Wed, 11 Mar 2015

Package lsbclust updated to version 1.0.2 with previous version 1.0.1 dated 2015-02-16

Title: Least-Squares Bilinear Clustering for Three-Way Data
Description: Functions for performing least-squares bilinear clustering of three-way data. The method uses the bilinear decomposition (or biadditive model) to model two-way matrix slices while clustering over the third way. Up to four different types of clusters are included, one for each term of the bilinear decomposition. In this way, matrices are clustered simultaneously on (a subset of) their overall means, row margins, column margins and row-column interactions. The orthogonality of the bilinear model results in separability of the joint clustering problem into four separate ones. Three of these subproblems are specific k-means problems, while a special algorithm is implemented for the interactions. Plotting methods are provided, including biplots for the low-rank approximations of the interactions.
Author: Pieter Schoonees [aut, cre], Patrick Groenen [ctb]
Maintainer: Pieter Schoonees

Diff between lsbclust versions 1.0.1 dated 2015-02-16 and 1.0.2 dated 2015-03-11

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Package preseqR updated to version 1.1 with previous version 1.0.1 dated 2014-09-04

Title: Predicting Species Accumulation Curves
Description: Estimating species accumulation curves by rational function approximations to the non-parametric empirical Bayes estimator and by the zero-truncated Negative Binomial distribution.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng

Diff between preseqR versions 1.0.1 dated 2014-09-04 and 1.1 dated 2015-03-11

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New package NORRRM with initial version 1.0.0
Package: NORRRM
Type: Package
Title: Geochemical Toolkit for R
Version: 1.0.0
Date: 2015-01-29
Author: Renee Gonzalez Guzman
Maintainer: Renee Gonzalez Guzman
Imports: ggplot2,SDMTools
Description: CIPW Norm (acronym from the surnames of the authors: Cross, Iddings, Pirrson and Washington) is the most commonly used calculation algorithm to estimate the standard mineral assemblages for igneous rocks from its geochemical composition. NORRRM (acronym from noRm, R language and Renee) is the highly consistent program to calculate the CIPW Norm.
Depends: R (>= 3.1.1)
License: GPL (>= 3)
Packaged: 2015-03-11 03:18:51 UTC; linus
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-11 21:49:49

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Package CIDnetworks updated to version 0.8.0 with previous version 0.6.0 dated 2014-06-18

Title: Generative Models for Complex Networks with Conditionally Independent Dyadic Structure
Description: Generative models for complex networks with conditionally independent dyadic structure. Now supports directed arcs!
Author: Samrachana Adhikari [aut], Beau Dabbs [cre, aut], Brian Junker [aut], Mauricio Sadinle [aut], Tracy Sweet [aut], A.C. Thomas [aut]
Maintainer: Beau Dabbs

Diff between CIDnetworks versions 0.6.0 dated 2014-06-18 and 0.8.0 dated 2015-03-11

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Package clusterSEs updated to version 1.2 with previous version 1.1 dated 2015-03-05

Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted t-statistics (based on Ibragimov and Muller 2010, Journal of Business and Economic Statistics 28(4)), pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics for the GLM and mlogit models (the latter two techniques based on Cameron, Gelbach, and Miller 2008, Review of Economics and Statistics 90(3)).
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey

Diff between clusterSEs versions 1.1 dated 2015-03-05 and 1.2 dated 2015-03-11

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New package texmexseq with initial version 0.1
Package: texmexseq
Type: Package
Title: Treatment Effect eXplorer for Microbial Ecology eXperiments (using Sequence Counts)
Version: 0.1
Date: 2015-03-11
Author: Scott Olesen
Maintainer: Scott Olesen
Description: Analysis and visualization of community dynamics in microbial ecology experiments (that use sequence count data) using the truncated Poisson lognormal distribution.
License: GPL-3
URL: http://almlab.mit.edu/texmex.html
NeedsCompilation: yes
Packaged: 2015-03-11 16:21:01 UTC; scott
Repository: CRAN
Date/Publication: 2015-03-11 17:59:11

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Package soilphysics updated to version 2.1 with previous version 2.0 dated 2015-01-11

Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva

Diff between soilphysics versions 2.0 dated 2015-01-11 and 2.1 dated 2015-03-11

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New package seismicRoll with initial version 1.0.1
Type: Package
Package: seismicRoll
Version: 1.0.1
Title: Fast Rolling Functions for Seismology using Rcpp
Authors@R: c( person("Jonathan", "Callahan", email="jonathan.s.callahan@gmail.com", role=c("aut","cre")), person("Rob", "Casey", email="rob@iris.washington.edu", role=c("aut")), person("Mary", "Templeton", email="met@iris.washington.edu", role=c("aut")) )
Author: Jonathan Callahan [aut, cre], Rob Casey [aut], Mary Templeton [aut]
Maintainer: Jonathan Callahan
Depends: R (>= 2.14.1), Rcpp (>= 0.10.4)
Suggests: microbenchmark
LinkingTo: Rcpp
Description: Fast versions of seismic analysis functions that 'roll' over a vector of values. See the RcppRoll package for alternative versions of basic statistical functions such as rolling mean, median, etc.
Collate: seismicRoll.R RcppExports.R findOutliers.R roll_hampel.R roll_mean.R roll_median.R roll_sd.R roll_stalta.R
License: GPL-2
Repository: CRAN
Packaged: 2015-03-11 15:44:41 UTC; jonathan
NeedsCompilation: yes
Date/Publication: 2015-03-11 17:59:03

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Package multgee updated to version 1.5.1 with previous version 1.5.0 dated 2014-11-02

Title: GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
Description: GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis

Diff between multgee versions 1.5.0 dated 2014-11-02 and 1.5.1 dated 2015-03-11

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Package mixlm updated to version 1.0.8.5 with previous version 1.0.8.3 dated 2015-02-23

Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Author: Kristian Hovde Liland [aut, cre], Solve Sæbø [ctb], R-Core [ctb]
Maintainer: Kristian Hovde Liland

Diff between mixlm versions 1.0.8.3 dated 2015-02-23 and 1.0.8.5 dated 2015-03-11

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Package gdistance updated to version 1.1-7 with previous version 1.1-6 dated 2015-01-07

Title: Distances and Routes on Geographical Grids
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten

Diff between gdistance versions 1.1-6 dated 2015-01-07 and 1.1-7 dated 2015-03-11

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Package blatr updated to version 1.0.1 with previous version 1.0 dated 2015-03-10

Title: Send Emails Using 'Blat' for Windows
Description: A wrapper around the 'Blat' command line SMTP mailer for Windows. 'Blat' is public domain software, but be sure to read the license before use. It can be found at the Blat website http://www.blat.net.
Author: Stefan Milton Bache
Maintainer: Stefan Milton Bache

Diff between blatr versions 1.0 dated 2015-03-10 and 1.0.1 dated 2015-03-11

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Package baseline updated to version 1.2-0 with previous version 1.1-4 dated 2015-01-20

Title: Baseline Correction of Spectra
Description: Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters.
Author: Kristian Hovde Liland [aut, cre], Bjørn-Helge Mevik [aut], Roberto Canteri [ctb]
Maintainer: Kristian Hovde Liland

Diff between baseline versions 1.1-4 dated 2015-01-20 and 1.2-0 dated 2015-03-11

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Package rtkpp updated to version 0.8.6 with previous version 0.8.5 dated 2015-02-20

Title: STK++ Integration to R Using Rcpp
Description: STK++ (http://www.stkpp.org) is a collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. The integration of the library to R is using Rcpp. The rtkpp package includes the header files from the STK++ library (currently version 0.8.6). Thus users do not need to install STK++ itself in order to use it. STK++ is licensed under the GNU LGPL version 2 or later. rtkpp (the stkpp integration into R) is licensed under the GNU GPL version 2 or later.
Author: Serge Iovleff [aut, cre], Vincent Kubicki [ctb], Quentin Grimonprez [ctb], Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff

Diff between rtkpp versions 0.8.5 dated 2015-02-20 and 0.8.6 dated 2015-03-11

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 rtkpp-0.8.5/rtkpp/R/global.R                                                                            |only
 rtkpp-0.8.5/rtkpp/data                                                                                  |only
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 rtkpp-0.8.5/rtkpp/man/birds.Rd                                                                          |only
 rtkpp-0.8.5/rtkpp/man/car.Rd                                                                            |only
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 rtkpp-0.8.5/rtkpp/man/geyser.Rd                                                                         |only
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 rtkpp-0.8.5/rtkpp/tests                                                                                 |only
 rtkpp-0.8.6/rtkpp/DESCRIPTION                                                                           |   19 
 rtkpp-0.8.6/rtkpp/MD5                                                                                   |  275 +-
 rtkpp-0.8.6/rtkpp/NAMESPACE                                                                             |   48 
 rtkpp-0.8.6/rtkpp/R/rtkpp.R                                                                             |  327 ---
 rtkpp-0.8.6/rtkpp/build/vignette.rds                                                                    |binary
 rtkpp-0.8.6/rtkpp/cleanup                                                                               |    1 
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 rtkpp-0.8.6/rtkpp/inst/doc/rtkpp-introduction.pdf                                                       |binary
 rtkpp-0.8.6/rtkpp/inst/include/Arrays.h                                                                 |    1 
 rtkpp-0.8.6/rtkpp/inst/include/Clustering.h                                                             |    8 
 rtkpp-0.8.6/rtkpp/inst/projects/Algebra/include/STK_lapack_SymEigen.h                                   |    2 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array1D.h                                            |   21 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2D.h                                            |   44 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DDiagonal.h                                    |   46 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DLowerTriangular.h                             |   44 
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 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DPoint.h                                       |   48 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DSquare.h                                      |   45 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DUpperTriangular.h                             |   45 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2DVector.h                                      |   46 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Array2D_Functors.h                                   |   69 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ArrayBase.h                                          |   57 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CAllocator.h                                         |  280 +-
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArray.h                                             |   29 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayNumber.h                                       |   18 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayPoint.h                                        |   24 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArraySquare.h                                       |    7 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_CArrayVector.h                                       |   24 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_Const_Arrays.h                                       |  231 +-
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBase.h                                           |   18 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBaseProduct.h                                    |   67 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ExprBaseVisitor.h                                    |    4 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_IArray2DBase.h                                       |   11 
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 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_ITContainer.h                                        |  307 +-
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_BinaryOperators.h                          |  159 -
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 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_DotOperators.h                             |   20 
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 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_TransposeOperator.h                        |   33 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/operators/STK_UnaryOperators.h                           |   34 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ArrayByArrayProduct.h                       |   11 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ProductImpl.h                               |   31 
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ProductOperators.h                          | 1043 +++-------
 rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/visitors/STK_SlicingVisitors.h                           |   32 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBase.h       |   22 
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 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_ljlk.h              |    8 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_lk.h                |    6 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureBridge.h                                 |only
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureComposer.h                               |    4 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureManager.h                                |   29 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_IMixtureModel.h                                  |   60 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureComposer.h                                |   18 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureData.h                                    |   16 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureManager.h                                 |  206 -
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/STK_MixtureParamStat.h                               |   18 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_IMixtureManager.cpp                                  |   38 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_MixtureComposer.cpp                                  |    6 
 rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_MixtureFacade.cpp                                    |   14 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_DataFrame.h                                        |    9 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_IDataHandler.h                                     |    2 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_IVariable.h                                        |    2 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/include/STK_Variable.h                                         |    1 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_DataFrame.cpp                                          |    8 
 rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_IDataHandler.cpp                                       |    2 
 rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_RMatrix.h                                             |   48 
 rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_RVector.h                                             |   52 
 rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_MultiNormal.h                                 |    2 
 rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Stat_Functors.h                                   |    4 
 rtkpp-0.8.6/rtkpp/inst/projects/Sdk/include/STK_Macros.h                                                |   15 
 rtkpp-0.8.6/rtkpp/inst/projects/Sdk/include/STK_MetaTemplate.h                                          |   10 
 rtkpp-0.8.6/rtkpp/man/rtkpp-package.Rd                                                                  |   11 
 rtkpp-0.8.6/rtkpp/src/rtkpp.cpp                                                                         |only
 rtkpp-0.8.6/rtkpp/vignettes/rtkpp-introduction.Rnw                                                      |   38 
 162 files changed, 2367 insertions(+), 2493 deletions(-)

More information about rtkpp at CRAN
Permanent link

Package sjPlot updated to version 1.7 with previous version 1.6.9 dated 2015-02-15

Title: Data Visualization for Statistics in Social Science
Description: Collection of several plotting and table output functions for visualizing data, and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Lüdecke

