Title: Summaries and Population Structure Analyses of Haplotypic and
Genotypic Data
Diff between strataG versions 0.9.2 dated 2014-12-31 and 0.9.4 dated 2015-02-22
Description: A toolkit for analyzing stratified population genetic data.
Author: Eric Archer
Maintainer: Eric Archer
DESCRIPTION | 8 -
MD5 | 234 +++++++++++++++++-----------------
NAMESPACE | 2
R/gtypes.R | 20 +-
R/gtypes.default.R | 249 ++++++++++++++++++-------------------
R/is.gtypes.R | 2
R/jmodeltest.run.R | 39 +++--
R/merge.gtypes.R | 6
R/nucleotide.diversity.R | 13 +
R/pop.diff.test.R | 18 ++
man/align.clustal.Rd | 3
man/align.folder.Rd | 3
man/align.mafft.Rd | 3
man/allele.freq.format.Rd | 3
man/allele.freqs.Rd | 3
man/allele.split.Rd | 3
man/allelic.richness.Rd | 3
man/as.data.frame.gtypes.Rd | 3
man/as.dna.seq.Rd | 3
man/as.matrix.gtypes.Rd | 3
man/base.freqs.Rd | 3
man/bowhead.snp.position.Rd | 3
man/bowhead.snps.Rd | 3
man/check.genotypes.Rd | 3
man/check.seqs.Rd | 3
man/clumpp.run.Rd | 3
man/create.consensus.Rd | 3
man/decode.Rd | 3
man/diversity.Rd | 3
man/dolph.haps.Rd | 3
man/dolph.msats.Rd | 3
man/dolph.seqs.Rd | 3
man/dolph.strata.Rd | 3
man/dup.genotypes.Rd | 3
man/exptd.het.Rd | 3
man/fastsimcoal.run.Rd | 3
man/fisher.method.p.Rd | 3
man/fixed.differences.Rd | 3
man/fixed.sites.Rd | 3
man/fst.to.nm.Rd | 3
man/gelato.plot.Rd | 3
man/gelato.run.Rd | 3
man/gen.data.from.freq.Rd | 3
man/genepop.run.Rd | 3
man/gtype.struct.func.Rd | 3
man/gtypes.Rd | 21 +--
man/h.stats.Rd | 3
man/hap.freqs.Rd | 3
man/haplotype.likelihoods.Rd | 3
man/haplotypic.diversity.Rd | 3
man/hwe.genepop.Rd | 3
man/is.diploid.Rd | 3
man/is.gtype.struct.func.Rd | 3
man/iupac.code.Rd | 3
man/jack.hwe.Rd | 3
man/jmodeltest.run.Rd | 10 +
man/label.haplotypes.Rd | 3
man/linkage.genepop.Rd | 3
man/locus.names.Rd | 3
man/low.freq.subs.Rd | 3
man/merge.gtypes.Rd | 10 +
man/most.distant.sequences.Rd | 3
man/na.omit.gtypes.Rd | 3
man/nei.Da.Rd | 3
man/nucleotide.divergence.Rd | 3
man/nucleotide.diversity.Rd | 7 -
man/num.alleles.Rd | 3
man/num.alleles.shared.Rd | 3
man/num.gens.eq.Rd | 3
man/num.missing.Rd | 3
man/obsvd.het.Rd | 3
man/p.val.Rd | 3
man/pairwise.shared.loci.Rd | 3
man/pct.unique.haplotypes.Rd | 3
man/phase.run.Rd | 3
man/pop.diff.test.Rd | 19 ++
man/print.gtypeSummary.Rd | 3
man/read.arlequin.Rd | 3
man/read.fasta.Rd | 3
man/read.gen.data.Rd | 3
man/read.mega.Rd | 3
man/relabel.sequences.Rd | 3
man/restratify.Rd | 3
man/sequence.summary.Rd | 3
man/shared.haps.Rd | 3
man/sim.gamma.haps.Rd | 3
man/smry.by.locus.Rd | 3
man/smry.by.sample.Rd | 3
man/stat.chi2.Rd | 3
man/stat.d.jost.Rd | 3
man/stat.fst.Rd | 3
man/stat.fst.prime.Rd | 3
man/stat.gst.Rd | 3
man/stat.gst.dbl.prime.Rd | 3
man/stat.gst.prime.hedrick.Rd | 3
man/stat.gst.prime.nei.Rd | 3
man/stat.phist.Rd | 3
man/stopifnot.gtype.struct.func.Rd | 3
man/strata.pairs.Rd | 3
man/strata.split.Rd | 3
man/strataG-package.Rd | 3
man/structure.evanno.Rd | 3
man/structure.parse.q.mat.Rd | 3
man/structure.plot.Rd | 3
man/structure.run.Rd | 3
man/subset.gtypes.Rd | 3
man/summarize.loci.Rd | 3
man/summarize.sequences.Rd | 3
man/summary.gtypes.Rd | 3
man/tajimas.d.Rd | 3
man/theta.Rd | 3
man/ti.tv.ratio.Rd | 3
man/trim.ns.Rd | 3
man/valid.iupac.codes.Rd | 3
man/variable.sites.Rd | 3
man/wright.fst.Rd | 3
man/write.gtypes.Rd | 3
man/write.snapp.nexus.Rd | 3
118 files changed, 563 insertions(+), 404 deletions(-)
Title: Mixed Models, Particularly Spatial GLMMs
Diff between spaMM versions 1.4.1 dated 2014-11-08 and 1.5.1 dated 2015-02-22
