5.1/spaMM/R/confint.R | 6 spaMM-1.5.1/spaMM/R/corrHLfit.R | 66 - spaMM-1.5.1/spaMM/R/corrMM.LRT.R | 16 spaMM-1.5.1/spaMM/R/correlationFns.R | 77 + spaMM-1.5.1/spaMM/R/extractors.R | 42 - spaMM-1.5.1/spaMM/R/is.diagonal.R | 15 spaMM-1.5.1/spaMM/R/locoptim.R | 2 spaMM-1.5.1/spaMM/R/locoptimthroughsmooth.R | 12 spaMM-1.5.1/spaMM/R/mapMM.R | 377 +++++---- spaMM-1.5.1/spaMM/R/migraineLike.R | 51 - spaMM-1.5.1/spaMM/R/plot.HLfit.R | 15 spaMM-1.5.1/spaMM/R/predict.R | 223 +++-- spaMM-1.5.1/spaMM/R/preprocess.R | 11 spaMM-1.5.1/spaMM/R/profile.R | 2 spaMM-1.5.1/spaMM/R/simulate.HL.R | 31 spaMM-1.5.1/spaMM/R/spaMM.data.R | 15 spaMM-1.5.1/spaMM/R/summary.HL.R | 16 spaMM-1.5.1/spaMM/R/utils.R | 10 spaMM-1.5.1/spaMM/inst/CITATION | 8 spaMM-1.5.1/spaMM/inst/NEWS.Rd |only spaMM-1.5.1/spaMM/man/HLCor.Rd | 21 spaMM-1.5.1/spaMM/man/HLfit.Rd | 2 spaMM-1.5.1/spaMM/man/Matern.corr.Rd | 4 spaMM-1.5.1/spaMM/man/Predictor.Rd | 2 spaMM-1.5.1/spaMM/man/arabidopsis.Rd | 2 spaMM-1.5.1/spaMM/man/confint.Rd | 8 spaMM-1.5.1/spaMM/man/corMatern.Rd | 14 spaMM-1.5.1/spaMM/man/corrHLfit.Rd | 37 spaMM-1.5.1/spaMM/man/extractors.Rd | 17 spaMM-1.5.1/spaMM/man/fixed.LRT.Rd | 16 spaMM-1.5.1/spaMM/man/make.scaled.dist.Rd | 25 spaMM-1.5.1/spaMM/man/mapMM.Rd | 96 +- spaMM-1.5.1/spaMM/man/options.Rd | 13 spaMM-1.5.1/spaMM/man/predict.Rd | 52 - spaMM-1.5.1/spaMM/man/salamander.Rd | 6 spaMM-1.5.1/spaMM/man/scotlip.Rd | 2 spaMM-1.5.1/spaMM/man/seaMask.Rd | 6 spaMM-1.5.1/spaMM/man/seeds.Rd | 2 spaMM-1.5.1/spaMM/man/simulate.HLCor.Rd | 6 spaMM-1.5.1/spaMM/man/spaMM-internal-Rcpp.Rd | 3 spaMM-1.5.1/spaMM/man/spaMM-internal-migraine.Rd | 1 spaMM-1.5.1/spaMM/man/spaMM-internal.Rd | 21 spaMM-1.5.1/spaMM/man/spaMM.Rd | 29 spaMM-1.5.1/spaMM/man/spaMM.filled.contour.Rd | 27 spaMM-1.5.1/spaMM/man/spaMMcolors.Rd | 4 spaMM-1.5.1/spaMM/src/RcppExports.cpp | 31 spaMM-1.5.1/spaMM/src/spaMM_linear.cpp | 99 +- spaMM-1.5.1/spaMM/tests/test-all.R |only spaMM-1.5.1/spaMM/tests/testthat/test-HLfit.R | 2 spaMM-1.5.1/spaMM/tests/testthat/test-filled.mapMM.R | 11 spaMM-1.5.1/spaMM/tests/testthat/test-sp-nsp.R | 2 spaMM-1.5.1/spaMM/tests/testthat/test-spaMM.R | 4 67 files changed, 1797 insertions(+), 1058 deletions(-)
Title: A Framework for Comparing the Performance of MCMC Samplers
Description: A framework for running sets of MCMC samplers on sets of
distributions with a variety of tuning parameters, along with plotting
functions to visualize the results of those simulations. See sc-intro.pdf
for an introduction.
