Title: Least-Squares Bilinear Clustering for Three-Way Data
Diff between lsbclust versions 1.0.1 dated 2015-02-16 and 1.0.2 dated 2015-03-11
Description: Functions for performing least-squares bilinear clustering of three-way data. The
method uses the bilinear decomposition (or biadditive model) to model two-way matrix slices
while clustering over the third way. Up to four different types of clusters are included, one
for each term of the bilinear decomposition. In this way, matrices are clustered simultaneously
on (a subset of) their overall means, row margins, column margins and row-column interactions.
The orthogonality of the bilinear model results in separability of the joint clustering problem
into four separate ones. Three of these subproblems are specific k-means problems, while a
special algorithm is implemented for the interactions. Plotting methods are provided, including
biplots for the low-rank approximations of the interactions.
Author: Pieter Schoonees [aut, cre], Patrick Groenen [ctb]
Maintainer: Pieter Schoonees
DESCRIPTION | 8 +++----
MD5 | 25 +++++++++++----------
R/int.lsbclust.R | 9 ++++---
R/lov.R | 33 ++++++++++++++++++-----------
R/lsbclust.R | 58 ++++++++++++++++++++++++++++++++++++++++++---------
R/orc.lsbclust.R | 32 +++++++++++++++++++++-------
R/plot.lsbclust.R | 2 +
inst |only
man/int.lsbclust.Rd | 4 ++-
man/lov.Rd | 35 ++++++++++++++++++++----------
man/lsbclust.Rd | 21 ++++++++++++++++--
man/orc.lsbclust.Rd | 18 ++++++++++++---
man/plot.lsbclust.Rd | 4 +++
src/RcppExports.cpp | 34 +++++++++++------------------
14 files changed, 194 insertions(+), 89 deletions(-)
Title: Predicting Species Accumulation Curves
Diff between preseqR versions 1.0.1 dated 2014-09-04 and 1.1 dated 2015-03-11
Description: Estimating species accumulation curves by rational function approximations to the non-parametric empirical Bayes estimator and by the zero-truncated Negative Binomial distribution.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng
DESCRIPTION | 10 -
MD5 | 38 ++-
NAMESPACE | 3
R/continued_fraction.R | 320 +++++++++++++++-----------------
R/simulation.R |only
R/ztnb.R | 83 +++-----
README.md | 2
data/FisherButterflyHist.txt.gz |binary
man/FisherButterflyHist.Rd | 2
man/preseqR.interpolate.distinct.Rd |only
man/preseqR.nonreplace.sampling.Rd |only
man/preseqR.package.Rd | 13 +
man/preseqR.rfa.curve.Rd | 33 ---
man/preseqR.rfa.estimate.Rd | 16 -
man/preseqR.rfa.species.accum.curve.Rd | 36 ---
man/preseqR.simu.hist.Rd |only
man/preseqR.ztnb.em.Rd | 11 -
man/preseqR.ztnb.estimate.Rd | 17 -
man/preseqR.ztnb.species.accum.curve.Rd | 12 -
src/continued_fraction.cpp | 72 +++++--
src/continued_fraction.h | 9
src/continued_fraction_c_interface.cpp | 72 ++++++-
22 files changed, 386 insertions(+), 363 deletions(-)
Title: Generative Models for Complex Networks with Conditionally
Independent Dyadic Structure
Diff between CIDnetworks versions 0.6.0 dated 2014-06-18 and 0.8.0 dated 2015-03-11
Description: Generative models for complex networks with conditionally independent dyadic structure. Now supports directed arcs!
Author: Samrachana Adhikari [aut],
Beau Dabbs [cre, aut],
Brian Junker [aut],
Mauricio Sadinle [aut],
Tracy Sweet [aut],
A.C. Thomas [aut]
Maintainer: Beau Dabbs
CIDnetworks-0.6.0/CIDnetworks/src/Makevars.win |only
CIDnetworks-0.8.0/CIDnetworks/DESCRIPTION | 27
CIDnetworks-0.8.0/CIDnetworks/MD5 | 42
CIDnetworks-0.8.0/CIDnetworks/NAMESPACE | 8
CIDnetworks-0.8.0/CIDnetworks/R/BETA-SR-reference.R | 66 -
CIDnetworks-0.8.0/CIDnetworks/R/CID-basefunctions.R | 413 ++++----
CIDnetworks-0.8.0/CIDnetworks/R/CID-external.R | 491 +++++----
CIDnetworks-0.8.0/CIDnetworks/R/CID-gibbs.R | 755 +++++++++------
CIDnetworks-0.8.0/CIDnetworks/R/COV-reference.R | 160 ++-
CIDnetworks-0.8.0/CIDnetworks/R/HBM-reference.R | 115 +-
CIDnetworks-0.8.0/CIDnetworks/R/LSM-reference.R | 25
CIDnetworks-0.8.0/CIDnetworks/R/LVM-reference.R | 83 -
CIDnetworks-0.8.0/CIDnetworks/R/MMSBM-reference.R | 200 ++-
CIDnetworks-0.8.0/CIDnetworks/R/SBM-reference.R | 68 +
CIDnetworks-0.8.0/CIDnetworks/R/SRa-reference.R | 15
CIDnetworks-0.8.0/CIDnetworks/R/plotting-pieces.R | 24
CIDnetworks-0.8.0/CIDnetworks/TODO | 66 +
CIDnetworks-0.8.0/CIDnetworks/man/CID-classes.Rd | 32
CIDnetworks-0.8.0/CIDnetworks/man/CID-gibbs.Rd | 32
CIDnetworks-0.8.0/CIDnetworks/man/CID-helpers.Rd | 9
CIDnetworks-0.8.0/CIDnetworks/man/CID-master.Rd | 42
CIDnetworks-0.8.0/CIDnetworks/man/CIDnetworks-package.Rd | 6
CIDnetworks-0.8.0/CIDnetworks/tests/input-test.R |only
23 files changed, 1757 insertions(+), 922 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Diff between clusterSEs versions 1.1 dated 2015-03-05 and 1.2 dated 2015-03-11
Description: Calculate p-values and confidence intervals using cluster-adjusted t-statistics (based on Ibragimov and Muller 2010, Journal of Business and Economic Statistics 28(4)), pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics for the GLM and mlogit models (the latter two techniques based on Cameron, Gelbach, and Miller 2008, Review of Economics and Statistics 90(3)).
