Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Diff between randomForestSRC versions 1.6.0 dated 2015-01-12 and 1.6.1 dated 2015-03-04
More information about randomForestSRC at CRAN
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
DESCRIPTION | 10 +-
MD5 | 216 ++++++++++++++++++++++-----------------------
NAMESPACE | 8 +
R/data.utilities.R | 2
R/factor.utilities.R | 2
R/find.interaction.R | 2
R/generic.impute.rfsrc.R | 2
R/generic.predict.rfsrc.R | 4
R/impute.rfsrc.R | 2
R/max.subtree.R | 2
R/plot.competing.risk.R | 2
R/plot.rfsrc.R | 2
R/plot.survival.R | 2
R/plot.variable.R | 2
R/predict.rfsrc.R | 2
R/print.rfsrc.R | 2
R/rf2rfz.R | 2
R/rfsrc.R | 4
R/rfsrc.news.R | 2
R/rfsrcSyn.R | 2
R/stat.split.R | 2
R/utilities.R | 2
R/var.select.R | 2
R/vimp.R | 2
R/zzz.R | 2
configure.ac | 2
inst/NEWS | 13 +-
inst/doc/rsf-Rnews.pdf |binary
man/breast.Rd | 2
man/find.interaction.Rd | 6 -
man/follic.Rd | 2
man/impute.Rd | 5 -
man/max.subtree.Rd | 2
man/pbc.Rd | 2
man/plot.competing.risk.Rd | 2
man/plot.rfsrc.Rd | 2
man/plot.survival.Rd | 5 -
man/plot.variable.Rd | 2
man/predict.rfsrc.Rd | 10 +-
man/rf2rfz.Rd | 2
man/rfsrc.Rd | 15 ++-
man/rfsrcSyn.Rd | 2
man/stat.split.Rd | 2
man/var.select.Rd | 8 +
man/vimp.Rd | 8 +
man/wihs.Rd | 2
src/bootstrap.c | 2
src/bootstrap.h | 2
src/classification.c | 2
src/classification.h | 2
src/dataParser.c | 2
src/dataParser.h | 2
src/entry.c | 2
src/entry.h | 2
src/extern.h | 2
src/factor.h | 2
src/factorOps.c | 2
src/factorOps.h | 2
src/global.h | 2
src/importance.c | 2
src/importance.h | 2
src/impute.c | 2
src/impute.h | 2
src/node.h | 2
src/nodeOps.c | 2
src/nodeOps.h | 2
src/nrutil.c | 2
src/nrutil.h | 2
src/random.c | 2
src/random.h | 2
src/regression.c | 2
src/regression.h | 2
src/rfsrc.c | 2
src/rfsrc.h | 2
src/rfsrcUtil.c | 2
src/rfsrcUtil.h | 2
src/split.c | 2
src/split.h | 2
src/splitClas.c | 2
src/splitClas.h | 2
src/splitCustom.c | 2
src/splitCustom.h | 2
src/splitRegr.c | 2
src/splitRegr.h | 2
src/splitSurv.c | 2
src/splitSurv.h | 2
src/splitUspv.c | 2
src/splitUspv.h | 2
src/splitUtil.c | 2
src/splitUtil.h | 2
src/stack.c | 2
src/stack.h | 2
src/stackOutput.c | 2
src/stackOutput.h | 2
src/stackPreDefined.c | 2
src/stackPreDefined.h | 2
src/survival.c | 2
src/survival.h | 2
src/survivalE.c | 2
src/survivalE.h | 2
src/termOps.c | 2
src/termOps.h | 2
src/terminal.h | 2
src/trace.c | 2
src/trace.h | 2
src/tree.c | 2
src/tree.h | 2
src/treeUtil.c | 2
src/treeUtil.h | 2
109 files changed, 264 insertions(+), 238 deletions(-)
Permanent link
Title: Solve Systems of Nonlinear Equations
Diff between nleqslv versions 2.5 dated 2014-09-29 and 2.6 dated 2015-03-04
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian and
for specifying that a numerical Jacobian is banded.