Author: Madeleine Thompson, except dchud.f and dchdd.f, which were written by
G. W. Stewart.
Maintainer: Madeleine Thompson
Diff between SamplerCompare versions 1.2.5 dated 2013-12-22 and 1.2.6 dated 2015-02-22
DESCRIPTION | 21 ++++++++++----------- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 3 ++- R/00dist-util.R | 10 +++++----- R/act.R | 2 +- R/compare-samplers.R | 2 +- R/distributions.R | 4 +++- build/vignette.rds |binary inst/doc/glue.Rnw | 6 +++--- inst/doc/glue.pdf |binary inst/doc/sc-intro.Rnw | 2 +- inst/doc/sc-intro.pdf |binary man/SamplerCompare-package.Rd | 16 ++++++++-------- man/compare.samplers.Rd | 4 ++-- man/dist-class.Rd | 4 ++-- man/make.c.dist.Rd | 2 +- man/make.cone.dist.Rd | 2 +- man/make.dist.Rd | 2 +- man/make.multimodal.dist.Rd | 2 +- man/make.mv.gamma.dist.Rd | 2 +- vignettes/glue.Rnw | 6 +++--- vignettes/sc-intro.Rnw | 2 +- 22 files changed, 68 insertions(+), 66 deletions(-)
More information about SamplerCompare at CRAN
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Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson
Diff between PSCBS versions 0.43.0 dated 2014-06-09 and 0.44.0 dated 2015-02-22
PSCBS-0.43.0/PSCBS/R/PairedPSCBS.BOOT,DEPRECATED.R |only PSCBS-0.44.0/PSCBS/DESCRIPTION | 20 +++++------ PSCBS-0.44.0/PSCBS/MD5 | 34 ++++++++++---------- PSCBS-0.44.0/PSCBS/NAMESPACE | 6 ++- PSCBS-0.44.0/PSCBS/NEWS | 12 ++++++- PSCBS-0.44.0/PSCBS/R/AbstractCBS.PRUNE.R | 2 - PSCBS-0.44.0/PSCBS/R/PairedPSCBS.BOOT,DEFUNCT.R |only PSCBS-0.44.0/PSCBS/R/PairedPSCBS.estimateDeltaLOH.R | 2 - PSCBS-0.44.0/PSCBS/R/PairedPSCBS.estimateKappa.R | 2 - PSCBS-0.44.0/PSCBS/R/prememoize.R | 2 - PSCBS-0.44.0/PSCBS/build/vignette.rds |binary PSCBS-0.44.0/PSCBS/inst/doc/CBS.R | 5 +- PSCBS-0.44.0/PSCBS/inst/doc/CBS.pdf |binary PSCBS-0.44.0/PSCBS/inst/doc/CBS.tex.rsp | 14 ++++---- PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.R | 5 +- PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.pdf |binary PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.tex.rsp | 17 +++++----- PSCBS-0.44.0/PSCBS/vignettes/CBS.tex.rsp | 14 ++++---- PSCBS-0.44.0/PSCBS/vignettes/PairedPSCBS.tex.rsp | 17 +++++----- 19 files changed, 89 insertions(+), 63 deletions(-)
Title: Mazama Science Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized
spatial polygons dataframes. Utility scripts use these datasets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Will Leahy [aut],
Henry Nguyen [aut]
Maintainer: Jonathan Callahan
Diff between MazamaSpatialUtils versions 0.1.2 dated 2015-02-11 and 0.2.1 dated 2015-02-22
MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/CountryTable.Rd |only MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/StateTable.Rd |only MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/TimezoneTable.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/DESCRIPTION | 15 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/MD5 | 116 ++++--- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/NAMESPACE | 7 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/MazamaSpatialUtils.R | 151 +++------- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertGADM.R |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertLayer.R | 9 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertNaturalEarthAdm1.R | 85 +++-- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertTMWorldBorders.R | 45 +- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertTMWorldBordersSimple.R | 51 +-- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertUSCensusCounties.R | 43 +- MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertUSGSHUC8.R |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertWikipediaTimezoneTable.R | 20 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertWorldTimezones.R | 29 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountry.R | 16 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountryCode.R | 18 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountryName.R | 18 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getSpatialData.R | 7 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getState.R | 13 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getStateCode.R | 17 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getStateName.R | 13 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getTimezone.R | 10 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getUSCounty.R | 11 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getVariable.R |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/installSpatialData.R | 14 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/loadSpatialData.R | 5 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/organizePolygons.R |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/data/SimpleCountries.RData |binary MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/data/SimpleTimezones.RData |binary MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/inst/doc/introduction.html | 19 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 1 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/SpatialDataDir.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToCode.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToCountry.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToState.Rd | 4 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertGADM.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertLayer.Rd | 9 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 15 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertTMWorldBorders.Rd | 11 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd | 11 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertUSCensusCounties.Rd | 11 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertUSGSHUC8.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertWikipediaTimezoneTable.Rd | 7 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertWorldTimezones.Rd | 11 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/countryToCode.Rd | 4 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountry.Rd | 15 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountryCode.Rd | 15 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountryName.Rd | 17 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getSpatialData.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getSpatialDataDir.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getState.Rd | 12 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getStateCode.Rd | 14 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getStateName.Rd | 12 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getTimezone.Rd | 10 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getUSCounty.Rd | 8 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getVariable.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/initializeSpatialData.Rd | 17 - MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/installSpatialData.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/loadSpatialData.Rd | 2 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/organizePolygons.Rd |only MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/setSpatialDataDir.Rd | 6 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/stateToCode.Rd | 8 MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/tests/testthat/test1.R | 4 65 files changed, 499 insertions(+), 487 deletions(-)