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey
DESCRIPTION | 8 +++---
MD5 | 14 +++++-----
R/clusterBSmlogit.R | 3 +-
R/clusterIM.R | 56 +++++++++++++++++++++----------------------
R/clusterIMmlogit.R | 60 +++++++++++++++++++++++++----------------------
man/cluster.bs.mlogit.Rd | 3 +-
man/cluster.im.Rd | 25 ++++++++-----------
man/cluster.im.mlogit.Rd | 30 ++++++++++++-----------
8 files changed, 103 insertions(+), 96 deletions(-)
Title: Soil Physical Analysis
Diff between soilphysics versions 2.0 dated 2015-01-11 and 2.1 dated 2015-03-11
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva
DESCRIPTION | 10 +++---
MD5 | 26 ++++++++++-------
NAMESPACE | 4 ++
NEWS | 25 +++++++++++++----
R/iwc.R | 18 ++++++------
R/maxcurv.R | 49 +++++++++++++++------------------
R/onload.R | 2 -
R/plotCIsigmaP.R |only
R/sigmaP.r | 66 +++++++++++++++++++++------------------------
R/simSigmaP.R |only
man/llwr.Rd | 6 ++--
man/maxcurv.Rd | 10 +-----
man/plotCIsigmaP.Rd |only
man/sigmaP.Rd | 36 +++++++++++++++---------
man/simSigmaP.Rd |only
man/soilphysics-package.Rd | 4 +-
16 files changed, 138 insertions(+), 118 deletions(-)
Title: GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Diff between multgee versions 1.5.0 dated 2014-11-02 and 1.5.1 dated 2015-03-11
Description: GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
multgee-1.5.0/multgee/man/LORgee.Rd |only
multgee-1.5.0/multgee/man/LORgee.default.Rd |only
multgee-1.5.0/multgee/man/RCconstrains.Rd |only
multgee-1.5.0/multgee/man/RRCheter.Rd |only
multgee-1.5.0/multgee/man/RRChomog.Rd |only
multgee-1.5.0/multgee/man/combns.Rd |only
multgee-1.5.0/multgee/man/datacounts.Rd |only
multgee-1.5.0/multgee/man/derivacl.Rd |only
multgee-1.5.0/multgee/man/derivbcl.Rd |only
multgee-1.5.0/multgee/man/derivmclm.Rd |only
multgee-1.5.0/multgee/man/diagmod.Rd |only
multgee-1.5.0/multgee/man/fitLORgee.Rd |only
multgee-1.5.0/multgee/man/fitmm.Rd |only
multgee-1.5.0/multgee/man/inversemat.Rd |only
multgee-1.5.0/multgee/man/ipfp.Rd |only
multgee-1.5.0/multgee/man/mmpar.Rd |only
multgee-1.5.0/multgee/man/muprob.Rd |only
multgee-1.5.0/multgee/man/normscores.Rd |only
multgee-1.5.0/multgee/man/odds.ratio.Rd |only
multgee-1.5.0/multgee/man/print.LORgee.Rd |only
multgee-1.5.0/multgee/man/print.summary.LORgee.Rd |only
multgee-1.5.0/multgee/man/print.waldts.Rd |only
multgee-1.5.0/multgee/man/summary.LORgee.Rd |only
multgee-1.5.1/multgee/DESCRIPTION | 8 +--
multgee-1.5.1/multgee/MD5 | 47 +++++-------------
multgee-1.5.1/multgee/R/intrinsic.pars.R | 3 -
multgee-1.5.1/multgee/R/nomLORgee.R | 39 +++++++--------
multgee-1.5.1/multgee/R/ordLORgee.R | 5 +
multgee-1.5.1/multgee/build |only
multgee-1.5.1/multgee/inst/CITATION | 56 ++++++++++++----------
multgee-1.5.1/multgee/inst/NEWS | 6 ++
multgee-1.5.1/multgee/inst/doc |only
multgee-1.5.1/multgee/man/multgee-package.Rd | 2
multgee-1.5.1/multgee/man/nomLORgee.Rd | 4 +
multgee-1.5.1/multgee/man/ordLORgee.Rd | 2
multgee-1.5.1/multgee/vignettes |only
36 files changed, 88 insertions(+), 84 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Diff between mixlm versions 1.0.8.3 dated 2015-02-23 and 1.0.8.5 dated 2015-03-11
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/statistics.R | 3 ++-
3 files changed, 8 insertions(+), 7 deletions(-)
Title: Distances and Routes on Geographical Grids
Diff between gdistance versions 1.1-6 dated 2015-01-07 and 1.1-7 dated 2015-03-11
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten
ChangeLog | 6 ++
DESCRIPTION | 8 +--
MD5 | 14 +++---
inst/doc/gdistance1.R | 100 ++++++++++++++++++++++++-----------------------
inst/doc/gdistance1.Rnw | 82 ++++++++++++++++++++------------------
inst/doc/gdistance1.pdf |binary
vignettes/gdistance1.Rnw | 82 ++++++++++++++++++++------------------
vignettes/gdistance1.bib | 10 ++--
8 files changed, 160 insertions(+), 142 deletions(-)
Title: Send Emails Using 'Blat' for Windows
Diff between blatr versions 1.0 dated 2015-03-10 and 1.0.1 dated 2015-03-11
Description: A wrapper around the 'Blat' command line SMTP mailer for Windows.
'Blat' is public domain software, but be sure to read the license before use.
It can be found at the Blat website http://www.blat.net.
Author: Stefan Milton Bache
Maintainer: Stefan Milton Bache
DESCRIPTION | 14 +++++++-------
MD5 | 8 ++++----
R/blatr.R | 56 ++++++++++++++++++++++++++++----------------------------
man/blat.Rd | 18 +++++++++---------
man/blatr.Rd | 32 ++++++++++++++++----------------
5 files changed, 64 insertions(+), 64 deletions(-)
Title: Baseline Correction of Spectra
Diff between baseline versions 1.1-4 dated 2015-01-20 and 1.2-0 dated 2015-03-11
Description: Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters.
