Title: Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
Diff between FAmle versions 1.3.2 dated 2015-01-04 and 1.3.3 dated 2015-03-12
Description: Estimate parameters of univariate probability distributions
with maximum likelihood and Bayesian methods.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt
DESCRIPTION | 12 +-
MD5 | 14 +--
NAMESPACE | 7 +
build/vignette.rds |binary
inst/doc/FAmle.R | 210 ++++++++++++++++++++++++++++++----------------------
inst/doc/FAmle.pdf |binary
inst/doc/FAmle.rnw | 145 ++++++++++++++++++++++-------------
vignettes/FAmle.rnw | 145 ++++++++++++++++++++++-------------
8 files changed, 322 insertions(+), 211 deletions(-)
Title: Bootstrap Tolerance Levels for Credit Scoring Validation
Statistics
Diff between boottol versions 1.0 dated 2015-02-20 and 2.0 dated 2015-03-12
Description: Used to create bootstrap tolerance levels for the Kolmogorov-Smirnov (KS) statistic, the area under receiver operator characteristic curve (AUROC) statistic, and the Gini coefficient for each score cutoff. Also provides a bootstrap alternative to the Vasicek test.
Author: Garrett Schiltgen
Maintainer: Garrett Schiltgen
DESCRIPTION | 12 +-
MD5 | 14 +-
NAMESPACE | 3
R/boottol.R | 297 +++++++++++++++++++++++++++----------------------------
R/vastol.R |only
data/vasdata.rda |only
man/boottol.Rd | 16 ++
man/data.Rd | 2
man/vasdata.Rd |only
man/vastol.Rd |only
10 files changed, 174 insertions(+), 170 deletions(-)
Title: Qualitative Validation Methods
Diff between qualV versions 0.3 dated 2011-03-26 and 0.3-1 dated 2015-03-12
Description: Qualitative methods for the validation of models.
Author: K. Gerald van den Boogaart [aut, ths],
Stefanie Rost [aut],
Thomas Petzoldt [aut, ths, cre]
Maintainer: Thomas Petzoldt
DESCRIPTION | 15 +++++++++++----
MD5 |only
NAMESPACE | 9 +++++++++
data/phyto.rda |binary
inst/NEWS | 37 ++++++++++++++++++++-----------------
5 files changed, 40 insertions(+), 21 deletions(-)
Title: Interactive Grammar of Graphics
Diff between ggvis versions 0.4 dated 2014-10-04 and 0.4.1 dated 2015-03-12
Description: An implementation of an interactive grammar of graphics, taking the
best parts of ggplot2, combining them with shiny's reactive framework and
drawing web graphics using vega.
Author: Winston Chang [aut, cre],
Hadley Wickham [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/lib/jquery/AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/lib/jquery-ui/AUTHORS.txt),
Mike Bostock [ctb, cph] (D3 library),
D3 contributors [ctb] (D3 library; authors listed at
https://github.com/mbostock/d3/graphs/contributors),
Trifacta Inc. [cph] (Vega library),
Vega contributors [ctb] (Vega library; authors listed at
https://github.com/trifacta/vega/graphs/contributors)
Maintainer: Winston Chang
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/DESCRIPTION | 49
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/LICENSE |only
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/NAMESPACE | 10
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/dplyr.R | 67
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/ggvis_html.R | 4
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/inputs.R | 19
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/interact_tooltip.R | 5
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/options.R | 4
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/print.R | 22
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/prop.R | 5
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/shiny.R | 14
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/shiny_layout.R | 2
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/zzz.r | 2
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/build/vignette.rds |binary
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/basic/ui.r | 2
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/brush-linked/server.r | 4
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/brush-linked/ui.r | 2
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/rmarkdown/linked_brush.Rmd | 4
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/axes-legends.html | 2665 +--
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/cookbook.html | 4644 +++---
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/ggvis-basics.html | 7301 +++++-----
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/interactivity.html | 1221 -
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/layers.html | 2767 +--
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/overview.html | 476
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/properties-scales.html | 1868 +-
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/css/ggvis.css | 1
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/js/ggvis.js | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/js/shiny-ggvis.js | 20
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/d3/d3.js | 999 -
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/d3/d3.min.js | 10
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/jquery-ui/AUTHORS.txt |only
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/jquery/AUTHORS.txt |only
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/vega/vega.js | 452
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/vega/vega.min.js | 9
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_axis.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_guide_axis.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_guide_legend.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_legend.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_props.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_relative_scales.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_scale.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_tooltip.Rd | 8
