Title: Analysis of Multiple Time Course Data
Diff between longitudinal versions 1.1.10 dated 2014-11-14 and 1.1.11 dated 2015-03-09
Description: Contains general data structures and
functions for longitudinal data with multiple variables,
repeated measurements, and irregularly spaced time points.
Also implements a shrinkage estimator of dynamical correlation
and dynamical covariance.
Author: Rainer Opgen-Rhein and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 12 ++++++------
MD5 | 12 ++++++------
NAMESPACE | 3 +++
NEWS | 7 +++++++
man/dyn.cor.Rd | 2 +-
man/dyn.scale.Rd | 2 +-
man/tcell.Rd | 6 +-----
7 files changed, 25 insertions(+), 19 deletions(-)
Title: Package for Environmental Statistics, Including US EPA Guidance
Diff between EnvStats versions 1.0.3 dated 2014-10-21 and 2.0.0 dated 2015-03-09
Description: Graphical and statistical analyses of environmental data, with
focus on analyzing chemical concentrations and physical parameters, usually in
the context of mandated environmental monitoring. Major environmental
statistical methods found in the literature and regulatory guidance documents,
with extensive help that explains what these methods do, how to use them,
and where to find them in the literature. Numerous built-in data sets from
regulatory guidance documents and environmental statistics literature. Includes
scripts reproducing analyses presented in the book "EnvStats: An R Package for
Environmental Statistics" (Millard, 2013, Springer).
Author: Steven P. Millard
Maintainer: Steven P. Millard
DESCRIPTION | 23 +
MD5 | 278 ++++++++++++------------
NAMESPACE | 11
NEWS | 34 ++
R/calibrate.R | 1
R/check.distribution.args.R | 9
R/check.distribution.args.simulate.R | 9
R/detectionLimitCalibrate.R | 6
R/elnorm3.R | 19 -
R/errorBar.R | 100 ++++----
R/gofGroupTest.formula.R | 2
R/gofTest.formula.R | 2
R/inversePredictCalibrate.R | 6
R/kendallSeasonalTrendTest.formula.R | 2
R/kendallTrendTest.formula.R | 2
R/pointwise.R | 4
R/predict.R |only
R/predict.default.R |only
R/predict.lm.R | 33 +-
R/print.R |only
R/print.default.R |only
R/simulateMvMatrix.R | 2
R/simulateVector.R | 2
R/stripChart.default.R | 24 +-
R/stripChart.formula.R | 2
R/summaryFull.formula.R | 2
R/summaryStats.character.R |only
R/summaryStats.formula.R | 2
R/summaryStats.logical.R |only
R/varGroupTest.formula.R | 2
data/Air.df.rda |binary
data/Benthic.df.rda |binary
data/Distribution.df.rda |binary
data/EPA.02d.Ex.2.ug.per.L.vec.rda |binary
data/EPA.02d.Ex.4.mg.per.kg.vec.rda |binary
data/EPA.02d.Ex.6.mg.per.kg.vec.rda |binary
data/EPA.02d.Ex.9.mg.per.L.vec.rda |binary
data/EPA.09.Ex.10.1.nickel.df.rda |binary
data/EPA.09.Ex.11.1.arsenic.df.rda |binary
data/EPA.09.Ex.12.1.ccl4.df.rda |binary
data/EPA.09.Ex.12.4.naphthalene.df.rda |binary
data/EPA.09.Ex.13.1.iron.df.rda |binary
data/EPA.09.Ex.14.1.manganese.df.rda |binary
data/EPA.09.Ex.14.3.alkalinity.df.rda |binary
data/EPA.09.Ex.14.4.arsenic.df.rda |binary
data/EPA.09.Ex.14.8.df.rda |binary
data/EPA.09.Ex.15.1.manganese.df.rda |binary
data/EPA.09.Ex.16.1.sulfate.df.rda |binary
data/EPA.09.Ex.16.2.benzene.df.rda |binary
data/EPA.09.Ex.16.4.copper.df.rda |binary
