Thu, 12 Mar 2015

Package FAmle updated to version 1.3.3 with previous version 1.3.2 dated 2015-01-04

Title: Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
Description: Estimate parameters of univariate probability distributions with maximum likelihood and Bayesian methods.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt

Diff between FAmle versions 1.3.2 dated 2015-01-04 and 1.3.3 dated 2015-03-12

 DESCRIPTION         |   12 +-
 MD5                 |   14 +--
 NAMESPACE           |    7 +
 build/vignette.rds  |binary
 inst/doc/FAmle.R    |  210 ++++++++++++++++++++++++++++++----------------------
 inst/doc/FAmle.pdf  |binary
 inst/doc/FAmle.rnw  |  145 ++++++++++++++++++++++-------------
 vignettes/FAmle.rnw |  145 ++++++++++++++++++++++-------------
 8 files changed, 322 insertions(+), 211 deletions(-)

More information about FAmle at CRAN
Permanent link

Package boottol updated to version 2.0 with previous version 1.0 dated 2015-02-20

Title: Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
Description: Used to create bootstrap tolerance levels for the Kolmogorov-Smirnov (KS) statistic, the area under receiver operator characteristic curve (AUROC) statistic, and the Gini coefficient for each score cutoff. Also provides a bootstrap alternative to the Vasicek test.
Author: Garrett Schiltgen
Maintainer: Garrett Schiltgen

Diff between boottol versions 1.0 dated 2015-02-20 and 2.0 dated 2015-03-12

 DESCRIPTION      |   12 +-
 MD5              |   14 +-
 NAMESPACE        |    3 
 R/boottol.R      |  297 +++++++++++++++++++++++++++----------------------------
 R/vastol.R       |only
 data/vasdata.rda |only
 man/boottol.Rd   |   16 ++
 man/data.Rd      |    2 
 man/vasdata.Rd   |only
 man/vastol.Rd    |only
 10 files changed, 174 insertions(+), 170 deletions(-)

More information about boottol at CRAN
Permanent link

Package qualV updated to version 0.3-1 with previous version 0.3 dated 2011-03-26

Title: Qualitative Validation Methods
Description: Qualitative methods for the validation of models.
Author: K. Gerald van den Boogaart [aut, ths], Stefanie Rost [aut], Thomas Petzoldt [aut, ths, cre]
Maintainer: Thomas Petzoldt

Diff between qualV versions 0.3 dated 2011-03-26 and 0.3-1 dated 2015-03-12

 DESCRIPTION    |   15 +++++++++++----
 MD5            |only
 NAMESPACE      |    9 +++++++++
 data/phyto.rda |binary
 inst/NEWS      |   37 ++++++++++++++++++++-----------------
 5 files changed, 40 insertions(+), 21 deletions(-)

More information about qualV at CRAN
Permanent link

Package ggvis updated to version 0.4.1 with previous version 0.4 dated 2014-10-04

Title: Interactive Grammar of Graphics
Description: An implementation of an interactive grammar of graphics, taking the best parts of ggplot2, combining them with shiny's reactive framework and drawing web graphics using vega.
Author: Winston Chang [aut, cre], Hadley Wickham [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/lib/jquery/AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/lib/jquery-ui/AUTHORS.txt), Mike Bostock [ctb, cph] (D3 library), D3 contributors [ctb] (D3 library; authors listed at https://github.com/mbostock/d3/graphs/contributors), Trifacta Inc. [cph] (Vega library), Vega contributors [ctb] (Vega library; authors listed at https://github.com/trifacta/vega/graphs/contributors)
Maintainer: Winston Chang