Author: Berend Hasselman
Maintainer: Berend Hasselman
DESCRIPTION | 14 ++--
MD5 | 45 +++++++++------
NEWS | 17 ++++-
R/nleqslv.R | 2
inst |only
man/nleqslv-package.Rd | 2
man/nleqslv.Rd | 4 -
man/testnslv.Rd | 2
man/zznleqslv-iterationreport.Rd | 112 ++++++++++++++++++++++++++-------------
src/nwbrdn.f | 9 ++-
src/nwddlg.f | 2
src/nwmhlm.f | 2
src/nwnjac.f | 2
src/nwnleq.f | 3 +
src/nwnwtn.f | 9 ++-
src/nwout.c | 46 +++++++++-------
src/nwpdlg.f | 2
src/nwtrup.f | 6 ++
src/nwutil.f | 4 +
19 files changed, 185 insertions(+), 98 deletions(-)
Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Diff between MixGHD versions 1.3 dated 2014-12-22 and 1.4 dated 2015-03-04
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution.The first model MGHD is the classical mixture of generalized hyperbolic distributions. The MGHFA is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The MSGHD, mixture of multiple scaled generalized hyperbolic distributions. The cMSGHD is a MSGHD with convex contour plots. The MCGHD, mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora, Ryan P. Browne, Brian C. Franczak and Paul D. McNicholas.
Maintainer: Cristina Tortora
DESCRIPTION | 8 -
MD5 | 34 ++---
R/DA.R | 30 ++--
R/GHD.R | 304 +++++++++++++++++++++++++++++++++++++++++---------
R/MCGHD.R | 6
R/MGHD.R | 14 +-
R/MGHFA.R | 12 -
R/MSGHD.R | 11 +
R/Selection.R | 22 +--
R/cMSGHD.R | 11 +
man/DA.Rd | 6
man/MCGHD.Rd | 8 -
man/MGHD.Rd | 11 +
man/MGHFA.Rd | 22 ---
man/MSGHD.Rd | 6
man/MixGHD-package.Rd | 4
man/Selection.Rd | 7 -
man/cMSGHD.Rd | 6
18 files changed, 370 insertions(+), 152 deletions(-)
Title: Nonparametric Monotone Regression
Diff between monreg versions 0.1.2 dated 2013-02-15 and 0.1.3 dated 2015-03-04
Description: Estimates monotone regression and variance functions in a
nonparametric model.
Author: This version Kay Pilz and Steffanie Titoff. Earlier
developements by Holger Dette and Kay Pilz.
Maintainer: Scott Kostyshak
DESCRIPTION | 15 ++++++---------
MD5 | 8 ++++----
man/monreg.rd | 8 +++++++-
man/monvardiff.rd | 5 +++--
man/monvarresid.rd | 5 +++--
5 files changed, 23 insertions(+), 18 deletions(-)
Title: Kernel Based Regression Models
Diff between krm versions 2014.12-1 dated 2014-12-02 and 2015.3-4 dated 2015-03-04
Description: Implements several methods for testing the variance component parameter in regression models that contain kernel-based random effects, including a maximum of adjusted scores test. Several kernels are supported, including a profile hidden Markov model mutual information kernel for protein sequence.
Author: Youyi Fong
Maintainer: Youyi Fong
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/krm.most.R | 10 +++++-----
R/sim.liu.R | 4 ++--
man/krm.most.Rd | 10 ++++++++++
5 files changed, 26 insertions(+), 16 deletions(-)
Title: Companion Animal Population Management
Diff between capm versions 0.6.0 dated 2015-03-02 and 0.7.0 dated 2015-03-04
Description: Quantitative analysis to support companion animal population
management.
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero
DESCRIPTION | 14 ++---
MD5 | 40 ++++++++--------
NEWS | 4 +
R/CalculateGlobalSens.R | 2
R/CalculateLocalSens.R | 2
R/PlotGlobalSens.R | 2
R/PlotLocalSens.R | 6 +-
R/PlotModels.R | 32 ++++++-------
R/SetRanges.R | 2
R/SolveIASA.R | 110 ++++++++++++++++++++++-----------------------
R/SolveTC.R | 52 ++++++++++-----------
R/capm-package.R | 8 +--
man/CalculateGlobalSens.Rd | 2
man/CalculateLocalSens.Rd | 2
man/PlotGlobalSens.Rd | 2
man/PlotLocalSens.Rd | 6 +-
man/PlotModels.Rd | 10 ++--
man/SetRanges.Rd | 2
man/SolveIASA.Rd | 22 ++++-----
man/SolveTC.Rd | 16 +++---
man/capm-package.Rd | 8 +--
21 files changed, 174 insertions(+), 170 deletions(-)
Title: Tools for Creating D3 JavaScript Network Graphs from R
Diff between networkD3 versions 0.1.1 dated 2014-12-16 and 0.1.2.1 dated 2015-03-04
Description: Creates D3 JavaScript network, tree, dendrogram, and Sankey graphs
from R.
