New package wkb with initial version 0.1-0
Package: wkb
Type: Package
Title: Convert Between Spatial Objects and Well-Known Binary (WKB) Geometry
Version: 0.1-0
Imports: sp
Date: 2015-02-28
Author: TIBCO Software Inc.
Maintainer: Ian Cook
Description: Utility functions to convert between the Spatial classes specified by the package sp, and the well-known binary (WKB) representation for geometry specified by the Open Geospatial Consortium (OGC). Supports Spatial objects of class SpatialPoints, SpatialPointsDataFrame, SpatialLines, SpatialLinesDataFrame, SpatialPolygons, and SpatialPolygonsDataFrame. Supports WKB geometry types Point, LineString, Polygon, MultiPoint, MultiLineString, and MultiPolygon. Includes extensions to enable creation of maps with TIBCO Spotfire.
BugReports: https://github.com/ianmcook/wkb/issues
NeedsCompilation: no
License: BSD_3_clause + file LICENSE
Packaged: 2015-02-28 14:42:00 UTC; icook
Repository: CRAN
Date/Publication: 2015-02-28 17:45:05

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New package laketemps with initial version 0.5.1
Package: laketemps
Type: Package
Title: Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009
Version: 0.5.1
Date: 2015-02-28
Author: Jordan S Read
Maintainer: Jordan S Read
Description: Lake temperature records, metadata, and climate drivers for 291 global lakes during the time period 1985-2009. Temperature observations were collected using satellite and in situ methods. Climatic drivers and geomorphometric characteristics were also compiled and are included for each lake. Data are part of the associated publication from the Global Lake Temperature Collaboration project (http://www.laketemperature.org). See citation('laketemps') for dataset attribution.
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright. Data are part of the associated publication. See citation('laketemps') for dataset attribution.
BugReports: https://github.com/USGS-R/laketemps/issues
Depends: R (>= 3.0),
Imports: dplyr, reshape2
LazyLoad: yes
LazyData: no
Packaged: 2015-02-28 14:16:47 UTC; jread
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-28 17:44:57

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Package timma updated to version 1.2.1 with previous version 1.2.0 dated 2015-01-11

Title: Target Inhibition Interaction using Maximization and Minimization Averaging
Description: Prediction and ranking of drug combinations based on their drug-target interaction profiles and single-drug sensitivities in a given cancer cell line or patient-derived sample.
Author: Liye He, Krister Wennerberg, Tero Aittokallio and Jing Tang
Maintainer: Jing Tang

Diff between timma versions 1.2.0 dated 2015-01-11 and 1.2.1 dated 2015-02-28

 DESCRIPTION                           |   17 +++-----
 MD5                                   |   70 +++++++++++++++++-----------------
 NAMESPACE                             |    1 
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 R/drawGraph.R                         |   70 ++++++++++++++++++----------------
 R/drugRank.R                          |   27 ++++++-------
 R/normalizeSensitivity.R              |    2 
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 R/timma.R                             |   44 +++++++++------------
 build/vignette.rds                    |binary
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 data/tyner_interaction_multiclass.rda |binary
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 inst/doc/timma.pdf                    |binary
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 37 files changed, 139 insertions(+), 144 deletions(-)

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New package joint.Cox with initial version 1.0
Package: joint.Cox
Type: Package
Title: Penalized Likelihood Estimation under the Joint Cox Models Between TTP and OS for Meta-Analysis
Version: 1.0
Date: 2015-02-28
Author: Takeshi Emura
Maintainer: Takeshi Emura
Description: Perform regression analyses under the joint Cox proportional hazards model between TTP and OS for meta-analysis. The method is applicable for meta-analysis combining several studies or for cluster survival data.
License: GPL-2
Packaged: 2015-02-28 08:35:35 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-28 12:17:50

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Package rSPACE updated to version 1.1.0 with previous version 1.0.4 dated 2015-01-06

Title: Spatially-Explicit Power Analysis for Conservation and Ecology
Description: Conducts a spatially-explicit, simulation-based power analysis for detecting trends in population abundance through occupancy-based modeling. Applicable for evaluating monitoring designs in conservation and ecological settings.
Author: Martha Ellis, Jake Ivan, Jody Tucker, Mike Schwartz
Maintainer: Martha Ellis