Author: Kristian Hovde Liland [aut, cre],
Bjørn-Helge Mevik [aut],
Roberto Canteri [ctb]
Maintainer: Kristian Hovde Liland
DESCRIPTION | 13 +++++++------
MD5 | 23 ++++++++++++++---------
NEWS | 4 ++++
R/baseline.modpolyfit.R | 2 +-
R/baseline.shirley.R |only
R/baselineGUI.R | 4 ++++
R/optimisation.R | 15 ++++++++++++++-
data/C1s.RData |only
data/O1s.rda |only
data/datalist | 2 ++
man/XPSdata.Rd |only
man/baseline-package.Rd | 6 +++---
man/baseline.Rd | 3 ++-
man/baseline.shirley.Rd |only
man/baselineGUI.Rd | 5 ++++-
15 files changed, 55 insertions(+), 22 deletions(-)
Title: STK++ Integration to R Using Rcpp
Diff between rtkpp versions 0.8.5 dated 2015-02-20 and 0.8.6 dated 2015-03-11
Description: STK++ (http://www.stkpp.org) is a collection of
C++ classes for statistics, clustering, linear algebra, arrays (with an
Eigen-like API), regression, dimension reduction, etc. The integration of
the library to R is using Rcpp.
The rtkpp package includes the header files from the STK++
library (currently version 0.8.6). Thus users do not need to
install STK++ itself in order to use it.
STK++ is licensed under the GNU LGPL version 2 or later. rtkpp
(the stkpp integration into R) is licensed under the
GNU GPL version 2 or later.
Author: Serge Iovleff [aut, cre],
Vincent Kubicki [ctb],
Quentin Grimonprez [ctb],
Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff
rtkpp-0.8.5/rtkpp/R/ClusterAlgo.R |only
rtkpp-0.8.5/rtkpp/R/ClusterCategorical.R |only
rtkpp-0.8.5/rtkpp/R/ClusterDiagGaussian.R |only
rtkpp-0.8.5/rtkpp/R/ClusterGamma.R |only
rtkpp-0.8.5/rtkpp/R/ClusterHeterogeneous.R |only
rtkpp-0.8.5/rtkpp/R/ClusterInit.R |only
rtkpp-0.8.5/rtkpp/R/ClusterModelNames.R |only
rtkpp-0.8.5/rtkpp/R/ClusterPlot.R |only
rtkpp-0.8.5/rtkpp/R/ClusterPoisson.R |only
rtkpp-0.8.5/rtkpp/R/ClusterStrategy.R |only
rtkpp-0.8.5/rtkpp/R/IClusterModel.R |only
rtkpp-0.8.5/rtkpp/R/global.R |only
rtkpp-0.8.5/rtkpp/data |only
rtkpp-0.8.5/rtkpp/inst/projects/Arrays/include/STK_ICAllocator.h |only
rtkpp-0.8.5/rtkpp/inst/projects/Arrays/include/operators/STK_DiagOperator.h |only
rtkpp-0.8.5/rtkpp/inst/projects/Clustering/include/ExponentialMixtureModels |only
rtkpp-0.8.5/rtkpp/inst/projects/Clustering/include/GaussianMixtureModels |only
rtkpp-0.8.5/rtkpp/inst/projects/Clustering/include/MixturesBridges |only
rtkpp-0.8.5/rtkpp/man/ClusterAlgo-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterCategorical-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterDiagGaussian-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterGamma-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterHeterogeneous-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterInit-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterModels-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterPoisson-class.Rd |only
rtkpp-0.8.5/rtkpp/man/ClusterStrategy-class.Rd |only
rtkpp-0.8.5/rtkpp/man/DebTrivedi.Rd |only
rtkpp-0.8.5/rtkpp/man/HeartDisease.Rd |only
rtkpp-0.8.5/rtkpp/man/IClusterComponent-class.Rd |only
rtkpp-0.8.5/rtkpp/man/birds.Rd |only
rtkpp-0.8.5/rtkpp/man/car.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterAlgo.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterCategorical.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterCategoricalNames.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterDiagGaussian.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterDiagGaussianNames.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterGamma.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterGammaNames.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterHeterogeneous.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterInit.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterPoisson.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterPoissonNames.Rd |only
rtkpp-0.8.5/rtkpp/man/clusterStrategy.Rd |only
rtkpp-0.8.5/rtkpp/man/extract-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/geyser.Rd |only
rtkpp-0.8.5/rtkpp/man/initialize-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/missingValues-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/plot-ClusterCategorical-method.Rd |only
rtkpp-0.8.5/rtkpp/man/plot-ClusterDiagGaussian-method.Rd |only
rtkpp-0.8.5/rtkpp/man/plot-ClusterGamma-method.Rd |only
rtkpp-0.8.5/rtkpp/man/plot-ClusterHeterogeneous-method.Rd |only
rtkpp-0.8.5/rtkpp/man/plot-ClusterPoisson-method.Rd |only
rtkpp-0.8.5/rtkpp/man/print-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/show-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/summary-methods.Rd |only
rtkpp-0.8.5/rtkpp/man/titanic.Rd |only
rtkpp-0.8.5/rtkpp/src/STK_ClusterFacade.cpp |only
rtkpp-0.8.5/rtkpp/src/STK_ClusterLauncher.cpp |only
rtkpp-0.8.5/rtkpp/src/STK_RDataHandler.cpp |only
rtkpp-0.8.5/rtkpp/src/clusterMixture.cpp |only
rtkpp-0.8.5/rtkpp/tests |only
rtkpp-0.8.6/rtkpp/DESCRIPTION | 19
rtkpp-0.8.6/rtkpp/MD5 | 275 +-
rtkpp-0.8.6/rtkpp/NAMESPACE | 48
rtkpp-0.8.6/rtkpp/R/rtkpp.R | 327 ---
rtkpp-0.8.6/rtkpp/build/vignette.rds |binary
rtkpp-0.8.6/rtkpp/cleanup | 1
rtkpp-0.8.6/rtkpp/inst/doc/rtkpp-introduction.R |only
rtkpp-0.8.6/rtkpp/inst/doc/rtkpp-introduction.Rnw | 38
rtkpp-0.8.6/rtkpp/inst/doc/rtkpp-introduction.pdf |binary
rtkpp-0.8.6/rtkpp/inst/include/Arrays.h | 1
rtkpp-0.8.6/rtkpp/inst/include/Clustering.h | 8
rtkpp-0.8.6/rtkpp/inst/projects/Algebra/include/STK_lapack_SymEigen.h | 2
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array1D.h | 21
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2D.h | 44
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DDiagonal.h | 46
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DLowerTriangular.h | 44
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DNumber.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DPoint.h | 48
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DSquare.h | 45
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DUpperTriangular.h | 45
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DVector.h | 46
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2D_Functors.h | 69
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ArrayBase.h | 57
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CAllocator.h | 280 +-
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArray.h | 29
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayNumber.h | 18
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayPoint.h | 24