data/EPA.09.Ex.16.5.PCE.df.rda |binary
data/EPA.09.Ex.17.1.loglead.df.rda |binary
data/EPA.09.Ex.17.2.toluene.df.rda |binary
data/EPA.09.Ex.17.3.chrysene.df.rda |binary
data/EPA.09.Ex.17.3.log.chrysene.df.rda |binary
data/EPA.09.Ex.17.4.copper.df.rda |binary
data/EPA.09.Ex.17.5.chloride.df.rda |binary
data/EPA.09.Ex.17.6.sulfate.df.rda |binary
data/EPA.09.Ex.17.7.sodium.df.rda |binary
data/EPA.09.Ex.18.1.arsenic.df.rda |binary
data/EPA.09.Ex.18.2.chrysene.df.rda |binary
data/EPA.09.Ex.18.3.TCE.df.rda |binary
data/EPA.09.Ex.18.4.xylene.df.rda |binary
data/EPA.09.Ex.19.1.sulfate.df.rda |binary
data/EPA.09.Ex.19.2.chloride.df.rda |binary
data/EPA.09.Ex.19.5.mercury.df.rda |binary
data/EPA.09.Ex.20.1.nickel.df.rda |binary
data/EPA.09.Ex.21.1.aldicarb.df.rda |binary
data/EPA.09.Ex.21.2.benzene.df.rda |binary
data/EPA.09.Ex.21.5.beryllium.df.rda |binary
data/EPA.09.Ex.21.6.nitrate.df.rda |binary
data/EPA.09.Ex.21.7.TCE.df.rda |binary
data/EPA.09.Ex.22.1.VC.df.rda |binary
data/EPA.09.Ex.22.2.Specific.Conductance.df.rda |binary
data/EPA.09.Ex.6.3.sulfate.df.rda |binary
data/EPA.09.Ex.7.1.arsenic.df.rda |binary
data/EPA.09.Table.9.1.TCE.df.rda |binary
data/EPA.09.Table.9.3.df.rda |binary
data/EPA.09.Table.9.4.nickel.vec.rda |binary
data/EPA.89b.aldicarb1.df.rda |binary
data/EPA.89b.aldicarb2.df.rda |binary
data/EPA.89b.benzene.df.rda |binary
data/EPA.89b.cadmium.df.rda |binary
data/EPA.89b.chlordane1.df.rda |binary
data/EPA.89b.chlordane2.df.rda |binary
data/EPA.89b.edb.df.rda |binary
data/EPA.89b.lead.df.rda |binary
data/EPA.89b.loglead.df.rda |binary
data/EPA.89b.manganese.df.rda |binary
data/EPA.89b.sulfate.df.rda |binary
data/EPA.89b.t29.df.rda |binary
data/EPA.89b.toc.vec.rda |binary
data/EPA.92c.arsenic1.df.rda |binary
data/EPA.92c.arsenic2.df.rda |binary
data/EPA.92c.arsenic3.df.rda |binary
data/EPA.92c.benzene1.df.rda |binary
data/EPA.92c.benzene2.df.rda |binary
data/EPA.92c.ccl4.df.rda |binary
data/EPA.92c.chrysene.df.rda |binary
data/EPA.92c.copper1.df.rda |binary
data/EPA.92c.copper2.df.rda |binary
data/EPA.92c.lognickel1.df.rda |binary
data/EPA.92c.nickel1.df.rda |binary
data/EPA.92c.nickel2.df.rda |binary
data/EPA.92c.toluene.df.rda |binary
data/EPA.92c.zinc.df.rda |binary
data/EPA.92d.chromium.df.rda |binary
data/EPA.92d.chromium.vec.rda |binary
data/EPA.94b.lead.df.rda |binary
data/EPA.94b.tccb.df.rda |binary
data/EPA.97.cadmium.111.df.rda |binary
data/Environmental.df.rda |binary
data/Gibbons.et.al.09.Alkilinity.vec.rda |binary
data/Gibbons.et.al.09.Vinyl.Chloride.vec.rda |binary
data/Graham.et.al.75.etu.df.rda |binary
data/Helsel.Cohn.88.app.b.df.rda |binary
data/Helsel.Cohn.88.silver.df.rda |binary
data/Lin.Evans.80.df.rda |binary
data/Millard.Deverel.88.df.rda |binary
data/Modified.TcCB.df.rda |binary
data/NIOSH.89.air.lead.vec.rda |binary
data/Olympic.NH4.df.rda |binary
data/Ozone.NE.df.rda |binary
data/Refinery.CO.df.rda |binary
data/Skagit.NH3_N.df.rda |binary
data/Total.P.df.rda |binary
inst/doc/EnvStats-manual.pdf |binary
man/Distribution.df.Rd | 4
man/EnvStats-package.Rd | 46 ++-
man/calibrate.Rd | 9
man/calibrate.object.Rd |only
man/detectionLimitCalibrate.Rd | 3