More information about MazamaSpatialUtils at CRAN
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Title: Statistical Estimation of Game-Theoretic Models
Description: Provides estimation and analysis functions for
strategic statistical models.
Author: Curtis S. Signorino [aut],
Brenton Kenkel [aut, cre]
Maintainer: Brenton Kenkel
Diff between games versions 1.1-1 dated 2014-01-17 and 1.1.2 dated 2015-02-22
games-1.1-1/games/NEWS |only games-1.1-1/games/R/helpers.r |only games-1.1.2/games/DESCRIPTION | 14 +-- games-1.1.2/games/MD5 | 101 ++++++++++++++--------- games-1.1.2/games/NAMESPACE | 2 games-1.1.2/games/R/checkFormulas.r |only games-1.1.2/games/R/checkLocalID.r |only games-1.1.2/games/R/convergenceCriterion.r |only games-1.1.2/games/R/doc.r | 17 --- games-1.1.2/games/R/egame12.r | 48 ----------- games-1.1.2/games/R/egame122.r | 33 ------- games-1.1.2/games/R/egame123.r | 21 ---- games-1.1.2/games/R/finiteProbs.r |only games-1.1.2/games/R/gameBoot.r |only games-1.1.2/games/R/games.r | 26 +----- games-1.1.2/games/R/getGameVcov.r |only games-1.1.2/games/R/intersectAll.r |only games-1.1.2/games/R/latexTable.r | 16 --- games-1.1.2/games/R/makeFormulas.r | 86 ------------------- games-1.1.2/games/R/makeUtils.r |only games-1.1.2/games/R/makeVarNames.r |only games-1.1.2/games/R/nonnest.r | 38 -------- games-1.1.2/games/R/predProbs.r | 98 ++-------------------- games-1.1.2/games/R/profile.r | 25 ----- games-1.1.2/games/R/svalsFromProfile.r |only games-1.1.2/games/R/ultimatum.r | 43 +++------ games-1.1.2/games/inst/examples |only games-1.1.2/games/man/LW.Rd | 4 games-1.1.2/games/man/Mode.Rd | 14 +-- games-1.1.2/games/man/data_122.Rd | 2 games-1.1.2/games/man/data_123.Rd | 2 games-1.1.2/games/man/data_ult.Rd | 2 games-1.1.2/games/man/egame12.Rd | 121 ++++++++++++---------------- games-1.1.2/games/man/egame122.Rd | 118 +++++++++++---------------- games-1.1.2/games/man/egame123.Rd | 108 +++++++++++------------- games-1.1.2/games/man/games-package.Rd | 6 - games-1.1.2/games/man/latexTable.Rd | 47 +++++----- games-1.1.2/games/man/leblang2003.Rd | 28 ++++-- games-1.1.2/games/man/makeFormulas.Rd | 31 +++---- games-1.1.2/games/man/plot.predProbs.Rd | 55 ++++++------ games-1.1.2/games/man/plot.profile.game.Rd | 13 +-- games-1.1.2/games/man/predProbs.Rd | 59 ++++++------- games-1.1.2/games/man/predict.game.Rd | 24 ++--- games-1.1.2/games/man/print.game.Rd | 6 - games-1.1.2/games/man/print.summary.game.Rd | 9 +- games-1.1.2/games/man/profile.game.Rd | 55 ++++++------ games-1.1.2/games/man/student_offers.Rd | 2 games-1.1.2/games/man/summary.game.Rd | 10 +- games-1.1.2/games/man/ultimatum.Rd | 84 ++++++++----------- games-1.1.2/games/man/vuong.Rd | 50 +++++------ games-1.1.2/games/man/war1800.Rd | 2 games-1.1.2/games/tests |only 52 files changed, 539 insertions(+), 881 deletions(-)
Title: Toolkit of Helper Functions to Pre-Process Amplification Data
Description: A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. The package contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experimental nucleic acid amplification systems (VideoScan HCU, capillary convective PCR (ccPCR)) and commercial systems are included. Amplification curves were generated by helicase dependent amplification (HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used.
Author: Stefan Roediger [cre, aut],
Michal Burdukiewicz [aut],
Konstantin A. Blagodatskikh [ctb]
Maintainer: Stefan Roediger
Diff between chipPCR versions 0.0.8-3 dated 2014-09-29 and 0.0.8-6 dated 2015-02-22