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/as.vega.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/auto_group.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/axis_props.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/band.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/bin_vector.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/cocaine.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_align.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_bin.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_boxplot.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_model_prediction.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/create_broker.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/create_input.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/default_options.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/dplyr-ggvis.Rd | 27
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/explain.ggvis.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_boxplots.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_densities.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_f.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_histograms.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/marks.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/padding.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/print.ggvis.Rd | 22
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/prop.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/prop_domain.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/propname_to_scale.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/props.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scale_datetime.Rd | 3
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scale_numeric.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scales.Rd | 3
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/layer/freqpoly-grouped.json | 10
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tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/datetime.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/datetime_hist.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/domain_numeric.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/dual.json | 10
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/hide_guides.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/log.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/basic.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/fill-continuous.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/fill-discrete.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/transform.json | 6
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/testthat/test-props.r | 2
tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/testthat/test-utils-data.r | 14
ui.r | 4
158 files changed, 12559 insertions(+), 11047 deletions(-)
Title: Distributions that are Sometimes Used in Hydrology
Diff between FAdist versions 2.0 dated 2011-09-23 and 2.1 dated 2015-03-12
Description: Probability distributions that are sometimes useful in hydrology.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt
DESCRIPTION | 18 +++----
INDEX | 52 +++++++++++-----------
MD5 | 117 +++++++++++++++++++++++++-------------------------
NAMESPACE |only
R/dgamma3.R | 16 +++---
R/dgev.R | 16 +++---
R/dgp.R | 16 +++---
R/dgumbel.R | 16 +++---
R/dkappa.R | 16 +++---
R/dkappa4.R | 16 +++---
R/dlgamma3.R | 16 +++---
R/dllog.R | 16 +++---
R/dllog3.R | 16 +++---
R/dlnorm3.R | 16 +++---
R/dweibull3.R | 8 +--
R/pgamma3.R | 18 +++----
R/pgev.R | 18 +++----
R/pgp.R | 18 +++----
R/pgumbel.R | 18 +++----
R/pkappa.R | 18 +++----
R/pkappa4.R | 18 +++----
R/plgamma3.R | 18 +++----
R/pllog.R | 18 +++----
R/pllog3.R | 18 +++----
R/plnorm3.R | 18 +++----
R/pweibull3.R | 8 +--
R/qgamma3.R | 18 +++----
R/qgev.R | 18 +++----
R/qgp.R | 18 +++----
R/qgumbel.R | 18 +++----
R/qkappa.R | 18 +++----
R/qkappa4.R | 20 ++++----
R/qlgamma3.R | 18 +++----
R/qllog.R | 18 +++----
R/qllog3.R | 18 +++----
R/qlnorm3.R | 18 +++----
R/qweibull3.R | 18 +++----
R/rgamma3.R | 8 +--
R/rgev.R | 8 +--
R/rgp.R | 8 +--
R/rgumbel.R | 8 +--
R/rkappa.R | 8 +--
R/rkappa4.R | 6 +-
R/rlgamma3.R | 8 +--
R/rllog.R | 8 +--
R/rllog3.R | 8 +--
R/rlnorm3.R | 8 +--
R/rweibull3.R | 8 +--
man/FAdist-package.Rd | 30 ++++++------
man/GAMMA3.Rd | 116 +++++++++++++++++++++++--------------------------
man/GEV.Rd | 111 ++++++++++++++++++++++-------------------------
man/GUMBEL.Rd | 108 ++++++++++++++++++++++------------------------
man/GenPARETO.Rd | 110 +++++++++++++++++++++--------------------------
man/KAPPA.Rd | 106 ++++++++++++++++++++-------------------------
man/KAPPA4.Rd | 114 ++++++++++++++++++++++++------------------------
man/LGAMMA3.Rd | 116 ++++++++++++++++++++++++-------------------------
man/LLOGIS.Rd | 107 +++++++++++++++++++++------------------------
man/LLOGIS3.Rd | 114 ++++++++++++++++++++++++------------------------
man/LNORM3.Rd | 114 +++++++++++++++++++++++-------------------------
man/WEIBULL3.Rd | 112 ++++++++++++++++++++++-------------------------
60 files changed, 1019 insertions(+), 1068 deletions(-)
Title: Identification of Cardinal Dates in Ecological Time Series
Diff between cardidates versions 0.4.5 dated 2013-12-18 and 0.4.6 dated 2015-03-12
Description: Identification of cardinal dates
(begin, time of maximum, end of mass developments)
in ecological time series using fitted Weibull functions.