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArraySquare.h | 7
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayVector.h | 24
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Const_Arrays.h | 231 +-
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBase.h | 18
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBaseProduct.h | 67
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBaseVisitor.h | 4
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_IArray2DBase.h | 11
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_IArrayBase.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ITContainer.h | 307 +-
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_BinaryOperators.h | 159 -
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_DiagonalOperator.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_DotOperators.h | 20
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_SlicingOperators.h | 153 -
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_TransposeOperator.h | 33
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_UnaryOperators.h | 34
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ArrayByArrayProduct.h | 11
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ProductImpl.h | 31
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ProductOperators.h | 1043 +++-------
rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/visitors/STK_SlicingVisitors.h | 32
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBase.h | 22
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBridge.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalParameters.h | 18
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_Categorical_pjk.h | 16
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_Categorical_pk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaBase.h | 42
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaBridge.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaParameters.h | 147 +
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_a_bjk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_a_bk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_aj_bjk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_aj_bk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_b.h | 20
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bj.h | 20
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bjk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bk.h | 16
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_b.h | 22
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bj.h | 22
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bjk.h | 16
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bk.h | 14
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/KernelMixtureModels |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonBase.h | 12
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonBridge.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonParameters.h | 36
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_ljk.h | 6
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_ljlk.h | 8
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_lk.h | 6
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureBridge.h |only
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureComposer.h | 4
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureManager.h | 29
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureModel.h | 60
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureComposer.h | 18
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureData.h | 16
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureManager.h | 206 -
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureParamStat.h | 18
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_IMixtureManager.cpp | 38
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_MixtureComposer.cpp | 6
rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_MixtureFacade.cpp | 14
rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_DataFrame.h | 9
rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_IDataHandler.h | 2
rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_IVariable.h | 2
rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_Variable.h | 1
rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_DataFrame.cpp | 8
rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_IDataHandler.cpp | 2
rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_RMatrix.h | 48
rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_RVector.h | 52
rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_MultiNormal.h | 2
rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Stat_Functors.h | 4
rtkpp-0.8.6/rtkpp/inst/projects/Sdk/include/STK_Macros.h | 15
rtkpp-0.8.6/rtkpp/inst/projects/Sdk/include/STK_MetaTemplate.h | 10
rtkpp-0.8.6/rtkpp/man/rtkpp-package.Rd | 11
rtkpp-0.8.6/rtkpp/src/rtkpp.cpp |only
rtkpp-0.8.6/rtkpp/vignettes/rtkpp-introduction.Rnw | 38
162 files changed, 2367 insertions(+), 2493 deletions(-)
Title: Data Visualization for Statistics in Social Science
Diff between sjPlot versions 1.6.9 dated 2015-02-15 and 1.7 dated 2015-03-11
Description: Collection of several plotting and table output functions for
visualizing data, and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Lüdecke
sjPlot-1.6.9/sjPlot/man/sjd.chisq.Rd |only
sjPlot-1.6.9/sjPlot/man/sjd.f.Rd |only
sjPlot-1.6.9/sjPlot/man/sjd.norm.Rd |only
sjPlot-1.6.9/sjPlot/man/sjd.t.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.SPSS.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.convertToLabel.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.convertToValue.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.getValueLabels.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.getVariableLabels.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.setValueLabels.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.setVariableLabels.Rd |only
sjPlot-1.6.9/sjPlot/man/sji.viewSPSS.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.aov1.levene.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.chi2.gof.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.cramer.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.cronbach.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.etasq.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.mic.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.mwu.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.phi.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.reliability.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.se.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.stdb.Rd |only
