Title: Store Objects on Disk Automatically
Diff between track versions 1.0-15 dated 2012-04-13 and 1.1.7 dated 2015-03-14
Description: Automatically stores objects in files on disk
so that files are rewritten when objects are changed, and
so that objects are accessible but do not occupy memory
until they are accessed. Keeps track of times when objects
are created and modified, and caches some basic
characteristics of objects to allow for fast summaries of
objects. Also provides a command history mechanism that
saves the last command to a history file after each
command completes.
Author: Tony Plate
Maintainer: Tony Plate
track-1.0-15/track/NOTES.txt |only
track-1.0-15/track/TODO.txt |only
track-1.0-15/track/doc |only
track-1.0-15/track/inst/performanceTrials/NOTES.txt |only
track-1.1.7/track/DESCRIPTION | 28 +-
track-1.1.7/track/MD5 | 101 +++++----
track-1.1.7/track/NAMESPACE | 4
track-1.1.7/track/NEWS | 63 +++++-
track-1.1.7/track/R/track.R | 20 -
track-1.1.7/track/R/track.attach.R | 38 +++
track-1.1.7/track/R/track.auto.R | 17 +
track-1.1.7/track/R/track.auto.monitor.R | 13 -
track-1.1.7/track/R/track.copy.R | 20 -
track-1.1.7/track/R/track.filename.R | 1
track-1.1.7/track/R/track.history.R | 45 ++--
track-1.1.7/track/R/track.info.R | 2
track-1.1.7/track/R/track.load.R | 9
track-1.1.7/track/R/track.manage.R | 16 -
track-1.1.7/track/R/track.mem.R |only
track-1.1.7/track/R/track.options.R | 10
track-1.1.7/track/R/track.rebuild.R | 19 -
track-1.1.7/track/R/track.rename.R | 85 +++-----
track-1.1.7/track/R/track.rescan.R | 95 ++++-----
track-1.1.7/track/R/track.start.R | 133 +++++++++----
track-1.1.7/track/R/track.summary.R | 3
track-1.1.7/track/R/track.sync.R | 59 +++--
track-1.1.7/track/R/utils.R | 204 +++++++++++++++-----
track-1.1.7/track/inst/sccversion.txt |only
track-1.1.7/track/inst/svnversion.txt |only
track-1.1.7/track/man/track-package.Rd | 151 +++++++++-----
track-1.1.7/track/man/track.attach.Rd | 9
track-1.1.7/track/man/track.copy.Rd | 27 ++
track-1.1.7/track/man/track.design.Rd | 9
track-1.1.7/track/man/track.info.Rd | 34 ++-
track-1.1.7/track/man/track.manage.Rd | 30 ++
track-1.1.7/track/man/track.options.Rd | 37 ++-
track-1.1.7/track/man/track.plugin.lru.Rd | 4
track-1.1.7/track/man/track.rebuild.Rd | 27 +-
track-1.1.7/track/man/track.rename.Rd | 21 +-
track-1.1.7/track/man/track.setup.Rd | 39 ++-
track-1.1.7/track/man/track.status.Rd | 37 ++-
track-1.1.7/track/man/track.summary.Rd | 18 +
track-1.1.7/track/man/track.sync.Rd | 10
track-1.1.7/track/tests/runtests.R | 9
track-1.1.7/track/tests/testBrokenFileSystem.Rt | 18 +
track-1.1.7/track/tests/testFollowObjs.Rt | 3
track-1.1.7/track/tests/testFollowObjsAutoFalse.Rt | 3
track-1.1.7/track/tests/testOptions.Rt | 3
track-1.1.7/track/tests/testSimpleTrack.Rt | 5
track-1.1.7/track/tests/track.attach.Rt | 1
track-1.1.7/track/tests/track.auto.rescan.Rt |only
track-1.1.7/track/tests/track.copy.Rt | 8
track-1.1.7/track/tests/track.rescan.Rt | 11 -
track-1.1.7/track/tests/track.start.Rt | 1
track-1.1.7/track/tests/track.sync.Rt | 4
track-1.1.7/track/vignettes |only
56 files changed, 990 insertions(+), 514 deletions(-)
Title: Transcript-Based Unit Tests that are Easy to Create and Maintain
Diff between scriptests versions 1.0-9 dated 2012-04-13 and 1.0-15 dated 2015-03-14
Description: Support for using .Rt (transcript) tests
in the tests directory of a package. Provides more
convenience and features than the standard .R/.Rout.save
tests. Tests can be run under R CMD check and also
interactively. Provides source.pkg() for quickly loading
code, DLLs, and data from a package for use in an
edit/compile/test development cycle.