Author: Christopher Gandrud [aut, cre],
J.J. Allaire [aut],
B.W. Lewis [ctb],
Kevin Kuo [ctb]
Maintainer: Christopher Gandrud
DESCRIPTION | 22 ++++++++++++++++------
MD5 | 22 +++++++++++-----------
NEWS | 9 +++++++++
R/forceNetwork.R | 4 ++--
R/sankeyNetwork.R | 4 ++--
R/treeNetwork.R | 10 ++++------
README.md | 2 +-
inst/htmlwidgets/forceNetwork.yaml | 2 +-
inst/htmlwidgets/sankeyNetwork.yaml | 2 +-
inst/htmlwidgets/simpleNetwork.yaml | 2 +-
inst/htmlwidgets/treeNetwork.yaml | 2 +-
man/treeNetwork.Rd | 10 ++++------
12 files changed, 53 insertions(+), 38 deletions(-)
Title: Load Gap-Free Axon ABF2 Files
Diff between abf2 versions 0.7-0 dated 2013-07-19 and 0.7-1 dated 2015-03-04
Description: Loads ABF2 files containing gap-free data from electrophysiological recordings, as created by Axon Instruments/Molecular Devices software such as pClamp 10.
Author: Matthew Caldwell
Maintainer: Matthew Caldwell
DESCRIPTION | 12 +++---
MD5 | 6 +--
R/abf.R | 104 ++++++++++++++++++++++++++--------------------------
man/abf2-package.Rd | 2 -
4 files changed, 62 insertions(+), 62 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Diff between rNOMADS versions 2.1.2 dated 2015-01-16 and 2.1.3 dated 2015-03-04
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman
DESCRIPTION | 8 ++++----
MD5 | 5 +++--
R/GetDODS.R | 2 +-
inst |only
4 files changed, 8 insertions(+), 7 deletions(-)
Title: Download Aggregate Trial Information and Results from
ClinicalTrials.gov
Diff between rclinicaltrials versions 1.4 dated 2014-11-26 and 1.4.1 dated 2015-03-04
More information about rclinicaltrials at CRAN
Description: ClinicalTrials.gov is a registry and results database of publicly
and privately supported clinical studies of human participants conducted
around the world. Users can search for information about and results from
those trials. This provides a set of functions to interact with the search
and download features. Results are downloaded to temporary directories and
returned as R objects.
Author: Michael C Sachs
Maintainer: Michael C Sachs
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
NAMESPACE | 2 +-
NEWS | 6 ++++++
R/clinicaltrials_download.R | 29 +++++++++++++++++++----------
build/vignette.rds |binary
man/advanced_search_terms.Rd | 3 ++-
man/clinicaltrials_count.Rd | 3 ++-
man/clinicaltrials_download.Rd | 3 ++-
man/clinicaltrials_search.Rd | 3 ++-
man/gather_results.Rd | 3 ++-
man/parse_study_xml.Rd | 3 ++-
tests/testthat/test-download.R | 2 +-
13 files changed, 55 insertions(+), 34 deletions(-)
Permanent link
Title: Chi-Square Tests for Non-Parametric Functional Dependencies
Diff between FunChisq versions 2.0.1 dated 2015-02-24 and 2.0.2 dated 2015-03-04
Description: Statistical hypothesis testing methods for non-parametric functional dependencies based on chi-square statistics. These tests were designed to reveal causality based on evidence from non-parametric functional dependencies. They include an asymptotic non-constant functional chi-square test, an exact functional test, and a comparative functional chi-square test. The normalized functional chi-square test was used by the Best Performer NMSUSongLab in DREAM8 Breast Cancer Network Inference Challenges. These tests offer an advantage over regression analysis when a parametric functional form cannot be assumed.
Author: Yang Zhang, Hua Zhong, and Joe Song
Maintainer: Joe Song
DESCRIPTION | 8 +-
MD5 | 14 ++--
NEWS | 61 +++++++++++----------
inst/CITATION | 62 ++++++++++-----------
man/FunChisq-package.Rd | 11 +--
man/cp.fun.chisq.test.Rd | 14 ++--
man/fun.chisq.test.Rd | 27 +++++----
tests/testthat/test_FunChisq.R | 117 ++++++++++++++++++++---------------------
8 files changed, 161 insertions(+), 153 deletions(-)
Title: Automated Feature Selection from 'caret'
Diff between fscaret versions 0.9 dated 2015-01-11 and 0.9.3 dated 2015-03-04
Description: Automated feature selection using variety of models
provided by 'caret' package.