chipPCR-0.0.8-3/chipPCR/man/chipPCR.sp.Rd |only chipPCR-0.0.8-6/chipPCR/CHANGELOG | 18 chipPCR-0.0.8-6/chipPCR/DESCRIPTION | 40 chipPCR-0.0.8-6/chipPCR/MD5 | 179 chipPCR-0.0.8-6/chipPCR/R/CPP.R | 8 chipPCR-0.0.8-6/chipPCR/R/MFIaggr.R | 5 chipPCR-0.0.8-6/chipPCR/R/classes.R | 217 chipPCR-0.0.8-6/chipPCR/R/effcalc.R | 28 chipPCR-0.0.8-6/chipPCR/R/linreg.R |only chipPCR-0.0.8-6/chipPCR/R/smoother.R | 4 chipPCR-0.0.8-6/chipPCR/R/th.cyc.R | 66 chipPCR-0.0.8-6/chipPCR/README.md | 4 chipPCR-0.0.8-6/chipPCR/build/vignette.rds |binary chipPCR-0.0.8-6/chipPCR/data/C126EG595.rda |binary chipPCR-0.0.8-6/chipPCR/data/C126EG685.rda |binary chipPCR-0.0.8-6/chipPCR/data/C127EGHP.rda |binary chipPCR-0.0.8-6/chipPCR/data/C17.rda |binary chipPCR-0.0.8-6/chipPCR/data/C54.rda |binary chipPCR-0.0.8-6/chipPCR/data/C60.amp.rda |binary chipPCR-0.0.8-6/chipPCR/data/C60.melt.rda |binary chipPCR-0.0.8-6/chipPCR/data/C67.rda |binary chipPCR-0.0.8-6/chipPCR/data/C81.rda |binary chipPCR-0.0.8-6/chipPCR/data/C85.rda |binary chipPCR-0.0.8-6/chipPCR/data/CD74.rda |binary chipPCR-0.0.8-6/chipPCR/data/CD75.rda |binary chipPCR-0.0.8-6/chipPCR/data/Eff1000.rda |binary chipPCR-0.0.8-6/chipPCR/data/Eff625.rda |binary chipPCR-0.0.8-6/chipPCR/data/Eff750.rda |binary chipPCR-0.0.8-6/chipPCR/data/Eff875.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_60.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_69.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_meltcurve.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_595.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_685.rda |binary chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_melt.rda |binary chipPCR-0.0.8-6/chipPCR/data/capillaryPCR.rda |binary chipPCR-0.0.8-6/chipPCR/inst/CITATION |only chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.R | 411 - chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.Rnw | 4813 +++++------- chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.pdf |binary chipPCR-0.0.8-6/chipPCR/man/AmpSim.Rd | 20 chipPCR-0.0.8-6/chipPCR/man/AmpSim.gui.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/C126EG595.Rd | 22 chipPCR-0.0.8-6/chipPCR/man/C126EG685.Rd | 24 chipPCR-0.0.8-6/chipPCR/man/C127EGHP.Rd | 87 chipPCR-0.0.8-6/chipPCR/man/C17.Rd | 22 chipPCR-0.0.8-6/chipPCR/man/C54.Rd | 2 chipPCR-0.0.8-6/chipPCR/man/C60.amp.Rd | 10 chipPCR-0.0.8-6/chipPCR/man/C60.melt.Rd | 10 chipPCR-0.0.8-6/chipPCR/man/C67.Rd | 10 chipPCR-0.0.8-6/chipPCR/man/C81.Rd | 12 chipPCR-0.0.8-6/chipPCR/man/C85.Rd | 175 chipPCR-0.0.8-6/chipPCR/man/CD74.Rd | 50 chipPCR-0.0.8-6/chipPCR/man/CD75.Rd | 8 chipPCR-0.0.8-6/chipPCR/man/CPP.Rd | 62 chipPCR-0.0.8-6/chipPCR/man/Eff1000.Rd | 2 chipPCR-0.0.8-6/chipPCR/man/Eff625.Rd | 2 chipPCR-0.0.8-6/chipPCR/man/Eff750.Rd | 2 chipPCR-0.0.8-6/chipPCR/man/Eff875.Rd | 2 chipPCR-0.0.8-6/chipPCR/man/MFIaggr.Rd | 4 chipPCR-0.0.8-6/chipPCR/man/MFIaggr.gui.Rd | 13 chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_60.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_69.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_meltcurve.Rd | 8 chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_595.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_685.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_melt.Rd | 8 chipPCR-0.0.8-6/chipPCR/man/amptest-class.Rd | 1 chipPCR-0.0.8-6/chipPCR/man/amptester.Rd | 9 chipPCR-0.0.8-6/chipPCR/man/amptester.gui.Rd | 11 chipPCR-0.0.8-6/chipPCR/man/bg.max.Rd | 103 chipPCR-0.0.8-6/chipPCR/man/chipPCR-package.Rd | 13 chipPCR-0.0.8-6/chipPCR/man/chipPCR.datasets.Rd | 49 chipPCR-0.0.8-6/chipPCR/man/effcalc.Rd | 11 chipPCR-0.0.8-6/chipPCR/man/fixNA.Rd | 12 chipPCR-0.0.8-6/chipPCR/man/humanrater.Rd | 9 chipPCR-0.0.8-6/chipPCR/man/inder.Rd | 13 chipPCR-0.0.8-6/chipPCR/man/lm.coefs.Rd | 4 chipPCR-0.0.8-6/chipPCR/man/normalizer.