Title: Maxwell Bolzano Bose Einstein Fermi Dirac Distribution and
Exposure Curve
Diff between mbbefd versions 0.6 dated 2015-02-13 and 0.6.1 dated 2015-03-08
Description: It contains the definition of Maxwell Bolzano Bose Einstein Fermi
Dirac (MBBEFD) distribution (distribution, density, quantile, random
generation functions) as well as MBBEFD exposure curve, used in actuarial
application to price reinsurance contracts. The vignette shows code
snippets to fit the distribution to empirical data.
Author: Giorgio Spedicato
Maintainer: Giorgio Spedicato
mbbefd-0.6.1/mbbefd/ChangeLog | 10 ++
mbbefd-0.6.1/mbbefd/DESCRIPTION | 17 ++--
mbbefd-0.6.1/mbbefd/MD5 | 22 ++---
mbbefd-0.6.1/mbbefd/NEWS | 8 +-
mbbefd-0.6.1/mbbefd/README.md |only
mbbefd-0.6.1/mbbefd/inst/CITATION | 4 -
mbbefd-0.6.1/mbbefd/inst/doc/mbbefd.Rnw | 71 ++++++++++++++----
mbbefd-0.6.1/mbbefd/man/mbbefd-package.Rd | 4 -
mbbefd-0.6.1/mbbefd/vignettes/mbbefd-distrPlot.pdf |binary
mbbefd-0.6.1/mbbefd/vignettes/mbbefd-drateplot.pdf |binary
mbbefd-0.6.1/mbbefd/vignettes/mbbefd-survivalPlot.pdf |binary
mbbefd-0.6.1/mbbefd/vignettes/mbbefd.Rnw | 71 ++++++++++++++----
mbbefd-0.6/mbbefd/vignettes/mbbefd.tex |only
13 files changed, 158 insertions(+), 49 deletions(-)
Title: Quantitative Financial Modelling Framework
Diff between quantmod versions 0.4-3 dated 2014-12-15 and 0.4-4 dated 2015-03-08
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, ctb],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich
DESCRIPTION | 28 +++--
MD5 | 16 +--
NAMESPACE | 1
R/getOptionChain.R | 129 +++++++++++++++----------
R/getSymbols.R | 240 +++++++++++++++++++++++++++++++++++++++--------
man/TA.Rd | 1
man/addCCI.Rd |only
man/getOptionChain.Rd | 19 ++-
man/getSymbols.yahooj.Rd |only
man/quantmod-package.Rd | 6 -
10 files changed, 324 insertions(+), 116 deletions(-)
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Diff between memisc versions 0.96-10 dated 2014-10-13 and 0.97 dated 2015-03-08
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Author: Martin Elff (with contributions by Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Deepayan Sarkar, Achim Zeileis)
Maintainer: Martin Elff
memisc-0.96-10/memisc/R/aggregateFormula.R |only
memisc-0.96-10/memisc/R/attch.R |only
memisc-0.96-10/memisc/inst/NEWS |only
memisc-0.96-10/memisc/man/aggregateFormula.Rd |only
memisc-0.96-10/memisc/man/include.Rd |only
memisc-0.97/memisc/DESCRIPTION | 21 -
memisc-0.97/memisc/MD5 | 79 ++--
memisc-0.97/memisc/NAMESPACE | 45 +-
memisc-0.97/memisc/R/AllGenerics.R | 10
memisc-0.97/memisc/R/Iconv.R |only
memisc-0.97/memisc/R/Termplot.R | 55 ---
memisc-0.97/memisc/R/codebook-methods.R | 28 +
memisc-0.97/memisc/R/contrasts.R | 349 ++++++++++----------
memisc-0.97/memisc/R/dataset-methods.R | 110 +++---
memisc-0.97/memisc/R/genTable.R |only
memisc-0.97/memisc/R/import-internal-spss-sysfile.R | 3
memisc-0.97/memisc/R/paste-and-draw.R |only
memisc-0.97/memisc/R/recode.R | 2
memisc-0.97/memisc/R/yy-mtable-ext-DaveAtkins.R | 4
memisc-0.97/memisc/build/vignette.rds |binary
memisc-0.97/memisc/demo/Termplot.R | 98 ++---
memisc-0.97/memisc/demo/anes48.R | 264 +++++++--------
memisc-0.97/memisc/demo/monte.carlo.R | 260 +++++++-------
memisc-0.97/memisc/inst/ChangeLog |only
memisc-0.97/memisc/inst/NEWS.Rd |only
memisc-0.97/memisc/inst/doc/anes48.R | 4
memisc-0.97/memisc/inst/doc/anes48.Rnw | 4
memisc-0.97/memisc/inst/doc/anes48.pdf |binary
memisc-0.97/memisc/man/00memisc.Rd | 4
memisc-0.97/memisc/man/By.Rd | 2
memisc-0.97/memisc/man/Iconv.Rd |only