This work was funded by Poland-Singapore bilateral cooperation
project no 2/3/POL-SIN/2012.
Author: Jakub Szlek [aut, cre],
Aleksander Mendyk [ctb]
Maintainer: Jakub Szlek
DESCRIPTION | 26 +++++++------
MD5 | 32 ++++++++--------
R/classVarImp.R | 33 +++++++++++++++--
R/fscaret.R | 3 +
R/regVarImp.R | 37 ++++++++++++++++---
R/timeout.R | 39 ++++++++++++++------
data/funcClassPred.RData |binary
data/funcRegPred.RData |binary
inst/NEWS.Rd | 10 +++++
inst/doc/fscaret.R | 4 +-
inst/doc/fscaret.Rnw | 6 ++-
inst/doc/fscaret.pdf |binary
man/fscaret-package.Rd | 13 +++---
man/fscaret.Rd | 4 +-
man/regVarImp.Rd | 89 -----------------------------------------------
man/timeout.Rd | 50 ++++++++++++++++----------
vignettes/fscaret.Rnw | 6 ++-
17 files changed, 184 insertions(+), 168 deletions(-)
Title: Visualisation of Oceanographic Data and Model Output
Diff between OceanView versions 1.0.2 dated 2014-12-29 and 1.0.3 dated 2015-03-04
Description: Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output.
Author: Karline Soetaert
Maintainer: Karline Soetaert
OceanView |only
1 file changed
Title: Descriptive Statistics, Transition Plots, and More
Diff between Gmisc versions 1.0 dated 2015-01-04 and 1.1 dated 2015-03-04
Description:
Tools for making the descriptive "Table 1" used in medical articles,
a transition plot for showing changes between categories,
a method for variable selection based on the SVD,
Bézier lines with arrows complementing the ones in the 'grid' package,
and more.
Author: Max Gordon
Maintainer: Max Gordon
Gmisc-1.0/Gmisc/inst/doc/descriptives.R |only
Gmisc-1.0/Gmisc/inst/doc/descriptives.Rmd |only
Gmisc-1.0/Gmisc/inst/doc/descriptives.html |only
Gmisc-1.0/Gmisc/inst/examples/htmlTable_example.R |only
Gmisc-1.0/Gmisc/inst/examples/transitionPlot_example.R |only
Gmisc-1.0/Gmisc/man/getLines.Rd |only
Gmisc-1.0/Gmisc/man/getLinesWithArrow.Rd |only
Gmisc-1.0/Gmisc/man/rotateWidthAccAngle.Rd |only
Gmisc-1.0/Gmisc/man/rotateWidthAccVector.Rd |only
Gmisc-1.0/Gmisc/vignettes/descriptives.Rmd |only
Gmisc-1.1/Gmisc/DESCRIPTION | 16
Gmisc-1.1/Gmisc/MD5 | 111 +
Gmisc-1.1/Gmisc/NAMESPACE | 17
Gmisc-1.1/Gmisc/NEWS | 14
Gmisc-1.1/Gmisc/R/RcppExports.R |only
Gmisc-1.1/Gmisc/R/bezierArrowGradient.R | 516 +++----
Gmisc-1.1/Gmisc/R/bezierArrowSmpl.R | 264 +--
Gmisc-1.1/Gmisc/R/bezier_private_functions.R | 691 +++-------
Gmisc-1.1/Gmisc/R/descriptionStats.R | 8
Gmisc-1.1/Gmisc/R/getDescriptionStatsBy.R | 108 +
Gmisc-1.1/Gmisc/R/getPval.R |only
Gmisc-1.1/Gmisc/R/mergeDesc.R | 84 +
Gmisc-1.1/Gmisc/R/private_functions.R | 42
Gmisc-1.1/Gmisc/R/transitionClass.R |only
Gmisc-1.1/Gmisc/R/transitionClass_helpers.R |only
Gmisc-1.1/Gmisc/R/transitionPlot.R | 57
Gmisc-1.1/Gmisc/R/transitionPlot_helpers.R | 26
Gmisc-1.1/Gmisc/build/vignette.rds |binary
Gmisc-1.1/Gmisc/inst/doc/Descriptives.R |only
Gmisc-1.1/Gmisc/inst/doc/Descriptives.Rmd |only
Gmisc-1.1/Gmisc/inst/doc/Descriptives.html |only