Author: Susanne Rolinski [aut], René Sachse [aut], Thomas Petzoldt [aut, cre]
Maintainer: Thomas Petzoldt
cardidates-0.4.5/cardidates/vignettes/Z.cls |only
cardidates-0.4.6/cardidates/DESCRIPTION | 11 ++--
cardidates-0.4.6/cardidates/MD5 | 20 ++++----
cardidates-0.4.6/cardidates/NAMESPACE | 2
cardidates-0.4.6/cardidates/R/plot.cardiMetacdw.R | 1
cardidates-0.4.6/cardidates/build |only
cardidates-0.4.6/cardidates/inst/doc/vignette.R | 35 +++++++--------
cardidates-0.4.6/cardidates/inst/doc/vignette.Rnw | 41 ++++++++++++------
cardidates-0.4.6/cardidates/inst/doc/vignette.pdf |binary
cardidates-0.4.6/cardidates/man/cardidates-package.Rd | 4 -
cardidates-0.4.6/cardidates/vignettes/cardidates.bib | 19 ++++++--
cardidates-0.4.6/cardidates/vignettes/vignette.Rnw | 41 ++++++++++++------
12 files changed, 107 insertions(+), 67 deletions(-)
Title: Unified Multiple Testing Procedures
Diff between mutoss versions 0.1-8 dated 2014-02-17 and 0.1-9 dated 2015-03-12
Description: The Mutoss package and accompanying mutossGUI package are
designed to ease the application and comparison of multiple
hypothesis testing procedures.
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus,
Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
DESCRIPTION | 8 +-
MD5 | 14 +--
NEWS | 42 +++++++----
R/Hommel.R | 3
R/localfdr.R | 166 ++++++++++++++++++++++-----------------------
build/vignette.rds |binary
inst/doc/quickstart.pdf |binary
inst/doc/simToolManual.pdf |binary
8 files changed, 123 insertions(+), 110 deletions(-)
Title: Tools for Working with ICD-9 Codes, and Finding Comorbidities
Diff between icd9 versions 1.0 dated 2015-01-27 and 1.1 dated 2015-03-12
Description: Calculate comorbidities, Charlson scores, perform fast and accurate
validation, conversion, manipulation, filtering and comparison of ICD-9-CM
(clinical modification) codes. ICD-9 codes appear numeric but leading and
trailing zeroes, and both decimal and non-decimal "short" format codes
exist. The package enables a work flow from raw lists of ICD-9 codes from
hospital billing databases to comorbidities. ICD-9 to comorbidity mappings
from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included.