Diff between rSPACE versions 1.0.4 dated 2015-01-06 and 1.1.0 dated 2015-02-28

 DESCRIPTION              |    8 ++++----
 MD5                      |   34 +++++++++++++++++-----------------
 R/ClickyBox.r            |    6 ++----
 R/Create_Landscapes.r    |    8 ++++++--
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 R/PlottingFunctions.r    |   12 +++++++++---
 R/Test_Samples.r         |   29 +++++++----------------------
 R/Test_file.r            |   23 +++++++++++++++++------
 R/checkParameters.R      |   20 +++++++++++++++-----
 R/createGrid.R           |   47 ++++++++++++++++++++++++++++++++---------------
 man/create.landscapes.Rd |   12 +++++++-----
 man/encounter.history.Rd |    6 ++++--
 man/enter.parameters.Rd  |    6 ++++--
 man/find.power.Rd        |    8 +++++---
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 man/rSPACE-package.Rd    |   16 ++++++++--------
 man/test_file.Rd         |    6 ++++--
 man/test_samples.Rd      |   35 ++++++++++++++++++++++++++++++-----
 18 files changed, 208 insertions(+), 111 deletions(-)

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Package hypervolume updated to version 1.2 with previous version 1.1.2 dated 2015-01-16

Title: High-Dimensional Kernel Density Estimation and Geometry Operations
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and negative feature detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder

Diff between hypervolume versions 1.1.2 dated 2015-01-16 and 1.2 dated 2015-02-28

 DESCRIPTION                |   10 +++----
 MD5                        |   10 +++----
 NAMESPACE                  |   11 +++++++-
 R/hypervolume_plot.R       |   58 +++++++++++++++++++++++++++++++++++++++++++--
 man/hypervolume-package.Rd |   38 -----------------------------
 man/plot.Hypervolume.Rd    |   43 +++++++++++++++++++++++----------
 6 files changed, 107 insertions(+), 63 deletions(-)

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Package fields updated to version 8.2-1 with previous version 7.1 dated 2014-05-16

Title: Tools for Spatial Data
Description: Fields is for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging and compact covariances for large data sets. The splines and Kriging methods are supporting by functions that can determine the smoothing parameter (nugget and sill variance) by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to function that also estimates the correlation scale (range). A major feature is that any covariance function implemented in R and following a simple fields format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details in addition to the manual pages. The commented source code can be viewed by expanding the source code .tar.gz file and looking in R subdirectory.
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka

Diff between fields versions 7.1 dated 2014-05-16 and 8.2-1 dated 2015-02-28

 fields-7.1/fields/R/Krig.R                                |only
 fields-8.2-1/fields/DESCRIPTION                           |   29 -
 fields-8.2-1/fields/MD5                                   |  137 ++++----
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 fields-8.2-1/fields/R/Krig.family.R                       |  110 ++-----
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 fields-8.2-1/fields/R/fitted.Krig.R                       |    2 
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 fields-8.2-1/fields/R/gcv.sreg.R                          |only
 fields-8.2-1/fields/R/image.family.R                      |  102 ++++++
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 fields-8.2-1/fields/tests/diag.multiply.test.Rout.save    |    8 
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 fields-8.2-1/fields/tests/misc.test.Rout.save             |    8 
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 fields-8.2-1/fields/tests/sreg.test.R                     |    6 
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 fields-8.2-1/fields/tests/vgram.test.Rout.save            |    8 
 77 files changed, 961 insertions(+), 915 deletions(-)

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Package ExtremeBounds updated to version 0.1.5 with previous version 0.1.4.2 dated 2014-11-18

Title: Extreme Bounds Analysis (EBA)
Description: An implementation of Extreme Bounds Analysis (EBA), a global sensitivity analysis that examines the robustness of determinants in regression models. The package supports both Leamer's and Sala-i-Martin's versions of EBA, and allows users to customize all aspects of the analysis.
Author: Marek Hlavac
Maintainer: Marek Hlavac

Diff between ExtremeBounds versions 0.1.4.2 dated 2014-11-18 and 0.1.5 dated 2015-02-28

 DESCRIPTION                  |    8 ++--
 MD5                          |   32 ++++++++--------
 NAMESPACE                    |    7 ++-
 R/ExtremeBounds-internal.R   |    4 +-
 build/vignette.rds           |binary
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 inst/ChangeLog               |    4 ++
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 man/hist.eba.Rd              |    4 +-
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 vignettes/ExtremeBounds.Rtex |   86 +++++++++++++++++++++++--------------------
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 vignettes/naive.pdf          |binary
 vignettes/sophisticated.pdf  |binary
 17 files changed, 184 insertions(+), 127 deletions(-)

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