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/plot-bg.Rd | 3 chipPCR-0.0.8-6/chipPCR/man/plot-der.Rd | 6 chipPCR-0.0.8-6/chipPCR/man/plot-eff.Rd | 11 chipPCR-0.0.8-6/chipPCR/man/plot-refMFI.Rd | 17 chipPCR-0.0.8-6/chipPCR/man/plotCurves.Rd | 6 chipPCR-0.0.8-6/chipPCR/man/refMFI-class.Rd | 14 chipPCR-0.0.8-6/chipPCR/man/rounder.Rd | 4 chipPCR-0.0.8-6/chipPCR/man/smoother.Rd | 18 chipPCR-0.0.8-6/chipPCR/man/th.cyc.Rd | 8 chipPCR-0.0.8-6/chipPCR/vignettes/chipPCR.Rnw | 4813 +++++------- chipPCR-0.0.8-6/chipPCR/vignettes/datdf.RData |binary chipPCR-0.0.8-6/chipPCR/vignettes/natbib.bst |only chipPCR-0.0.8-6/chipPCR/vignettes/natbib.sty |only chipPCR-0.0.8-6/chipPCR/vignettes/roediger-burdukiewicz.bib | 4270 ++++------ 93 files changed, 7421 insertions(+), 8416 deletions(-)
Title: R Commander
Description:
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox
Diff between Rcmdr versions 2.1-6 dated 2015-02-03 and 2.1-7 dated 2015-02-22
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS | 6 +++ inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/zh_CN |only man/Rcmdr-package.Rd | 5 +- po/R-ca.po | 69 ++++++++++++++++++-------------------- po/R-zh_CN.po |only 8 files changed, 53 insertions(+), 47 deletions(-)
Title: Lattice Graphics
Description: Lattice is a powerful and elegant high-level data
visualization system, with an emphasis on multivariate data, that is
sufficient for typical graphics needs, and is also flexible enough
to handle most nonstandard requirements. See ?Lattice for an
introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
Diff between lattice versions 0.20-29 dated 2014-04-04 and 0.20-30 dated 2015-02-22
DESCRIPTION | 8 MD5 | 72 ++-- R/bwplot.R | 16 - R/cloud.R | 6 R/densityplot.R | 5 R/histogram.R | 3 R/interaction.R | 2 R/layout.R | 2 R/legend.R | 2 R/levelplot.R | 3 R/miscellaneous.R | 17 - R/panels.R | 35 -- R/parallel.R | 4 R/print.trellis.R | 51 --- R/qq.R | 4 R/qqmath.R | 4 R/scales.R | 2 R/settings.R | 496 +++++++++++++++---------------- R/splom.R | 4 R/xyplot.R | 3 data/barley.rda |binary data/environmental.rda |binary data/ethanol.rda |binary data/melanoma.rda |binary data/singer.rda |binary inst/po/de/LC_MESSAGES/R-lattice.mo |binary inst/po/en@quot/LC_MESSAGES/R-lattice.mo |binary inst/po/fr/LC_MESSAGES/R-lattice.mo |binary inst/po/ko/LC_MESSAGES/R-lattice.mo |binary inst/po/pl/LC_MESSAGES/R-lattice.mo |binary man/xyplot.Rd | 5 po/R-de.po | 11 po/R-en@quot.po | 11 po/R-fr.po | 11 po/R-ko.po | 274 ++++++++--------- po/R-lattice.pot | 9 po/R-pl.po | 15 37 files changed, 513 insertions(+), 562 deletions(-)
Title: Methods for Accessing Huge Amounts of Data [deprecated]
Description: DEPRECATED. Do not start building new projects based on this package. Cross-platform alternatives are the following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix (Bioconductor). The main usage of it was inside the aroma.affymetrix package. (The package currently provides a class representing a matrix where the actual data is stored in a binary format on the local file system. This way the size limit of the data is set by the file system and not the memory.)
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
Diff between R.huge versions 0.8.0 dated 2014-02-26 and 0.9.0 dated 2015-02-22
.Rinstignore |only DESCRIPTION | 18 +++++++------ MD5 | 20 +++++++------- NAMESPACE | 4 ++ NEWS | 4 ++ man/AbstractFileArray.Rd | 2 - man/FileMatrix.Rd | 2 - man/FileVector.Rd | 2 - man/R.huge-package.Rd | 2 - tests/FileByteVector.R | 5 ++- tests/FileMatrix,bug20070719.R | 41 ++++++++++++++++-------------- tests/FileMatrix,bug20070821.R | 55 +++++++++++++++++++++-------------------- 12 files changed, 87 insertions(+), 68 deletions(-)
Title: Data Analysis Toolbox for Dota2
Description: Data analysis functions for Dota2. Dota2 is a popular online game (see, e.g.
