Mon, 09 Mar 2015

Package longitudinal updated to version 1.1.11 with previous version 1.1.10 dated 2014-11-14

Title: Analysis of Multiple Time Course Data
Description: Contains general data structures and functions for longitudinal data with multiple variables, repeated measurements, and irregularly spaced time points. Also implements a shrinkage estimator of dynamical correlation and dynamical covariance.
Author: Rainer Opgen-Rhein and Korbinian Strimmer.
Maintainer: Korbinian Strimmer

Diff between longitudinal versions 1.1.10 dated 2014-11-14 and 1.1.11 dated 2015-03-09

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More information about longitudinal at CRAN
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Package EnvStats updated to version 2.0.0 with previous version 1.0.3 dated 2014-10-21

Title: Package for Environmental Statistics, Including US EPA Guidance
Description: Graphical and statistical analyses of environmental data, with focus on analyzing chemical concentrations and physical parameters, usually in the context of mandated environmental monitoring. Major environmental statistical methods found in the literature and regulatory guidance documents, with extensive help that explains what these methods do, how to use them, and where to find them in the literature. Numerous built-in data sets from regulatory guidance documents and environmental statistics literature. Includes scripts reproducing analyses presented in the book "EnvStats: An R Package for Environmental Statistics" (Millard, 2013, Springer).
Author: Steven P. Millard
Maintainer: Steven P. Millard

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Package fdrtool updated to version 1.2.14 with previous version 1.2.13 dated 2014-11-14

Title: Estimation of (Local) False Discovery Rates and Higher Criticism
Description: Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
Author: Bernd Klaus and Korbinian Strimmer.
Maintainer: Korbinian Strimmer

Diff between fdrtool versions 1.2.13 dated 2014-11-14 and 1.2.14 dated 2015-03-09

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Package histmdl (with last version 0.3-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-09 0.3-1

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New package SensusR with initial version 1.0
Package: SensusR
Type: Package
Title: Sensus Analytics
Version: 1.0
Date: 2015-03-05
Author: Matthew S. Gerber
Maintainer: Matthew S. Gerber
Description: Provides access and analytic functions for Sensus data.
License: GPL-3
Copyright: The Rector and Visitors of the University of Virginia
URL: https://github.com/MatthewGerber/sensus/wiki
Imports: jsonlite (>= 0.9.14), lubridate (>= 1.3.3), rworldmap (>= 1.3-1), plyr (>= 1.8.1), sp (>= 1.0-16)
NeedsCompilation: no
Packaged: 2015-03-09 19:12:21 UTC; matt
Repository: CRAN
Date/Publication: 2015-03-09 20:43:37

More information about SensusR at CRAN
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Package rgbif updated to version 0.8.0 with previous version 0.7.7 dated 2014-11-06

Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility (GBIF). GBIF is a database of species occurrence records from sources all over the globe. rgbif includes functions for searching for taxonomic names, retrieving information on data providers, getting species occurrence records, and getting counts of occurrence records.
Author: Scott Chamberlain [aut, cre], Karthik Ram [aut], Vijay Barve [aut], Dan Mcglinn [aut]
Maintainer: Scott Chamberlain

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Package informR updated to version 1.0-5 with previous version 1.0.04 dated 2012-04-07

Title: Sequence Statistics for Relational Event Models
Description: Aids in creating sequence statistics for Butts's 'relevent' software.
Author: Christopher Steven Marcum
Maintainer: Christopher Steven Marcum

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Package Familias updated to version 2.2 with previous version 2.1 dated 2014-08-01

Title: Probabilities for Pedigrees Given DNA Data
Description: An interface to the core Familias functions (www.familias.name), which are programmed in C++.
Author: Petter Mostad and Thore Egeland
Maintainer: Petter Mostad

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Package DynNom updated to version 1.0.1 with previous version 1.0 dated 2014-10-04

Title: A Dynamic Nomogram for Linear and Generalized Linear Models as Shiny Applications
Description: The DynNom function makes it possible to present the results of an lm or glm model object as a dynamic nomogram that can be displayed in an R Studio panel or web browser.
Author: Amirhossein Jalali, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali

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Package care updated to version 1.1.8 with previous version 1.1.7 dated 2014-11-23

Title: High-Dimensional Regression and CAR Score Variable Selection
Description: The "care" package implements the regression approach of Zuber and Strimmer (2011) "High-dimensional regression and variable selection using CAR scores" SAGMB 10: 34. CAR scores measure the correlation between the response and the Mahalanobis-decorrelated predictors. The squared CAR score is a natural measure of variable importance and provides a canonical ordering of variables. This package provides functions for estimating CAR scores, for variable selection using CAR scores, and for estimating corresponding regression coefficients. Both shrinkage as well as empirical estimators are available.
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer

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Package HSAUR3 updated to version 1.0-4 with previous version 1.0-3 dated 2015-01-05

Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the third edition of the book `A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S. Everitt, Chapman & Hall/CRC, 2014). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, Sweave source code for slides of selected chapters is included in this package (see HSAUR3/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn

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New package histmdl with initial version 0.3-1
Package: histmdl
Type: Package
Title: A Most Informative Histogram-Like Model
Version: 0.3-1
Date: 2015-02-19
Author: Jouke Witteveen
Maintainer: Jouke Witteveen
Description: Using the MDL principle, it is possible to estimate parameters for a histogram-like model. The package contains the implementation of such an estimation method.
License: GPL (>= 2)
ByteCompile: yes
Packaged: 2015-03-09 14:04:34 UTC; jouke
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-09 16:24:03