Author: Jack O. Wasey [aut, cre, cph]
Maintainer: Jack O. Wasey
icd9-1.0/icd9/R/RcppExportsShim.R |only
icd9-1.0/icd9/R/old.R |only
icd9-1.0/icd9/inst/doc/icd9.R |only
icd9-1.0/icd9/inst/doc/icd9.pdf |only
icd9-1.0/icd9/src/slow.cpp |only
icd9-1.0/icd9/tests/testthat/test-fast-convert.R |only
icd9-1.0/icd9/tests/testthat/test-fast-explain.R |only
icd9-1.0/icd9/tests/testthat/test-fast-icd9.R |only
icd9-1.0/icd9/tests/testthat/test-fast-ranges.R |only
icd9-1.0/icd9/tests/testthat/test-fast-reshape.R |only
icd9-1.0/icd9/tests/testthat/test-fast-sas.R |only
icd9-1.0/icd9/tests/testthat/test-fast-score.R |only
icd9-1.0/icd9/tests/testthat/test-fast-valid.R |only
icd9-1.0/icd9/tests/testthat/test-slow-comorbid.R |only
icd9-1.0/icd9/tests/testthat/test-slow-score.R |only
icd9-1.1/icd9/DESCRIPTION | 14
icd9-1.1/icd9/MD5 | 150 +--
icd9-1.1/icd9/NAMESPACE | 5
icd9-1.1/icd9/R/RcppExports.R | 113 --
icd9-1.1/icd9/R/benchmark.R | 254 ++++-
icd9-1.1/icd9/R/comorbid.R | 241 +++--
icd9-1.1/icd9/R/convert.R | 192 ++--
icd9-1.1/icd9/R/explain.R | 123 +-
icd9-1.1/icd9/R/filter.R | 19
icd9-1.1/icd9/R/manip.R | 11
icd9-1.1/icd9/R/parse.R | 13
icd9-1.1/icd9/R/ranges.R | 91 +-
icd9-1.1/icd9/R/sas.R | 6
icd9-1.1/icd9/R/score.R | 121 +-
icd9-1.1/icd9/R/sysdata.rda |binary
icd9-1.1/icd9/R/util.R | 37
icd9-1.1/icd9/R/valid.R | 80 +
icd9-1.1/icd9/R/zzz.R | 3
icd9-1.1/icd9/README.md | 98 --
icd9-1.1/icd9/build/vignette.rds |binary
icd9-1.1/icd9/data/mappingNames.rda |binary
icd9-1.1/icd9/inst/doc/introduction.R | 15
icd9-1.1/icd9/inst/doc/introduction.Rmd | 27
icd9-1.1/icd9/inst/doc/introduction.html | 675 +++++----------
icd9-1.1/icd9/inst/include/icd9_RcppExports.h | 388 ++------
icd9-1.1/icd9/man/convert.Rd | 7
icd9-1.1/icd9/man/cr.Rd |only
icd9-1.1/icd9/man/icd9AddLeadingZeroes.Rd | 23
icd9-1.1/icd9/man/icd9Charlson.Rd | 10
icd9-1.1/icd9/man/icd9Children.Rd | 33
icd9-1.1/icd9/man/icd9Comorbid.Rd | 48 -
icd9-1.1/icd9/man/icd9ComorbidDfToMat.Rd |only
icd9-1.1/icd9/man/icd9ComorbidMatToDf.Rd |only
icd9-1.1/icd9/man/icd9Condense.Rd | 13
icd9-1.1/icd9/man/icd9Count.Rd | 6
icd9-1.1/icd9/man/icd9DropLeadingZeroes.Rd | 7
icd9-1.1/icd9/man/icd9Explain.Rd | 46 -
icd9-1.1/icd9/man/icd9ExtractAlphaNumeric.Rd | 7
icd9-1.1/icd9/man/icd9GetValid.Rd | 7
icd9-1.1/icd9/man/icd9InReferenceCode.Rd | 7
icd9-1.1/icd9/man/icd9Is.Rd | 10
icd9-1.1/icd9/man/icd9IsReal.Rd | 7
icd9-1.1/icd9/man/icd9IsValid.Rd | 7
icd9-1.1/icd9/man/icd9LongToWide.Rd | 34
icd9-1.1/icd9/man/icd9Sort.Rd | 7
icd9-1.1/icd9/man/icd9WideToLong.Rd | 8
icd9-1.1/icd9/src/Makevars | 9
icd9-1.1/icd9/src/Makevars.win |only
icd9-1.1/icd9/src/RcppExports.cpp | 929 +++++----------------
icd9-1.1/icd9/src/comorbid.cpp | 229 ++---
icd9-1.1/icd9/src/comorbidCommon.cpp |only
icd9-1.1/icd9/src/comorbidSetup.cpp |only
icd9-1.1/icd9/src/convert.cpp | 342 ++++---
icd9-1.1/icd9/src/convert.h |only
icd9-1.1/icd9/src/cutil.c |only
icd9-1.1/icd9/src/cutil.h |only
icd9-1.1/icd9/src/is.cpp | 74 +
icd9-1.1/icd9/src/is.h |only
icd9-1.1/icd9/src/local.h |only
icd9-1.1/icd9/src/longToWide.cpp |only
icd9-1.1/icd9/src/manip.cpp | 119 +-
icd9-1.1/icd9/src/manip.h |only