man/elnorm3.Rd | 6
man/errorBar.Rd |only
man/inversePredictCalibrate.Rd | 26 +-
man/kendallSeasonalTrendTest.Rd | 2
man/kendallTrendTest.Rd | 2
man/pointwise.Rd | 26 +-
man/predict.Rd |only
man/predict.lm.Rd | 152 +++----------
man/print.Rd |only
man/print.htest.Rd | 14 -
man/simulateMvMatrix.Rd | 2
man/simulateVector.Rd | 2
man/stripChart.Rd | 21 +
145 files changed, 457 insertions(+), 435 deletions(-)
Title: Estimation of (Local) False Discovery Rates and Higher Criticism
Diff between fdrtool versions 1.2.13 dated 2014-11-14 and 1.2.14 dated 2015-03-09
Description: Estimates both tail area-based false
discovery rates (Fdr) as well as local false discovery rates (fdr) for a
variety of null models (p-values, z-scores, correlation coefficients,
t-scores). The proportion of null values and the parameters of the null
distribution are adaptively estimated from the data. In addition, the package
contains functions for non-parametric density estimation (Grenander estimator),
for monotone regression (isotonic regression and antitonic regression with weights),
for computing the greatest convex minorant (GCM) and the least concave majorant (LCM),
for the half-normal and correlation distributions, and for computing
empirical higher criticism (HC) scores and the corresponding decision threshold.
Author: Bernd Klaus and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NAMESPACE | 4 ++++
NEWS | 6 ++++++
man/pval.estimate.eta0.Rd | 3 +--
5 files changed, 20 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-09 0.3-1
Title: Interface to the Global Biodiversity Information Facility API
Diff between rgbif versions 0.7.7 dated 2014-11-06 and 0.8.0 dated 2015-03-09
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF).
GBIF is a database of species occurrence records from sources all
over the globe. rgbif includes functions for searching for
taxonomic names, retrieving information on data providers,
getting species occurrence records, and getting counts of
occurrence records.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Vijay Barve [aut],
Dan Mcglinn [aut]
Maintainer: Scott Chamberlain
DESCRIPTION | 14
LICENSE | 4
MD5 | 231 ++++++-------
NAMESPACE | 3
NEWS | 25 +
R/check_wkt.r | 14
R/count_facet.r | 37 +-
R/dataset_search.r | 10
R/dataset_suggest.r | 51 +-
R/datasets.r | 6
R/elevation.r | 18 -
R/gbif_names.R | 14
R/gbifmap.r | 2
R/installations.r | 31 -
R/name_backbone.r | 54 +--
R/name_lookup.r | 8
R/name_suggest.r | 37 +-
R/name_usage.r | 152 ++++----
R/networks.r | 19 -
R/nodes.r | 29 -
R/occ_count.r | 2
R/occ_get.r | 44 +-
R/occ_issues.r | 21 -
R/occ_issues_lookup.r | 3
R/occ_metadata.r | 39 --
R/occ_search.r | 230 +++----------
R/organizations.r | 67 +--
R/parsenames.R | 18 -
R/rgbif-package.r | 18 -
R/tbl_df_utils.R |only
R/zzz.r | 92 +++--
README.md | 298 +++++++++--------
inst/assets/img/unnamed-chunk-8-1.png |only
inst/doc/issues_vignette.Rmd | 182 ++++------
inst/doc/issues_vignette.html | 182 ++++------
inst/doc/rgbif_vignette.html | 579 +++++++++++++++++++++-------------
inst/vign/figure/gbifmap1-1.png |only
inst/vign/issues_vignette.Rmd | 4
inst/vign/issues_vignette.md | 182 ++++------