Diff between ggvis versions 0.4 dated 2014-10-04 and 0.4.1 dated 2015-03-12

 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/DESCRIPTION                                  |   49 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/LICENSE                                      |only
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/MD5                                          |  313 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/NAMESPACE                                    |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/dplyr.R                                    |   67 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/ggvis_html.R                               |    4 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/inputs.R                                   |   19 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/interact_tooltip.R                         |    5 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/options.R                                  |    4 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/print.R                                    |   22 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/prop.R                                     |    5 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/shiny.R                                    |   14 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/shiny_layout.R                             |    2 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/R/zzz.r                                      |    2 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/build/vignette.rds                           |binary
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/basic/ui.r                         |    2 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/brush-linked/server.r              |    4 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/apps/brush-linked/ui.r                  |    2 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/demo/rmarkdown/linked_brush.Rmd              |    4 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/axes-legends.html                   | 2665 +--
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/cookbook.html                       | 4644 +++---
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/ggvis-basics.html                   | 7301 +++++-----
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/interactivity.html                  | 1221 -
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/layers.html                         | 2767 +--
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/overview.html                       |  476 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/doc/properties-scales.html              | 1868 +-
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/css/ggvis.css                 |    1 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/js/ggvis.js                   |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/ggvis/js/shiny-ggvis.js             |   20 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/d3/d3.js                        |  999 -
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/d3/d3.min.js                    |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/jquery-ui/AUTHORS.txt           |only
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/jquery/AUTHORS.txt              |only
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/vega/vega.js                    |  452 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/inst/www/lib/vega/vega.min.js                |    9 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_axis.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_data.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_guide_axis.Rd                        |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_guide_legend.Rd                      |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_legend.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_props.Rd                             |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_relative_scales.Rd                   |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_scale.Rd                             |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/add_tooltip.Rd                           |    8 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/as.vega.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/auto_group.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/axis_props.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/band.Rd                                  |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/bin_vector.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/cocaine.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_align.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_bin.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_boxplot.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_count.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_density.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_model_prediction.Rd              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_stack.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/compute_tabulate.Rd                      |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/create_broker.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/create_input.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/default_options.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/dplyr-ggvis.Rd                           |   27 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/explain.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/explain.ggvis.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/export_png.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/fullseq.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/get_data.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/ggvis.Rd                                 |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/ggvisControlOutput.Rd                    |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/ggvisOutputElements.Rd                   |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/ggvis_message.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/ggvis_scale.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/group_by.Rd                              |    5 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/handle_brush.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/handle_click.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/handle_resize.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/input_checkbox.Rd                        |    5 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/input_select.Rd                          |    5 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/input_slider.Rd                          |   27 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/input_text.Rd                            |    7 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.axis_props.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.broker.Rd                             |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.dynamic.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.ggvis.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.legend_props.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/is.scaled_value.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/knit_print.ggvis.Rd                      |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_bars.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_boxplots.Rd                        |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_densities.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_f.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_guess.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_histograms.Rd                      |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_lines.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/layer_model_predictions.Rd               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/left_right.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/legend_props.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/linked_brush.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/mark.Rd                                  |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/marks.Rd                                 |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/new_prop.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/padding.Rd                               |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/pipe.Rd                                  |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/print.ggvis.Rd                           |   22 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/prop.Rd                                  |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/prop_domain.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/propname_to_scale.Rd                     |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/props.Rd                                 |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/resolution.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/save_spec.Rd                             |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scale_datetime.Rd                        |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scale_numeric.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scale_ordinal.Rd                         |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scaled_value.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scales.Rd                                |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/scaletype_to_vega_scaletype.Rd           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/set_options.Rd                           |    7 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/set_scale_label.Rd                       |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/shiny-ggvis.Rd                           |    8 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/show_spec.Rd                             |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/show_tooltip.Rd                          |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/sidebarBottomPage.Rd                     |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/singular.Rd                              |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/subvis.Rd                                |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/vector_type.Rd                           |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/vega_data_parser.Rd                      |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/waggle.Rd                                |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/man/zero_range.Rd                            |    3 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/bar/categorical-x.json           |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/bar/continuous-x.json            |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/boxplot/boxplot-categorical.json |   28 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/boxplot/boxplot-continuous.json  |   28 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/boxplot/boxplot-no-outliers.json |   28 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/data/dots.json                   |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/layer/freqpoly-grouped.json      |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/layer/histogram.json             |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/layer/smooth-grouped.json        |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/layer/smooth.json                |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/line/basic.json                  |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/line/layer-line-nominal-x.json   |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/line/layer-line.json             |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/line/sort.json                   |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/bars.json                 |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/combined_legend.json      |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/custom.json               |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/datetime.json             |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/datetime_hist.json        |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/domain_numeric.json       |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/dual.json                 |   10 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/hide_guides.json          |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scales/log.json                  |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/basic.json               |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/fill-continuous.json     |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/fill-discrete.json       |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/specs/scatter/transform.json           |    6 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/testthat/test-props.r                  |    2 
 tmp/cranberry296a57ce7d6d/ggvis-0.4.1/ggvis/tests/testthat/test-utils-data.r             |   14 
 ui.r                                                                                     |    4 
 158 files changed, 12559 insertions(+), 11047 deletions(-)

More information about ggvis at CRAN
Permanent link

Package FAdist updated to version 2.1 with previous version 2.0 dated 2011-09-23

Title: Distributions that are Sometimes Used in Hydrology
Description: Probability distributions that are sometimes useful in hydrology.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt

Diff between FAdist versions 2.0 dated 2011-09-23 and 2.1 dated 2015-03-12

 DESCRIPTION           |   18 +++----
 INDEX                 |   52 +++++++++++-----------
 MD5                   |  117 +++++++++++++++++++++++++-------------------------
 NAMESPACE             |only
 R/dgamma3.R           |   16 +++---
 R/dgev.R              |   16 +++---
 R/dgp.R               |   16 +++---
 R/dgumbel.R           |   16 +++---
 R/dkappa.R            |   16 +++---
 R/dkappa4.R           |   16 +++---
 R/dlgamma3.R          |   16 +++---
 R/dllog.R             |   16 +++---
 R/dllog3.R            |   16 +++---
 R/dlnorm3.R           |   16 +++---
 R/dweibull3.R         |    8 +--
 R/pgamma3.R           |   18 +++----
 R/pgev.R              |   18 +++----
 R/pgp.R               |   18 +++----
 R/pgumbel.R           |   18 +++----
 R/pkappa.R            |   18 +++----
 R/pkappa4.R           |   18 +++----
 R/plgamma3.R          |   18 +++----
 R/pllog.R             |   18 +++----
 R/pllog3.R            |   18 +++----
 R/plnorm3.R           |   18 +++----
 R/pweibull3.R         |    8 +--
 R/qgamma3.R           |   18 +++----
 R/qgev.R              |   18 +++----
 R/qgp.R               |   18 +++----
 R/qgumbel.R           |   18 +++----
 R/qkappa.R            |   18 +++----
 R/qkappa4.R           |   20 ++++----
 R/qlgamma3.R          |   18 +++----
 R/qllog.R             |   18 +++----
 R/qllog3.R            |   18 +++----
 R/qlnorm3.R           |   18 +++----
 R/qweibull3.R         |   18 +++----
 R/rgamma3.R           |    8 +--
 R/rgev.R              |    8 +--
 R/rgp.R               |    8 +--
 R/rgumbel.R           |    8 +--
 R/rkappa.R            |    8 +--
 R/rkappa4.R           |    6 +-
 R/rlgamma3.R          |    8 +--
 R/rllog.R             |    8 +--
 R/rllog3.R            |    8 +--
 R/rlnorm3.R           |    8 +--
 R/rweibull3.R         |    8 +--
 man/FAdist-package.Rd |   30 ++++++------
 man/GAMMA3.Rd         |  116 +++++++++++++++++++++++--------------------------
 man/GEV.Rd            |  111 ++++++++++++++++++++++-------------------------
 man/GUMBEL.Rd         |  108 ++++++++++++++++++++++------------------------
 man/GenPARETO.Rd      |  110 +++++++++++++++++++++--------------------------
 man/KAPPA.Rd          |  106 ++++++++++++++++++++-------------------------
 man/KAPPA4.Rd         |  114 ++++++++++++++++++++++++------------------------
 man/LGAMMA3.Rd        |  116 ++++++++++++++++++++++++-------------------------
 man/LLOGIS.Rd         |  107 +++++++++++++++++++++------------------------
 man/LLOGIS3.Rd        |  114 ++++++++++++++++++++++++------------------------
 man/LNORM3.Rd         |  114 +++++++++++++++++++++++-------------------------
 man/WEIBULL3.Rd       |  112 ++++++++++++++++++++++-------------------------
 60 files changed, 1019 insertions(+), 1068 deletions(-)

More information about FAdist at CRAN
Permanent link

New package CFC with initial version 0.7.0
Package: CFC
Type: Package
Title: Cause-Specific Framework for Competing-Risk Analysis
Version: 0.7.0
Date: 2015-03-11
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: Functions for combining survival curves of competing risks to produce cumulative incidence and event-free probability functions, and for summarizing and plotting the results. Survival curves can be either time-denominated or probability-denominated. Point estimates as well as Bayesian, sample-based representations of survival can utilize this framework.
License: GPL (>= 2)
Suggests: survival, BSGW, BayesMixSurv
Imports: abind
Packaged: 2015-03-12 21:53:51 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-12 23:16:34

More information about CFC at CRAN
Permanent link

Package cardidates updated to version 0.4.6 with previous version 0.4.5 dated 2013-12-18

Title: Identification of Cardinal Dates in Ecological Time Series
Description: Identification of cardinal dates (begin, time of maximum, end of mass developments) in ecological time series using fitted Weibull functions.
Author: Susanne Rolinski [aut], René Sachse [aut], Thomas Petzoldt [aut, cre]
Maintainer: Thomas Petzoldt

Diff between cardidates versions 0.4.5 dated 2013-12-18 and 0.4.6 dated 2015-03-12

 cardidates-0.4.5/cardidates/vignettes/Z.cls           |only
 cardidates-0.4.6/cardidates/DESCRIPTION               |   11 ++--
 cardidates-0.4.6/cardidates/MD5                       |   20 ++++----
 cardidates-0.4.6/cardidates/NAMESPACE                 |    2 
 cardidates-0.4.6/cardidates/R/plot.cardiMetacdw.R     |    1 
 cardidates-0.4.6/cardidates/build                     |only
 cardidates-0.4.6/cardidates/inst/doc/vignette.R       |   35 +++++++--------
 cardidates-0.4.6/cardidates/inst/doc/vignette.Rnw     |   41 ++++++++++++------
 cardidates-0.4.6/cardidates/inst/doc/vignette.pdf     |binary
 cardidates-0.4.6/cardidates/man/cardidates-package.Rd |    4 -
 cardidates-0.4.6/cardidates/vignettes/cardidates.bib  |   19 ++++++--
 cardidates-0.4.6/cardidates/vignettes/vignette.Rnw    |   41 ++++++++++++------
 12 files changed, 107 insertions(+), 67 deletions(-)

More information about cardidates at CRAN
Permanent link

Package mutoss updated to version 0.1-9 with previous version 0.1-8 dated 2014-02-17

Title: Unified Multiple Testing Procedures
Description: The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer, Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer

Diff between mutoss versions 0.1-8 dated 2014-02-17 and 0.1-9 dated 2015-03-12

 DESCRIPTION                |    8 +-
 MD5                        |   14 +--
 NEWS                       |   42 +++++++----
 R/Hommel.R                 |    3 
 R/localfdr.R               |  166 ++++++++++++++++++++++-----------------------
 build/vignette.rds         |binary
 inst/doc/quickstart.pdf    |binary
 inst/doc/simToolManual.pdf |binary
 8 files changed, 123 insertions(+), 110 deletions(-)