Description: Implements a collection of functions for inference in mixed models. It was developed in particular for GLMMs with spatial correlations, but also fits models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph]
Maintainer: François Rousset
spaMM-1.4.1/spaMM/R/blockDiag.R |only
spaMM-1.4.1/spaMM/R/ordinaryKrigingCoefs.R |only
spaMM-1.4.1/spaMM/man/spaMM-internal-blockDiag.Rd |only
spaMM-1.5.1/spaMM/DESCRIPTION | 8
spaMM-1.5.1/spaMM/MD5 | 126 +--
spaMM-1.5.1/spaMM/NAMESPACE | 17
spaMM-1.5.1/spaMM/R/HLCor.R | 31
spaMM-1.5.1/spaMM/R/HLFactorList.R | 65 -
spaMM-1.5.1/spaMM/R/HLfit.R | 789 ++++++++++++-------
spaMM-1.5.1/spaMM/R/HLframes.R | 63 +
spaMM-1.5.1/spaMM/R/LR.R | 12
spaMM-1.5.1/spaMM/R/MakeCovEst.R |only
spaMM-1.5.1/spaMM/R/RcppExports.R | 8
spaMM-1.5.1/spaMM/R/auglinmodfit.R | 156 ++-
spaMM-1.5.1/spaMM/R/calc.p_v.R | 20
spaMM-1.5.1/spaMM/R/confint.R | 6
spaMM-1.5.1/spaMM/R/corrHLfit.R | 66 -
spaMM-1.5.1/spaMM/R/corrMM.LRT.R | 16
spaMM-1.5.1/spaMM/R/correlationFns.R | 77 +
spaMM-1.5.1/spaMM/R/extractors.R | 42 -
spaMM-1.5.1/spaMM/R/is.diagonal.R | 15
spaMM-1.5.1/spaMM/R/locoptim.R | 2
spaMM-1.5.1/spaMM/R/locoptimthroughsmooth.R | 12
spaMM-1.5.1/spaMM/R/mapMM.R | 377 +++++----
spaMM-1.5.1/spaMM/R/migraineLike.R | 51 -
spaMM-1.5.1/spaMM/R/plot.HLfit.R | 15
spaMM-1.5.1/spaMM/R/predict.R | 223 +++--
spaMM-1.5.1/spaMM/R/preprocess.R | 11
spaMM-1.5.1/spaMM/R/profile.R | 2
spaMM-1.5.1/spaMM/R/simulate.HL.R | 31
spaMM-1.5.1/spaMM/R/spaMM.data.R | 15
spaMM-1.5.1/spaMM/R/summary.HL.R | 16
spaMM-1.5.1/spaMM/R/utils.R | 10
spaMM-1.5.1/spaMM/inst/CITATION | 8
spaMM-1.5.1/spaMM/inst/NEWS.Rd |only
spaMM-1.5.1/spaMM/man/HLCor.Rd | 21
spaMM-1.5.1/spaMM/man/HLfit.Rd | 2
spaMM-1.5.1/spaMM/man/Matern.corr.Rd | 4
spaMM-1.5.1/spaMM/man/Predictor.Rd | 2
spaMM-1.5.1/spaMM/man/arabidopsis.Rd | 2
spaMM-1.5.1/spaMM/man/confint.Rd | 8
spaMM-1.5.1/spaMM/man/corMatern.Rd | 14
spaMM-1.5.1/spaMM/man/corrHLfit.Rd | 37
spaMM-1.5.1/spaMM/man/extractors.Rd | 17
spaMM-1.5.1/spaMM/man/fixed.LRT.Rd | 16
spaMM-1.5.1/spaMM/man/make.scaled.dist.Rd | 25
spaMM-1.5.1/spaMM/man/mapMM.Rd | 96 +-
spaMM-1.5.1/spaMM/man/options.Rd | 13
spaMM-1.5.1/spaMM/man/predict.Rd | 52 -
spaMM-1.5.1/spaMM/man/salamander.Rd | 6
spaMM-1.5.1/spaMM/man/scotlip.Rd | 2
spaMM-1.5.1/spaMM/man/seaMask.Rd | 6
spaMM-1.5.1/spaMM/man/seeds.Rd | 2
spaMM-1.5.1/spaMM/man/simulate.HLCor.Rd | 6
spaMM-1.5.1/spaMM/man/spaMM-internal-Rcpp.Rd | 3
spaMM-1.5.1/spaMM/man/spaMM-internal-migraine.Rd | 1
spaMM-1.5.1/spaMM/man/spaMM-internal.Rd | 21
spaMM-1.5.1/spaMM/man/spaMM.Rd | 29
spaMM-1.5.1/spaMM/man/spaMM.filled.contour.Rd | 27
spaMM-1.5.1/spaMM/man/spaMMcolors.Rd | 4
spaMM-1.5.1/spaMM/src/RcppExports.cpp | 31
spaMM-1.5.1/spaMM/src/spaMM_linear.cpp | 99 +-
spaMM-1.5.1/spaMM/tests/test-all.R |only
spaMM-1.5.1/spaMM/tests/testthat/test-HLfit.R | 2
spaMM-1.5.1/spaMM/tests/testthat/test-filled.mapMM.R | 11
spaMM-1.5.1/spaMM/tests/testthat/test-sp-nsp.R | 2
spaMM-1.5.1/spaMM/tests/testthat/test-spaMM.R | 4
67 files changed, 1797 insertions(+), 1058 deletions(-)
Title: A Framework for Comparing the Performance of MCMC Samplers
Diff between SamplerCompare versions 1.2.5 dated 2013-12-22 and 1.2.6 dated 2015-02-22
More information about SamplerCompare at CRAN
Description: A framework for running sets of MCMC samplers on sets of
distributions with a variety of tuning parameters, along with plotting
functions to visualize the results of those simulations. See sc-intro.pdf
for an introduction.