Author: Xiao Lei
Maintainer: Xiao Lei
Diff between RDota versions 1.1 dated 2015-01-26 and 1.2 dated 2015-02-22
DESCRIPTION | 10 +++++----- MD5 | 14 ++++++++------ NAMESPACE | 1 + R/globalonline.R |only R/quickpick.R | 6 +++--- data/antitable.rda |binary data/matchtable.rda |binary data/winrate.rda |binary man/globalonline.Rd |only 9 files changed, 17 insertions(+), 14 deletions(-)
Title: Circular Visualization in R
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu
Diff between circlize versions 0.2.2 dated 2015-01-30 and 0.2.3 dated 2015-02-22
DESCRIPTION | 21 +- MD5 | 154 +++++++++++---------- NAMESPACE | 107 +++++++-------- NEWS | 11 + R/chordDiagram.R | 28 +++ R/genomic.R | 133 ++++++------------ R/genomic_utils.R | 175 ++++++++++++++++++++++-- R/plot.R | 98 +++++++++++++ R/utils.R | 48 ++++++ inst/doc/circlize.R | 38 +++++ inst/doc/circlize.Rnw | 33 ++++ inst/doc/circlize.pdf |binary inst/doc/circular_phylogenetic_tree.pdf |binary inst/doc/circular_visualization_of_matrix.R | 47 ++++-- inst/doc/circular_visualization_of_matrix.Rnw | 56 ++++++- inst/doc/circular_visualization_of_matrix.pdf |binary inst/doc/draw_ideogram.R | 4 inst/doc/draw_ideogram.Rnw | 2 inst/doc/draw_ideogram.pdf |binary inst/doc/genomic_plot.R | 28 +-- inst/doc/genomic_plot.Rnw | 45 +++--- inst/doc/genomic_plot.pdf |binary inst/doc/interesting_graphics.pdf |binary inst/extdata/chromInfo.txt |only man/adjacencyList2Matrix.rd |only man/chordDiagram.rd | 118 ++++++++-------- man/circlize-package.rd | 176 +++++++++++++------------ man/circlize.rd | 67 ++++----- man/circos.axis.rd | 109 +++++++-------- man/circos.clear.rd | 50 +++---- man/circos.genomicDensity.rd | 89 ++++++------ man/circos.genomicInitialize.rd | 85 ++++++------ man/circos.genomicLines.rd | 107 +++++++-------- man/circos.genomicLink.rd | 87 ++++++------ man/circos.genomicPoints.rd | 85 ++++++------ man/circos.genomicPosTransformLines.rd | 85 ++++++------ man/circos.genomicRainfall.rd | 81 +++++------ man/circos.genomicRect.rd | 95 ++++++------- man/circos.genomicText.rd | 103 +++++++------- man/circos.genomicTrackPlotRegion.rd | 95 ++++++------- man/circos.info.rd | 69 ++++----- man/circos.initialize.rd | 83 +++++------ man/circos.initializeWithIdeogram.rd | 93 ++++++------- man/circos.lines.rd | 103 +++++++------- man/circos.link.rd | 107 +++++++-------- man/circos.par.rd | 92 ++++++------- man/circos.points.rd | 83 +++++------ man/circos.polygon.rd | 79 +++++------ man/circos.rect.rd | 83 +++++------ man/circos.text.rd | 93 ++++++------- man/circos.trackHist.rd | 101 +++++++------- man/circos.trackLines.rd | 95 ++++++------- man/circos.trackPlotRegion.rd | 121 ++++++++--------- man/circos.trackPoints.rd | 77 +++++----- man/circos.trackText.rd | 87 ++++++------ man/circos.updatePlotRegion.rd | 73 +++++----- man/colorRamp2.rd | 75 +++++----- man/cytoband.col.rd | 61 ++++---- man/draw.sector.rd | 83 +++++------ man/generateRandomBed.rd | 69 ++++----- man/genomicDensity.rd | 75 +++++----- man/get.all.sector.index.rd | 52 +++---- man/get.all.track.index.rd | 46 +++--- man/get.cell.meta.data.rd | 114 ++++++++-------- man/get.current.chromosome.rd | 52 +++---- man/getI.rd | 63 ++++---- man/highlight.chromosome.rd | 71 ++++------ man/highlight.sector.rd |only man/posTransform.default.rd | 67 ++++----- man/posTransform.text.rd | 75 +++++----- man/rainfallTransform.rd | 63 ++++---- man/rand_color.rd | 51 +++---- man/read.chromInfo.rd |only man/read.cytoband.rd | 93 ++++++------- man/reverse.circlize.rd | 73 +++++----- man/show.index.rd | 46 +++--- vignettes/circlize.Rnw | 33 ++++ vignettes/circular_visualization_of_matrix.Rnw | 56 ++++++- vignettes/draw_ideogram.Rnw | 2 vignettes/genomic_plot.Rnw | 45 +++--- 80 files changed, 2894 insertions(+), 2370 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply-imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE [aut], Alexander Robitzsch [ctb,cre],