inst/vign/rgbif_vignette.Rmd | 2
inst/vign/rgbif_vignette.md | 579 +++++++++++++++++++++-------------
man/blanktheme.Rd | 3
man/check_wkt.Rd | 3
man/commas_to_periods.Rd | 3
man/count_facet.Rd | 9
man/create_gist.Rd | 3
man/dataset_metrics.Rd | 3
man/dataset_search.Rd | 11
man/dataset_suggest.Rd | 11
man/datasetparser.Rd | 3
man/datasets.Rd | 11
man/density_spplist.Rd | 3
man/densitylist.Rd | 3
man/elevation.Rd | 3
man/gbif_bbox2wkt.Rd | 5
man/gbif_capwords.Rd | 3
man/gbif_issues.Rd | 3
man/gbif_names.Rd | 7
man/gbif_photos.Rd | 3
man/gbifdata.Rd | 3
man/gbifmap.Rd | 5
man/gbifmap_dens.Rd | 3
man/gbifmap_list.Rd | 3
man/gbifparser.Rd | 3
man/gbifparser_verbatim.Rd | 3
man/get_credentials.Rd | 3
man/gist.Rd | 3
man/installations.Rd | 11
man/isocodes.Rd | 3
man/ldfast.Rd | 3
man/name_backbone.Rd | 11
man/name_lookup.Rd | 17
man/name_suggest.Rd | 11
man/name_usage.Rd | 44 +-
man/namelkupparser.Rd | 3
man/networks.Rd | 11
man/nodes.Rd | 11
man/occ_count.Rd | 3
man/occ_fields.Rd | 3
man/occ_get.Rd | 8
man/occ_issues.Rd | 17
man/occ_issues_lookup.Rd | 5
man/occ_metadata.Rd | 3
man/occ_search.Rd | 49 +-
man/occurrencecount.Rd | 3
man/occurrencedensity.Rd | 3
man/occurrenceget.Rd | 3
man/occurrencelist.Rd | 3
man/occurrencelist_all.Rd | 3
man/occurrencelist_many.Rd | 3
man/organizations.Rd | 11
man/parsenames.Rd | 3
man/parseresults.Rd | 3
man/pipe.Rd | 3
man/providers.Rd | 3
man/resources.Rd | 3
man/rgb_country_codes.Rd | 3
man/rgbif-defunct.Rd | 3
man/rgbif-package.Rd | 21 -
man/stylegeojson.Rd | 3
man/suggestfields.Rd | 3
man/taxoncount.Rd | 3
man/taxonget.Rd | 3
man/taxonsearch.Rd | 3
man/taxrank.Rd | 3
man/togeojson.Rd | 3
man/type_sum.Rd | 3
man/typestatus.Rd | 3
tests/testthat/test-count_facet.r |only
tests/testthat/test-name_backbone.r | 4
tests/testthat/test-name_lookup.r | 2
tests/testthat/test-name_usage.r | 31 +
tests/testthat/test-nodes.r | 2
tests/testthat/test-occ_get.r | 4
tests/testthat/test-occ_metadata.r | 8
tests/testthat/test-occ_search.r | 4
vignettes/figure/gbifmap1-1.png |only
vignettes/issues_vignette.Rmd | 182 ++++------
vignettes/rgbif_vignette.Rmd | 579 +++++++++++++++++++++-------------
119 files changed, 2508 insertions(+), 2036 deletions(-)
Title: Sequence Statistics for Relational Event Models
Diff between informR versions 1.0.04 dated 2012-04-07 and 1.0-5 dated 2015-03-09
Description: Aids in creating sequence statistics for Butts's 'relevent' software.
Author: Christopher Steven Marcum
Maintainer: Christopher Steven Marcum
ChangeLog | 9 +++++++++
DESCRIPTION | 20 +++++++++-----------
MD5 | 23 ++++++++++++-----------
NAMESPACE | 6 +++++-
R/slbind.R | 1 -
R/slbind.cov.R | 1 -
R/sldrop.R | 1 -
R/zzz.R | 29 ++++++++++++++++-------------
data/atus80int.rda |binary
data/atus80ord.rda |binary
inst |only
man/gen.sformlist.Rd | 2 --
man/glb.sformlist.Rd | 3 ++-
13 files changed, 53 insertions(+), 42 deletions(-)
Title: Probabilities for Pedigrees Given DNA Data
Diff between Familias versions 2.1 dated 2014-08-01 and 2.2 dated 2015-03-09
Description:
An interface to the core Familias functions (www.familias.name),
which are programmed in C++.