Author: Madeleine Thompson, except dchud.f and dchdd.f, which were written by
G. W. Stewart.
Maintainer: Madeleine Thompson
DESCRIPTION | 21 ++++++++++-----------
MD5 | 42 +++++++++++++++++++++---------------------
NAMESPACE | 3 ++-
R/00dist-util.R | 10 +++++-----
R/act.R | 2 +-
R/compare-samplers.R | 2 +-
R/distributions.R | 4 +++-
build/vignette.rds |binary
inst/doc/glue.Rnw | 6 +++---
inst/doc/glue.pdf |binary
inst/doc/sc-intro.Rnw | 2 +-
inst/doc/sc-intro.pdf |binary
man/SamplerCompare-package.Rd | 16 ++++++++--------
man/compare.samplers.Rd | 4 ++--
man/dist-class.Rd | 4 ++--
man/make.c.dist.Rd | 2 +-
man/make.cone.dist.Rd | 2 +-
man/make.dist.Rd | 2 +-
man/make.multimodal.dist.Rd | 2 +-
man/make.mv.gamma.dist.Rd | 2 +-
vignettes/glue.Rnw | 6 +++---
vignettes/sc-intro.Rnw | 2 +-
22 files changed, 68 insertions(+), 66 deletions(-)
Permanent link
Title: Analysis of Parent-Specific DNA Copy Numbers
Diff between PSCBS versions 0.43.0 dated 2014-06-09 and 0.44.0 dated 2015-02-22
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson
PSCBS-0.43.0/PSCBS/R/PairedPSCBS.BOOT,DEPRECATED.R |only
PSCBS-0.44.0/PSCBS/DESCRIPTION | 20 +++++------
PSCBS-0.44.0/PSCBS/MD5 | 34 ++++++++++----------
PSCBS-0.44.0/PSCBS/NAMESPACE | 6 ++-
PSCBS-0.44.0/PSCBS/NEWS | 12 ++++++-
PSCBS-0.44.0/PSCBS/R/AbstractCBS.PRUNE.R | 2 -
PSCBS-0.44.0/PSCBS/R/PairedPSCBS.BOOT,DEFUNCT.R |only
PSCBS-0.44.0/PSCBS/R/PairedPSCBS.estimateDeltaLOH.R | 2 -
PSCBS-0.44.0/PSCBS/R/PairedPSCBS.estimateKappa.R | 2 -
PSCBS-0.44.0/PSCBS/R/prememoize.R | 2 -
PSCBS-0.44.0/PSCBS/build/vignette.rds |binary
PSCBS-0.44.0/PSCBS/inst/doc/CBS.R | 5 +-
PSCBS-0.44.0/PSCBS/inst/doc/CBS.pdf |binary
PSCBS-0.44.0/PSCBS/inst/doc/CBS.tex.rsp | 14 ++++----
PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.R | 5 +-
PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.pdf |binary
PSCBS-0.44.0/PSCBS/inst/doc/PairedPSCBS.tex.rsp | 17 +++++-----
PSCBS-0.44.0/PSCBS/vignettes/CBS.tex.rsp | 14 ++++----
PSCBS-0.44.0/PSCBS/vignettes/PairedPSCBS.tex.rsp | 17 +++++-----
19 files changed, 89 insertions(+), 63 deletions(-)
Title: Mazama Science Spatial Data Download and Utility Functions
Diff between MazamaSpatialUtils versions 0.1.2 dated 2015-02-11 and 0.2.1 dated 2015-02-22
More information about MazamaSpatialUtils at CRAN
Description: A suite of conversion scripts to create internally standardized
spatial polygons dataframes. Utility scripts use these datasets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Will Leahy [aut],
Henry Nguyen [aut]
Maintainer: Jonathan Callahan
MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/CountryTable.Rd |only
MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/StateTable.Rd |only
MazamaSpatialUtils-0.1.2/MazamaSpatialUtils/man/TimezoneTable.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/DESCRIPTION | 15
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/MD5 | 116 ++++---
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/NAMESPACE | 7
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/MazamaSpatialUtils.R | 151 +++-------
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertGADM.R |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertLayer.R | 9
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertNaturalEarthAdm1.R | 85 +++--
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertTMWorldBorders.R | 45 +-
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertTMWorldBordersSimple.R | 51 +--
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertUSCensusCounties.R | 43 +-
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertUSGSHUC8.R |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertWikipediaTimezoneTable.R | 20 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/convertWorldTimezones.R | 29 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountry.R | 16 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountryCode.R | 18 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getCountryName.R | 18 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getSpatialData.R | 7
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getState.R | 13
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getStateCode.R | 17 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getStateName.R | 13
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getTimezone.R | 10
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getUSCounty.R | 11
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/getVariable.R |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/installSpatialData.R | 14
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/loadSpatialData.R | 5
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/R/organizePolygons.R |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/data/SimpleCountries.RData |binary
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/data/SimpleTimezones.RData |binary
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/inst/doc/introduction.html | 19 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 1
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/SpatialDataDir.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToCode.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToCountry.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/codeToState.Rd | 4
