Title: Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
Diff between crrstep versions 2014-07.16 dated 2014-07-17 and 2015-2.1 dated 2015-02-23
Description: Performs forward and backwards stepwise regression for the Proportional subdistribution hazards model in competing risks (Fine & Gray 1999). Procedure uses AIC, BIC and BICcr as selection criteria. BICcr has a penalty of k = log(n*), where n* is the number of primary events.
Author: Ravi Varadhan & Deborah Kuk
Maintainer: Ravi Varadhan
DESCRIPTION | 14 ++++-----
MD5 | 8 ++---
R/crrstep.r | 88 ++++++++++++++++++++++++++++++++++-----------------------
inst/NEWS.Rd | 9 +++++
man/crrstep.Rd | 2 -
5 files changed, 74 insertions(+), 47 deletions(-)
Title: Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Diff between calmate versions 0.11.0 dated 2013-10-17 and 0.12.0 dated 2015-02-23
Description: A multi-array post-processing method of allele-specific copy-number estimates (ASCNs).
Author: Maria Ortiz [aut, ctb],
Ander Aramburu [ctb],
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut, ctb],
Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson
calmate-0.11.0/calmate/inst/NEWS |only
calmate-0.11.0/calmate/inst/testScripts/publications/CalMaTe/R |only
calmate-0.11.0/calmate/inst/testScripts/publications/CalMaTe/dataSets |only
calmate-0.12.0/calmate/DESCRIPTION | 30 ++++-----
calmate-0.12.0/calmate/MD5 | 33 +++-------
calmate-0.12.0/calmate/NAMESPACE | 4 -
calmate-0.12.0/calmate/NEWS |only
calmate-0.12.0/calmate/R/000.R | 2
calmate-0.12.0/calmate/R/zzz.R | 11 +--
calmate-0.12.0/calmate/man/CalMaTeCalibration.Rd | 4 -
calmate-0.12.0/calmate/man/calmate-package.Rd | 4 -
calmate-0.12.0/calmate/man/calmateByThetaAB.array.Rd | 2
calmate-0.12.0/calmate/man/calmateByTotalAndFracB.array.Rd | 2
calmate-0.12.0/calmate/man/fitCalMaTe.matrix.Rd | 2
calmate-0.12.0/calmate/man/fitCalMaTeInternal.Rd | 2
calmate-0.12.0/calmate/tests/calmateByTotalAndFracB.R |only
calmate-0.12.0/calmate/tests/thetaAB2TotalAndFracB.R |only
17 files changed, 46 insertions(+), 50 deletions(-)
Title: Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Diff between ACNE versions 0.7.0 dated 2013-10-18 and 0.8.0 dated 2015-02-23
Description: A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
Author: Maria Ortiz [aut],
Henrik Bengtsson [aut, cre, cph],
Angel Rubio [aut]
Maintainer: Henrik Bengtsson
ACNE-0.7.0/ACNE/inst/NEWS |only
ACNE-0.8.0/ACNE/DESCRIPTION | 28 +++++++++--------
ACNE-0.8.0/ACNE/MD5 | 23 +++++++-------
ACNE-0.8.0/ACNE/NAMESPACE | 7 ++++
ACNE-0.8.0/ACNE/NEWS |only
ACNE-0.8.0/ACNE/R/000.R | 1
ACNE-0.8.0/ACNE/R/SnpNmfFit.plot.R | 2 -
ACNE-0.8.0/ACNE/R/pseudoinverse.R | 8 ++---
ACNE-0.8.0/ACNE/R/robustWInit.R | 53 +++++++++++++++++++++++++---------
ACNE-0.8.0/ACNE/R/zzz.R | 11 +++----
ACNE-0.8.0/ACNE/man/NmfPlm.Rd | 4 +-
ACNE-0.8.0/ACNE/man/NmfSnpPlm.Rd | 4 +-
ACNE-0.8.0/ACNE/man/fitSnpNmfArray.Rd | 18 +++++++----
ACNE-0.8.0/ACNE/tests |only
14 files changed, 102 insertions(+), 57 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Diff between miceadds versions 1.0 dated 2014-11-07 and 1.1-1 dated 2015-02-23
Description:
Contains some auxiliary functions for multiple imputation which
complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch
DESCRIPTION | 28 +++++----