More information about mutoss at CRAN
Permanent link

Package icd9 updated to version 1.1 with previous version 1.0 dated 2015-01-27

Title: Tools for Working with ICD-9 Codes, and Finding Comorbidities
Description: Calculate comorbidities, Charlson scores, perform fast and accurate validation, conversion, manipulation, filtering and comparison of ICD-9-CM (clinical modification) codes. ICD-9 codes appear numeric but leading and trailing zeroes, and both decimal and non-decimal "short" format codes exist. The package enables a work flow from raw lists of ICD-9 codes from hospital billing databases to comorbidities. ICD-9 to comorbidity mappings from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included.
Author: Jack O. Wasey [aut, cre, cph]
Maintainer: Jack O. Wasey

Diff between icd9 versions 1.0 dated 2015-01-27 and 1.1 dated 2015-03-12

 icd9-1.0/icd9/R/RcppExportsShim.R                  |only
 icd9-1.0/icd9/R/old.R                              |only
 icd9-1.0/icd9/inst/doc/icd9.R                      |only
 icd9-1.0/icd9/inst/doc/icd9.pdf                    |only
 icd9-1.0/icd9/src/slow.cpp                         |only
 icd9-1.0/icd9/tests/testthat/test-fast-convert.R   |only
 icd9-1.0/icd9/tests/testthat/test-fast-explain.R   |only
 icd9-1.0/icd9/tests/testthat/test-fast-icd9.R      |only
 icd9-1.0/icd9/tests/testthat/test-fast-ranges.R    |only
 icd9-1.0/icd9/tests/testthat/test-fast-reshape.R   |only
 icd9-1.0/icd9/tests/testthat/test-fast-sas.R       |only
 icd9-1.0/icd9/tests/testthat/test-fast-score.R     |only
 icd9-1.0/icd9/tests/testthat/test-fast-valid.R     |only
 icd9-1.0/icd9/tests/testthat/test-slow-comorbid.R  |only
 icd9-1.0/icd9/tests/testthat/test-slow-score.R     |only
 icd9-1.1/icd9/DESCRIPTION                          |   14 
 icd9-1.1/icd9/MD5                                  |  150 +--
 icd9-1.1/icd9/NAMESPACE                            |    5 
 icd9-1.1/icd9/R/RcppExports.R                      |  113 --
 icd9-1.1/icd9/R/benchmark.R                        |  254 ++++-
 icd9-1.1/icd9/R/comorbid.R                         |  241 +++--
 icd9-1.1/icd9/R/convert.R                          |  192 ++--
 icd9-1.1/icd9/R/explain.R                          |  123 +-
 icd9-1.1/icd9/R/filter.R                           |   19 
 icd9-1.1/icd9/R/manip.R                            |   11 
 icd9-1.1/icd9/R/parse.R                            |   13 
 icd9-1.1/icd9/R/ranges.R                           |   91 +-
 icd9-1.1/icd9/R/sas.R                              |    6 
 icd9-1.1/icd9/R/score.R                            |  121 +-
 icd9-1.1/icd9/R/sysdata.rda                        |binary
 icd9-1.1/icd9/R/util.R                             |   37 
 icd9-1.1/icd9/R/valid.R                            |   80 +
 icd9-1.1/icd9/R/zzz.R                              |    3 
 icd9-1.1/icd9/README.md                            |   98 --
 icd9-1.1/icd9/build/vignette.rds                   |binary
 icd9-1.1/icd9/data/mappingNames.rda                |binary
 icd9-1.1/icd9/inst/doc/introduction.R              |   15 
 icd9-1.1/icd9/inst/doc/introduction.Rmd            |   27 
 icd9-1.1/icd9/inst/doc/introduction.html           |  675 +++++----------
 icd9-1.1/icd9/inst/include/icd9_RcppExports.h      |  388 ++------
 icd9-1.1/icd9/man/convert.Rd                       |    7 
 icd9-1.1/icd9/man/cr.Rd                            |only
 icd9-1.1/icd9/man/icd9AddLeadingZeroes.Rd          |   23 
 icd9-1.1/icd9/man/icd9Charlson.Rd                  |   10 
 icd9-1.1/icd9/man/icd9Children.Rd                  |   33 
 icd9-1.1/icd9/man/icd9Comorbid.Rd                  |   48 -
 icd9-1.1/icd9/man/icd9ComorbidDfToMat.Rd           |only
 icd9-1.1/icd9/man/icd9ComorbidMatToDf.Rd           |only
 icd9-1.1/icd9/man/icd9Condense.Rd                  |   13 
 icd9-1.1/icd9/man/icd9Count.Rd                     |    6 
 icd9-1.1/icd9/man/icd9DropLeadingZeroes.Rd         |    7 
 icd9-1.1/icd9/man/icd9Explain.Rd                   |   46 -
 icd9-1.1/icd9/man/icd9ExtractAlphaNumeric.Rd       |    7 
 icd9-1.1/icd9/man/icd9GetValid.Rd                  |    7 
 icd9-1.1/icd9/man/icd9InReferenceCode.Rd           |    7 
 icd9-1.1/icd9/man/icd9Is.Rd                        |   10 
 icd9-1.1/icd9/man/icd9IsReal.Rd                    |    7 
 icd9-1.1/icd9/man/icd9IsValid.Rd                   |    7 
 icd9-1.1/icd9/man/icd9LongToWide.Rd                |   34 
 icd9-1.1/icd9/man/icd9Sort.Rd                      |    7 
 icd9-1.1/icd9/man/icd9WideToLong.Rd                |    8 
 icd9-1.1/icd9/src/Makevars                         |    9 
 icd9-1.1/icd9/src/Makevars.win                     |only
 icd9-1.1/icd9/src/RcppExports.cpp                  |  929 +++++----------------
 icd9-1.1/icd9/src/comorbid.cpp                     |  229 ++---
 icd9-1.1/icd9/src/comorbidCommon.cpp               |only
 icd9-1.1/icd9/src/comorbidSetup.cpp                |only
 icd9-1.1/icd9/src/convert.cpp                      |  342 ++++---
 icd9-1.1/icd9/src/convert.h                        |only
 icd9-1.1/icd9/src/cutil.c                          |only
 icd9-1.1/icd9/src/cutil.h                          |only
 icd9-1.1/icd9/src/is.cpp                           |   74 +
 icd9-1.1/icd9/src/is.h                             |only
 icd9-1.1/icd9/src/local.h                          |only
 icd9-1.1/icd9/src/longToWide.cpp                   |only
 icd9-1.1/icd9/src/manip.cpp                        |  119 +-
 icd9-1.1/icd9/src/manip.h                          |only
 icd9-1.1/icd9/src/ranges.cpp                       |   54 -
 icd9-1.1/icd9/src/ranges.h                         |only
 icd9-1.1/icd9/src/util.cpp                         |   73 +
 icd9-1.1/icd9/src/util.h                           |only
 icd9-1.1/icd9/tests/testthat/helper-base.R         |    8 
 icd9-1.1/icd9/tests/testthat/test-LongToWide.R     |only
 icd9-1.1/icd9/tests/testthat/test-comorbid-calcs.R |only
 icd9-1.1/icd9/tests/testthat/test-comorbid.R       |only
 icd9-1.1/icd9/tests/testthat/test-convert.R        |only
 icd9-1.1/icd9/tests/testthat/test-explain.R        |only
 icd9-1.1/icd9/tests/testthat/test-filter.R         |only
 icd9-1.1/icd9/tests/testthat/test-icd9.R           |only
 icd9-1.1/icd9/tests/testthat/test-is.R             |   26 
 icd9-1.1/icd9/tests/testthat/test-ranges.R         |only
 icd9-1.1/icd9/tests/testthat/test-reshape.R        |only
 icd9-1.1/icd9/tests/testthat/test-sas.R            |only
 icd9-1.1/icd9/tests/testthat/test-score.R          |only
 icd9-1.1/icd9/tests/testthat/test-util.R           |   15 
 icd9-1.1/icd9/tests/testthat/test-valid.R          |only
 icd9-1.1/icd9/vignettes/introduction.Rmd           |   27 
 97 files changed, 2292 insertions(+), 2576 deletions(-)