Gmisc-1.1/Gmisc/inst/doc/Transition-class.R |only
Gmisc-1.1/Gmisc/inst/doc/Transition-class.Rmd |only
Gmisc-1.1/Gmisc/inst/doc/Transition-class.html |only
Gmisc-1.1/Gmisc/inst/doc/transitionPlot.R |only
Gmisc-1.1/Gmisc/inst/doc/transitionPlot.Rmd |only
Gmisc-1.1/Gmisc/inst/doc/transitionPlot.html |only
Gmisc-1.1/Gmisc/inst/examples/bezierArrowGradient_example.R | 25
Gmisc-1.1/Gmisc/inst/examples/getDescriptionStatsBy_example.R | 23
Gmisc-1.1/Gmisc/inst/include |only
Gmisc-1.1/Gmisc/man/Transition-class.Rd |only
Gmisc-1.1/Gmisc/man/bezierArrowGradient.Rd | 42
Gmisc-1.1/Gmisc/man/bezierArrowSmpl.Rd | 15
Gmisc-1.1/Gmisc/man/calculateLinesAndArrow.Rd |only
Gmisc-1.1/Gmisc/man/describeFactors.Rd | 8
Gmisc-1.1/Gmisc/man/describeMean.Rd | 8
Gmisc-1.1/Gmisc/man/describeMedian.Rd | 8
Gmisc-1.1/Gmisc/man/describeProp.Rd | 8
Gmisc-1.1/Gmisc/man/getAbsoluteWidth.Rd |only
Gmisc-1.1/Gmisc/man/getBezierAdj4Arrw.Rd |only
Gmisc-1.1/Gmisc/man/getDescriptionStatsBy.Rd | 51
Gmisc-1.1/Gmisc/man/getPval.Rd |only
Gmisc-1.1/Gmisc/man/gnrlBezierPoints.Rd |only
Gmisc-1.1/Gmisc/man/htmlTable_latex.Rd | 6
Gmisc-1.1/Gmisc/man/mergeDesc.Rd | 29
Gmisc-1.1/Gmisc/man/prPasteVec.Rd |only
Gmisc-1.1/Gmisc/man/prPushMarginViewport.Rd | 7
Gmisc-1.1/Gmisc/man/prTcPlotArrows.Rd |only
Gmisc-1.1/Gmisc/man/prTcPlotBoxColumn.Rd |only
Gmisc-1.1/Gmisc/man/prTcValidateAndPrepClr.Rd |only
Gmisc-1.1/Gmisc/man/prTpGetColors.Rd | 4
Gmisc-1.1/Gmisc/man/transitionPlot.Rd | 7
Gmisc-1.1/Gmisc/src |only
Gmisc-1.1/Gmisc/tests/cpp_tests |only
Gmisc-1.1/Gmisc/tests/performance |only
Gmisc-1.1/Gmisc/tests/testthat/test-bezier.R |only
Gmisc-1.1/Gmisc/tests/testthat/test-getDescriptionStats.R | 61
Gmisc-1.1/Gmisc/tests/testthat/test-transitionClass.R |only
Gmisc-1.1/Gmisc/tests/visual_tests/bezierArrowGradient_vtests.R | 85 -
Gmisc-1.1/Gmisc/tests/visual_tests/bezierArrowRcpp_vtests.R |only
Gmisc-1.1/Gmisc/tests/visual_tests/bezierArrowSmpl_vtests.R | 107 +
Gmisc-1.1/Gmisc/tests/visual_tests/tansitionPlot_vtests.R | 9
Gmisc-1.1/Gmisc/tests/visual_tests/test-bezier-adjustment.R |only
Gmisc-1.1/Gmisc/vignettes/Descriptives.Rmd |only
Gmisc-1.1/Gmisc/vignettes/Transition-class.Rmd |only
Gmisc-1.1/Gmisc/vignettes/transitionPlot.Rmd |only
76 files changed, 1310 insertions(+), 1147 deletions(-)
Title: Fitting Step-Functions
Diff between stepR versions 1.0 dated 2015-02-16 and 1.0-1 dated 2015-03-04
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Thomas Hotz [aut, cre],
Hannes Sieling [aut]
Maintainer: Thomas Hotz
ChangeLog |only
DESCRIPTION | 6 +++---
MD5 | 7 ++++---
src/StepBinom.cpp | 4 ++--
src/StepPoisson.cpp | 4 ++--
5 files changed, 11 insertions(+), 10 deletions(-)
Title: Safe Implementation of Monte Carlo Tests
Diff between simctest versions 2.4 dated 2013-12-13 and 2.4.1 dated 2015-03-04
Description: Algorithms for the implementation and evaluation of Monte Carlo tests, as well as for their use in multiple testing procedures.