MD5 | 92 +++++++++++++++---------------
NAMESPACE | 3 -
R/datalist2mids.R | 56 +++++++++++++++---
R/load.data.R | 10 ++-
R/mice.impute.2l.plausible.values.R | 61 +++++++++++++-------
R/micombine.cor.R | 6 +-
R/mids2datlist.R | 4 +
R/save.data.R | 30 ++++++++--
R/write.mice.imputation.R | 15 -----
data/data.allison.gssexp.rda |binary
data/data.allison.hip.rda |binary
data/data.allison.usnews.rda |binary
data/data.enders.depression.rda |binary
data/data.enders.eatingattitudes.rda |binary
data/data.enders.employee.rda |binary
data/data.internet.rda |binary
data/data.largescale.rda |binary
data/data.ma01.rda |binary
data/data.ma02.rda |binary
data/data.ma03.rda |binary
data/data.ma04.rda |binary
data/data.ma05.rda |binary
data/data.smallscale.rda |binary
inst/NEWS | 19 +++++-
man/Reval.Rd | 4 -
man/Rhat.mice.Rd | 8 +-
man/Rsessinfo.Rd | 4 -
man/data.allison.Rd | 30 +++++-----
man/datalist2mids.Rd | 50 ++++++++--------
man/grep.vec.Rd | 16 ++---
man/index.dataframe.Rd | 20 +++---
man/ma.scale2.Rd | 12 ++--
man/mice.1chain.Rd | 71 +++++++++++------------
man/mice.impute.2l.plausible.values.Rd | 99 +++++++++++++++++++++++++++++++--
man/miceadds-package.Rd | 18 +++---
man/micombine.F.Rd | 8 +-
man/micombine.cor.Rd | 16 ++---
man/output.format1.Rd | 4 -
man/pca.covridge.Rd | 20 +++---
man/round2.Rd | 40 ++++++-------
man/save.data.Rd | 6 +-
man/scan.vector.Rd | 6 +-
man/str_C.expand.grid.Rd | 8 +-
man/sumpreserving.rounding.Rd | 24 ++++----
man/systime.Rd | 6 +-
man/tw.imputation.Rd | 20 +++---
47 files changed, 496 insertions(+), 318 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Diff between RRreg versions 0.2.0 dated 2014-11-18 and 0.3.0 dated 2015-02-23
Description: Univariate and multivariate methods to analyze
randomized response (RR) survey designs (e.g., Warner, S. L. (1965).
Randomized response: A survey technique for eliminating evasive answer
bias. Journal of the American Statistical Association, 60, 63–69).
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression and as
predictors in a linear regression. For simulation and bootstrap purposes,
RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck
DESCRIPTION | 10 -
MD5 | 70 ++++++-------
NAMESPACE | 4
NEWS | 9 +
R/RRcor.R | 4
R/RRgen.R | 4
R/RRlin.R | 49 ++++-----
R/RRlin.ll.R | 4
R/RRlog.CDM.R | 9 -
R/RRlog.FR.R | 4
R/RRlog.Kuk.R | 5
R/RRlog.Mangat.R | 4
R/RRlog.R | 246 +++++++++++++++++++++++++++++-----------------
R/RRlog.SLD.R | 4
R/RRlog.UQTknown.R | 6 -
R/RRlog.UQTunknown.R | 4
R/RRlog.Warner.R | 4
R/RRreg-package.R | 6 -
R/RRsimu.R | 267 +++++++++++++++++++++++++-------------------------
R/RRuni.R | 40 +++++--
R/RRuni.models.R | 2
R/powerplot.R | 15 +-
build/vignette.rds |binary
inst/doc/RRreg.R | 6 -
inst/doc/RRreg.Rmd | 6 -
inst/doc/RRreg.html | 144 +++++++++++++-------------
man/RRcor.Rd | 5
man/RRgen.Rd | 7 -
man/RRlin.Rd | 19 ++-
man/RRlog.Rd | 25 ++--
man/RRreg-package.Rd | 9 -
man/RRsimu.Rd | 21 ++-
man/RRuni.Rd | 36 +++++-
man/plot.powerplot.Rd |only
man/powerplot.Rd | 5
man/predict.RRlog.Rd |only
vignettes/RRreg.Rmd | 6 -
37 files changed, 601 insertions(+), 458 deletions(-)
Title: R Interface to SDMX Web Services
Diff between RJSDMX versions 1.2 dated 2014-11-07 and 1.3 dated 2015-02-23
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: http://sdmx.org .