icd9-1.1/icd9/src/ranges.cpp | 54 -
icd9-1.1/icd9/src/ranges.h |only
icd9-1.1/icd9/src/util.cpp | 73 +
icd9-1.1/icd9/src/util.h |only
icd9-1.1/icd9/tests/testthat/helper-base.R | 8
icd9-1.1/icd9/tests/testthat/test-LongToWide.R |only
icd9-1.1/icd9/tests/testthat/test-comorbid-calcs.R |only
icd9-1.1/icd9/tests/testthat/test-comorbid.R |only
icd9-1.1/icd9/tests/testthat/test-convert.R |only
icd9-1.1/icd9/tests/testthat/test-explain.R |only
icd9-1.1/icd9/tests/testthat/test-filter.R |only
icd9-1.1/icd9/tests/testthat/test-icd9.R |only
icd9-1.1/icd9/tests/testthat/test-is.R | 26
icd9-1.1/icd9/tests/testthat/test-ranges.R |only
icd9-1.1/icd9/tests/testthat/test-reshape.R |only
icd9-1.1/icd9/tests/testthat/test-sas.R |only
icd9-1.1/icd9/tests/testthat/test-score.R |only
icd9-1.1/icd9/tests/testthat/test-util.R | 15
icd9-1.1/icd9/tests/testthat/test-valid.R |only
icd9-1.1/icd9/vignettes/introduction.Rmd | 27
97 files changed, 2292 insertions(+), 2576 deletions(-)
Title: Genome-Wide Association/Interaction Analysis and Rare Variant
Analysis with Family Data
Diff between GWAF versions 2.1 dated 2013-06-07 and 2.2 dated 2015-03-12
Description: Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.
Author: Ming-Huei Chen
Maintainer: Ming-Huei Chen
DESCRIPTION | 17 +++++++----------
MD5 | 4 ++--
NAMESPACE | 4 +++-
3 files changed, 12 insertions(+), 13 deletions(-)
Title: Bayesian Projection of Life Expectancy
Diff between bayesLife versions 2.1-3 dated 2014-11-20 and 2.2-0 dated 2015-03-12
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery; original WinBugs code written by Jennifer Chunn
Maintainer: Hana Sevcikova
ChangeLog | 11 +++++++++++
DESCRIPTION | 10 +++++-----
MD5 | 18 +++++++++---------
R/projection_fcns.R | 27 +++++++++++++++++++--------
R/run_mcmc.R | 20 ++++++++++++--------
R/wpp_data.R | 15 +++++++++------
man/joint.male.estimate.Rd | 4 +++-
man/joint.male.predict.Rd | 3 ++-
man/run.e0.mcmc.Rd | 10 +++++++---
man/run.e0.mcmc.extra.Rd | 7 +++++--
10 files changed, 82 insertions(+), 43 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-10 0.3
2012-11-15 0.2-18
2012-04-20 0.2-17
2011-09-29 0.2-16
2010-01-27 0.2-15
2009-08-25 0.2-14
2009-08-13 0.2-13
2009-07-01 0.2-11
2009-06-09 0.2-10
2009-04-14 0.2-9
2009-03-04 0.2-8
2009-02-25 0.2-6
Title: Tools to Determine DNA Profile Evidence
Diff between likeLTD versions 5.4.0 dated 2014-07-10 and 5.5.0 dated 2015-03-12
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the likeLTD guide at the URL provided,
or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele
likeLTD-5.4.0/likeLTD/data/lgc-allele-freqs-wbp.txt.gz |only
likeLTD-5.4.0/likeLTD/man/lgc-allele-freqs-wbp.Rd |only
likeLTD-5.5.0/likeLTD/DESCRIPTION | 10
likeLTD-5.5.0/likeLTD/MD5 | 103 -
likeLTD-5.5.0/likeLTD/NAMESPACE | 5
likeLTD-5.5.0/likeLTD/R/genetics.R | 177 ++
likeLTD-5.5.0/likeLTD/R/hypothesis.R | 95 +
likeLTD-5.5.0/likeLTD/R/maximize.R | 665 +++-------
likeLTD-5.5.0/likeLTD/R/plotter.R | 2
likeLTD-5.5.0/likeLTD/R/reports.R | 52
likeLTD-5.5.0/likeLTD/data/DNA17-db.txt.gz |only
likeLTD-5.5.0/likeLTD/data/Identifiler-db.txt.gz |only