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertGADM.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertLayer.Rd | 9
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 15
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertTMWorldBorders.Rd | 11
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd | 11
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertUSCensusCounties.Rd | 11
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertUSGSHUC8.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertWikipediaTimezoneTable.Rd | 7
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/convertWorldTimezones.Rd | 11
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/countryToCode.Rd | 4
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountry.Rd | 15
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountryCode.Rd | 15
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getCountryName.Rd | 17 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getSpatialData.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getSpatialDataDir.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getState.Rd | 12
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getStateCode.Rd | 14
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getStateName.Rd | 12
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getTimezone.Rd | 10
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getUSCounty.Rd | 8
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/getVariable.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/initializeSpatialData.Rd | 17 -
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/installSpatialData.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/loadSpatialData.Rd | 2
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/organizePolygons.Rd |only
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/setSpatialDataDir.Rd | 6
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/man/stateToCode.Rd | 8
MazamaSpatialUtils-0.2.1/MazamaSpatialUtils/tests/testthat/test1.R | 4
65 files changed, 499 insertions(+), 487 deletions(-)
Permanent link
Title: Statistical Estimation of Game-Theoretic Models
Diff between games versions 1.1-1 dated 2014-01-17 and 1.1.2 dated 2015-02-22
Description: Provides estimation and analysis functions for
strategic statistical models.
Author: Curtis S. Signorino [aut],
Brenton Kenkel [aut, cre]
Maintainer: Brenton Kenkel
games-1.1-1/games/NEWS |only
games-1.1-1/games/R/helpers.r |only
games-1.1.2/games/DESCRIPTION | 14 +--
games-1.1.2/games/MD5 | 101 ++++++++++++++---------
games-1.1.2/games/NAMESPACE | 2
games-1.1.2/games/R/checkFormulas.r |only
games-1.1.2/games/R/checkLocalID.r |only
games-1.1.2/games/R/convergenceCriterion.r |only
games-1.1.2/games/R/doc.r | 17 ---
games-1.1.2/games/R/egame12.r | 48 -----------
games-1.1.2/games/R/egame122.r | 33 -------
games-1.1.2/games/R/egame123.r | 21 ----
games-1.1.2/games/R/finiteProbs.r |only
games-1.1.2/games/R/gameBoot.r |only
games-1.1.2/games/R/games.r | 26 +-----
games-1.1.2/games/R/getGameVcov.r |only
games-1.1.2/games/R/intersectAll.r |only
games-1.1.2/games/R/latexTable.r | 16 ---
games-1.1.2/games/R/makeFormulas.r | 86 -------------------
games-1.1.2/games/R/makeUtils.r |only
games-1.1.2/games/R/makeVarNames.r |only
games-1.1.2/games/R/nonnest.r | 38 --------
games-1.1.2/games/R/predProbs.r | 98 ++--------------------
games-1.1.2/games/R/profile.r | 25 -----
games-1.1.2/games/R/svalsFromProfile.r |only
games-1.1.2/games/R/ultimatum.r | 43 +++------
games-1.1.2/games/inst/examples |only
games-1.1.2/games/man/LW.Rd | 4
games-1.1.2/games/man/Mode.Rd | 14 +--
games-1.1.2/games/man/data_122.Rd | 2
games-1.1.2/games/man/data_123.Rd | 2
games-1.1.2/games/man/data_ult.Rd | 2
games-1.1.2/games/man/egame12.Rd | 121 ++++++++++++----------------
games-1.1.2/games/man/egame122.Rd | 118 +++++++++++----------------
games-1.1.2/games/man/egame123.Rd | 108 +++++++++++-------------
games-1.1.2/games/man/games-package.Rd | 6 -
games-1.1.2/games/man/latexTable.Rd | 47 +++++-----
games-1.1.2/games/man/leblang2003.Rd | 28 ++++--
games-1.1.2/games/man/makeFormulas.Rd | 31 +++----
games-1.1.2/games/man/plot.predProbs.Rd | 55 ++++++------
games-1.1.2/games/man/plot.profile.game.Rd | 13 +--
games-1.1.2/games/man/predProbs.Rd | 59 ++++++-------
games-1.1.2/games/man/predict.game.Rd | 24 ++---
games-1.1.2/games/man/print.game.Rd | 6 -
games-1.1.2/games/man/print.summary.game.Rd | 9 +-
games-1.1.2/games/man/profile.game.Rd | 55 ++++++------
games-1.1.2/games/man/student_offers.Rd | 2
games-1.1.2/games/man/summary.game.Rd | 10 +-
games-1.1.2/games/man/ultimatum.Rd | 84 ++++++++-----------
games-1.1.2/games/man/vuong.Rd | 50 +++++------
games-1.1.2/games/man/war1800.Rd | 2
games-1.1.2/games/tests |only
52 files changed, 539 insertions(+), 881 deletions(-)
Title: Toolkit of Helper Functions to Pre-Process Amplification Data
Diff between chipPCR versions 0.0.8-3 dated 2014-09-29 and 0.0.8-6 dated 2015-02-22
Description: A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. The package contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experimental nucleic acid amplification systems (VideoScan HCU, capillary convective PCR (ccPCR)) and commercial systems are included. Amplification curves were generated by helicase dependent amplification (HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used.