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco
DESCRIPTION | 15 ++++---
MD5 | 17 ++++----
NAMESPACE | 1
R/SdmxClient.R | 32 ++++++++++-----
R/TSConverter.R | 88 +++++++++++++++++++++++++++++-------------
R/onLoad.R | 2
inst/configuration.properties | 3 -
inst/java/SDMX.jar |binary
man/addProvider.Rd | 6 ++
man/sdmxdf.Rd |only
10 files changed, 112 insertions(+), 52 deletions(-)
Title: Power/Sample Size Calculation for Mediation Analysis
Diff between powerMediation versions 0.1.7 dated 2013-11-09 and 0.2.3 dated 2015-02-23
More information about powerMediation at CRAN
Description: Functions to
calculate power and sample size for testing
(1) mediation effects;
(2) the slope in a simple linear regression;
(3) odds ratio in a simple logistic regression;
(4) mean change for longitudinal study with 2 time points;
and (5) interaction effect in 2-way ANOVA.
Author: Weiliang Qiu
Maintainer: Weiliang Qiu
DESCRIPTION | 28 +++++++++++++---------------
INDEX | 6 ++++++
MD5 | 20 ++++++++++++--------
NAMESPACE | 4 ++++
NEWS | 23 +++++++++++++++++++++++
R/powerLogisticsReg.R | 2 +-
R/powerLongitudinal.R | 41 +++++++++++++++++++++++++++++++++++++++--
R/power_interaction.R |only
man/SSizeLogisticCon.Rd | 1 +
man/powerInteract.Rd |only
man/powerLogisticCon.Rd | 4 ++--
man/powerLong.multiTime.Rd |only
man/ssLong.multiTime.Rd |only
13 files changed, 101 insertions(+), 28 deletions(-)
Permanent link
Title: Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Diff between fitdistrplus versions 1.0-3 dated 2014-12-12 and 1.0-4 dated 2015-02-23
Description: Extends the fitdistr function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds. In addition to maximum likelihood estimation method the package provides moment matching, quantile matching and maximum goodness-of-fit estimation methods (available only for non-censored data).