likeLTD-5.5.0/likeLTD/data/SGMplus-db.txt.gz |only
likeLTD-5.5.0/likeLTD/data/linkage.txt.gz |only
likeLTD-5.5.0/likeLTD/demo/hammer.R | 2
likeLTD-5.5.0/likeLTD/demo/plotter.R | 2
likeLTD-5.5.0/likeLTD/demo/timings.R | 2
likeLTD-5.5.0/likeLTD/inst/doc/likeLTDguide.pdf |binary
likeLTD-5.5.0/likeLTD/inst/doc/usage.R | 14
likeLTD-5.5.0/likeLTD/inst/doc/usage.Rnw | 3
likeLTD-5.5.0/likeLTD/inst/doc/usage.pdf |binary
likeLTD-5.5.0/likeLTD/inst/extdata/hammer/hammer-CSP.csv | 10
likeLTD-5.5.0/likeLTD/inst/extdata/hammer/hammer-reference.csv | 8
likeLTD-5.5.0/likeLTD/inst/extdata/hammer/space-CSP.csv | 10
likeLTD-5.5.0/likeLTD/inst/extdata/hammer/space-reference.csv | 8
likeLTD-5.5.0/likeLTD/inst/extdata/nodropin/hammer-CSP.csv | 10
likeLTD-5.5.0/likeLTD/inst/extdata/nodropin/hammer-reference.csv | 8
likeLTD-5.5.0/likeLTD/inst/extdata/nodropout/CSP.csv | 10
likeLTD-5.5.0/likeLTD/inst/extdata/nodropout/reference.csv | 4
likeLTD-5.5.0/likeLTD/inst/extdata/novictim/hammer-CSP.csv | 10
likeLTD-5.5.0/likeLTD/inst/extdata/novictim/hammer-reference.csv | 4
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_genetics.R | 98 -
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_hypothesis.R | 28
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_nodropin.R | 34
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_nodropout.R | 16
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_novictims.R | 16
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_objective.R | 58
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_objectivePerLocus.R | 12
likeLTD-5.5.0/likeLTD/inst/unitTests/runit_reports.R | 4
likeLTD-5.5.0/likeLTD/man/DNA17-db.Rd |only
likeLTD-5.5.0/likeLTD/man/Identifiler-db.Rd |only
likeLTD-5.5.0/likeLTD/man/SGMplus-db.Rd |only
likeLTD-5.5.0/likeLTD/man/create.likelihood.log.Rd | 2
likeLTD-5.5.0/likeLTD/man/defence.hypothesis.Rd | 29
likeLTD-5.5.0/likeLTD/man/evaluate.Rd | 16
likeLTD-5.5.0/likeLTD/man/evaluate.from.interim.Rd |only
likeLTD-5.5.0/likeLTD/man/get.likely.genotypes.Rd | 6
likeLTD-5.5.0/likeLTD/man/initial.arguments.Rd | 4
likeLTD-5.5.0/likeLTD/man/linkage.Rd |only
likeLTD-5.5.0/likeLTD/man/load.allele.database.Rd | 9
likeLTD-5.5.0/likeLTD/man/locus.likes.Rd | 15
likeLTD-5.5.0/likeLTD/man/objective.functions.Rd | 8
likeLTD-5.5.0/likeLTD/man/optimisation.params.Rd | 20
likeLTD-5.5.0/likeLTD/man/output.report.Rd | 9
likeLTD-5.5.0/likeLTD/man/pack.admin.input.Rd | 7
likeLTD-5.5.0/likeLTD/man/penalties.Rd | 2
likeLTD-5.5.0/likeLTD/man/prosecution.hypothesis.Rd | 33
likeLTD-5.5.0/likeLTD/vignettes/usage.Rnw | 3
58 files changed, 906 insertions(+), 737 deletions(-)
Title: High-Dimensional Kernel Density Estimation and Geometry
Operations
Diff between hypervolume versions 1.2 dated 2015-02-28 and 1.2.2 dated 2015-03-12
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and negative feature detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder
DESCRIPTION | 8 +--
MD5 | 17 ++++----
NAMESPACE | 4 +
R/ZZZ.R |only
R/hypervolume_plot.R | 75 ++++++++++++++++++++++++++++--------
R/hypervolume_set.R | 20 +++++++--
R/hypervolume_sorensen_overlap.R | 3 -