Konrad Oberwimmer [ctb]
Maintainer: Alexander Robitzsch
Diff between BIFIEsurvey versions 1.1 dated 2014-11-22 and 1.2-6 dated 2015-02-22
DESCRIPTION | 32 MD5 | 45 - NAMESPACE | 24 R/BIFIE.correl.R | 2 R/BIFIE.data.R | 71 - R/BIFIE.data.jack.R | 29 R/BIFIE.derivedParameters.R | 3 R/BIFIE.linreg.R | 2 R/BIFIE.pathmodel.R |only R/BIFIE.twolevelreg.R |only R/coef.BIFIEsurvey.R | 14 R/extract.replicated.pars.R | 14 R/summary.BIFIE.data.R |only R/vcov.BIFIE.survey.R | 16 data/data.bifie01.rda |only data/datalist | 1 inst/NEWS | 51 - man/BIFIE.BIFIEdata2BIFIEcdata.Rd | 2 man/BIFIE.data.Rd | 52 + man/BIFIE.data.jack.Rd | 5 man/BIFIE.pathmodel.Rd |only man/BIFIE.twolevelreg.Rd |only man/BIFIEsurvey-package.Rd | 43 - man/data.bifie.Rd |only man/data.timss1.Rd | 58 + src/univar.cpp | 719 ++++++++++++++++++ src/univar_helpers.h | 1496 +++++++++++++++++++++++++++++++++++++- 27 files changed, 2490 insertions(+), 189 deletions(-)
Title: Unified Handling of Graphics Devices
Description: Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
Diff between R.devices versions 2.12.0 dated 2014-10-17 and 2.13.0 dated 2015-02-22
DESCRIPTION | 16 +++--- MD5 | 49 +++++++++---------- NAMESPACE | 1 NEWS | 22 ++++++++ R/devEval.R | 60 +++++++++++++++-------- R/devNew.R | 35 +++++++++++++ R/devOptions.R | 8 +-- R/deviceUtils.R | 5 - R/eps.R | 6 +- R/toNNN.R | 2 R/zzz.R | 2 build/vignette.rds |binary inst/doc/R.devices-overview.R | 20 +++---- inst/doc/R.devices-overview.pdf |binary inst/doc/R.devices-overview.tex.rsp | 42 ++++++++-------- man/R.devices-package.Rd | 7 +- man/devEval.Rd | 4 - man/eps.Rd | 4 + man/toNNN.Rd | 6 +- tests/DevEvalFileProduct.R | 7 ++ tests/devDump.R | 2 tests/devEval,error.R |only tests/devEval.R | 90 ++++++++++++++++++++++++++++++++++- tests/devList.R | 26 ++++++++-- tests/devTypeName.R | 37 ++++++++++++-- vignettes/R.devices-overview.tex.rsp | 42 ++++++++-------- 26 files changed, 363 insertions(+), 130 deletions(-)
Title: Easy Interface to Advanced PostgreSQL Features
Description: Allows ad hoc queries and reading and
writing data frames to and from a database.
Author: Timothy H. Keitt
Maintainer: Timothy H. Keitt
Diff between rpg versions 1.2 dated 2014-09-02 and 1.4 dated 2015-02-22
DESCRIPTION | 14 ++--- MD5 | 49 ++++++++++---------- NAMESPACE | 9 ++- R/RcppExports.R | 80 --------------------------------- R/rpg.R | 116 ++++++++++++++++++++++++++++++++++++++---------- R/utils.R | 71 +++++++++++++++++++++++------ man/async.Rd | 3 - man/connection-utils.Rd | 3 - man/connection.Rd | 3 - man/copy.Rd | 3 - man/cursor.Rd | 3 - man/format_for_send.Rd |only man/misc.Rd | 3 - man/prepare.Rd | 53 +++++++-------------- man/psql.Rd | 3 - man/query.Rd | 3 - man/rpg-package.Rd | 9 ++- man/stack.Rd | 3 - man/stow.Rd | 3 - man/table-info.Rd | 3 - man/table-io.Rd | 3 - man/tracing.Rd | 3 - man/transactions.Rd | 3 - src/RcppExports.cpp | 8 +-- src/rpg.cpp | 78 -------------------------------- src/rpg.h | 22 +++++++-- 26 files changed, 264 insertions(+), 287 deletions(-)