Author: Petter Mostad and Thore Egeland
Maintainer: Petter Mostad
DESCRIPTION | 17 -
MD5 | 22 +-
NAMESPACE | 4
R/FamiliasLocus.R | 452 ++++++++++++++++++++++++-----------------
R/FamiliasPosterior.R | 472 ++++++++++++++++++++-----------------------
R/plot.FamiliasPedigree.R |only
data |only
man/Familias-package.Rd | 14 -
man/FamiliasLocus.Rd | 166 ++++++++++-----
man/FamiliasPedigree.Rd | 14 -
man/FamiliasPosterior.Rd | 31 +-
man/FamiliasPrior.Rd | 13 -
man/NorwegianFrequencies.Rd |only
man/plot.FamiliasPedigree.Rd |only
14 files changed, 669 insertions(+), 536 deletions(-)
Title: A Dynamic Nomogram for Linear and Generalized Linear Models as
Shiny Applications
Diff between DynNom versions 1.0 dated 2014-10-04 and 1.0.1 dated 2015-03-09
Description: The DynNom function makes it possible to present the results of an
lm or glm model object as a dynamic nomogram that can be displayed in an R
Studio panel or web browser.
Author: Amirhossein Jalali, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali
DESCRIPTION | 6 +++---
MD5 | 6 +++---
man/DynNom-package.Rd | 12 ++++++++----
man/DynNom.Rd | 10 +++++++---
4 files changed, 21 insertions(+), 13 deletions(-)
Title: High-Dimensional Regression and CAR Score Variable Selection
Diff between care versions 1.1.7 dated 2014-11-23 and 1.1.8 dated 2015-03-09
Description: The "care" package implements the regression approach
of Zuber and Strimmer (2011) "High-dimensional regression and variable
selection using CAR scores" SAGMB 10: 34.
CAR scores measure the correlation between the response and the
Mahalanobis-decorrelated predictors. The squared CAR score is a
natural measure of variable importance and provides a canonical
ordering of variables. This package provides functions for estimating
CAR scores, for variable selection using CAR scores, and for estimating
corresponding regression coefficients. Both shrinkage as well as
empirical estimators are available.
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NAMESPACE | 1 +
NEWS | 6 ++++++
4 files changed, 14 insertions(+), 7 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Diff between HSAUR3 versions 1.0-3 dated 2015-01-05 and 1.0-4 dated 2015-03-09
Description: Functions, data sets, analyses and examples from the
third edition of the book
`A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
DESCRIPTION | 8 -
MD5 | 138 ++++++++++++-------------
inst/NEWS | 4
inst/doc/Ch_analysing_longitudinal_dataI.Rnw | 19 ++-
inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
inst/doc/Ch_analysing_longitudinal_dataII.Rnw | 13 ++
inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
inst/doc/Ch_analysis_of_variance.Rnw | 13 ++
inst/doc/Ch_analysis_of_variance.pdf |binary
inst/doc/Ch_bayesian_inference.Rnw | 13 ++
inst/doc/Ch_bayesian_inference.pdf |binary
inst/doc/Ch_cluster_analysis.Rnw | 13 ++
inst/doc/Ch_cluster_analysis.pdf |binary
inst/doc/Ch_conditional_inference.Rnw | 13 ++
inst/doc/Ch_conditional_inference.pdf |binary