More information about icd9 at CRAN
Permanent link

Package GWAF updated to version 2.2 with previous version 2.1 dated 2013-06-07

Title: Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
Description: Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.
Author: Ming-Huei Chen and Qiong Yang
Maintainer: Ming-Huei Chen

Diff between GWAF versions 2.1 dated 2013-06-07 and 2.2 dated 2015-03-12

 DESCRIPTION |   17 +++++++----------
 MD5         |    4 ++--
 NAMESPACE   |    4 +++-
 3 files changed, 12 insertions(+), 13 deletions(-)

More information about GWAF at CRAN
Permanent link

Package bayesLife updated to version 2.2-0 with previous version 2.1-3 dated 2014-11-20

Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery; original WinBugs code written by Jennifer Chunn
Maintainer: Hana Sevcikova

Diff between bayesLife versions 2.1-3 dated 2014-11-20 and 2.2-0 dated 2015-03-12

 ChangeLog                  |   11 +++++++++++
 DESCRIPTION                |   10 +++++-----
 MD5                        |   18 +++++++++---------
 R/projection_fcns.R        |   27 +++++++++++++++++++--------
 R/run_mcmc.R               |   20 ++++++++++++--------
 R/wpp_data.R               |   15 +++++++++------
 man/joint.male.estimate.Rd |    4 +++-
 man/joint.male.predict.Rd  |    3 ++-
 man/run.e0.mcmc.Rd         |   10 +++++++---
 man/run.e0.mcmc.extra.Rd   |    7 +++++--
 10 files changed, 82 insertions(+), 43 deletions(-)

More information about bayesLife at CRAN
Permanent link

Package rgrs (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-10 0.3
2012-11-15 0.2-18
2012-04-20 0.2-17
2011-09-29 0.2-16
2010-01-27 0.2-15
2009-08-25 0.2-14
2009-08-13 0.2-13
2009-07-01 0.2-11
2009-06-09 0.2-10
2009-04-14 0.2-9
2009-03-04 0.2-8
2009-02-25 0.2-6

Permanent link
Package likeLTD updated to version 5.5.0 with previous version 5.4.0 dated 2014-07-10