sjPlot-1.6.9/sjPlot/man/sjs.table.values.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.adjustPlotRange.y.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.dicho.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.groupString.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.groupVar.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.groupVarLabels.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.mean.n.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.recode.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.recodeTo.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.setNA.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.strpos.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.weight.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.weight2.Rd |only
sjPlot-1.6.9/sjPlot/man/sju.wordwrap.Rd |only
sjPlot-1.7/sjPlot/DESCRIPTION | 14
sjPlot-1.7/sjPlot/MD5 | 227 -
sjPlot-1.7/sjPlot/NAMESPACE | 84
sjPlot-1.7/sjPlot/NEWS | 966 +++---
sjPlot-1.7/sjPlot/R/efc.R | 146 -
sjPlot-1.7/sjPlot/R/helpfunctions.R | 296 +-
sjPlot-1.7/sjPlot/R/sjImportSPSS.R | 956 +++++-
sjPlot-1.7/sjPlot/R/sjPlotAncovaLSMeans.R | 719 ++---
sjPlot-1.7/sjPlot/R/sjPlotAnova.R | 38
sjPlot-1.7/sjPlot/R/sjPlotClusterAnalysis.R | 26
sjPlot-1.7/sjPlot/R/sjPlotCorr.R | 36
sjPlot-1.7/sjPlot/R/sjPlotDist.R | 43
sjPlot-1.7/sjPlot/R/sjPlotFrequencies.R | 1764 ++++++------
sjPlot-1.7/sjPlot/R/sjPlotGLME.R | 3223 +++++++++++------------
sjPlot-1.7/sjPlot/R/sjPlotGroupFrequencies.R | 2507 ++++++++---------
sjPlot-1.7/sjPlot/R/sjPlotInteractions.R | 10
sjPlot-1.7/sjPlot/R/sjPlotLikert.R | 1250 ++++----
sjPlot-1.7/sjPlot/R/sjPlotLinreg.R | 1842 ++++++-------
sjPlot-1.7/sjPlot/R/sjPlotLinregMultiple.R | 14
sjPlot-1.7/sjPlot/R/sjPlotOdds.R | 33
sjPlot-1.7/sjPlot/R/sjPlotOddsMultiple.R | 846 +++---
sjPlot-1.7/sjPlot/R/sjPlotPCA.R | 24
sjPlot-1.7/sjPlot/R/sjPlotPearsonsChi2Test.R | 53
sjPlot-1.7/sjPlot/R/sjPlotPropTable.R | 28
sjPlot-1.7/sjPlot/R/sjPlotScatter.R | 47
sjPlot-1.7/sjPlot/R/sjPlotSetTheme.R | 160 +
sjPlot-1.7/sjPlot/R/sjPlotStackFrequencies.R | 22
sjPlot-1.7/sjPlot/R/sjRecode.R | 254 -
sjPlot-1.7/sjPlot/R/sjStatistics.R | 1328 ++++-----
sjPlot-1.7/sjPlot/R/sjTabCorr.R | 1062 +++----
sjPlot-1.7/sjPlot/R/sjTabDataFrame.R | 4
sjPlot-1.7/sjPlot/R/sjTabFrequencies.R | 34
sjPlot-1.7/sjPlot/R/sjTabGrpmean.R | 373 +-
sjPlot-1.7/sjPlot/R/sjTabItemAnalysis.R | 59
sjPlot-1.7/sjPlot/R/sjTabLinReg.R | 698 +++-
sjPlot-1.7/sjPlot/R/sjTabOdds.R | 541 ++-
sjPlot-1.7/sjPlot/R/sjTabPCA.R | 66
sjPlot-1.7/sjPlot/R/sjTabPropTable.R | 46
sjPlot-1.7/sjPlot/R/sjTabSPSS.R | 98
sjPlot-1.7/sjPlot/R/sjTabStackFrq.R | 13
sjPlot-1.7/sjPlot/README.md | 59
sjPlot-1.7/sjPlot/data/efc2.RData |only
sjPlot-1.7/sjPlot/data/efc3.RData |only
sjPlot-1.7/sjPlot/man/adjust_plot_range.Rd |only
sjPlot-1.7/sjPlot/man/chisq_gof.Rd |only
sjPlot-1.7/sjPlot/man/cramer.Rd |only
sjPlot-1.7/sjPlot/man/cronb.Rd |only
sjPlot-1.7/sjPlot/man/dicho.Rd |only
sjPlot-1.7/sjPlot/man/dist_chisq.Rd |only
sjPlot-1.7/sjPlot/man/dist_f.Rd |only
sjPlot-1.7/sjPlot/man/dist_norm.Rd |only
sjPlot-1.7/sjPlot/man/dist_t.Rd |only
sjPlot-1.7/sjPlot/man/efc.Rd | 99
sjPlot-1.7/sjPlot/man/efc2.Rd |only
sjPlot-1.7/sjPlot/man/efc3.Rd |only
sjPlot-1.7/sjPlot/man/eta_sq.Rd |only
sjPlot-1.7/sjPlot/man/get_val_labels.Rd |only
sjPlot-1.7/sjPlot/man/get_var_labels.Rd |only
sjPlot-1.7/sjPlot/man/group_labels.Rd |only
sjPlot-1.7/sjPlot/man/group_str.Rd |only
sjPlot-1.7/sjPlot/man/group_var.Rd |only
sjPlot-1.7/sjPlot/man/levene_test.Rd |only
sjPlot-1.7/sjPlot/man/mean_n.Rd |only
sjPlot-1.7/sjPlot/man/mic.Rd |only
sjPlot-1.7/sjPlot/man/mwu.Rd |only
sjPlot-1.7/sjPlot/man/phi.Rd |only
sjPlot-1.7/sjPlot/man/read_sas.Rd |only
sjPlot-1.7/sjPlot/man/read_spss.Rd |only
sjPlot-1.7/sjPlot/man/read_stata.Rd |only
sjPlot-1.7/sjPlot/man/recode_to.Rd |only
sjPlot-1.7/sjPlot/man/reliab_test.Rd |only
sjPlot-1.7/sjPlot/man/set_na.Rd |only
sjPlot-1.7/sjPlot/man/set_val_labels.Rd |only
sjPlot-1.7/sjPlot/man/set_var_labels.Rd |only
sjPlot-1.7/sjPlot/man/sjPlot-package.Rd | 46
sjPlot-1.7/sjPlot/man/sjc.qclus.Rd | 6
sjPlot-1.7/sjPlot/man/sjp.aov1.Rd | 18
sjPlot-1.7/sjPlot/man/sjp.chi2.Rd | 16
sjPlot-1.7/sjPlot/man/sjp.corr.Rd | 6
sjPlot-1.7/sjPlot/man/sjp.emm.int.Rd | 2
sjPlot-1.7/sjPlot/man/sjp.frq.Rd | 34
sjPlot-1.7/sjPlot/man/sjp.glm.Rd | 8
sjPlot-1.7/sjPlot/man/sjp.glmer.Rd | 6
sjPlot-1.7/sjPlot/man/sjp.glmm.Rd | 6
sjPlot-1.7/sjPlot/man/sjp.grpfrq.Rd | 29
sjPlot-1.7/sjPlot/man/sjp.int.Rd | 4
sjPlot-1.7/sjPlot/man/sjp.likert.Rd | 5
sjPlot-1.7/sjPlot/man/sjp.lm.Rd | 12
sjPlot-1.7/sjPlot/man/sjp.lmer.Rd | 2
sjPlot-1.7/sjPlot/man/sjp.lmm.Rd | 6
sjPlot-1.7/sjPlot/man/sjp.pca.Rd | 8
sjPlot-1.7/sjPlot/man/sjp.scatter.Rd | 33
sjPlot-1.7/sjPlot/man/sjp.setTheme.Rd | 499 +--
sjPlot-1.7/sjPlot/man/sjp.stackfrq.Rd | 11
sjPlot-1.7/sjPlot/man/sjp.xtab.Rd | 15
sjPlot-1.7/sjPlot/man/sjt.corr.Rd | 46
sjPlot-1.7/sjPlot/man/sjt.df.Rd | 4
sjPlot-1.7/sjPlot/man/sjt.frq.Rd | 12
sjPlot-1.7/sjPlot/man/sjt.glm.Rd | 161 -
sjPlot-1.7/sjPlot/man/sjt.grpmean.Rd | 2
sjPlot-1.7/sjPlot/man/sjt.itemanalysis.Rd | 26
sjPlot-1.7/sjPlot/man/sjt.lm.Rd | 180 +
sjPlot-1.7/sjPlot/man/sjt.pca.Rd | 60
sjPlot-1.7/sjPlot/man/sjt.stackfrq.Rd | 9
sjPlot-1.7/sjPlot/man/sjt.xtab.Rd | 12
sjPlot-1.7/sjPlot/man/std_beta.Rd |only
sjPlot-1.7/sjPlot/man/std_e.Rd |only
sjPlot-1.7/sjPlot/man/str_pos.Rd |only
sjPlot-1.7/sjPlot/man/table_values.Rd |only
sjPlot-1.7/sjPlot/man/to_fac.Rd |only
sjPlot-1.7/sjPlot/man/to_label.Rd |only
sjPlot-1.7/sjPlot/man/to_sjPlot.Rd |only
sjPlot-1.7/sjPlot/man/to_value.Rd |only
sjPlot-1.7/sjPlot/man/view_spss.Rd |only
sjPlot-1.7/sjPlot/man/weight.Rd |only
sjPlot-1.7/sjPlot/man/weight2.Rd |only
sjPlot-1.7/sjPlot/man/word_wrap.Rd |only
sjPlot-1.7/sjPlot/man/write_spss.Rd |only
sjPlot-1.7/sjPlot/man/write_stata.Rd |only
156 files changed, 11693 insertions(+), 9699 deletions(-)
Title: Fitting Structural Equation Mixture Models
Diff between nlsem versions 0.2 dated 2015-02-10 and 0.3 dated 2015-03-11
Description: Estimation of structural equation models with nonlinear effects
and underlying nonnormal distributions.