inst/doc/Ch_density_estimation.Rnw | 13 ++
inst/doc/Ch_density_estimation.pdf |binary
inst/doc/Ch_errata.Rnw | 13 ++
inst/doc/Ch_errata.pdf |binary
inst/doc/Ch_gam.Rnw | 13 ++
inst/doc/Ch_gam.pdf |binary
inst/doc/Ch_graphical_display.R | 2
inst/doc/Ch_graphical_display.Rnw | 15 ++
inst/doc/Ch_graphical_display.pdf |binary
inst/doc/Ch_introduction_to_R.Rnw | 13 ++
inst/doc/Ch_introduction_to_R.pdf |binary
inst/doc/Ch_logistic_regression_glm.Rnw | 13 ++
inst/doc/Ch_logistic_regression_glm.pdf |binary
inst/doc/Ch_meta_analysis.Rnw | 13 ++
inst/doc/Ch_meta_analysis.pdf |binary
inst/doc/Ch_missing_values.Rnw | 13 ++
inst/doc/Ch_missing_values.pdf |binary
inst/doc/Ch_multidimensional_scaling.Rnw | 13 ++
inst/doc/Ch_multidimensional_scaling.pdf |binary
inst/doc/Ch_multiple_linear_regression.Rnw | 13 ++
inst/doc/Ch_multiple_linear_regression.pdf |binary
inst/doc/Ch_principal_components_analysis.Rnw | 26 ++--
inst/doc/Ch_principal_components_analysis.pdf |binary
inst/doc/Ch_quantile_regression.Rnw | 15 ++
inst/doc/Ch_quantile_regression.pdf |binary
inst/doc/Ch_recursive_partitioning.Rnw | 13 ++
inst/doc/Ch_recursive_partitioning.pdf |binary
inst/doc/Ch_simple_inference.Rnw | 13 ++
inst/doc/Ch_simple_inference.pdf |binary
inst/doc/Ch_simultaneous_inference.Rnw | 13 ++
inst/doc/Ch_simultaneous_inference.pdf |binary
inst/doc/Ch_survival_analysis.Rnw | 13 ++
inst/doc/Ch_survival_analysis.pdf |binary
vignettes/Ch_analysing_longitudinal_dataI.Rnw | 19 ++-
vignettes/Ch_analysing_longitudinal_dataII.Rnw | 13 ++
vignettes/Ch_analysis_of_variance.Rnw | 13 ++
vignettes/Ch_bayesian_inference.Rnw | 13 ++
vignettes/Ch_cluster_analysis.Rnw | 13 ++
vignettes/Ch_conditional_inference.Rnw | 13 ++
vignettes/Ch_density_estimation.Rnw | 13 ++
vignettes/Ch_errata.Rnw | 13 ++
vignettes/Ch_gam.Rnw | 13 ++
vignettes/Ch_graphical_display.Rnw | 15 ++
vignettes/Ch_introduction_to_R.Rnw | 13 ++
vignettes/Ch_logistic_regression_glm.Rnw | 13 ++
vignettes/Ch_meta_analysis.Rnw | 13 ++
vignettes/Ch_missing_values.Rnw | 13 ++
vignettes/Ch_multidimensional_scaling.Rnw | 13 ++
vignettes/Ch_multiple_linear_regression.Rnw | 13 ++
vignettes/Ch_principal_components_analysis.Rnw | 26 ++--
vignettes/Ch_quantile_regression.Rnw | 15 ++
vignettes/Ch_recursive_partitioning.Rnw | 13 ++
vignettes/Ch_simple_inference.Rnw | 13 ++
vignettes/Ch_simultaneous_inference.Rnw | 13 ++
vignettes/Ch_survival_analysis.Rnw | 13 ++
70 files changed, 652 insertions(+), 118 deletions(-)
Title: Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Diff between BBEST versions 0.1-2 dated 2015-02-06 and 0.1-3 dated 2015-03-09
Description: We implemented a Bayesian-statistics approach for
subtraction of incoherent scattering from neutron total-scattering data.
In this approach, the estimated background signal associated with
incoherent scattering maximizes the posterior probability, which combines
the likelihood of this signal in reciprocal and real spaces with the prior
that favors smooth lines.