Diff between sjPlot versions 1.6.9 dated 2015-02-15 and 1.7 dated 2015-03-11

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 sjPlot-1.7/sjPlot/R/efc.R                        |  146 -
 sjPlot-1.7/sjPlot/R/helpfunctions.R              |  296 +-
 sjPlot-1.7/sjPlot/R/sjImportSPSS.R               |  956 +++++-
 sjPlot-1.7/sjPlot/R/sjPlotAncovaLSMeans.R        |  719 ++---
 sjPlot-1.7/sjPlot/R/sjPlotAnova.R                |   38 
 sjPlot-1.7/sjPlot/R/sjPlotClusterAnalysis.R      |   26 
 sjPlot-1.7/sjPlot/R/sjPlotCorr.R                 |   36 
 sjPlot-1.7/sjPlot/R/sjPlotDist.R                 |   43 
 sjPlot-1.7/sjPlot/R/sjPlotFrequencies.R          | 1764 ++++++------
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 sjPlot-1.7/sjPlot/R/sjPlotPCA.R                  |   24 
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 156 files changed, 11693 insertions(+), 9699 deletions(-)

More information about sjPlot at CRAN
Permanent link

New package rgrass7 with initial version 0.1-0
Package: rgrass7
Version: 0.1-0
Date: 2015-03-11
Title: Interface Between GRASS 7 Geographical Information System and R
Authors@R: c( person("Roger", "Bivand", role = c("cre", "aut"), email = "Roger.Bivand@nhh.no"), person("Rainer", "Krug", role = "ctb", email="Rainer@krugs.de"), person("Markus", "Neteler", role = "ctb"))
Description: Interpreted interface between GRASS 7 geographical information system and R, based on starting R from within the GRASS environment, or running free-standing R in a temporary GRASS location; the package provides facilities for using all GRASS commands from the R command line. This package may not be used for GRASS 6, for which spgrass6 should be used.
Depends: R (>= 2.12), sp (>= 0.9), XML
Suggests: rgdal (>= 0.8-8)
SystemRequirements: GRASS (>= 7)
License: GPL (>= 2)
URL: http://grass.osgeo.org/
Collate: AAA.R options.R rgrass.R bin_link.R vect_link.R initGRASS.R xml1.R
Packaged: 2015-03-10 20:15:06 UTC; rsb
Author: Roger Bivand [cre, aut], Rainer Krug [ctb], Markus Neteler [ctb]
Maintainer: Roger Bivand
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-11 11:04:53

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Package nlsem updated to version 0.3 with previous version 0.2 dated 2015-02-10

Title: Fitting Structural Equation Mixture Models
Description: Estimation of structural equation models with nonlinear effects and underlying nonnormal distributions.
Author: Nora Umbach [aut, cre], Katharina Naumann [aut], David Hoppe [aut], Holger Brandt [aut], Augustin Kelava [ctb], Bernhard Schmitz [ctb]
Maintainer: Nora Umbach

Diff between nlsem versions 0.2 dated 2015-02-10 and 0.3 dated 2015-03-11

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Package lfe updated to version 2.1-1640 with previous version 2.1-1629 dated 2015-03-05

Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS. Useful for estimating linear models with multiple group fixed effects, and for estimating linear models which uses factors as pure control variables. Includes support for instrumental variables, conditional F statistics for weak instruments, robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure

Diff between lfe versions 2.1-1629 dated 2015-03-05 and 2.1-1640 dated 2015-03-11

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New package graphicalVAR with initial version 0.1.1
Package: graphicalVAR
Type: Package
Title: Graphical VAR for Experience Sampling Data
Version: 0.1.1
Date: 2015-03-05
Author: Sacha Epskamp
Maintainer: Sacha Epskamp
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical VAR model in combination with LASSO and EBIC.
License: GPL (>= 2)
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp (>= 0.11.3), Matrix, glasso, glmnet, mvtnorm, qgraph (>= 1.3.1)
Depends: R (>= 3.1.0)
NeedsCompilation: yes
Packaged: 2015-03-11 10:07:43 UTC; sacha
Repository: CRAN
Date/Publication: 2015-03-11 11:26:08

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Package gems updated to version 1.0.0 with previous version 0.9.5 dated 2014-05-27

Title: Generalized Multistate Simulation Model
Description: Simulate and analyze multistate models with general hazard functions. gems provides functionality for the preparation of hazard functions and parameters, simulation from a general multistate model and predicting future events. The multistate model is not required to be a Markov model and may take the history of previous events into account. In the basic version, it allows to simulate from transition-specific hazard function, whose parameters are multivariable normally distributed.
Author: Luisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer
Maintainer: Luisa Salazar Vizcaya

Diff between gems versions 0.9.5 dated 2014-05-27 and 1.0.0 dated 2015-03-11

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Package dbmss updated to version 2.2.0 with previous version 2.1.2 dated 2014-11-01

Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on spatstat for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon

Diff between dbmss versions 2.1.2 dated 2014-11-01 and 2.2.0 dated 2015-03-11

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New package MCL with initial version 1.0
Package: MCL
Type: Package
Title: Markov Cluster Algorithm
Version: 1.0
Date: 2015-03-11
Author: Martin L. Jäger
Maintainer: Ronja Foraita
Description: Contains the Markov cluster algorithm (MCL) for identifying clusters in networks and graphs. The algorithm simulates random walks on a (n x n) matrix as the adjacency matrix of a graph. It alternates an expansion step and an inflation step until an equilibrium state is reached.
License: GPL (>= 2)
Depends: R (>= 2.10.0)
Imports: expm
Encoding: UTF-8
Packaged: 2015-03-11 08:27:50 UTC; foraita
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-11 09:56:32

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Package gbm updated to version 2.1.1 with previous version 2.1 dated 2013-05-10

Title: Generalized Boosted Regression Models
Description: An implementation of extensions to Freund and Schapire's AdaBoost algorithm and Friedman's gradient boosting machine. Includes regression methods for least squares, absolute loss, t-distribution loss, quantile regression, logistic, multinomial logistic, Poisson, Cox proportional hazards partial likelihood, AdaBoost exponential loss, Huberized hinge loss, and Learning to Rank measures (LambdaMart).
Author: Greg Ridgeway with contributions from others
Maintainer: Harry Southworth

Diff between gbm versions 2.1 dated 2013-05-10 and 2.1.1 dated 2015-03-11

 DESCRIPTION  |   10 +++++-----
 MD5          |    6 +++---
 NAMESPACE    |    7 +++++++
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 4 files changed, 24 insertions(+), 22 deletions(-)

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Package summarytools updated to version 0.3 with previous version 0.2 dated 2014-11-25

Title: Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output
Description: Generates formatted summary tables for vectors and dataframes. Three summarizing functions: 1) 'freq' generates frequency tables reporting counts and proportions (including cumulative); 2) 'descr' gives common central tendency statistics and measures of dispersion for numerical data; 3) 'dfSummary' which attempts to give as much information as possible about a dataframe and its components in a clear, legible table. All three functions can either display plain text tables in the console or write markdown, text or html files to disk. An additional misc function, 'what.is', extends base 'is' function, checking the object against all 'is' functions.
Author: Dominic Comtois
Maintainer: Dominic Comtois

Diff between summarytools versions 0.2 dated 2014-11-25 and 0.3 dated 2015-03-11

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Package showtext updated to version 0.3 with previous version 0.2 dated 2014-01-01

Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts (TrueType, OpenType, Type 1, web fonts, etc.) in R graphs, and supporting most output formats of R graphics including PNG, PDF and SVG. Fonts will be embedded in the graph file, hence after the plot has been created, it no longer relies on the font files. No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu

Diff between showtext versions 0.2 dated 2014-01-01 and 0.3 dated 2015-03-11

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Package NAM updated to version 1.1 with previous version 1.0.2.2 dated 2015-02-03

Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, but also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier

Diff between NAM versions 1.0.2.2 dated 2015-02-03 and 1.1 dated 2015-03-11

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Package multigroup updated to version 0.4.4 with previous version 0.4.3 dated 2015-01-04

Title: Multigroup Data Analysis
Description: Several functions are presented in order to study data in a group structure, where the same set of variables are measured on different groups of individuals.
Author: Aida Eslami, El Mostafa Qannari, Stephanie Bougeard, Gaston Sanchez Questions and comments go to Aida Eslami and Stephanie Bougeard
Maintainer: Aida Eslami

Diff between multigroup versions 0.4.3 dated 2015-01-04 and 0.4.4 dated 2015-03-11

 DESCRIPTION  |   12 ++++++------
 MD5          |    6 +++---
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Package ipdw updated to version 0.2-2 with previous version 0.2-1 dated 2014-06-16

Title: Spatial Interpolation by Inverse Path Distance Weighting
Description: Functions are provided to interpolate georeferenced point data via Inverse Path Distance Weighting. Useful for coastal marine applications where barriers in the landscape preclude interpolation with Euclidean distances.
Author: Joseph Stachelek
Maintainer: Joseph Stachelek

Diff between ipdw versions 0.2-1 dated 2014-06-16 and 0.2-2 dated 2015-03-11

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