Author: Axel Gandy
Maintainer: Axel Gandy
DESCRIPTION | 8 +--
MD5 | 31 ++++++------
NAMESPACE | 3 -
R/mmctest.R | 85 ++++++++++++++++++++++++++++-----
build/vignette.rds |binary
inst/doc/simctest-intro.R | 26 +++++-----
inst/doc/simctest-intro.Rnw | 6 --
inst/doc/simctest-intro.pdf |binary
inst/doc/simctest-mmctest-intro.R | 53 +++++++++++---------
inst/doc/simctest-mmctest-intro.Rnw | 89 ++++++++++++++++++++++++++++++-----
inst/doc/simctest-mmctest-intro.pdf |binary
man/mmctest-methods.Rd | 6 +-
man/mmctestres-class.Rd | 3 +
man/rejProb-methods.Rd |only
vignettes/papers.bib | 66 ++++++++++++++-----------
vignettes/simctest-intro.Rnw | 6 --
vignettes/simctest-mmctest-intro.Rnw | 89 ++++++++++++++++++++++++++++++-----
17 files changed, 339 insertions(+), 132 deletions(-)
Title: Running MLwiN from Within R
Diff between R2MLwiN versions 0.2-1 dated 2014-04-22 and 0.8-0 dated 2015-03-04
Description: An R command interface to the MLwiN multilevel
modelling software package.
Author: Zhengzheng Zhang [aut, cre],
Chris Charlton [aut],
Richard Parker [aut],
George Leckie [aut],
William Browne [aut]
Maintainer: Zhengzheng Zhang
R2MLwiN-0.2-1/R2MLwiN/R/MacroScript1.R |only
R2MLwiN-0.2-1/R2MLwiN/R/MacroScript2.R |only
R2MLwiN-0.2-1/R2MLwiN/demo/Chapter01.R |only
R2MLwiN-0.2-1/R2MLwiN/demo/Chapter02.R |only
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R2MLwiN-0.2-1/R2MLwiN/demo/Chapter05.R |only
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R2MLwiN-0.2-1/R2MLwiN/demo/Chapter08.R |only
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R2MLwiN-0.2-1/R2MLwiN/demo/Chapter10.R |only
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R2MLwiN-0.2-1/R2MLwiN/demo/Chapter17.R |only
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R2MLwiN-0.2-1/R2MLwiN/demo/Chapter19.R |only
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Title: Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
Diff between Newdistns versions 1.0 dated 2013-08-19 and 2.0 dated 2015-03-04
Description: Computes the probability density function, cumulative distribution function, quantile function, random numbers and measures of inference for the following general families of distributions (each family defined in terms of an arbitrary cdf G): Marshall Olkin G distributions, exponentiated G distributions, beta G distributions, gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions, beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G distributions, Weibull G distributions, log gamma G I distributions, log gamma G II distributions, exponentiated generalized G distributions, exponentiated Kumaraswamy G distributions, geometric exponential Poisson G distributions, truncated-exponential skew-symmetric G distributions, modified beta G distributions, and exponentiated exponential Poisson G distributions.
Author: Saralees Nadarajah, Ricardo Rocha
Maintainer: Saralees Nadarajah
DESCRIPTION | 18
MD5 | 46
NAMESPACE | 1
R/newdistns.R | 2381 ++++++++++++++++++++++++++++++++++++++++++++---
man/Newdistns-package.Rd | 13
man/beg.Rd | 23
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man/loggammag2.Rd | 22
man/mbetag.Rd | 22
man/mog.Rd | 24
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24 files changed, 2554 insertions(+), 329 deletions(-)
Title: Interface to Dygraphs Interactive Time Series Charting Library
Diff between dygraphs versions 0.4.1 dated 2015-01-26 and 0.4.2 dated 2015-03-04
Description: An R interface to the dygraphs JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph]
Maintainer: JJ Allaire
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 6 ++++++
R/options.R | 3 ++-
R/series.R | 7 ++-----
5 files changed, 18 insertions(+), 14 deletions(-)
Title: Interface to Colombos Compendia using the Exposed REST API
Diff between Rcolombos versions 1.5.0 dated 2014-03-26 and 1.5.2 dated 2015-03-04
Description: Provides programmatic access to Colombos, a web based
interface for exploring and analyzing comprehensive organism-specific
cross-platform expression compendia of bacterial organisms.