memisc-0.97/memisc/man/Sapply.Rd | 2
memisc-0.97/memisc/man/Table.Rd | 4
memisc-0.97/memisc/man/Termplot.Rd | 2
memisc-0.97/memisc/man/Write.Rd |only
memisc-0.97/memisc/man/codebook.Rd | 11
memisc-0.97/memisc/man/contrasts.Rd | 4
memisc-0.97/memisc/man/errbars.Rd | 4
memisc-0.97/memisc/man/genTable.Rd |only
memisc-0.97/memisc/man/getSummary.Rd | 11
memisc-0.97/memisc/man/importers.Rd | 17
memisc-0.97/memisc/man/mtable.Rd | 2
memisc-0.97/memisc/man/percent.Rd | 4
memisc-0.97/memisc/man/predictionFrame.Rd | 2
memisc-0.97/memisc/man/toDataFrame.Rd | 2
memisc-0.97/memisc/src/pspp-portableStream-for-R.c | 6
memisc-0.97/memisc/vignettes/anes48.Rnw | 4
47 files changed, 737 insertions(+), 680 deletions(-)
Title: Fast Specialized CSV File Loader
Diff between csvread versions 1.1 dated 2014-11-11 and 1.2 dated 2015-03-08
Description: Functions for loading large (10M+ lines) CSV
and other delimited files, similar to read.csv, but typically faster and
using less memory than the standard R loader. While not entirely general,
it covers many common use cases when the types of columns in the CSV file
are known in advance. In addition, the package provides a class 'int64',
which represents 64-bit integers exactly when reading from a file. The
latter is useful when working with 64-bit integer identifiers exported from
databases. The CSV file loader supports common column types including
'integer', 'double', 'string', and 'int64', leaving further type
transformations to the user.
Author: Sergei Izrailev
Maintainer: Sergei Izrailev
DESCRIPTION | 14 +++---
MD5 | 30 +++++++------
NAMESPACE | 2
NEWS | 8 +++
R/csvread-package.R | 9 ++--
R/csvread.R | 103 +++++++++++++++++++++++++++++++++++++++++++---
R/longint.R | 2
README.md | 2
inst/10rows_na.csv |only
inst/COPYRIGHTS | 1
inst/csvread_1.2.pdf |only
man/Ops.int64.Rd | 3 -
man/csvread.Rd | 108 ++++++++++++++++++++++++++++++++++++++++++++-----
man/int64.Rd | 7 +--
src/CMRDataCollector.h | 86 ++++++++++++++++++++++++++++++++++-----
src/csvread.cpp | 70 ++++++++-----------------------
src/int64.h | 18 +++++---
17 files changed, 346 insertions(+), 117 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Diff between blocksdesign versions 1.4 dated 2015-01-13 and 1.5 dated 2015-03-08
Description: Nested block designs for unstructured treatment sets where blocks
can be repeatedly nested and treatments can have different levels of
replication. Blocks are optimized hierarchically from the top down with each set of
nested blocks optimized within the levels of the preceding set of blocks. Block sizes
are equal if the number of blocks exactly divides the number of plots,
otherwise they differ by at most one plot. The design output is a data
table giving a randomised allocation of treatments to blocks together with
a plan table showing treatments in blocks and a set of blocks-by-treatments
incidence matrices, one for each blocks stratum.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson
DESCRIPTION | 12 -
MD5 | 18 -
NAMESPACE | 2
R/blocks.r | 501 ++++++++++++++++++++++++--------------------
R/blocksdesign-package.r | 14 -
R/upper_bounds.r | 2
man/blocks.Rd | 96 ++++----
man/blocksdesign-package.Rd | 17 -
man/efficiencies.Rd | 3
man/upper_bounds.Rd | 5
10 files changed, 368 insertions(+), 302 deletions(-)
Title: Functions for Analysis of Agreement in Method Comparison Studies
Diff between MethComp versions 1.22 dated 2013-06-18 and 1.22.1 dated 2015-03-08
Description: Methods (standard and advanced) for analysis of agreement
between measurement methods.