Author: Marie Laure Delignette-Muller [aut, cre],
Christophe Dutang [aut],
Regis Pouillot [ctb],
Jean-Baptiste Denis [ctb]
Maintainer: Marie Laure Delignette-Muller
DESCRIPTION | 12
MD5 | 44 +-
R/plotdistcens.R | 2
inst/CITATION | 35 -
inst/NEWS | 4
inst/doc/paper2JSS.Rnw | 2
inst/doc/paper2JSS.pdf |binary
man/bootdist.Rd | 6
man/bootdistcens.Rd | 6
man/cdfcompcens.Rd | 207 ++++-----
man/descdist.Rd | 268 ++++++------
man/fitdist.Rd | 1031 ++++++++++++++++++++++++------------------------
man/fitdistcens.Rd | 501 +++++++++++------------
man/gofstat.Rd | 373 ++++++++---------
man/graphcomp.Rd | 403 +++++++++---------
man/mgedist.Rd | 315 +++++++-------
man/mledist.Rd | 375 ++++++++---------
man/mmedist.Rd | 306 +++++++-------
man/plotdist.Rd | 245 +++++------
man/plotdistcens.Rd | 222 +++++-----
man/qmedist.Rd | 270 ++++++------
man/quantiles.Rd | 310 +++++++-------
vignettes/paper2JSS.Rnw | 2
23 files changed, 2516 insertions(+), 2423 deletions(-)
Title: Cognitive Diagnosis Modeling
Diff between CDM versions 4.1 dated 2014-12-17 and 4.2-12 dated 2015-02-23
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model, the general diagnostic model (GDM),
the multidimensional linear compensatory item response model and
the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch
DESCRIPTION | 13 -
MD5 | 125 ++++++++------
NAMESPACE | 57 ++++++
R/IRT.compareModels.R | 40 ++++
R/IRT.data.R |only
R/IRT.derivedParameters.R |only
R/IRT.expectedCounts.R |only
R/IRT.irfprob.R | 7
R/IRT.irfprobPlot.R |only
R/IRT.jackknife.R |only
R/IRT.jackknife.gdina.R |only
R/IRT.likelihood.R | 5
R/IRT.predict.R |only
R/IRT.repDesign.R |only
R/cdi.kli.R | 6
R/din.R | 23 +-
R/equivalent.skillclasses.R | 74 --------
R/gdina.R | 289 ++++++++++++++++++++++------------
R/gdina.partable.R |only
R/gdm.R | 53 +-----
R/gdm_algorithm.R | 10 -
R/jkestimates.R |only
R/logLik_CDM.R | 8
R/mcdina.R | 8
R/modelfit.cor.R | 10 -
R/modelfit.cor2.R | 21 +-
R/predict.CDM.R |only
R/print.summary.din.R | 6
R/skill.cor.R | 73 +++++++-
R/slca.R | 4
R/summary.din.R | 3
R/summary.gdina.R | 23 +-
data/data.Students.rda |binary
data/data.cdm01.rda |binary
data/data.cdm02.rda |binary
data/data.dcm.rda |binary
data/data.dtmr.rda |binary
data/data.ecpe.rda |binary
data/data.fraction1.rda |binary
data/data.fraction2.rda |binary
data/data.hr.rda |binary
data/data.jang.rda |binary
data/data.melab.rda |binary
data/data.mg.rda |binary
data/data.pgdina.rda |binary
data/data.sda6.rda |binary
data/data.timss03.G8.su.rda |binary
data/data.timss07.G4.lee.rda |binary
data/data.timss11.G4.AUT.part.rda |only
data/data.timss11.G4.AUT.rda |only
data/fraction.subtraction.data.rda |binary
data/fraction.subtraction.qmatrix.rda |binary
data/sim.dina.rda |binary
data/sim.dino.rda |binary
data/sim.qmatrix.rda |binary
inst/NEWS | 37 ++++
man/CDM-package.Rd | 131 ++++++++-------
man/IRT.compareModels.Rd | 10 +
man/IRT.data.Rd |only
man/IRT.expectedCounts.Rd |only
man/IRT.irfprob.Rd | 5
man/IRT.irfprobPlot.Rd |only
man/IRT.jackknife.Rd |only
man/IRT.modelfit.Rd | 3
man/IRT.repDesign.Rd |only
man/data.dcm.Rd | 2
man/data.timss11.G4.AUT.Rd |only
man/din.deterministic.Rd | 2
man/din.equivalent.class.Rd | 4
man/gdina.Rd | 53 ++++--
man/personfit.appropriateness.Rd | 2
man/predict.Rd |only
man/skill.cor.Rd | 24 +-
src/irt_predict_c.cpp |only
74 files changed, 702 insertions(+), 429 deletions(-)
Title: Construction, Simulation and Analysis of Boolean Networks
Diff between BoolNet versions 2.0.2 dated 2014-12-11 and 2.1.0 dated 2015-02-23
Description: Provides methods to reconstruct and generate synchronous,
asynchronous, and probabilistic Boolean networks, and to
analyze and visualize attractors in Boolean networks.
