Title: Date Calculations and Manipulation
Diff between TimeWarp versions 1.0-7 dated 2013-04-03 and 1.0.11 dated 2015-03-07
Description: Date sequence, relative date calculations, and date manipulation with business days
and holidays. Works with Date and POSIXt classes.
Author: Tony Plate, Jeffrey Horner, Lars Hansen
Maintainer: Tony Plate
TimeWarp-1.0-7/TimeWarp/TODO.txt |only
TimeWarp-1.0-7/TimeWarp/portingNotes.txt |only
TimeWarp-1.0.11/TimeWarp/DESCRIPTION | 15 -
TimeWarp-1.0.11/TimeWarp/MD5 | 46 ++--
TimeWarp-1.0.11/TimeWarp/NEWS | 12 +
TimeWarp-1.0.11/TimeWarp/R/dateMatch.R | 240 +++++++++++------------
TimeWarp-1.0.11/TimeWarp/R/dateParse.R | 70 ++++++
TimeWarp-1.0.11/TimeWarp/R/dateSeq.R | 37 +--
TimeWarp-1.0.11/TimeWarp/R/dateWarp.R | 135 ++++--------
TimeWarp-1.0.11/TimeWarp/R/holidays.R | 16 -
TimeWarp-1.0.11/TimeWarp/R/misc.R | 2
TimeWarp-1.0.11/TimeWarp/inst |only
TimeWarp-1.0.11/TimeWarp/man/TimeWarp-package.Rd | 3
TimeWarp-1.0.11/TimeWarp/man/dateAlign.Rd | 19 -
TimeWarp-1.0.11/TimeWarp/man/dateMatch.Rd | 3
TimeWarp-1.0.11/TimeWarp/man/dateParse.Rd | 12 -
TimeWarp-1.0.11/TimeWarp/man/dateSeq.Rd | 5
TimeWarp-1.0.11/TimeWarp/man/holidays.Rd | 3
TimeWarp-1.0.11/TimeWarp/man/pitfalls.Rd | 35 +++
TimeWarp-1.0.11/TimeWarp/tests/dateMatch.Rt | 5
TimeWarp-1.0.11/TimeWarp/tests/dateParse.Rt | 2
TimeWarp-1.0.11/TimeWarp/tests/dateSeq.Rt | 80 +++++++
TimeWarp-1.0.11/TimeWarp/tests/dateShift.Rt | 2
TimeWarp-1.0.11/TimeWarp/tests/dateWarp.Rt | 5
TimeWarp-1.0.11/TimeWarp/tests/holidays.Rt | 11 -
25 files changed, 463 insertions(+), 295 deletions(-)
Title: Read, Write and Edit XLSX Files
Diff between openxlsx versions 2.2.1 dated 2014-10-18 and 2.4.0 dated 2015-03-07
Description: Simplifies the creation of .xlsx files by providing a
high level interface to writing, styling and editing worksheets. Through
the use of Rcpp, read/write times are comparable to the xlsx and XLConnect
packages with the added benefit of removing the dependency on Java.
Author: Alexander Walker [aut, cre],
Luca Braglia [ctb]
Maintainer: Alexander Walker
DESCRIPTION | 12
MD5 | 153 +++--
NAMESPACE | 8
NEWS | 43 +
R/RcppExports.R | 48 +
R/StyleClass.R | 133 ++++-
R/WorkbookClass.R | 921 ++++++++++++++++++++++++++++-------
R/baseXML.R | 81 ++-
R/borderFunctions.R | 267 +++++-----
R/helperFunctions.R | 151 +++--
R/loadWorkbook.R | 484 +++++++++++++-----
R/openxlsxCoerce.R |only
R/readWorkbook.R | 533 ++++++++++++++++++--
R/wrappers.R | 789 ++++++++++++++++++++++--------
R/writeData.R | 174 ------
R/writeDataTable.R | 28 -
R/writexlsx.R | 76 ++
build/vignette.rds |binary
inst/doc/Introduction.Rnw | 102 ++-
inst/doc/Introduction.pdf |binary
inst/doc/formatting.Rnw | 85 +--
inst/doc/formatting.pdf |binary
inst/loadExample.xlsx |binary
inst/readTest.xlsx |binary
man/addFilter.Rd | 7
man/addStyle.Rd | 10
man/addWorksheet.Rd | 7
man/conditionalFormat.Rd | 25
man/conditionalFormatting.Rd |only
man/convertFromExcelRef.Rd | 3
man/convertToDate.Rd | 14
man/convertToDateTime.Rd | 10
man/createStyle.Rd | 13
man/createWorkbook.Rd | 3
man/deleteData.Rd | 9
man/freezePane.Rd | 7
man/getBaseFont.Rd | 3
man/getCellRefs.Rd | 3
man/getDateOrigin.Rd |only
man/getStyles.Rd | 7
man/insertImage.Rd | 3
man/insertPlot.Rd | 11
man/loadWorkbook.Rd | 16
man/mergeCells.Rd | 3
man/modifyBaseFont.Rd | 3
man/names.Rd | 3
man/openXL.Rd | 3
man/openxlsx.Rd | 3
man/pageSetup.Rd | 7
man/read.xlsx.Rd | 54 +-
man/readWorkbook.Rd | 23
man/removeCellMerge.Rd | 3
man/removeColWidths.Rd | 9
man/removeFilter.Rd | 3
man/removeRowHeights.Rd | 5
man/removeWorksheet.Rd | 5
man/renameWorksheet.Rd | 3
man/replaceStyle.Rd | 7
man/saveWorkbook.Rd | 5
man/setColWidths.Rd | 7
man/setFooter.Rd | 5
man/setHeader.Rd | 7
man/setHeaderFooter.Rd | 3
man/setRowHeights.Rd | 3
man/sheets.Rd | 3
man/showGridLines.Rd | 9
man/worksheetOrder.Rd | 3
man/write.xlsx.Rd | 9
man/writeData.Rd | 15
man/writeDataTable.Rd | 17
src/RcppExports.cpp | 181 +++++--
src/cppFunctions.cpp | 1101 +++++++++++++++++++++++++++++--------------
tests |only
vignettes/Introduction.Rnw | 102 ++-
vignettes/formatting.Rnw | 85 +--
75 files changed, 4154 insertions(+), 1774 deletions(-)
Title: Import Articles from LexisNexis Using the tm Text Mining