Author: Bendix Carstensen, Lyle Gurrin, Claus Ekstrom, Michal Figurski
Maintainer: Bendix Carstensen
DESCRIPTION | 9 ++++-----
MD5 | 10 +++++-----
R/MCmcmc.R | 12 ++++++------
R/Meth.r | 4 ++--
R/check.MCmcmc.R | 16 ++++++++--------
R/subset.MCmcmc.R | 4 ++--
6 files changed, 27 insertions(+), 28 deletions(-)
Title: Scores Features for Feature Selection
Diff between FeaLect versions 1.7 dated 2014-12-31 and 1.8 dated 2015-03-08
Description: For each feature, a score is computed that can be useful
for feature selection. Several random subsets are sampled from
the input data and for each random subset, various linear
models are fitted using lars method. A score is assigned to
each feature based on the tendency of LASSO in including that
feature in the models.Finally, the average score and the models
are returned as the output. The features with relatively low
scores are recommended to be ignored because they can lead to
overfitting of the model to the training data. Moreover, for
each random subset, the best set of features in terms of global
error is returned. They are useful for applying Bolasso, the
alternative feature selection method that recommends the
intersection of features subsets.
Author: Habil Zare
Maintainer: Habil Zare
DESCRIPTION | 6 +++---
MD5 | 6 +++---
inst/doc/FeaLect_feature_scorer.Rnw | 4 ++--
vignettes/FeaLect_feature_scorer.Rnw | 4 ++--
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Diff between geoBayes versions 0.1.3 dated 2014-09-01 and 0.2.150308 dated 2015-03-08
Description: Functions to fit geostatistical data. The data can be
continuous, binary or count data and the models implemented are
flexible. Conjugate priors are assumed on some parameters while
inference on the other parameters can be done through a full
Bayesian analysis of by empirical Bayes methods.
Author: Evangelos Evangelou
Maintainer: Evangelos Evangelou
DESCRIPTION | 27 +-
MD5 | 67 ++---
NAMESPACE | 1
NEWS | 4
R/bf.R | 122 ++++++---
R/bfse.R |only
R/calcbf.R | 129 +++++++---
R/geoesteb.R | 573 +++++++++++++++++++++++++++------------------
R/linkfcn.R | 44 +++
R/mcsp2.R | 234 ++++++++++++------
R/util.R | 66 +++--
demo/00Index | 9
demo/rhizoctonia3.R | 4
demo/rhizoctonia5.R |only
man/bf1skel.Rd | 36 +-
man/bf2optim.Rd | 11
man/bfse.Rd |only
man/ebsglmm.Rd | 68 +++--
man/ebstrga.Rd | 55 ++--
man/linkfcn.Rd | 12
man/mcsglmm.Rd | 31 +-
man/mcstrga.Rd | 11
man/stackdata.Rd | 20 -
src/Makevars | 16 -
src/auxfcns.c | 17 -
src/bfsp.f90 | 382 ++++++++++++++++++++++--------
src/bmargin.f90 | 1
src/calcb2.f90 | 651 ++++++++++++++++++++++++++++++++++++++++++----------
src/covfun.f90 | 4
src/flogsumexp.f90 | 8
src/interfaces.f90 | 499 +++++----------------------------------
src/lbfgsbmod.f90 | 83 ------
src/linkfcn.f90 | 344 ++++++++++++++++++++++++++-
src/llik.f90 |only
src/mcsp2.f90 | 552 ++++++++++++++++++++++++++++++++++----------
src/mcspz0.f90 |only
src/pdfy.f90 |only
src/skelpnts.f90 |only
38 files changed, 2647 insertions(+), 1434 deletions(-)
Title: Predict Presence of Signal Peptides
Diff between signal.hsmm versions 1.2 dated 2015-03-05 and 1.2.1 dated 2015-03-08
Description: Predicts presence of signal peptides in eukaryotic protein using
hidden semi-Markov models. The implemented algorithm can be accessed both
from command line and GUI.
Author: Michal Burdukiewicz [cre, aut],
Piotr Sobczyk [aut]
Maintainer: Michal Burdukiewicz
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
man/signal.hsmm.Rd | 5 ++---
3 files changed, 8 insertions(+), 9 deletions(-)
Title: Bi-Directional Interface Between R and Scala with Callbacks
Diff between rscala versions 1.0.1 dated 2015-03-06 and 1.0.2 dated 2015-03-08
Description: The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions 2.10 and 2.11 are supported.