Author: Nora Umbach [aut, cre],
Katharina Naumann [aut],
David Hoppe [aut],
Holger Brandt [aut],
Augustin Kelava [ctb],
Bernhard Schmitz [ctb]
Maintainer: Nora Umbach
ChangeLog |only
DESCRIPTION | 8 +--
MD5 | 37 ++++++++-------
NAMESPACE | 13 ++++-
R/em.R | 72 +++++++++++++++++------------
R/lms.R | 18 ++++---
R/model.R | 34 ++++++-------
R/nsemm.R | 38 +++++++++------
R/qml.R |only
R/s3generics.R | 106 ++++++++++++++++++++++++++++++++-----------
R/semm.R | 2
data |only
man/as.data.frame.Rd | 8 +--
man/count_free_parameters.Rd | 4 -
man/create_sem.Rd | 4 -
man/em.Rd | 20 +++++---
man/fill_model.Rd | 2
man/jordan.Rd |only
man/nlsem-package.Rd | 6 +-
man/qml.Rd |only
man/simulate.Rd | 8 +--
man/specify_sem.Rd | 8 +--
22 files changed, 245 insertions(+), 143 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 2.1-1629 dated 2015-03-05 and 2.1-1640 dated 2015-03-11
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
lfe-2.1-1629/lfe/NEWS |only
lfe-2.1-1640/lfe/DESCRIPTION | 10 +-
lfe-2.1-1640/lfe/MD5 | 46 +++++-----
lfe-2.1-1640/lfe/R/btrap.R | 3
lfe-2.1-1640/lfe/R/cgsolve.R | 14 +--
lfe-2.1-1640/lfe/R/demeanlist.R | 27 ------
lfe-2.1-1640/lfe/R/felm.R | 12 +-
lfe-2.1-1640/lfe/R/kaczmarz.R | 26 +-----
lfe-2.1-1640/lfe/R/oldfelm.R | 3
lfe-2.1-1640/lfe/R/startup.R | 41 +++++----
lfe-2.1-1640/lfe/cleanup | 3
lfe-2.1-1640/lfe/configure | 20 ++--
lfe-2.1-1640/lfe/configure.ac | 2
lfe-2.1-1640/lfe/inst/NEWS.Rd |only
lfe-2.1-1640/lfe/inst/doc/CHANGELOG | 4
lfe-2.1-1640/lfe/inst/doc/identification.pdf |binary
lfe-2.1-1640/lfe/inst/doc/lfehow.pdf |binary
lfe-2.1-1640/lfe/inst/doc/speed.pdf |binary
lfe-2.1-1640/lfe/man/lfe-package.Rd | 4
lfe-2.1-1640/lfe/src/demean.c | 116 +++++++++------------------
lfe-2.1-1640/lfe/src/lfe.c | 13 +--
lfe-2.1-1640/lfe/src/lfe.h | 6 -
lfe-2.1-1640/lfe/src/utils.c | 32 ++++---
lfe-2.1-1640/lfe/tests/ivtest.R | 1
lfe-2.1-1640/lfe/tests/ivtest.Rout.save | 7 +
25 files changed, 170 insertions(+), 220 deletions(-)
Title: Generalized Multistate Simulation Model
Diff between gems versions 0.9.5 dated 2014-05-27 and 1.0.0 dated 2015-03-11
Description: Simulate and analyze multistate models with general hazard functions. gems provides functionality for the preparation of hazard functions and parameters, simulation from a general multistate model and predicting future events. The multistate model is not required to be a Markov model and may take the history of previous events into account. In the basic version, it allows to simulate from transition-specific hazard function, whose parameters are multivariable normally distributed.