Author: Stefan Roediger [cre, aut],
Michal Burdukiewicz [aut],
Konstantin A. Blagodatskikh [ctb]
Maintainer: Stefan Roediger
chipPCR-0.0.8-3/chipPCR/man/chipPCR.sp.Rd |only
chipPCR-0.0.8-6/chipPCR/CHANGELOG | 18
chipPCR-0.0.8-6/chipPCR/DESCRIPTION | 40
chipPCR-0.0.8-6/chipPCR/MD5 | 179
chipPCR-0.0.8-6/chipPCR/R/CPP.R | 8
chipPCR-0.0.8-6/chipPCR/R/MFIaggr.R | 5
chipPCR-0.0.8-6/chipPCR/R/classes.R | 217
chipPCR-0.0.8-6/chipPCR/R/effcalc.R | 28
chipPCR-0.0.8-6/chipPCR/R/linreg.R |only
chipPCR-0.0.8-6/chipPCR/R/smoother.R | 4
chipPCR-0.0.8-6/chipPCR/R/th.cyc.R | 66
chipPCR-0.0.8-6/chipPCR/README.md | 4
chipPCR-0.0.8-6/chipPCR/build/vignette.rds |binary
chipPCR-0.0.8-6/chipPCR/data/C126EG595.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C126EG685.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C127EGHP.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C17.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C54.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C60.amp.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C60.melt.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C67.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C81.rda |binary
chipPCR-0.0.8-6/chipPCR/data/C85.rda |binary
chipPCR-0.0.8-6/chipPCR/data/CD74.rda |binary
chipPCR-0.0.8-6/chipPCR/data/CD75.rda |binary
chipPCR-0.0.8-6/chipPCR/data/Eff1000.rda |binary
chipPCR-0.0.8-6/chipPCR/data/Eff625.rda |binary
chipPCR-0.0.8-6/chipPCR/data/Eff750.rda |binary
chipPCR-0.0.8-6/chipPCR/data/Eff875.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_60.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_69.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMCFX96_meltcurve.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_595.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_685.rda |binary
chipPCR-0.0.8-6/chipPCR/data/VIMiQ5_melt.rda |binary
chipPCR-0.0.8-6/chipPCR/data/capillaryPCR.rda |binary
chipPCR-0.0.8-6/chipPCR/inst/CITATION |only
chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.R | 411 -
chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.Rnw | 4813 +++++-------
chipPCR-0.0.8-6/chipPCR/inst/doc/chipPCR.pdf |binary
chipPCR-0.0.8-6/chipPCR/man/AmpSim.Rd | 20
chipPCR-0.0.8-6/chipPCR/man/AmpSim.gui.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/C126EG595.Rd | 22
chipPCR-0.0.8-6/chipPCR/man/C126EG685.Rd | 24
chipPCR-0.0.8-6/chipPCR/man/C127EGHP.Rd | 87
chipPCR-0.0.8-6/chipPCR/man/C17.Rd | 22
chipPCR-0.0.8-6/chipPCR/man/C54.Rd | 2
chipPCR-0.0.8-6/chipPCR/man/C60.amp.Rd | 10
chipPCR-0.0.8-6/chipPCR/man/C60.melt.Rd | 10
chipPCR-0.0.8-6/chipPCR/man/C67.Rd | 10
chipPCR-0.0.8-6/chipPCR/man/C81.Rd | 12
chipPCR-0.0.8-6/chipPCR/man/C85.Rd | 175
chipPCR-0.0.8-6/chipPCR/man/CD74.Rd | 50
chipPCR-0.0.8-6/chipPCR/man/CD75.Rd | 8
chipPCR-0.0.8-6/chipPCR/man/CPP.Rd | 62
chipPCR-0.0.8-6/chipPCR/man/Eff1000.Rd | 2
chipPCR-0.0.8-6/chipPCR/man/Eff625.Rd | 2
chipPCR-0.0.8-6/chipPCR/man/Eff750.Rd | 2
chipPCR-0.0.8-6/chipPCR/man/Eff875.Rd | 2
chipPCR-0.0.8-6/chipPCR/man/MFIaggr.Rd | 4
chipPCR-0.0.8-6/chipPCR/man/MFIaggr.gui.Rd | 13
chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_60.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_69.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/VIMCFX96_meltcurve.Rd | 8
chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_595.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_685.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/VIMiQ5_melt.Rd | 8
chipPCR-0.0.8-6/chipPCR/man/amptest-class.Rd | 1
chipPCR-0.0.8-6/chipPCR/man/amptester.Rd | 9
chipPCR-0.0.8-6/chipPCR/man/amptester.gui.Rd | 11