Author: David B. Dahl [aut, cre],
Scala developers [ctb] (see http://scala-lang.org/)
Maintainer: David B. Dahl
rscala-1.0.1/rscala/inst/java/rscala_2.10-1.0.1.jar |only
rscala-1.0.1/rscala/inst/java/rscala_2.11-1.0.1.jar |only
rscala-1.0.1/rscala/java/rscala_2.10-1.0.1-sources.jar |only
rscala-1.0.1/rscala/java/rscala_2.11-1.0.1-sources.jar |only
rscala-1.0.2/rscala/DESCRIPTION | 9 +++--
rscala-1.0.2/rscala/MD5 | 22 ++++++-------
rscala-1.0.2/rscala/NAMESPACE | 2 +
rscala-1.0.2/rscala/NEWS | 8 +++--
rscala-1.0.2/rscala/R/scalaInterpreter.R | 27 ++++++++++++++---
rscala-1.0.2/rscala/inst/java/rscala_2.10-1.0.2.jar |only
rscala-1.0.2/rscala/inst/java/rscala_2.11-1.0.2.jar |only
rscala-1.0.2/rscala/java/rscala_2.10-1.0.2-sources.jar |only
rscala-1.0.2/rscala/java/rscala_2.11-1.0.2-sources.jar |only
rscala-1.0.2/rscala/man/constructor.Rd | 4 +-
rscala-1.0.2/rscala/man/eval.Rd | 2 -
rscala-1.0.2/rscala/man/rscala-package.Rd | 4 +-
16 files changed, 52 insertions(+), 26 deletions(-)
Title: Network-Based Gene Set Analysis
Diff between netgsa versions 1.0 dated 2014-12-02 and 2.0 dated 2015-03-08
Description: The netgsa-package contains functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.
Author: Ali Shojaie and Jing Ma
Maintainer: Jing Ma
DESCRIPTION | 14 +---
MD5 | 8 +-
R/call.netGSA.R | 2
man/NetGSA.Rd | 157 ++++++++++++++++++++++++--------------------------
man/netgsa-package.Rd | 17 +----
5 files changed, 94 insertions(+), 104 deletions(-)
Title: A Rapid Digital Image Analysis for Leaf Area
Diff between LeafArea versions 0.0.5 dated 2015-02-02 and 0.0.6 dated 2015-03-08
Description: An interface for the image processing program ImageJ, which allows a rapid digital image analysis for particle sizes. This package includes function to write an ImageJ macro which is optimized for a leaf area analysis by default.
Author: Masatoshi Katabuchi
Maintainer: Masatoshi Katabuchi
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/auto.run.R | 17 ++++++++++++++++-
R/findimagej.R | 23 +++++++++++++----------
man/LeafArea-package.Rd | 4 ++--
man/auto.run.Rd | 6 ++----
6 files changed, 42 insertions(+), 26 deletions(-)
Title: IBM in-Database Analytics for R
Diff between ibmdbR versions 1.34.3 dated 2014-12-12 and 1.36.7 dated 2015-03-08
Description: Functionality required to efficiently use R with
IBM DB2(C) for Linux, Unix and Windows as well as IBM dashDB(C).
Many basic and complex R operations are pushed down into the database, which removes
the main memory boundary of R and allows to make full use of parallel processing in
the underlying database.
Author: IBM Corporation
Maintainer: Michael Wurst
DESCRIPTION | 12 ++++----
MD5 | 61 ++++++++++++++++++++++++------------------
NAMESPACE | 26 ++++++++++++++++-
R/connection.R | 26 +++++++++++++++++
R/kMeans.R |only
R/list.R | 17 ++++++++++-
R/model.management.R |only
R/nb.R |only
R/sql.R | 4 ++
README.md | 8 ++---
inst/doc/ibmdbR.pdf |binary
man/as.ida.data.frame.Rd | 19 +++++++------
man/createview.Rd | 8 ++---
man/ida.col.def.methods.Rd | 3 +-
man/ida.data.frame.Rd | 20 ++++++-------
man/ida.data.frame.methods.Rd | 1
man/ida.list.Rd | 15 ++--------
man/ida.list.methods.Rd | 2 +
man/idaConnect.Rd | 4 +-
man/idaDropModel.Rd |only
man/idaKMeans.Rd |only
man/idaListModels.Rd |only
man/idaLm.Rd | 8 ++---
man/idaMerge.Rd | 14 ++++-----
man/idaNb.Rd |only
man/idaQuery.Rd | 8 ++---
man/idaRetrieveModel.Rd |only
man/idaSample.Rd | 10 ++----
man/idaTable.Rd | 13 ++++++--
man/idadf.Rd | 9 ++++--
man/idatools.Rd | 15 +++++-----
man/init.Rd | 8 ++++-
man/overview.Rd | 39 --------------------------
man/showtables.Rd | 7 +++-
tests |only
35 files changed, 202 insertions(+), 155 deletions(-)
Title: Hierarchical Exponential-Family Random Graph Models
Diff between hergm versions 2.2-0 dated 2015-02-25 and 2.2-1 dated 2015-03-08
Description: Estimate and simulate hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/hergm.R | 2 +-
R/hergm.postprocess.R | 17 ++++++++++-------
R/hergm.preprocess.R | 2 +-
R/hergm.terms.R | 1 -
R/zzz.R | 2 +-
man/hergm.Rd | 2 +-
8 files changed, 25 insertions(+), 23 deletions(-)