Author: Anton Gagin and Igor Levin with contributions from Charles R. Hogg III
Maintainer: Anton Gagin
ChangeLog |only
DESCRIPTION | 6 +--
MD5 | 15 +++++----
NAMESPACE | 2 -
R/fits.R | 16 +++++-----
R/interface.R | 83 +++++++++++++++++++++++++++++++++++++++++++++++-------
inst/gui/server.R | 18 +++++++++--
inst/gui/ui.R | 1
man/merge.fix.Rd |only
man/split.sqa.Rd |only
10 files changed, 110 insertions(+), 31 deletions(-)
Title: Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Diff between SGCS versions 2.0 dated 2014-03-09 and 2.3 dated 2015-03-09
Description: Graph based clustering summaries for spatial point patterns. Includes Connectivity function,
Cumulative connectivity function and clustering function, plus the triangle/triplet intensity function T.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala
SGCS-2.0/SGCS/R/First.R |only
SGCS-2.0/SGCS/R/Kfun.R |only
SGCS-2.0/SGCS/R/Tfun.R |only
SGCS-2.0/SGCS/R/clustfun.R |only
SGCS-2.0/SGCS/R/confun.R |only
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SGCS-2.0/SGCS/src/Components.cpp |only
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SGCS-2.3/SGCS/DESCRIPTION | 15 -
SGCS-2.3/SGCS/MD5 | 88 +++++----
SGCS-2.3/SGCS/NAMESPACE | 19 +
SGCS-2.3/SGCS/R/K-function.R |only
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SGCS-2.3/SGCS/R/T-function.R |only
SGCS-2.3/SGCS/R/bounding-box-xy.R |only
SGCS-2.3/SGCS/R/clustering-function.R |only
SGCS-2.3/SGCS/R/connectivity-function.R |only
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SGCS-2.3/SGCS/R/edge-distance.R |only
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SGCS-2.3/SGCS/R/internalise_pp.R |only
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SGCS-2.3/SGCS/src/Graph.cpp | 224 ++++++++--------------
SGCS-2.3/SGCS/src/Graph.h | 62 ++----
SGCS-2.3/SGCS/src/Kfun.cpp | 89 ++++-----
SGCS-2.3/SGCS/src/Pp.cpp | 293 +++++++++++++++++++++++-------
SGCS-2.3/SGCS/src/Pp.h | 92 +++++++--
SGCS-2.3/SGCS/src/Rextras.cpp | 47 +++-
SGCS-2.3/SGCS/src/Rextras.h | 6
SGCS-2.3/SGCS/src/Rfun.cpp |only
SGCS-2.3/SGCS/src/Tfun.cpp | 119 +++++-------
SGCS-2.3/SGCS/src/arcs.cpp |only
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77 files changed, 618 insertions(+), 436 deletions(-)
Title: Parsing Command-Line Arguments and Variable Interpolation
Diff between GetoptLong versions 0.0.9 dated 2015-01-29 and 0.1.0 dated 2015-03-09
Description: This is yet another command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptation for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu
GetoptLong-0.0.9/GetoptLong/R/overview.R |only
GetoptLong-0.0.9/GetoptLong/man/GetoptLong-package.rd |only
GetoptLong-0.1.0/GetoptLong/DESCRIPTION | 17 -
GetoptLong-0.1.0/GetoptLong/MD5 | 27 +-
GetoptLong-0.1.0/GetoptLong/NAMESPACE | 19 -
GetoptLong-0.1.0/GetoptLong/NEWS | 8
GetoptLong-0.1.0/GetoptLong/R/GetoptLong.R | 37 +++
GetoptLong-0.1.0/GetoptLong/inst/doc/GetoptLong.pdf |binary
GetoptLong-0.1.0/GetoptLong/inst/doc/variable_interpolation.pdf |binary
GetoptLong-0.1.0/GetoptLong/man/GetOptions.rd |only
GetoptLong-0.1.0/GetoptLong/man/GetoptLong.options.rd | 64 +++---
GetoptLong-0.1.0/GetoptLong/man/GetoptLong.rd | 79 ++++---
GetoptLong-0.1.0/GetoptLong/man/get_scriptname.rd | 40 +--
GetoptLong-0.1.0/GetoptLong/man/qq.options.rd | 64 +++---
GetoptLong-0.1.0/GetoptLong/man/qq.rd | 63 +++---
GetoptLong-0.1.0/GetoptLong/man/qqcat.rd | 104 +++++-----
16 files changed, 297 insertions(+), 225 deletions(-)
Title: Client for the HuffPost Pollster API
Diff between pollstR versions 1.1.1 dated 2014-10-30 and 1.2.0 dated 2015-03-09
Description: Client for the HuffPost Pollster API, which provides
access to U.S. opinion polls since 2004.