man/hypervolume_set.Rd | 16 ++++---
man/hypervolume_sorensen_overlap.Rd | 2
man/plot.Hypervolume.Rd | 9 +++-
10 files changed, 112 insertions(+), 42 deletions(-)
Title: Graphical VAR for Experience Sampling Data
Diff between graphicalVAR versions 0.1.1 dated 2015-03-11 and 0.1.2 dated 2015-03-12
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical VAR model in combination with LASSO and EBIC.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/methods.R | 2 +-
src/Rothmana.cpp | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Multiple Comparisons and Simultaneous Confidence Intervals
Diff between nparcomp versions 2.5 dated 2014-11-12 and 2.6 dated 2015-03-12
Description: With this package, it is possible to compute nonparametric simultaneous confidence intervals for relative contrast effects in the unbalanced one way layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite Approximation of the degree of freedom or using multivariate range preserving transformations with Logit or Probit as transformation function. 2 sample comparisons can be performed with the same methods described above. There is no assumption on the underlying distribution function, only that the data have to be at least ordinal numbers.
Author: Frank Konietschke
Maintainer: Frank Konietschke
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/mctp.rm.R | 2 +-
R/npar.t.test.R | 2 +-
inst/CITATION | 14 +++++++-------
5 files changed, 17 insertions(+), 17 deletions(-)
Title: Grain-Size Statistics and Description of Sediment
Diff between G2Sd versions 2.1.2 dated 2014-10-09 and 2.1.3 dated 2015-03-12
Description: Full descriptive statistics, physical description of sediment,
metric or phi sieves.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon
G2Sd |only
1 file changed
Title: Functional Data Analysis: K-Mean Alignment
Diff between fdakma versions 1.1.1 dated 2014-06-24 and 1.2 dated 2015-03-12
Description: It jointly performs clustering and alignment of a multidimensional or unidimensional functional dataset by means of k-mean alignment.
Author: Alice Parodi, Mirco Patriarca, Laura Sangalli, Piercesare Secchi, Simone Vantini, Valeria Vitelli
Maintainer: Alice Parodi
DESCRIPTION | 10
MD5 | 22
R/kma.R | 1211 +++++++++++++++++++++++++-----------------------
R/kma.compare.R | 4
R/kma.similarity.R | 4
data/kma.data.rda |binary
man/fdakma-package.Rd | 12
man/kma.Rd | 23
man/kma.compare.Rd | 10
man/kma.data.Rd | 9
man/kma.show.results.Rd | 8
man/kma.similarity.Rd | 11
12 files changed, 700 insertions(+), 624 deletions(-)
Title: Toolkit of Helper Functions to Pre-Process Amplification Data
Description: A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. The package contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experiment
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-19 0.3-2
2008-12-19 0.3-1
2006-12-21 0.2-1
Title: Pull Data from 'trakt.tv'
Diff between tRakt versions 0.9.0 dated 2015-02-24 and 0.13.0 dated 2015-03-12
Description: A wrapper for the trakt.tv APIv2 which uses httr and jsonlite to send non-OAuth2 requests and receive tidied data.