Author: Christoph Müssel [aut],
Martin Hopfensitz [aut],
Dao Zhou [aut],
Hans A. Kestler [aut, cre],
Armin Biere [ctb] (contributed PicoSAT code),
Troy D. Hanson [ctb] (contributed uthash macros)
Maintainer: Hans A. Kestler
BoolNet-2.0.2/BoolNet/src/boolean_network.c |only
BoolNet-2.1.0/BoolNet/DESCRIPTION | 28
BoolNet-2.1.0/BoolNet/MD5 | 91
BoolNet-2.1.0/BoolNet/R/attractorsToLaTeX.R | 38
BoolNet-2.1.0/BoolNet/R/fixGenes.R | 2
BoolNet-2.1.0/BoolNet/R/getAttractors.R | 66
BoolNet-2.1.0/BoolNet/R/helpers.R | 2
BoolNet-2.1.0/BoolNet/R/loadBioTapestry.R | 2
BoolNet-2.1.0/BoolNet/R/loadNetwork.R | 2
BoolNet-2.1.0/BoolNet/R/loadSBML.R | 2
BoolNet-2.1.0/BoolNet/R/parseBooleanFunction.R | 3
BoolNet-2.1.0/BoolNet/R/plotAttractors.R | 32
BoolNet-2.1.0/BoolNet/R/plotSequence.R | 12
BoolNet-2.1.0/BoolNet/R/sequenceToLaTeX.R | 10
BoolNet-2.1.0/BoolNet/R/simulateSymbolicModel.R | 90
BoolNet-2.1.0/BoolNet/R/stateTransition.R | 2
BoolNet-2.1.0/BoolNet/R/symbolicToTruthTable.R | 2
BoolNet-2.1.0/BoolNet/R/truthTableToSymbolic.R | 2
BoolNet-2.1.0/BoolNet/build/vignette.rds |binary
BoolNet-2.1.0/BoolNet/inst/NEWS.Rd | 13
BoolNet-2.1.0/BoolNet/inst/doc/BoolNet_package_vignette.R | 186
BoolNet-2.1.0/BoolNet/inst/doc/BoolNet_package_vignette.Snw | 106
BoolNet-2.1.0/BoolNet/inst/doc/BoolNet_package_vignette.pdf |binary
BoolNet-2.1.0/BoolNet/man/BoolNet-package.Rd | 15
BoolNet-2.1.0/BoolNet/man/attractorsToLaTeX.Rd | 8
BoolNet-2.1.0/BoolNet/man/getAttractors.Rd | 40
BoolNet-2.1.0/BoolNet/man/markovSimulation.Rd | 2
BoolNet-2.1.0/BoolNet/man/plotAttractors.Rd | 8
BoolNet-2.1.0/BoolNet/man/plotNetworkWiring.Rd | 2
BoolNet-2.1.0/BoolNet/man/plotPBNTransitions.Rd | 2
BoolNet-2.1.0/BoolNet/man/plotSequence.Rd | 11
BoolNet-2.1.0/BoolNet/man/reconstructNetwork.Rd | 2
BoolNet-2.1.0/BoolNet/man/sequenceToLaTeX.Rd | 12
BoolNet-2.1.0/BoolNet/man/simulateSymbolicModel.Rd | 66
BoolNet-2.1.0/BoolNet/man/testNetworkProperties.Rd | 48
BoolNet-2.1.0/BoolNet/src/attractor_info.c |only
BoolNet-2.1.0/BoolNet/src/attractor_info.h |only
BoolNet-2.1.0/BoolNet/src/attractor_search_interface.c |only
BoolNet-2.1.0/BoolNet/src/boolean_network.h |only
BoolNet-2.1.0/BoolNet/src/common.c | 2
BoolNet-2.1.0/BoolNet/src/common.h | 50
BoolNet-2.1.0/BoolNet/src/picosat.c |only
BoolNet-2.1.0/BoolNet/src/picosat.h |only
BoolNet-2.1.0/BoolNet/src/probabilistic_boolean_network.c | 42
BoolNet-2.1.0/BoolNet/src/sat_search.c |only
BoolNet-2.1.0/BoolNet/src/sat_search.h |only
BoolNet-2.1.0/BoolNet/src/statespace_search.c |only
BoolNet-2.1.0/BoolNet/src/statespace_search.h |only
BoolNet-2.1.0/BoolNet/src/symbolic_network.c |only
BoolNet-2.1.0/BoolNet/src/symbolic_network.h |only
BoolNet-2.1.0/BoolNet/src/symbolic_simulator.c | 2628 +++++------
BoolNet-2.1.0/BoolNet/vignettes/BoolNet_package_vignette.Snw | 106
BoolNet-2.1.0/BoolNet/vignettes/BoolNet_package_vignette.bib | 18
53 files changed, 2004 insertions(+), 1749 deletions(-)
Title: SYMPHONY in R
Diff between Rsymphony versions 0.1-18 dated 2015-01-10 and 0.1-19 dated 2015-02-23
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/symphony.R | 27 ++++++++++++++++-----------