Author: Luisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer
Maintainer: Luisa Salazar Vizcaya
gems-0.9.5/gems/man/ArtCohort-class.Rd |only
gems-0.9.5/gems/man/PosteriorProbabilities-class.Rd |only
gems-0.9.5/gems/man/transition.structure-class.Rd |only
gems-1.0.0/gems/ChangeLog | 15
gems-1.0.0/gems/DESCRIPTION | 18
gems-1.0.0/gems/MD5 | 54 +
gems-1.0.0/gems/NAMESPACE | 90 --
gems-1.0.0/gems/R/gems-package.R |only
gems-1.0.0/gems/R/gems.r | 453 +++++++++++++--
gems-1.0.0/gems/build |only
gems-1.0.0/gems/inst |only
gems-1.0.0/gems/man/ArtCohort.Rd |only
gems-1.0.0/gems/man/PosteriorProbabilities.Rd |only
gems-1.0.0/gems/man/cumulativeIncidence.Rd | 61 --
gems-1.0.0/gems/man/gems.Rd |only
gems-1.0.0/gems/man/generateHazardMatrix.Rd | 40 -
gems-1.0.0/gems/man/generateParameterCovarianceMatrix.Rd | 45 -
gems-1.0.0/gems/man/generateParameterMatrix.Rd | 43 -
gems-1.0.0/gems/man/simulateCohort.Rd | 178 +++--
gems-1.0.0/gems/man/tavi.Rd | 50 +
gems-1.0.0/gems/man/transition.structure.Rd |only
gems-1.0.0/gems/man/transitionProbabilities.Rd | 60 -
gems-1.0.0/gems/vignettes |only
23 files changed, 766 insertions(+), 341 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Diff between dbmss versions 2.1.2 dated 2014-11-01 and 2.2.0 dated 2015-03-11
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on spatstat for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon
dbmss-2.1.2/dbmss/R/FillEnveloppe.R |only
dbmss-2.1.2/dbmss/man/FillEnveloppe.Rd |only
dbmss-2.2.0/dbmss/DESCRIPTION | 12 --
dbmss-2.2.0/dbmss/MD5 | 86 ++++++++--------
dbmss-2.2.0/dbmss/NAMESPACE | 8 +
dbmss-2.2.0/dbmss/NEWS | 17 +++
dbmss-2.2.0/dbmss/R/CheckdbmssArguments.R | 24 ++++
dbmss-2.2.0/dbmss/R/DEnvelope.R | 2
dbmss-2.2.0/dbmss/R/Dhat.R | 16 ++-
dbmss-2.2.0/dbmss/R/FillEnvelope.R |only
dbmss-2.2.0/dbmss/R/KEnvelope.R | 2
dbmss-2.2.0/dbmss/R/KdEnvelope.R | 10 +
dbmss-2.2.0/dbmss/R/Kdhat.R | 64 +++++++-----
dbmss-2.2.0/dbmss/R/KinhomEnvelope.R | 2
dbmss-2.2.0/dbmss/R/KmmEnvelope.R | 2
dbmss-2.2.0/dbmss/R/MEnvelope.R | 2
dbmss-2.2.0/dbmss/R/gEnvelope.R | 2
dbmss-2.2.0/dbmss/R/m_Envelope.R | 16 +--
dbmss-2.2.0/dbmss/R/m_hat.R | 110 ++++++++++++++++-----
dbmss-2.2.0/dbmss/build/vignette.rds |binary
dbmss-2.2.0/dbmss/inst/CITATION |only
dbmss-2.2.0/dbmss/inst/doc/dbmss.R | 128 ++++++++++++++++---------
dbmss-2.2.0/dbmss/inst/doc/dbmss.Rnw | 66 ++++++------
dbmss-2.2.0/dbmss/inst/doc/dbmss.pdf |binary
dbmss-2.2.0/dbmss/man/DEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/Dhat.Rd | 4
dbmss-2.2.0/dbmss/man/FillEnvelope.Rd |only
dbmss-2.2.0/dbmss/man/GlobalEnvelope.Rd | 2
dbmss-2.2.0/dbmss/man/KEnvelope.Rd | 6 -
dbmss-2.2.0/dbmss/man/KdEnvelope.Rd | 14 ++
dbmss-2.2.0/dbmss/man/Kdhat.Rd | 17 ++-
dbmss-2.2.0/dbmss/man/KinhomEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/KmmEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/LEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/LmmEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/MEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/dbmss-package.Rd | 10 -
dbmss-2.2.0/dbmss/man/gEnvelope.Rd | 4
dbmss-2.2.0/dbmss/man/m_Envelope.Rd | 30 ++++-
dbmss-2.2.0/dbmss/man/m_hat.Rd | 31 ++++--
dbmss-2.2.0/dbmss/man/print.dbmssEnvelope.Rd | 2
dbmss-2.2.0/dbmss/man/rRandomLabelingM.Rd | 4
dbmss-2.2.0/dbmss/man/summary.dbmssEnvelope.Rd | 2
dbmss-2.2.0/dbmss/src/RcppExports.cpp | 80 +++++++--------
dbmss-2.2.0/dbmss/vignettes/KdFig.pdf |only
dbmss-2.2.0/dbmss/vignettes/dbmss.Rnw | 66 ++++++------
dbmss-2.2.0/dbmss/vignettes/dbmss.bib | 23 ++--
47 files changed, 560 insertions(+), 328 deletions(-)
Title: Generalized Boosted Regression Models
Diff between gbm versions 2.1 dated 2013-05-10 and 2.1.1 dated 2015-03-11
Description: An implementation of extensions to Freund and
Schapire's AdaBoost algorithm and Friedman's gradient boosting
machine. Includes regression methods for least squares,
absolute loss, t-distribution loss, quantile regression,
logistic, multinomial logistic, Poisson, Cox proportional
hazards partial likelihood, AdaBoost exponential loss,
Huberized hinge loss, and Learning to Rank measures
(LambdaMart).
Author: Greg Ridgeway
Maintainer: Harry Southworth
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 7 +++++++
R/test.gbm.R | 23 +++++++++--------------
4 files changed, 24 insertions(+), 22 deletions(-)
Title: Dataframe Summaries, Frequency Tables and Numerical Summaries
with Customizable Output
Diff between summarytools versions 0.2 dated 2014-11-25 and 0.3 dated 2015-03-11
Description: Generates formatted summary tables for vectors and dataframes.
Three summarizing functions: 1) 'freq' generates frequency tables
reporting counts and proportions (including cumulative); 2) 'descr'
gives common central tendency statistics and measures of dispersion
for numerical data; 3) 'dfSummary' which attempts to give as much
information as possible about a dataframe and its components in a clear,
legible table. All three functions can either display plain text tables
in the console or write markdown, text or html files to disk. An
additional misc function, 'what.is', extends base 'is' function,
checking the object against all 'is' functions.
Author: Dominic Comtois
Maintainer: Dominic Comtois
summarytools-0.2/summarytools/R/summarytools.R |only
summarytools-0.3/summarytools/DESCRIPTION | 30 ++++---
summarytools-0.3/summarytools/MD5 | 27 +++++-
summarytools-0.3/summarytools/NAMESPACE | 18 ++++
summarytools-0.3/summarytools/NEWS | 17 ++++
summarytools-0.3/summarytools/R/descr.R |only
summarytools-0.3/summarytools/R/dfSummary.R |only
summarytools-0.3/summarytools/R/freq.R |only
summarytools-0.3/summarytools/R/misc.R |only
summarytools-0.3/summarytools/R/print.summarytools.R |only
summarytools-0.3/summarytools/R/what.is.R |only
summarytools-0.3/summarytools/inst |only
summarytools-0.3/summarytools/man/desc.Rd | 62 +++++++---------
summarytools-0.3/summarytools/man/dfSummary.Rd | 32 ++++----
summarytools-0.3/summarytools/man/freq.Rd | 59 +++++++--------
summarytools-0.3/summarytools/man/print.summarytools.Rd |only
summarytools-0.3/summarytools/man/view.Rd |only
summarytools-0.3/summarytools/man/what.is.Rd |only
18 files changed, 145 insertions(+), 100 deletions(-)
Title: Using Fonts More Easily in R Graphs
Diff between showtext versions 0.2 dated 2014-01-01 and 0.3 dated 2015-03-11
Description: Making it easy to use various types of fonts
(TrueType, OpenType, Type 1, web fonts, etc.) in R graphs, and
supporting most output formats of R graphics including PNG, PDF and
SVG. Fonts will be embedded in the graph file, hence after the plot
has been created, it no longer relies on the font files.