Author: Jeffrey B. Arnold [aut, cre],
Thomas J. Leeper [aut]
Maintainer: Jeffrey B. Arnold
pollstR-1.1.1/pollstR/inst/vign-src/children/introduction.md |only
pollstR-1.2.0/pollstR/DESCRIPTION | 14
pollstR-1.2.0/pollstR/MD5 | 43
pollstR-1.2.0/pollstR/NAMESPACE | 2
pollstR-1.2.0/pollstR/NEWS | 4
pollstR-1.2.0/pollstR/R/chart.R | 5
pollstR-1.2.0/pollstR/R/charts.R | 102 -
pollstR-1.2.0/pollstR/R/polls.R | 260 ++--
pollstR-1.2.0/pollstR/build/vignette.rds |binary
pollstR-1.2.0/pollstR/inst/doc/introduction.Rmd | 143 +-
pollstR-1.2.0/pollstR/inst/doc/introduction.html | 628 +++-------
pollstR-1.2.0/pollstR/inst/vign-src/children/intro.Rmd | 2
pollstR-1.2.0/pollstR/inst/vign-src/figures/obama-favorable-chart-1.png |binary
pollstR-1.2.0/pollstR/inst/vign-src/figures/obama-favorable-chart-2-1.png |binary
pollstR-1.2.0/pollstR/inst/vign-src/introduction.Rmd | 14
pollstR-1.2.0/pollstR/inst/vign-src/introduction.md | 143 +-
pollstR-1.2.0/pollstR/man/pollstR.Rd | 3
pollstR-1.2.0/pollstR/man/pollstr_chart.Rd | 8
pollstR-1.2.0/pollstR/man/pollstr_charts.Rd | 23
pollstR-1.2.0/pollstR/man/pollstr_polls.Rd | 18
pollstR-1.2.0/pollstR/vignettes/assets/obama-favorable-chart-1.png |binary
pollstR-1.2.0/pollstR/vignettes/assets/obama-favorable-chart-2-1.png |binary
pollstR-1.2.0/pollstR/vignettes/introduction.Rmd | 143 +-
23 files changed, 691 insertions(+), 864 deletions(-)
Title: Analysis of Evolutionary Rates in an OU Framework
Diff between OUwie versions 1.44 dated 2015-02-19 and 1.45 dated 2015-03-09
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy Beaulieu
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/OUwie.R | 2 +-
R/OUwie.slice.R | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Desirability Function Optimization and Ranking
Diff between desirability versions 1.6 dated 2014-01-16 and 1.9 dated 2015-03-09
Description: S3 classes for multivariate optimization using the desirability function by Derringer and Suich (1980).
Author: Max Kuhn
Maintainer: Max Kuhn
desirability-1.6/desirability/inst/NEWS |only
desirability-1.9/desirability/DESCRIPTION | 13 -
desirability-1.9/desirability/MD5 | 10
desirability-1.9/desirability/R/predict.R | 193 +++++++---------
desirability-1.9/desirability/build/vignette.rds |binary
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desirability-1.9/desirability/inst/doc/desirability.pdf |binary
7 files changed, 104 insertions(+), 112 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Diff between deldir versions 0.1-7 dated 2014-11-27 and 0.1-9 dated 2015-03-09
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 68 +++++++++++++++++++++++++++++++++++++++++++-----
DESCRIPTION | 12 ++++----
MD5 | 40 ++++++++++++++--------------
NAMESPACE | 4 ++
R/deldir.R | 6 ++--
R/plot.tile.list.R | 21 +++++++-------
R/plot.triang.list.R | 2 -
R/tile.list.R | 6 ++++
R/triMat.R | 4 +-
R/triang.list.R | 3 +-
man/deldir-internal.Rd | 2 +
man/deldir.Rd | 7 ++++
man/duplicatedxy.Rd | 2 -
man/plot.deldir.Rd | 2 -
man/plot.tile.list.Rd | 2 -
man/plot.triang.list.Rd | 2 -
man/tile.centroids.Rd | 2 -
man/tile.list.Rd | 2 -
man/tilePerim.Rd | 2 -
man/triMat.Rd | 2 -
man/triang.list.Rd | 2 -
21 files changed, 135 insertions(+), 58 deletions(-)
Title: C5.0 Decision Trees and Rule-Based Models
Diff between C50 versions 0.1.0-21 dated 2014-11-18 and 0.1.0-24 dated 2015-03-09
Description: C5.0 decision trees and rule-based models for pattern recognition.
Author: Max Kuhn, Steve Weston, Nathan Coulter, Mark Culp. C code for C5.0 by R. Quinlan
Maintainer: Max Kuhn
DESCRIPTION | 13 +++++++------
MD5 | 8 +++++---
NAMESPACE | 6 ++++++
R/C5.0.R | 2 +-
R/as.party.C5.0.R |only
man/plot.C5.0.Rd |only
6 files changed, 19 insertions(+), 10 deletions(-)