Framework
Diff between tm.plugin.lexisnexis versions 1.1 dated 2014-06-11 and 1.2 dated 2015-03-07
More information about tm.plugin.lexisnexis at CRAN
Description: Provides a tm Source to create corpora from
articles exported from the LexisNexis content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat
tm.plugin.lexisnexis-1.1/tm.plugin.lexisnexis/inst/texts/lexisnexis_test.html |only
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/DESCRIPTION | 14 -
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/MD5 | 14 -
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/NEWS | 3
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/R/readLexisNexisHTML.R | 92 ++++++----
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/inst/texts/lexisnexis_test_en.html |only
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/inst/texts/lexisnexis_test_fr.html |only
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/man/LexisNexisSource.Rd | 4
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/man/tm.plugin.lexisnexis-package.Rd | 2
tm.plugin.lexisnexis-1.2/tm.plugin.lexisnexis/tests |only
10 files changed, 83 insertions(+), 46 deletions(-)
Permanent link
Title: Nonparametric Simulation of RNA-Seq Data
Diff between SimSeq versions 1.2.0 dated 2014-12-10 and 1.3.0 dated 2015-03-07
Description: RNA sequencing analysis methods are often derived by relying on hypothetical parametric models for read counts that are not likely to be precisely satisfied in practice. Methods are often tested by analyzing data that have been simulated according to the assumed model. This testing strategy can result in an overly optimistic view of the performance of an RNA-seq analysis method. We develop a data-based simulation algorithm for RNA-seq data. The vector of read counts simulated for a given experimental unit has a joint distribution that closely matches the distribution of a source RNA-seq dataset provided by the user. Users control the proportion of genes simulated to be differentially expressed (DE) and can provide a vector of weights to control the distribution of effect sizes. The algorithm requires a matrix of RNA-seq read counts with large sample sizes in at least two treatment groups. Many datasets are available that fit this standard.
Author: Samuel Benidt
Maintainer: Samuel Benidt
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
NEWS | 6 ++++++
R/SimData.R | 7 +++++--
data/kidney.rda |binary
inst |only
man/SimData.Rd | 9 ++++++---
man/SimSeq-package.Rd | 4 ++--
man/kidney.Rd | 18 +++++++++++++++---
9 files changed, 46 insertions(+), 21 deletions(-)
Title: Parallel Programming Tools for Rcpp
Diff between RcppParallel versions 4.3.3 dated 2014-10-21 and 4.3.4 dated 2015-03-07
Description: High level functions for doing parallel programming with Rcpp.
For example, the parallelFor function can be used to convert the work of
a standard serial "for" loop into a parallel one and the parallelReduce
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut, cre],
Romain Francois [aut, cph],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: JJ Allaire
RcppParallel-4.3.3/RcppParallel/src/Makevars.win |only
RcppParallel-4.3.4/RcppParallel/DESCRIPTION | 37 ++++-
RcppParallel-4.3.4/RcppParallel/MD5 | 42 ++++--
RcppParallel-4.3.4/RcppParallel/NAMESPACE | 1
RcppParallel-4.3.4/RcppParallel/NEWS | 7 -
RcppParallel-4.3.4/RcppParallel/R/build.R |only
RcppParallel-4.3.4/RcppParallel/R/hooks.R |only
RcppParallel-4.3.4/RcppParallel/R/options.R | 35 -----
RcppParallel-4.3.4/RcppParallel/README.md | 48 -------
RcppParallel-4.3.4/RcppParallel/inst/include/RcppParallel.h | 13 +
RcppParallel-4.3.4/RcppParallel/inst/presentations |only
RcppParallel-4.3.4/RcppParallel/man/RcppParallel-package.Rd | 18 ++
RcppParallel-4.3.4/RcppParallel/man/RcppParallelLibs.Rd |only
RcppParallel-4.3.4/RcppParallel/man/setThreadOptions.Rd | 4
RcppParallel-4.3.4/RcppParallel/src/Makevars | 66 +++++++---
RcppParallel-4.3.4/RcppParallel/src/options.cpp | 4
RcppParallel-4.3.4/RcppParallel/src/tbb/build/common_rules.inc | 6
RcppParallel-4.3.4/RcppParallel/src/tbb/build/windows.inc | 25 ++-
RcppParallel-4.3.4/RcppParallel/tests |only
19 files changed, 171 insertions(+), 135 deletions(-)