No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu
showtext-0.2/showtext/NEWS |only
showtext-0.2/showtext/inst/fonts |only
showtext-0.3/showtext/DESCRIPTION | 27 ++---
showtext-0.3/showtext/MD5 | 43 ++++-----
showtext-0.3/showtext/NAMESPACE | 7 -
showtext-0.3/showtext/R/font.R | 22 +---
showtext-0.3/showtext/R/showtext.R | 33 +++---
showtext-0.3/showtext/R/zzz.R | 33 ++++--
showtext-0.3/showtext/README.md | 133 +++++++++++-----------------
showtext-0.3/showtext/configure | 18 +--
showtext-0.3/showtext/configure.ac | 2
showtext-0.3/showtext/inst/AUTHORS | 4
showtext-0.3/showtext/inst/COPYRIGHTS | 13 --
showtext-0.3/showtext/inst/NEWS.Rd |only
showtext-0.3/showtext/man/showtext.begin.Rd | 95 ++++++++++----------
showtext-0.3/showtext/man/showtext.end.Rd | 15 +--
showtext-0.3/showtext/src/devfuns.c | 2
showtext-0.3/showtext/src/outline.c | 11 +-
showtext-0.3/showtext/src/outline.h | 3
showtext-0.3/showtext/src/showtext-win.def | 10 +-
showtext-0.3/showtext/src/showtext.c | 57 ++++++++----
showtext-0.3/showtext/src/util.c | 21 ++--
showtext-0.3/showtext/src/util.h | 4
23 files changed, 262 insertions(+), 291 deletions(-)
Title: Nested Association Mapping Analysis
Diff between NAM versions 1.0.2.2 dated 2015-02-03 and 1.1 dated 2015-03-11
Description: Designed for association studies in nested association mapping (NAM) panels, but also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier
NAM-1.0.2.2/NAM/R/blup.R |only
NAM-1.0.2.2/NAM/data/datalist |only
NAM-1.0.2.2/NAM/man/blup.Rd |only
NAM-1.1/NAM/DESCRIPTION | 12 +++----
NAM-1.1/NAM/MD5 | 38 ++++++++++++-----------
NAM-1.1/NAM/R/MCreml.R | 13 +++-----
NAM-1.1/NAM/R/RcppExports.R | 58 +++++++++++++++++++----------------
NAM-1.1/NAM/R/gibbs.R |only
NAM-1.1/NAM/R/gwas.R | 14 ++++----
NAM-1.1/NAM/R/gwas2.R | 16 ++++++---
NAM-1.1/NAM/R/manhattan.R | 25 ++++++++++++---
NAM-1.1/NAM/R/reference.R | 52 ++++++++++++++++----------------
NAM-1.1/NAM/R/reml.R | 2 -
NAM-1.1/NAM/R/snpH2.R |only
NAM-1.1/NAM/R/snpQC.R | 2 -
NAM-1.1/NAM/man/Internals.Rd | 4 +-
NAM-1.1/NAM/man/NAM-package.Rd | 65 ++++++++++++++++++++--------------------
NAM-1.1/NAM/man/gibbs.Rd |only
NAM-1.1/NAM/man/gwas.Rd | 6 +--
NAM-1.1/NAM/man/manhattan.Rd | 5 ++-
NAM-1.1/NAM/man/reml.Rd | 4 +-
NAM-1.1/NAM/man/snpH2.Rd |only
NAM-1.1/NAM/src/RcppExports.cpp | 16 +++++++++
NAM-1.1/NAM/src/SAMP.cpp |only
24 files changed, 190 insertions(+), 142 deletions(-)
Title: Multigroup Data Analysis
Diff between multigroup versions 0.4.3 dated 2015-01-04 and 0.4.4 dated 2015-03-11
Description: Several functions are presented in order to study data in a group structure,
where the same set of variables are measured on different groups of
individuals.
Author: Aida Eslami, El Mostafa Qannari, Stephanie Bougeard, Gaston Sanchez
Questions and comments go to Aida Eslami
Maintainer: Aida Eslami
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
R/mgPLS.R | 37 +++++++++++++++++++++++++++++++++++--
man/mgPLS.Rd | 6 +++++-
4 files changed, 49 insertions(+), 12 deletions(-)
Title: Spatial Interpolation by Inverse Path Distance Weighting
Diff between ipdw versions 0.2-1 dated 2014-06-16 and 0.2-2 dated 2015-03-11
Description: Functions are provided to interpolate georeferenced point data via Inverse Path Distance Weighting. Useful for coastal marine applications where barriers in the landscape preclude interpolation with Euclidean distances.
Author: Joseph Stachelek
Maintainer: Joseph Stachelek
DESCRIPTION | 14 +++++++-------
MD5 | 37 ++++++++++++++++++++-----------------
NAMESPACE | 3 ++-
R/costrasterGen.R | 24 ++++++++++++++++++++----
R/errorGen.R | 7 ++++---
R/ipdw.R | 21 ++++++++++++++++-----
R/ipdwInterp.R | 4 +++-
R/pathdistGen.R | 5 ++---
R/pathdistGen_parallel.R |only
TODO |only
build/vignette.rds |binary
inst/CITATION |only
inst/doc/ipdw.R | 1 +
inst/doc/ipdw.Rnw | 4 +++-
inst/doc/ipdw.pdf |binary
man/costrasterGen.Rd | 29 +++++++++++++++++++++++------
man/errorGen.Rd | 3 ++-
man/ipdw.Rd | 17 ++++++++++++++---
man/ipdwInterp.Rd | 3 ++-
man/pathdistGen.Rd | 8 +++-----
vignettes/ipdw.Rnw | 4 +++-
21 files changed, 125 insertions(+), 59 deletions(-)