Author: Lukas Burk [aut, cre]
Maintainer: Lukas Burk
tRakt |only
1 file changed
Title: R Commander Plug-in for University Level Applied Statistics
Diff between RcmdrPlugin.NMBU versions 1.8.0.1 dated 2015-02-23 and 1.8.0.4 dated 2015-03-12
More information about RcmdrPlugin.NMBU at CRAN
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland
DESCRIPTION | 16 ++++----
MD5 | 8 ++--
R/NMBU.GUI.Data.R | 2 -
R/NMBU.GUI.Statistics.R | 78 ++++++++++++++++++++--------------------
man/RcmdrPlugin.NMBU-package.Rd | 2 -
5 files changed, 53 insertions(+), 53 deletions(-)
Permanent link
Title: Functional Time Series Analysis
Diff between ftsa versions 4.1 dated 2014-12-10 and 4.2 dated 2015-03-12
Description: Functions for displaying and analyzing functional time series.
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang
ftsa-4.1/ftsa/R/plsPI.r |only
ftsa-4.2/ftsa/ChangeLog | 8 +
ftsa-4.2/ftsa/DESCRIPTION | 16 +--
ftsa-4.2/ftsa/MD5 | 24 ++---
ftsa-4.2/ftsa/NAMESPACE | 11 +-
ftsa-4.2/ftsa/R/MFDM.R |only
ftsa-4.2/ftsa/R/dynupdate.R | 175 +++++++++++++++++++++++---------------
ftsa-4.2/ftsa/R/fdpca.R | 17 ++-
ftsa-4.2/ftsa/R/ftsm.R | 12 ++
ftsa-4.2/ftsa/R/plsPI.R |only
ftsa-4.2/ftsa/R/wpcr.R | 23 +++-
ftsa-4.2/ftsa/build/vignette.rds |binary
ftsa-4.2/ftsa/man/MFDM.Rd |only
ftsa-4.2/ftsa/man/dynupdate.Rd | 2
ftsa-4.2/ftsa/man/ftsa-package.Rd | 70 +++++++--------
15 files changed, 216 insertions(+), 142 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems
Diff between LLSR versions 0.0.1.9000 dated 2015-02-24 and 0.0.1.9015 dated 2015-03-12
Description: The methods implemented here were based in the protocol proposed by Merchuk et al. (1998) and Murugesan & Perumalsamy (2005) to analyse Aqueous Two-Phases Systems. Each function brings in its description the reference for the original article which described it. These methods defines nonlinear equations that can be used to fit experimental data through regression methods and also allow us calculate other important system parameters (such as its critical composition, equivolume concentration and phase's composition). The package will include (every other update) new functions in order to comprise useful functions in liquid-liquid analysis.
Author: Diego F Coelho
Maintainer: Diego F Coelho
DESCRIPTION | 8 ++---
MD5 | 25 +++++++++-------
NAMESPACE | 6 +++
R/datasets.R |only
R/gsnchk.R | 84 ------------------------------------------------------
R/mrchk.R | 50 +++++++++++++++++++++++---------
R/mrgsn.R | 55 +++++++++++++++++++++++++----------
R/plotll.R |only
R/xyJn.R |only
man/mrchk.Rd | 2 -
man/mrchk.plot.Rd | 15 +++++++--
man/mrgsn.plot.Rd | 14 +++++----
man/peg4kslt.Rd | 2 -
man/plotll.Rd | 16 ++++++----
man/xyJn.Rd | 4 --
15 files changed, 134 insertions(+), 147 deletions(-)