Author: Paolo Sonego
Maintainer: Paolo Sonego
DESCRIPTION | 10 ++---
MD5 | 30 +++++++--------
R/Rcolombos.R | 8 ++--
R/utilities.R | 12 +++---
man/advanced_search.Rd | 68 ++++++++++++++----------------------
man/advanced_search_by_both.Rd | 57 +++++++++++-------------------
man/advanced_search_by_contrasts.Rd | 36 ++++++-------------
man/advanced_search_by_genes.Rd | 33 +++++++----------
man/getCompendium.Rd | 27 ++++++--------
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man/listContrasts.Rd | 20 +++++-----
man/listEntities.Rd | 24 +++++-------
man/listGenes.Rd | 20 +++++-----
man/listOrganisms.Rd | 11 +++--
man/parseCompendium.Rd | 21 +++++------
man/quick_search.Rd | 33 +++++++----------
16 files changed, 189 insertions(+), 242 deletions(-)
Title: Generation of Regular Factorial Designs
Diff between planor versions 0.2-0 dated 2014-07-10 and 0.2-3 dated 2015-03-04
Description: Automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier
planor-0.2-0/planor/tests/testSummary.R |only
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planor-0.2-3/planor/R/designkey.R | 7
planor-0.2-3/planor/R/generic.R | 4
planor-0.2-3/planor/R/keymatrix.R | 11
planor-0.2-3/planor/R/keyring.R | 6
planor-0.2-3/planor/R/listofdesignkeys.R | 10
planor-0.2-3/planor/R/listofkeyrings.R | 9
planor-0.2-3/planor/R/planor.R | 1079 +++++++++++-----------
planor-0.2-3/planor/inst/doc/index.html | 12
planor-0.2-3/planor/inst/doc/planor-manual.pdf |binary
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planor-0.2-3/planor/tests/Kobi2.Rout.save | 8
planor-0.2-3/planor/tests/Kobi3.Rout.save | 8
planor-0.2-3/planor/tests/KobiRecursive.Rout.save | 8
planor-0.2-3/planor/tests/NewKobi1.Rout.save | 8
planor-0.2-3/planor/tests/Touzeau2.Rout.save | 8
planor-0.2-3/planor/tests/exsimple.Rout.save | 8
planor-0.2-3/planor/tests/generate.Rout.save | 16
planor-0.2-3/planor/tests/haies.Rout.save | 8
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planor-0.2-3/planor/tests/noineligible.Rout.save | 8
32 files changed, 667 insertions(+), 678 deletions(-)
Title: Nonlinear Calibration
Diff between nCal versions 14.11-8 dated 2014-11-08 and 2015.3-3 dated 2015-03-04
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.
Author: Youyi Fong
Maintainer: Youyi Fong
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nCal-2015.3-3/nCal/NAMESPACE | 14 ++++
nCal-2015.3-3/nCal/R/bcrm.R | 7 +-
nCal-2015.3-3/nCal/R/ncalGUI.R | 2
nCal-2015.3-3/nCal/build/vignette.rds |binary
nCal-2015.3-3/nCal/inst/doc/nCal-vignette.R | 33 ++-------
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23 files changed, 53 insertions(+), 56 deletions(-)
Title: Utility Functions by Youyi, Krisz and Others
Diff between kyotil versions 2014.10-5 dated 2014-10-01 and 2015.2-27 dated 2015-03-04
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong
Maintainer: Youyi Fong
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kyotil-2015.2-27/kyotil/R/plotting.R | 2
kyotil-2015.2-27/kyotil/R/print.R | 135 +++-
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Title: Statistical Methods and Models for Claims Reserving in General
Insurance
Diff between ChainLadder versions 0.1.9 dated 2014-12-20 and 0.2.0 dated 2015-03-04
Description: Various statistical methods and models which are
typically used for the estimation of outstanding claims reserves
in general insurance, including those to estimate the claims
development result as required under Solvency II.