3 files changed, 21 insertions(+), 16 deletions(-)
Title: R Commander Plug-In for University Level Applied Statistics
Diff between RcmdrPlugin.NMBU versions 1.8.0 dated 2015-01-22 and 1.8.0.1 dated 2015-02-23
More information about RcmdrPlugin.NMBU at CRAN
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland
DESCRIPTION | 17 -
MD5 | 14
NAMESPACE | 4
R/NMBU.GUI.Models.R | 2
R/NMBU.GUI.Statistics.R | 600 ++++++++++++++++++++--------------------
R/NMBU.Utilities.R | 1
inst/etc/menus.txt | 10
man/RcmdrPlugin.NMBU-package.Rd | 1
8 files changed, 333 insertions(+), 316 deletions(-)
Permanent link
Title: Biostatistics Utilities for Nephrology
Diff between nephro versions 1.0 dated 2013-01-30 and 1.1 dated 2015-02-23
Description: Set of functions to estimate the Glomerular Filtration Rate (GFR) using different biomarkers and other phenotypes of interest for nephrology.
Author: Cristian Pattaro
Maintainer: Cristian Pattaro
nephro-1.0/nephro/R/nephro.r |only
nephro-1.1/nephro/ChangeLog |only
nephro-1.1/nephro/DESCRIPTION | 15 +++-----
nephro-1.1/nephro/MD5 | 28 ++++++++-------
nephro-1.1/nephro/NAMESPACE | 2 -
nephro-1.1/nephro/R/nephro.R |only
nephro-1.1/nephro/man/CG.Rd |only
nephro-1.1/nephro/man/CKDEpi.creat.Rd | 17 +++------
nephro-1.1/nephro/man/CKDEpi.creat.cys.Rd | 13 ++----
nephro-1.1/nephro/man/CKDEpi.cys.Rd | 14 +++----
nephro-1.1/nephro/man/MDRD4.Rd | 22 ++++-------
nephro-1.1/nephro/man/MDRD6.Rd | 20 ++++------
nephro-1.1/nephro/man/Stevens.creat.cys.Rd | 16 +++-----
nephro-1.1/nephro/man/Stevens.cys1.Rd | 26 ++++---------
nephro-1.1/nephro/man/Stevens.cys2.Rd | 22 +++--------
nephro-1.1/nephro/man/Virga.Rd | 37 ++++++++++++-------
nephro-1.1/nephro/man/nephro-package.Rd | 54 +++++++++++++++++++----------
17 files changed, 137 insertions(+), 149 deletions(-)
Title: Provides Access to Git Repositories
Diff between git2r versions 0.6 dated 2015-02-18 and 0.7 dated 2015-02-23
Description: Interface to the libgit2 library, which is a pure C
implementation of the Git core methods. Provides access to Git
repositories to extract data and running some basic git commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren
filter.h | 38
tmp/cranberry50814e554202/git2r-0.7/git2r/DESCRIPTION | 8
tmp/cranberry50814e554202/git2r-0.7/git2r/MD5 | 42 -
tmp/cranberry50814e554202/git2r-0.7/git2r/NEWS | 10
tmp/cranberry50814e554202/git2r-0.7/git2r/configure | 17
tmp/cranberry50814e554202/git2r-0.7/git2r/src/Makevars.in | 7
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/attr.c | 5
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/blob.c | 14
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/buffer.c | 14
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/buffer.h | 6
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/checkout.c | 136 ++-
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/crlf.c | 2
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/diff.c | 2
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/diff_driver.c | 9
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/diff_file.c | 2