Title: Tools to Determine DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence. For further information see the likeLTD guide at the URL provided, or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele

Diff between likeLTD versions 5.4.0 dated 2014-07-10 and 5.5.0 dated 2015-03-12

 likeLTD-5.4.0/likeLTD/data/lgc-allele-freqs-wbp.txt.gz           |only
 likeLTD-5.4.0/likeLTD/man/lgc-allele-freqs-wbp.Rd                |only
 likeLTD-5.5.0/likeLTD/DESCRIPTION                                |   10 
 likeLTD-5.5.0/likeLTD/MD5                                        |  103 -
 likeLTD-5.5.0/likeLTD/NAMESPACE                                  |    5 
 likeLTD-5.5.0/likeLTD/R/genetics.R                               |  177 ++
 likeLTD-5.5.0/likeLTD/R/hypothesis.R                             |   95 +
 likeLTD-5.5.0/likeLTD/R/maximize.R                               |  665 +++-------
 likeLTD-5.5.0/likeLTD/R/plotter.R                                |    2 
 likeLTD-5.5.0/likeLTD/R/reports.R                                |   52 
 likeLTD-5.5.0/likeLTD/data/DNA17-db.txt.gz                       |only
 likeLTD-5.5.0/likeLTD/data/Identifiler-db.txt.gz                 |only
 likeLTD-5.5.0/likeLTD/data/SGMplus-db.txt.gz                     |only
 likeLTD-5.5.0/likeLTD/data/linkage.txt.gz                        |only
 likeLTD-5.5.0/likeLTD/demo/hammer.R                              |    2 
 likeLTD-5.5.0/likeLTD/demo/plotter.R                             |    2 
 likeLTD-5.5.0/likeLTD/demo/timings.R                             |    2 
 likeLTD-5.5.0/likeLTD/inst/doc/likeLTDguide.pdf                  |binary
 likeLTD-5.5.0/likeLTD/inst/doc/usage.R                           |   14 
 likeLTD-5.5.0/likeLTD/inst/doc/usage.Rnw                         |    3 
 likeLTD-5.5.0/likeLTD/inst/doc/usage.pdf                         |binary
 likeLTD-5.5.0/likeLTD/inst/extdata/hammer/hammer-CSP.csv         |   10 
 likeLTD-5.5.0/likeLTD/inst/extdata/hammer/hammer-reference.csv   |    8 
 likeLTD-5.5.0/likeLTD/inst/extdata/hammer/space-CSP.csv          |   10 
 likeLTD-5.5.0/likeLTD/inst/extdata/hammer/space-reference.csv    |    8 
 likeLTD-5.5.0/likeLTD/inst/extdata/nodropin/hammer-CSP.csv       |   10 
 likeLTD-5.5.0/likeLTD/inst/extdata/nodropin/hammer-reference.csv |    8 
 likeLTD-5.5.0/likeLTD/inst/extdata/nodropout/CSP.csv             |   10 
 likeLTD-5.5.0/likeLTD/inst/extdata/nodropout/reference.csv       |    4 
 likeLTD-5.5.0/likeLTD/inst/extdata/novictim/hammer-CSP.csv       |   10 
 likeLTD-5.5.0/likeLTD/inst/extdata/novictim/hammer-reference.csv |    4 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_genetics.R            |   98 -
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_hypothesis.R          |   28 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_nodropin.R            |   34 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_nodropout.R           |   16 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_novictims.R           |   16 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_objective.R           |   58 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_objectivePerLocus.R   |   12 
 likeLTD-5.5.0/likeLTD/inst/unitTests/runit_reports.R             |    4 
 likeLTD-5.5.0/likeLTD/man/DNA17-db.Rd                            |only
 likeLTD-5.5.0/likeLTD/man/Identifiler-db.Rd                      |only
 likeLTD-5.5.0/likeLTD/man/SGMplus-db.Rd                          |only
 likeLTD-5.5.0/likeLTD/man/create.likelihood.log.Rd               |    2 
 likeLTD-5.5.0/likeLTD/man/defence.hypothesis.Rd                  |   29 
 likeLTD-5.5.0/likeLTD/man/evaluate.Rd                            |   16 
 likeLTD-5.5.0/likeLTD/man/evaluate.from.interim.Rd               |only
 likeLTD-5.5.0/likeLTD/man/get.likely.genotypes.Rd                |    6 
 likeLTD-5.5.0/likeLTD/man/initial.arguments.Rd                   |    4 
 likeLTD-5.5.0/likeLTD/man/linkage.Rd                             |only
 likeLTD-5.5.0/likeLTD/man/load.allele.database.Rd                |    9 
 likeLTD-5.5.0/likeLTD/man/locus.likes.Rd                         |   15 
 likeLTD-5.5.0/likeLTD/man/objective.functions.Rd                 |    8 
 likeLTD-5.5.0/likeLTD/man/optimisation.params.Rd                 |   20 
 likeLTD-5.5.0/likeLTD/man/output.report.Rd                       |    9 
 likeLTD-5.5.0/likeLTD/man/pack.admin.input.Rd                    |    7 
 likeLTD-5.5.0/likeLTD/man/penalties.Rd                           |    2 
 likeLTD-5.5.0/likeLTD/man/prosecution.hypothesis.Rd              |   33 
 likeLTD-5.5.0/likeLTD/vignettes/usage.Rnw                        |    3 
 58 files changed, 906 insertions(+), 737 deletions(-)

