Fri, 13 Mar 2015

Package netassoc updated to version 0.4.3 with previous version 0.4.1 dated 2015-01-31

Title: Inference of Species Associations from Co-Occurrence Data
Description: Infers species associations from local and regional-scale co-occurrence data (species x site matrices).
Author: Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder

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Package alm updated to version 0.4.0 with previous version 0.3.1 dated 2014-10-29

Title: R Client for the Lagotto Altmetrics Platform
Description: An R interface to the open source article level metrics platform created by the Public Library of Science (PLOS). A number of publishers are using the open source app created by PLOS, so you can drop in a different base URL to the functions in this package to get to not only PLOS data, but data for Crossref, and more as the open source PLOS software is used.
Author: Scott Chamberlain [aut, cre], Carl Boettiger [aut], Karthik Ram [aut], Fenner Martin [aut]
Maintainer: Scott Chamberlain

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Package PReMiuM updated to version 3.1.0 with previous version 3.0.32 dated 2014-12-29

Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection.
Author: David I. Hastie , Silvia Liverani and Sylvia Richardson with contributions from Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi
Maintainer: Silvia Liverani

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Package JMbayes updated to version 0.7-0 with previous version 0.6-1 dated 2014-06-11

Title: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos

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Package xgboost (with last version 0.3-3) was removed from CRAN

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Package poweRlaw updated to version 0.30.1 with previous version 0.30.0 dated 2015-02-20

Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators for a variety of heavy tailed distributions, including both the discrete and continuous power law distributions. Additionally, a goodness-of-fit based approach is used to estimate the lower cut-off for the scaling region.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie

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Package PerFit updated to version 1.3 with previous version 1.2 dated 2014-10-07

Title: Person Fit
Description: Several person-fit statistics (PFSs) are offered. These statistics allow assessing whether individual response patterns to tests or questionnaires are (im)plausible given the other respondents in the sample or given a specified item response theory model. Some PFSs apply to dichotomous data, such as the likelihood-based PFSs (lz, lz*) and the group-based PFSs (personal biserial correlation, caution index, (normed) number of Guttman errors, agreement/disagreement/dependability statistics, U3, ZU3, NCI, Ht). PFSs suitable to polytomous data include extensions of lz, U3, and (normed) number of Guttman errors.
Author: Jorge N. Tendeiro
Maintainer: Jorge N. Tendeiro

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Package pcnetmeta updated to version 1.3 with previous version 1.2 dated 2014-07-19

Title: Methods for Patient-Centered Network Meta-Analysis
Description: Provides functions to conduct network meta-analysis using arm-based method, which was proposed by Zhang et al (2014); contains functions to generate summary table for effect sizes (e.g., odds ratio, population-averaged event rate), plot network comparisons, and plot credible interval for population-averaged event rate.
Author: Lifeng Lin, Jing Zhang , and Haitao Chu
Maintainer: Lifeng Lin

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Package funFEM updated to version 1.1 with previous version 1.0 dated 2014-09-11

Title: Clustering in the Discriminative Functional Subspace
Description: The funFEM algorithm (Bouveyron et al., 2014) allows to cluster functional data by modeling the curves within a common and discriminative functional subspace.
Author: Charles Bouveyron
Maintainer: Charles Bouveyron

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Package bizdays updated to version 0.2.2 with previous version 0.2.1 dated 2015-02-01

Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas
Maintainer: Wilson Freitas

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Package NCBI2R (with last version 1.4.7) was removed from CRAN

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Package bentcableAR (with last version 0.2.3) was removed from CRAN

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Package rriskDistributions (with last version 2.0) was removed from CRAN

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Package NRAIA (with last version 0.9-8) was removed from CRAN

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Package cqrReg (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-01 1.1
2014-11-27 1.0

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Package jackknifeKME (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-10-21 1.1
2013-02-24 1.0

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Package papeR (with last version 0.5-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-11-13 0.5-0
2013-09-13 0.4-0
2013-08-07 0.3

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Package imputeYn (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-10-20 1.2
2013-02-24 1.1
2012-05-06 1.0