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Package BBEST updated to version 0.1-3 with previous version 0.1-2 dated 2015-02-06

Title: Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Description: We implemented a Bayesian-statistics approach for subtraction of incoherent scattering from neutron total-scattering data. In this approach, the estimated background signal associated with incoherent scattering maximizes the posterior probability, which combines the likelihood of this signal in reciprocal and real spaces with the prior that favors smooth lines.
Author: Anton Gagin and Igor Levin with contributions from Charles R. Hogg III
Maintainer: Anton Gagin

Diff between BBEST versions 0.1-2 dated 2015-02-06 and 0.1-3 dated 2015-03-09

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Package SGCS updated to version 2.3 with previous version 2.0 dated 2014-03-09

Title: Spatial Graph Based Clustering Summaries for Spatial Point Patterns
Description: Graph based clustering summaries for spatial point patterns. Includes Connectivity function, Cumulative connectivity function and clustering function, plus the triangle/triplet intensity function T.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala

Diff between SGCS versions 2.0 dated 2014-03-09 and 2.3 dated 2015-03-09

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New package cOde with initial version 0.1
Package: cOde
Type: Package
Title: Automated C Code Generation for Use with the "deSolve" and "bvpSolve"" Packages
Version: 0.1
Depends: R (>= 3.0)
Suggests: deSolve, bvpSolve
Date: 2015-03-05
Author: Daniel Kaschek
Maintainer: Daniel Kaschek
Description: Generates all necessary C functions allowing the user to work with the compiled-code interface of ode() and bvptwp(). The implementation supports "forcings" and "events". The package also provides functions to symbolically compute Jacobians, sensitivity equations and adjoint sensitivities being the basis for sensitivity analysis.
License: GPL (>= 2)
Packaged: 2015-03-09 11:50:27 UTC; kaschek
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-09 14:21:45

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Package GetoptLong updated to version 0.1.0 with previous version 0.0.9 dated 2015-01-29

Title: Parsing Command-Line Arguments and Variable Interpolation
Description: This is yet another command-line argument parser which wraps the powerful Perl module Getopt::Long and with some adaptation for easier use in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu

Diff between GetoptLong versions 0.0.9 dated 2015-01-29 and 0.1.0 dated 2015-03-09

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Package pollstR updated to version 1.2.0 with previous version 1.1.1 dated 2014-10-30

Title: Client for the HuffPost Pollster API
Description: Client for the HuffPost Pollster API, which provides access to U.S. opinion polls since 2004.
Author: Jeffrey B. Arnold [aut, cre], Thomas J. Leeper [aut]
Maintainer: Jeffrey B. Arnold

Diff between pollstR versions 1.1.1 dated 2014-10-30 and 1.2.0 dated 2015-03-09

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Package OUwie updated to version 1.45 with previous version 1.44 dated 2015-02-19

Title: Analysis of Evolutionary Rates in an OU Framework
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu , Brian O'Meara
Maintainer: Jeremy Beaulieu

Diff between OUwie versions 1.44 dated 2015-02-19 and 1.45 dated 2015-03-09

 DESCRIPTION     |    8 ++++----
 MD5             |    6 +++---
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 4 files changed, 9 insertions(+), 9 deletions(-)

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New package inferference with initial version 0.4.61
Package: inferference
Type: Package
Title: Methods for Causal Inference with Interference
Version: 0.4.61
Date: 2015-03-08
Author: Bradley Saul
Maintainer: Bradley Saul
Description: Provides methods for estimating causal effects in the presence of interference. Currently it implements the IPW estimators proposed by EJ Tchetgen Tchetgen and TJ Vanderweele in "On causal inference in the presence of interference" (Statistical Methods in Medical Research, 21(1) 55-75).
Depends: R (>= 3.1)
Imports: numDeriv (>= 2012.9-1), lme4 (>= 1.1-6), Formula (>= 1.1-2)
License: GPL (>= 2)
Suggests: testthat, knitr
VignetteBuilder: knitr
LazyData: true
Packaged: 2015-03-08 21:23:57 UTC; bradley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-09 07:39:44

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Package desirability updated to version 1.9 with previous version 1.6 dated 2014-01-16

Title: Desirability Function Optimization and Ranking
Description: S3 classes for multivariate optimization using the desirability function by Derringer and Suich (1980).
Author: Max Kuhn
Maintainer: Max Kuhn

Diff between desirability versions 1.6 dated 2014-01-16 and 1.9 dated 2015-03-09

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Package deldir updated to version 0.1-9 with previous version 0.1-7 dated 2014-11-27

Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet or Voronoi tessellation (with respect to the entire plane) of a planar point set. Plots triangulations and tessellations in various ways. Clips tessellations to sub-windows. Calculates perimeters of tessellations.
Author: Rolf Turner
Maintainer: Rolf Turner

Diff between deldir versions 0.1-7 dated 2014-11-27 and 0.1-9 dated 2015-03-09

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Package C50 updated to version 0.1.0-24 with previous version 0.1.0-21 dated 2014-11-18

Title: C5.0 Decision Trees and Rule-Based Models
Description: C5.0 decision trees and rule-based models for pattern recognition.
Author: Max Kuhn, Steve Weston, Nathan Coulter, Mark Culp. C code for C5.0 by R. Quinlan
Maintainer: Max Kuhn

Diff between C50 versions 0.1.0-21 dated 2014-11-18 and 0.1.0-24 dated 2015-03-09

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