chipPCR-0.0.8-6/chipPCR/man/bg.max.Rd | 103
chipPCR-0.0.8-6/chipPCR/man/chipPCR-package.Rd | 13
chipPCR-0.0.8-6/chipPCR/man/chipPCR.datasets.Rd | 49
chipPCR-0.0.8-6/chipPCR/man/effcalc.Rd | 11
chipPCR-0.0.8-6/chipPCR/man/fixNA.Rd | 12
chipPCR-0.0.8-6/chipPCR/man/humanrater.Rd | 9
chipPCR-0.0.8-6/chipPCR/man/inder.Rd | 13
chipPCR-0.0.8-6/chipPCR/man/lm.coefs.Rd | 4
chipPCR-0.0.8-6/chipPCR/man/normalizer.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/plot-bg.Rd | 3
chipPCR-0.0.8-6/chipPCR/man/plot-der.Rd | 6
chipPCR-0.0.8-6/chipPCR/man/plot-eff.Rd | 11
chipPCR-0.0.8-6/chipPCR/man/plot-refMFI.Rd | 17
chipPCR-0.0.8-6/chipPCR/man/plotCurves.Rd | 6
chipPCR-0.0.8-6/chipPCR/man/refMFI-class.Rd | 14
chipPCR-0.0.8-6/chipPCR/man/rounder.Rd | 4
chipPCR-0.0.8-6/chipPCR/man/smoother.Rd | 18
chipPCR-0.0.8-6/chipPCR/man/th.cyc.Rd | 8
chipPCR-0.0.8-6/chipPCR/vignettes/chipPCR.Rnw | 4813 +++++-------
chipPCR-0.0.8-6/chipPCR/vignettes/datdf.RData |binary
chipPCR-0.0.8-6/chipPCR/vignettes/natbib.bst |only
chipPCR-0.0.8-6/chipPCR/vignettes/natbib.sty |only
chipPCR-0.0.8-6/chipPCR/vignettes/roediger-burdukiewicz.bib | 4270 ++++------
93 files changed, 7421 insertions(+), 8416 deletions(-)
Title: R Commander
Diff between Rcmdr versions 2.1-6 dated 2015-02-03 and 2.1-7 dated 2015-02-22
Description:
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox
DESCRIPTION | 8 ++--
MD5 | 12 +++---
NEWS | 6 +++
inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary
inst/po/zh_CN |only
man/Rcmdr-package.Rd | 5 +-
po/R-ca.po | 69 ++++++++++++++++++--------------------
po/R-zh_CN.po |only
8 files changed, 53 insertions(+), 47 deletions(-)
Title: Lattice Graphics
Diff between lattice versions 0.20-29 dated 2014-04-04 and 0.20-30 dated 2015-02-22
Description: Lattice is a powerful and elegant high-level data
visualization system, with an emphasis on multivariate data, that is
sufficient for typical graphics needs, and is also flexible enough
to handle most nonstandard requirements. See ?Lattice for an
introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
DESCRIPTION | 8
MD5 | 72 ++--
R/bwplot.R | 16 -
R/cloud.R | 6
R/densityplot.R | 5
R/histogram.R | 3
R/interaction.R | 2
R/layout.R | 2
R/legend.R | 2
R/levelplot.R | 3
R/miscellaneous.R | 17 -
R/panels.R | 35 --
R/parallel.R | 4
R/print.trellis.R | 51 ---
R/qq.R | 4
R/qqmath.R | 4
R/scales.R | 2
R/settings.R | 496 +++++++++++++++----------------
R/splom.R | 4
R/xyplot.R | 3
data/barley.rda |binary
data/environmental.rda |binary
data/ethanol.rda |binary
data/melanoma.rda |binary
data/singer.rda |binary
inst/po/de/LC_MESSAGES/R-lattice.mo |binary
inst/po/en@quot/LC_MESSAGES/R-lattice.mo |binary
inst/po/fr/LC_MESSAGES/R-lattice.mo |binary
inst/po/ko/LC_MESSAGES/R-lattice.mo |binary
inst/po/pl/LC_MESSAGES/R-lattice.mo |binary
man/xyplot.Rd | 5
po/R-de.po | 11
po/R-en@quot.po | 11
po/R-fr.po | 11
po/R-ko.po | 274 ++++++++---------
po/R-lattice.pot | 9
po/R-pl.po | 15
37 files changed, 513 insertions(+), 562 deletions(-)
Title: Methods for Accessing Huge Amounts of Data [deprecated]
Diff between R.huge versions 0.8.0 dated 2014-02-26 and 0.9.0 dated 2015-02-22
Description: DEPRECATED. Do not start building new projects based on this package. Cross-platform alternatives are the following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix (Bioconductor). The main usage of it was inside the aroma.affymetrix package. (The package currently provides a class representing a matrix where the actual data is stored in a binary format on the local file system. This way the size limit of the data is set by the file system and not the memory.)