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/filter.c | 416 +++++++---
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/filter.h | 13
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/include/git2/types.h | 9
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/integer.h | 2
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/pack.c | 11
tmp/cranberry50814e554202/git2r-0.7/git2r/src/libgit2/repository.c | 2
21 files changed, 565 insertions(+), 200 deletions(-)
Title: An R Plug-in for the Distributed Hydrological Model GEOtop
Diff between geotopbricks versions 1.3.5.4 dated 2014-05-22 and 1.3.6 dated 2015-02-23
Description: It analyzes raster maps and other information as input/output
files from the Hydrological Distributed Model GEOtop. It contains functions
and methods to import maps and other keywords from geotop.inpts file. Some
examples with simulation cases of GEOtop 2.0 are presented in the package.
Any information about the GEOtop Distributed Hydrological Model source code
is available on http://code.google.com/p/geotop/ or
https://github.com/se27xx/GEOtop. Technical details about the model are
available in Endrizzi et al, 2014
(http://www.geosci-model-dev.net/7/2831/2014/gmd-7-2831-2014.html).
Author: Emanuele Cordano, Daniele Andreis, Fabio Zottele
Maintainer: Emanuele Cordano
geotopbricks-1.3.5.4/geotopbricks/R/geotopbricks-package.R |only
geotopbricks-1.3.5.4/geotopbricks/man/geotopbricks-package.Rd |only
geotopbricks-1.3.6/geotopbricks/DESCRIPTION | 34 +++---
geotopbricks-1.3.6/geotopbricks/MD5 | 41 +++----
geotopbricks-1.3.6/geotopbricks/NAMESPACE | 1
geotopbricks-1.3.6/geotopbricks/R/aggregate.brick.at.depth.R | 2
geotopbricks-1.3.6/geotopbricks/R/bar.color.raster.R | 55 +++++++++-
geotopbricks-1.3.6/geotopbricks/R/brickFromOutput3DTensor.R | 7 -
geotopbricks-1.3.6/geotopbricks/R/declared.geotop.inpts.keywords.R | 18 ++-
geotopbricks-1.3.6/geotopbricks/R/geotopbrick_S3.R | 10 -
geotopbricks-1.3.6/geotopbricks/R/get.keyword.value.R | 45 +++++++-
geotopbricks-1.3.6/geotopbricks/R/listFromOutput3DTensor.R | 4
geotopbricks-1.3.6/geotopbricks/R/writeRasterxgeotop.R | 40 +++++++
geotopbricks-1.3.6/geotopbricks/data/bondone.rda |binary
geotopbricks-1.3.6/geotopbricks/inst/doc/examples/example.brickFromOutput3DTensor.R | 2
geotopbricks-1.3.6/geotopbricks/inst/doc/examples/example.time.aggragation.R |only
geotopbricks-1.3.6/geotopbricks/inst/rendena100 |only
geotopbricks-1.3.6/geotopbricks/man/bondone.Rd | 2
geotopbricks-1.3.6/geotopbricks/man/brickFromOutputSoil3DTensor.Rd | 12 +-
geotopbricks-1.3.6/geotopbricks/man/color.bar.raster.Rd | 26 ++++
geotopbricks-1.3.6/geotopbricks/man/declared.geotop.inpts.keywords.Rd | 7 +
geotopbricks-1.3.6/geotopbricks/man/listFromOutputSoil3DTensor.Rd | 10 -
geotopbricks-1.3.6/geotopbricks/man/writeRasterxGEOtop.Rd | 15 ++
23 files changed, 254 insertions(+), 77 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Diff between rfPermute versions 1.6.1 dated 2014-08-12 and 1.6.2 dated 2015-02-23
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed.