More information about likeLTD at CRAN
Permanent link

Package hypervolume updated to version 1.2.2 with previous version 1.2 dated 2015-02-28

Title: High-Dimensional Kernel Density Estimation and Geometry Operations
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and negative feature detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder

Diff between hypervolume versions 1.2 dated 2015-02-28 and 1.2.2 dated 2015-03-12

 DESCRIPTION                         |    8 +--
 MD5                                 |   17 ++++----
 NAMESPACE                           |    4 +
 R/ZZZ.R                             |only
 R/hypervolume_plot.R                |   75 ++++++++++++++++++++++++++++--------
 R/hypervolume_set.R                 |   20 +++++++--
 R/hypervolume_sorensen_overlap.R    |    3 -
 man/hypervolume_set.Rd              |   16 ++++---
 man/hypervolume_sorensen_overlap.Rd |    2 
 man/plot.Hypervolume.Rd             |    9 +++-
 10 files changed, 112 insertions(+), 42 deletions(-)

More information about hypervolume at CRAN
Permanent link

Package graphicalVAR updated to version 0.1.2 with previous version 0.1.1 dated 2015-03-11

Title: Graphical VAR for Experience Sampling Data
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical VAR model in combination with LASSO and EBIC.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp

Diff between graphicalVAR versions 0.1.1 dated 2015-03-11 and 0.1.2 dated 2015-03-12

 DESCRIPTION      |    8 ++++----
 MD5              |    6 +++---
 R/methods.R      |    2 +-
 src/Rothmana.cpp |    2 +-
 4 files changed, 9 insertions(+), 9 deletions(-)

More information about graphicalVAR at CRAN
Permanent link

Package nparcomp updated to version 2.6 with previous version 2.5 dated 2014-11-12

Title: Multiple Comparisons and Simultaneous Confidence Intervals
Description: With this package, it is possible to compute nonparametric simultaneous confidence intervals for relative contrast effects in the unbalanced one way layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite Approximation of the degree of freedom or using multivariate range preserving transformations with Logit or Probit as transformation function. 2 sample comparisons can be performed with the same methods described above. There is no assumption on the underlying distribution function, only that the data have to be at least ordinal numbers.
Author: Frank Konietschke
Maintainer: Frank Konietschke

Diff between nparcomp versions 2.5 dated 2014-11-12 and 2.6 dated 2015-03-12

 DESCRIPTION     |    8 ++++----
 MD5             |    8 ++++----
 R/mctp.rm.R     |    2 +-
 R/npar.t.test.R |    2 +-
 inst/CITATION   |   14 +++++++-------
 5 files changed, 17 insertions(+), 17 deletions(-)

More information about nparcomp at CRAN
Permanent link

Package G2Sd updated to version 2.1.3 with previous version 2.1.2 dated 2014-10-09

Title: Grain-Size Statistics and Description of Sediment
Description: Full descriptive statistics, physical description of sediment, metric or phi sieves.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon

Diff between G2Sd versions 2.1.2 dated 2014-10-09 and 2.1.3 dated 2015-03-12

 G2Sd |only
 1 file changed

More information about G2Sd at CRAN
Permanent link

Package fdakma updated to version 1.2 with previous version 1.1.1 dated 2014-06-24

Title: Functional Data Analysis: K-Mean Alignment
Description: It jointly performs clustering and alignment of a multidimensional or unidimensional functional dataset by means of k-mean alignment.
Author: Alice Parodi, Mirco Patriarca, Laura Sangalli, Piercesare Secchi, Simone Vantini, Valeria Vitelli
Maintainer: Alice Parodi

Diff between fdakma versions 1.1.1 dated 2014-06-24 and 1.2 dated 2015-03-12

 DESCRIPTION             |   10 
 MD5                     |   22 
 R/kma.R                 | 1211 +++++++++++++++++++++++++-----------------------
 R/kma.compare.R         |    4 
 R/kma.similarity.R      |    4 
 data/kma.data.rda       |binary
 man/fdakma-package.Rd   |   12 
 man/kma.Rd              |   23 
 man/kma.compare.Rd      |   10 
 man/kma.data.Rd         |    9 
 man/kma.show.results.Rd |    8 
 man/kma.similarity.Rd   |   11 
 12 files changed, 700 insertions(+), 624 deletions(-)

More information about fdakma at CRAN
Permanent link

Package chipPCR updated to version 0.0.8-8 with previous version 0.0.8-6 dated 2015-02-22

Title: Toolkit of Helper Functions to Pre-Process Amplification Data
Description: A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. The package contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experiment

Permanent link

Package qp (with last version 0.3-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-19 0.3-2
2008-12-19 0.3-1
2006-12-21 0.2-1

Permanent link
Package tRakt updated to version 0.13.0 with previous version 0.9.0 dated 2015-02-24

Title: Pull Data from 'trakt.tv'
Description: A wrapper for the trakt.tv APIv2 which uses httr and jsonlite to send non-OAuth2 requests and receive tidied data.
Author: Lukas Burk [aut, cre]
Maintainer: Lukas Burk