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
.Rinstignore |only
DESCRIPTION | 18 +++++++------
MD5 | 20 +++++++-------
NAMESPACE | 4 ++
NEWS | 4 ++
man/AbstractFileArray.Rd | 2 -
man/FileMatrix.Rd | 2 -
man/FileVector.Rd | 2 -
man/R.huge-package.Rd | 2 -
tests/FileByteVector.R | 5 ++-
tests/FileMatrix,bug20070719.R | 41 ++++++++++++++++--------------
tests/FileMatrix,bug20070821.R | 55 +++++++++++++++++++++--------------------
12 files changed, 87 insertions(+), 68 deletions(-)
Title: Data Analysis Toolbox for Dota2
Diff between RDota versions 1.1 dated 2015-01-26 and 1.2 dated 2015-02-22
Description: Data analysis functions for Dota2. Dota2 is a popular online game (see, e.g.
Author: Xiao Lei
Maintainer: Xiao Lei
DESCRIPTION | 10 +++++-----
MD5 | 14 ++++++++------
NAMESPACE | 1 +
R/globalonline.R |only
R/quickpick.R | 6 +++---
data/antitable.rda |binary
data/matchtable.rda |binary
data/winrate.rda |binary
man/globalonline.Rd |only
9 files changed, 17 insertions(+), 14 deletions(-)
Title: Circular Visualization in R
Diff between circlize versions 0.2.2 dated 2015-01-30 and 0.2.3 dated 2015-02-22
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 21 +-
MD5 | 154 +++++++++++----------
NAMESPACE | 107 +++++++--------
NEWS | 11 +
R/chordDiagram.R | 28 +++
R/genomic.R | 133 ++++++------------
R/genomic_utils.R | 175 ++++++++++++++++++++++--
R/plot.R | 98 +++++++++++++
R/utils.R | 48 ++++++
inst/doc/circlize.R | 38 +++++
inst/doc/circlize.Rnw | 33 ++++
inst/doc/circlize.pdf |binary
inst/doc/circular_phylogenetic_tree.pdf |binary
inst/doc/circular_visualization_of_matrix.R | 47 ++++--
inst/doc/circular_visualization_of_matrix.Rnw | 56 ++++++-
inst/doc/circular_visualization_of_matrix.pdf |binary
inst/doc/draw_ideogram.R | 4
inst/doc/draw_ideogram.Rnw | 2
inst/doc/draw_ideogram.pdf |binary
inst/doc/genomic_plot.R | 28 +--
inst/doc/genomic_plot.Rnw | 45 +++---
inst/doc/genomic_plot.pdf |binary
inst/doc/interesting_graphics.pdf |binary
inst/extdata/chromInfo.txt |only
man/adjacencyList2Matrix.rd |only
man/chordDiagram.rd | 118 ++++++++--------
man/circlize-package.rd | 176 +++++++++++++------------
man/circlize.rd | 67 ++++-----
man/circos.axis.rd | 109 +++++++--------
man/circos.clear.rd | 50 +++----
man/circos.genomicDensity.rd | 89 ++++++------
man/circos.genomicInitialize.rd | 85 ++++++------
man/circos.genomicLines.rd | 107 +++++++--------
man/circos.genomicLink.rd | 87 ++++++------
man/circos.genomicPoints.rd | 85 ++++++------
man/circos.genomicPosTransformLines.rd | 85 ++++++------
man/circos.genomicRainfall.rd | 81 +++++------
man/circos.genomicRect.rd | 95 ++++++-------
man/circos.genomicText.rd | 103 +++++++-------
man/circos.genomicTrackPlotRegion.rd | 95 ++++++-------
man/circos.info.rd | 69 ++++-----
man/circos.initialize.rd | 83 +++++------
man/circos.initializeWithIdeogram.rd | 93 ++++++-------
man/circos.lines.rd | 103 +++++++-------
man/circos.link.rd | 107 +++++++--------
man/circos.par.rd | 92 ++++++-------
man/circos.points.rd | 83 +++++------
man/circos.polygon.rd | 79 +++++------
man/circos.rect.rd | 83 +++++------
man/circos.text.rd | 93 ++++++-------
man/circos.trackHist.rd | 101 +++++++-------
man/circos.trackLines.rd | 95 ++++++-------
man/circos.trackPlotRegion.rd | 121 ++++++++---------
man/circos.trackPoints.rd | 77 +++++-----
man/circos.trackText.rd | 87 ++++++------
man/circos.updatePlotRegion.rd | 73 +++++-----
man/colorRamp2.rd | 75 +++++-----
man/cytoband.col.rd | 61 ++++----
man/draw.sector.rd | 83 +++++------
man/generateRandomBed.rd | 69 ++++-----
man/genomicDensity.rd | 75 +++++-----
man/get.all.sector.index.rd | 52 +++----
man/get.all.track.index.rd | 46 +++---
man/get.cell.meta.data.rd | 114 ++++++++--------
man/get.current.chromosome.rd | 52 +++----
man/getI.rd | 63 ++++----