Author: Eric Archer
Maintainer: Eric Archer
DESCRIPTION | 16 ++++++++--------
MD5 | 32 ++++++++++++++++----------------
NAMESPACE | 13 +++++++------
R/plot.rfPermute.R | 4 ++--
R/plot.rp.importance.r | 17 ++++++++---------
R/rfPermute.R | 2 +-
R/rfPermute.default.R | 2 ++
R/rfPermute.formula.R | 3 +++
R/rp.importance.R | 7 +++++--
man/calc.imp.pval.Rd | 3 ++-
man/clean.rf.data.Rd | 3 ++-
man/plot.rfPermute.Rd | 5 +++--
man/plot.rp.importance.Rd | 5 +++--
man/proximity.plot.Rd | 3 ++-
man/rfPermute.Rd | 9 +++++----
man/rp.combine.Rd | 3 ++-
man/rp.importance.Rd | 9 ++++++---
17 files changed, 77 insertions(+), 59 deletions(-)
Title: Easy Handling of and Access to Files Organized in Structured
Directories
Diff between R.filesets versions 2.6.0 dated 2014-08-27 and 2.7.0 dated 2015-02-23
Description: A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterate such sets. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to be in an beta stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
DESCRIPTION | 20 +--
MD5 | 64 +++++-----
NAMESPACE | 12 +
NEWS | 22 +++
R/ChecksumFile.R | 11 +
R/GenericDataFileSet.PARALLEL.R | 9 -
R/GenericDataFileSet.R | 33 +++--
R/RDataFile.R |only
R/RDataFileSet.R |only
R/RdsFile.R | 1
inst/exData/dataSetA,original/1.2(a).txt | 26 ++--
inst/exData/dataSetA,original/11.2(a).txt | 26 ++--
inst/exData/dataSetA,original/fileF.txt | 26 ++--
inst/exData/dataSetA,original/fileFF.txt | 26 ++--
inst/exData/dataSetB/fileG,EOL.txt | 22 +--
inst/exData/dataSetB/fileG,noEOL.txt | 20 +--
man/FullNameInterface.Rd | 2
man/GenericDataFile.Rd | 2
man/GenericDataFileSet.Rd | 36 ++---
man/GenericTabularFile.Rd | 12 -
man/RDataFile.Rd |only
man/RDataFileSet.Rd |only
man/RdsFile.Rd | 1
man/TabularTextFile.Rd | 10 -
man/TabularTextFileSet.Rd | 2
man/getFile.GenericDataFileSet.Rd | 5
man/loadToEnv.Rd |only
tests/GenericDataFile.R | 17 ++
tests/GenericDataFileSet,dsApply.R | 18 +-
tests/GenericDataFileSet,sortBy.R | 42 +++---
tests/GenericDataFileSet.R | 8 -
tests/RdsFileSet.R | 2
tests/TabularTextFile,huge.R |only
tests/TabularTextFile.R | 184 +++++++++++++++---------------
tests/TabularTextFileSet.R | 146 ++++++++++++-----------
tests/VectorAndListAPI.R | 14 +-
36 files changed, 458 insertions(+), 361 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Diff between mixlm versions 1.0.8.1 dated 2015-01-31 and 1.0.8.3 dated 2015-02-23
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/statistics.R | 25 ++++++++++++++++++++++---
3 files changed, 28 insertions(+), 9 deletions(-)