Author: Markus Gesmann [aut, cre],
Daniel Murphy [aut],
Wayne Zhang [aut],
Alessandro Carrato [aut],
Giuseppe Crupi [aut],
Christophe Dutang [ctb],
Arnaud Lacoume [ctb],
Arthur Charpentier [ctb],
Mario Wuthrich [aut]
Maintainer: Markus Gesmann
ChainLadder-0.1.9/ChainLadder/inst/CITATION |only
ChainLadder-0.2.0/ChainLadder/DESCRIPTION | 46
ChainLadder-0.2.0/ChainLadder/MD5 | 61
ChainLadder-0.2.0/ChainLadder/NAMESPACE | 22
ChainLadder-0.2.0/ChainLadder/NEWS | 49
ChainLadder-0.2.0/ChainLadder/R/BootstrapReserve.R | 818 +++++-----
ChainLadder-0.2.0/ChainLadder/R/CDRMethods.R |only
ChainLadder-0.2.0/ChainLadder/R/ChainLadder.R | 1
ChainLadder-0.2.0/ChainLadder/R/MWChainLadder.R |only
ChainLadder-0.2.0/ChainLadder/R/MackChainLadderFunctions.R | 1
ChainLadder-0.2.0/ChainLadder/R/Triangles.R | 219 +-
ChainLadder-0.2.0/ChainLadder/R/tweedieReserve.R |only
ChainLadder-0.2.0/ChainLadder/R/zzz.R | 5
ChainLadder-0.2.0/ChainLadder/README.md | 27
ChainLadder-0.2.0/ChainLadder/THANKS | 34
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ChainLadder-0.2.0/ChainLadder/demo/MackChainLadder.R | 18
ChainLadder-0.2.0/ChainLadder/inst/doc/ChainLadder.R | 196 +-
ChainLadder-0.2.0/ChainLadder/inst/doc/ChainLadder.Rnw | 438 +++--
ChainLadder-0.2.0/ChainLadder/inst/doc/ChainLadder.pdf |binary
ChainLadder-0.2.0/ChainLadder/inst/unitTests/runit.tweedieReserve.R |only
ChainLadder-0.2.0/ChainLadder/man/BootChainLadder.Rd | 10
ChainLadder-0.2.0/ChainLadder/man/CDR.Rd |only
ChainLadder-0.2.0/ChainLadder/man/ChainLadder-package.Rd | 71
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ChainLadder-0.2.0/ChainLadder/man/MackChainLadder.Rd | 27
ChainLadder-0.2.0/ChainLadder/man/Mse-methods.Rd | 3
ChainLadder-0.2.0/ChainLadder/man/MultiChainLadder.Rd | 372 ++--
ChainLadder-0.2.0/ChainLadder/man/UKMotor.Rd |only
ChainLadder-0.2.0/ChainLadder/man/tweedieMethods.Rd |only
ChainLadder-0.2.0/ChainLadder/man/tweedieReserve.Rd |only
ChainLadder-0.2.0/ChainLadder/vignettes/ChainLadder-035.pdf |only
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ChainLadder-0.2.0/ChainLadder/vignettes/ChainLadder.Rnw | 438 +++--
ChainLadder-0.2.0/ChainLadder/vignettes/ChainLadder.bib | 76
ChainLadder-0.2.0/ChainLadder/vignettes/tweedieReserve.pdf |only
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Title: Download Content from NCBI Databases
Diff between RISmed versions 2.1.4 dated 2015-01-26 and 2.1.5 dated 2015-03-04
Description: A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.
Author: Stephanie Kovalchik
Maintainer: S. A. Kovalchik
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RISmed-2.1.5/RISmed/MD5 | 101 +++++++---
RISmed-2.1.5/RISmed/NAMESPACE | 5
RISmed-2.1.5/RISmed/NEWS | 10 -
RISmed-2.1.5/RISmed/R/AllGenerics.R | 36 +++
RISmed-2.1.5/RISmed/R/Cited.R |only
RISmed-2.1.5/RISmed/R/EUtils.R | 31 ++-
RISmed-2.1.5/RISmed/R/EUtilsSummary.R | 19 +
RISmed-2.1.5/RISmed/R/Medline.R | 217 ++++++++++++++++++----
RISmed-2.1.5/RISmed/data/myeloma.RData |binary
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RISmed-2.1.5/RISmed/man/EUtilsGet.Rd | 2
RISmed-2.1.5/RISmed/man/EUtilsSummary-class.Rd | 3
RISmed-2.1.5/RISmed/man/EUtilsSummary.Rd | 4
RISmed-2.1.5/RISmed/man/HourAccepted-methods.Rd |only
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RISmed-2.1.5/RISmed/man/Medline.Rd | 72 ++++++-
RISmed-2.1.5/RISmed/man/Mesh.Rd | 14 -
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88 files changed, 425 insertions(+), 106 deletions(-)