man/highlight.chromosome.rd | 71 ++++------
man/highlight.sector.rd |only
man/posTransform.default.rd | 67 ++++-----
man/posTransform.text.rd | 75 +++++-----
man/rainfallTransform.rd | 63 ++++----
man/rand_color.rd | 51 +++----
man/read.chromInfo.rd |only
man/read.cytoband.rd | 93 ++++++-------
man/reverse.circlize.rd | 73 +++++-----
man/show.index.rd | 46 +++---
vignettes/circlize.Rnw | 33 ++++
vignettes/circular_visualization_of_matrix.Rnw | 56 ++++++-
vignettes/draw_ideogram.Rnw | 2
vignettes/genomic_plot.Rnw | 45 +++---
80 files changed, 2894 insertions(+), 2370 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Diff between BIFIEsurvey versions 1.1 dated 2014-11-22 and 1.2-6 dated 2015-02-22
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply-imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE [aut], Alexander Robitzsch [ctb,cre],
Konrad Oberwimmer [ctb]
Maintainer: Alexander Robitzsch
DESCRIPTION | 32
MD5 | 45 -
NAMESPACE | 24
R/BIFIE.correl.R | 2
R/BIFIE.data.R | 71 -
R/BIFIE.data.jack.R | 29
R/BIFIE.derivedParameters.R | 3
R/BIFIE.linreg.R | 2
R/BIFIE.pathmodel.R |only
R/BIFIE.twolevelreg.R |only
R/coef.BIFIEsurvey.R | 14
R/extract.replicated.pars.R | 14
R/summary.BIFIE.data.R |only
R/vcov.BIFIE.survey.R | 16
data/data.bifie01.rda |only
data/datalist | 1
inst/NEWS | 51 -
man/BIFIE.BIFIEdata2BIFIEcdata.Rd | 2
man/BIFIE.data.Rd | 52 +
man/BIFIE.data.jack.Rd | 5
man/BIFIE.pathmodel.Rd |only
man/BIFIE.twolevelreg.Rd |only
man/BIFIEsurvey-package.Rd | 43 -
man/data.bifie.Rd |only
man/data.timss1.Rd | 58 +
src/univar.cpp | 719 ++++++++++++++++++
src/univar_helpers.h | 1496 +++++++++++++++++++++++++++++++++++++-
27 files changed, 2490 insertions(+), 189 deletions(-)
Title: Unified Handling of Graphics Devices
Diff between R.devices versions 2.12.0 dated 2014-10-17 and 2.13.0 dated 2015-02-22
Description: Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
DESCRIPTION | 16 +++---
MD5 | 49 +++++++++----------
NAMESPACE | 1
NEWS | 22 ++++++++
R/devEval.R | 60 +++++++++++++++--------
R/devNew.R | 35 +++++++++++++
R/devOptions.R | 8 +--
R/deviceUtils.R | 5 -
R/eps.R | 6 +-
R/toNNN.R | 2
R/zzz.R | 2
build/vignette.rds |binary
inst/doc/R.devices-overview.R | 20 +++----
inst/doc/R.devices-overview.pdf |binary
inst/doc/R.devices-overview.tex.rsp | 42 ++++++++--------
man/R.devices-package.Rd | 7 +-
man/devEval.Rd | 4 -
man/eps.Rd | 4 +
man/toNNN.Rd | 6 +-
tests/DevEvalFileProduct.R | 7 ++
tests/devDump.R | 2
tests/devEval,error.R |only
tests/devEval.R | 90 ++++++++++++++++++++++++++++++++++-
tests/devList.R | 26 ++++++++--
tests/devTypeName.R | 37 ++++++++++++--
vignettes/R.devices-overview.tex.rsp | 42 ++++++++--------
26 files changed, 363 insertions(+), 130 deletions(-)
Title: Easy Interface to Advanced PostgreSQL Features
Diff between rpg versions 1.2 dated 2014-09-02 and 1.4 dated 2015-02-22
Description: Allows ad hoc queries and reading and
writing data frames to and from a database.
Author: Timothy H. Keitt
Maintainer: Timothy H. Keitt
DESCRIPTION | 14 ++---
MD5 | 49 ++++++++++----------
NAMESPACE | 9 ++-
R/RcppExports.R | 80 ---------------------------------
R/rpg.R | 116 ++++++++++++++++++++++++++++++++++++++----------
R/utils.R | 71 +++++++++++++++++++++++------
man/async.Rd | 3 -
man/connection-utils.Rd | 3 -
man/connection.Rd | 3 -
man/copy.Rd | 3 -
man/cursor.Rd | 3 -
man/format_for_send.Rd |only
man/misc.Rd | 3 -
man/prepare.Rd | 53 +++++++--------------
man/psql.Rd | 3 -
man/query.Rd | 3 -
man/rpg-package.Rd | 9 ++-
man/stack.Rd | 3 -
man/stow.Rd | 3 -
man/table-info.Rd | 3 -
man/table-io.Rd | 3 -
man/tracing.Rd | 3 -
man/transactions.Rd | 3 -
src/RcppExports.cpp | 8 +--
src/rpg.cpp | 78 --------------------------------
src/rpg.h | 22 +++++++--
26 files changed, 264 insertions(+), 287 deletions(-)