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Package npRmpi (with last version 0.60-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-06-27 0.60-2
2014-06-01 0.60-0
2014-01-01 0.50-1.1
2013-03-14 0.50-1
2012-03-06 0.40-13
2011-11-25 0.40-12
2011-10-25 0.40-11
2011-10-24 0.40-10
2011-07-30 0.40-9
2011-06-09 0.40-7
2011-06-02 0.40-6
2011-04-26 0.40-5
2011-01-21 0.40-4
2010-07-25 0.40-3
2010-06-10 0.40-2
2010-05-26 0.40-0
2010-05-18 0.30-9

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Package separationplot updated to version 1.1 with previous version 1.0 dated 2011-06-15

Title: Separation Plots
Description: Functions to generate separation plots for evaluation of model fit.
Author: Brian D. Greenhill, Michael D. Ward and Audrey Sacks
Maintainer: ORPHANED

Diff between separationplot versions 1.0 dated 2011-06-15 and 1.1 dated 2015-03-13

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 R/separationplot.R            |    8 ++------
 R/sp.categorical.R            |    5 +----
 man/separationplot-package.Rd |    4 +++-
 man/separationplot.Rd         |    9 +++++++--
 man/sp.categorical.Rd         |   28 +++++++++++++++++++---------
 8 files changed, 44 insertions(+), 29 deletions(-)

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Package climdex.pcic updated to version 1.1-5.1 with previous version 1.1-5 dated 2015-01-30

Title: PCIC Implementation of Climdex Routines
Description: PCIC's implementation of Climdex routines for computation of extreme climate indices.
Author: David Bronaugh for the Pacific Climate Impacts Consortium
Maintainer: James Hiebert

Diff between climdex.pcic versions 1.1-5 dated 2015-01-30 and 1.1-5.1 dated 2015-03-13

 DESCRIPTION             |    8 ++++----
 MD5                     |    4 ++--
 man/climdexInput.csv.Rd |    2 +-
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Package betas updated to version 0.1.1 with previous version 0.1.0 dated 2015-01-14

Title: Standardized Beta Coefficients
Description: Computes standardized beta coefficients and corresponding standard errors for the following models: linear regression models with numerical covariates only, linear regression models with numerical and factorial covariates, weighted linear regression models, all these linear regression models with interaction terms, and robust linear regression models with numerical covariates only.
Author: Andrea Cantieni [aut, cre]
Maintainer: Andrea Cantieni

Diff between betas versions 0.1.0 dated 2015-01-14 and 0.1.1 dated 2015-03-13

 DESCRIPTION     |   15 ++++++++-------
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 README.md       |    4 ++--
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Package rcbalance updated to version 1.3 with previous version 1.2 dated 2014-11-12

Title: Large, Sparse Optimal Matching with Refined Covariate Balance
Description: Tools for large, sparse optimal matching of treated units and control units in observational studies. Provisions are made for refined covariate balance constraints, which include fine and near-fine balance as special cases. Matches are optimal in the sense that they are computed as solutions to network optimization problems rather than greedy algorithms.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel

Diff between rcbalance versions 1.2 dated 2014-11-12 and 1.3 dated 2015-03-13

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Package Holidays updated to version 1.0-6 with previous version 1.0-0 dated 2011-12-19

Title: Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Description: Contains trading holiday and half-day data that is automatically registered when loaded.
Author: Jeffery Horner, Lars Hansen, Tony Plate
Maintainer: Tony Plate

Diff between Holidays versions 1.0-0 dated 2011-12-19 and 1.0-6 dated 2015-03-13

 DESCRIPTION             |   15 -
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 R/holidays.R            |  397 ++++++++++++++++++++++++++++++++++++++++++++++--
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Package abind updated to version 1.4-3 with previous version 1.4-0 dated 2011-11-27

Title: Combine Multidimensional Arrays
Description: Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'. Works with vectors, matrices, and higher-dimensional arrays. Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.
Author: Tony Plate and Richard Heiberger
Maintainer: Tony Plate

Diff between abind versions 1.4-0 dated 2011-11-27 and 1.4-3 dated 2015-03-13

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 abind-1.4-3/abind/NAMESPACE             |    3 +-
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 abind-1.4-3/abind/tests/abind.R         |    3 ++
 abind-1.4-3/abind/tests/abind.Rout.save |   15 ++++++++++
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 abind-1.4-3/abind/tests/dnns.Rout.save  |only
 14 files changed, 94 insertions(+), 32 deletions(-)

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