Diff between tRakt versions 0.9.0 dated 2015-02-24 and 0.13.0 dated 2015-03-12

 tRakt |only
 1 file changed

More information about tRakt at CRAN
Permanent link

New package RxnSim with initial version 1.0
Package: RxnSim
Type: Package
Title: Functions to Compute Chemical Reaction Similarity
Version: 1.0
Date: 2015-03-12
Authors@R: person("Varun", "Giri", role=c("aut", "cre"), email="varungiri@gmail.com")
Maintainer: Varun Giri
Description: RxnSim provides methods to compute chemical similarity between two or more reactions and molecules. Molecular similarity is computed based on structural features. Reaction similarity is a function of similarities of participating molecules. The package additionally provides functionality to mask chemical substructures for weighted similarity computations. It uses rCDK and fingerprint packages for cheminformatics functionality.
License: GPL
Depends: R (>= 2.5.0)
Imports: rJava, fingerprint, rcdk (>= 3.3.2)
Packaged: 2015-03-12 07:21:27 UTC; varungiri
Author: Varun Giri [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-12 09:37:28

More information about RxnSim at CRAN
Permanent link

Package RcmdrPlugin.NMBU updated to version 1.8.0.4 with previous version 1.8.0.1 dated 2015-02-23

Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
Author: Kristian Hovde Liland [aut, cre], Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland

Diff between RcmdrPlugin.NMBU versions 1.8.0.1 dated 2015-02-23 and 1.8.0.4 dated 2015-03-12

 DESCRIPTION                     |   16 ++++----
 MD5                             |    8 ++--
 R/NMBU.GUI.Data.R               |    2 -
 R/NMBU.GUI.Statistics.R         |   78 ++++++++++++++++++++--------------------
 man/RcmdrPlugin.NMBU-package.Rd |    2 -
 5 files changed, 53 insertions(+), 53 deletions(-)

More information about RcmdrPlugin.NMBU at CRAN
Permanent link

Package ftsa updated to version 4.2 with previous version 4.1 dated 2014-12-10

Title: Functional Time Series Analysis
Description: Functions for displaying and analyzing functional time series.
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang

Diff between ftsa versions 4.1 dated 2014-12-10 and 4.2 dated 2015-03-12

 ftsa-4.1/ftsa/R/plsPI.r           |only
 ftsa-4.2/ftsa/ChangeLog           |    8 +
 ftsa-4.2/ftsa/DESCRIPTION         |   16 +--
 ftsa-4.2/ftsa/MD5                 |   24 ++---
 ftsa-4.2/ftsa/NAMESPACE           |   11 +-
 ftsa-4.2/ftsa/R/MFDM.R            |only
 ftsa-4.2/ftsa/R/dynupdate.R       |  175 +++++++++++++++++++++++---------------
 ftsa-4.2/ftsa/R/fdpca.R           |   17 ++-
 ftsa-4.2/ftsa/R/ftsm.R            |   12 ++
 ftsa-4.2/ftsa/R/plsPI.R           |only
 ftsa-4.2/ftsa/R/wpcr.R            |   23 +++-
 ftsa-4.2/ftsa/build/vignette.rds  |binary
 ftsa-4.2/ftsa/man/MFDM.Rd         |only
 ftsa-4.2/ftsa/man/dynupdate.Rd    |    2 
 ftsa-4.2/ftsa/man/ftsa-package.Rd |   70 +++++++--------
 15 files changed, 216 insertions(+), 142 deletions(-)

More information about ftsa at CRAN
Permanent link

Package LLSR updated to version 0.0.1.9015 with previous version 0.0.1.9000 dated 2015-02-24

Title: Data Analysis of Liquid-Liquid Systems
Description: The methods implemented here were based in the protocol proposed by Merchuk et al. (1998) and Murugesan & Perumalsamy (2005) to analyse Aqueous Two-Phases Systems. Each function brings in its description the reference for the original article which described it. These methods defines nonlinear equations that can be used to fit experimental data through regression methods and also allow us calculate other important system parameters (such as its critical composition, equivolume concentration and phase's composition). The package will include (every other update) new functions in order to comprise useful functions in liquid-liquid analysis.
Author: Diego F Coelho
Maintainer: Diego F Coelho

Diff between LLSR versions 0.0.1.9000 dated 2015-02-24 and 0.0.1.9015 dated 2015-03-12

 DESCRIPTION       |    8 ++---
 MD5               |   25 +++++++++-------
 NAMESPACE         |    6 +++
 R/datasets.R      |only
 R/gsnchk.R        |   84 ------------------------------------------------------
 R/mrchk.R         |   50 +++++++++++++++++++++++---------
 R/mrgsn.R         |   55 +++++++++++++++++++++++++----------
 R/plotll.R        |only
 R/xyJn.R          |only
 man/mrchk.Rd      |    2 -
 man/mrchk.plot.Rd |   15 +++++++--
 man/mrgsn.plot.Rd |   14 +++++----
 man/peg4kslt.Rd   |    2 -
 man/plotll.Rd     |   16 ++++++----
 man/xyJn.Rd       |    4 --
 15 files changed, 134 insertions(+), 147 deletions(-)

More information about LLSR at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.