Author: Tony Plate
Maintainer: Tony Plate
scriptests-1.0-15/scriptests/DESCRIPTION | 24
scriptests-1.0-15/scriptests/MD5 | 28 -
scriptests-1.0-15/scriptests/NEWS | 5
scriptests-1.0-15/scriptests/R/runPackageTests.R | 7
scriptests-1.0-15/scriptests/R/runScripTests.R | 5
scriptests-1.0-15/scriptests/R/runtests.R | 28 -
scriptests-1.0-15/scriptests/R/source.pkg.R | 617 ++++++++++++-----------
scriptests-1.0-15/scriptests/R/summarizeTests.R | 9
scriptests-1.0-15/scriptests/inst/sccversion.txt |only
scriptests-1.0-15/scriptests/inst/svnversion.txt |only
scriptests-1.0-15/scriptests/man/runtests.Rd | 3
scriptests-1.0-15/scriptests/man/setup.Rd | 6
scriptests-1.0-15/scriptests/man/source.pkg.Rd | 43 +
scriptests-1.0-15/scriptests/vignettes |only
scriptests-1.0-9/scriptests/DevNotes.txt |only
scriptests-1.0-9/scriptests/TODO.txt |only
scriptests-1.0-9/scriptests/doc |only
17 files changed, 443 insertions(+), 332 deletions(-)
Title: Least-Squares Means
Diff between lsmeans versions 2.15 dated 2015-02-07 and 2.16 dated 2015-03-14
Description: Obtain least-squares means for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of least-squares means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell V. Lenth [aut], Maxime Hervé [ctb]
Maintainer: Russ Lenth
DESCRIPTION | 9 +++++----
MD5 | 35 ++++++++++++++++++-----------------
R/helpers.R | 12 ++++++++++--
R/lsmeans.R | 12 +++++++++---
R/lsmip.R | 2 +-
R/nonlin-support.R |only
R/summary.R | 2 +-
inst/NEWS | 12 ++++++++++++
inst/doc/extending.R | 14 +++++++-------
inst/doc/extending.pdf |binary
inst/doc/extending.rnw | 2 ++
inst/doc/using-lsmeans.R | 34 +++++++++++++++++++++++++++-------
inst/doc/using-lsmeans.pdf |binary
inst/doc/using-lsmeans.rnw | 26 +++++++++++++++++++++++---
man/contrast.Rd | 17 ++++++++---------
man/models.Rd | 17 +++++++++--------
tests/tests1.Rout.save | 8 ++++----
vignettes/extending.rnw | 2 ++
vignettes/using-lsmeans.rnw | 26 +++++++++++++++++++++++---
19 files changed, 161 insertions(+), 69 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Diff between gstat versions 1.0-21 dated 2015-01-19 and 1.0-22 dated 2015-03-14
Description: provides variogram modelling; simple, ordinary and universal point or block (co)kriging, spatio-temporal kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre],
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma
DESCRIPTION | 13 +--
MD5 | 104 +++++++++++++-------------
NAMESPACE | 4 -
R/fit.variogram.reml.R | 2
R/gstat.R | 8 +-
R/krige0.R | 2
R/predict.gstat.R | 6 -
R/stVariogramModels.R | 176 ++++++++++++++++++++++++++++++++++++++++-----
R/variogram.default.R | 2
R/variogramLine.R | 11 +-
R/variogramST.R | 47 +++++++++---
build/vignette.rds |binary
data/coalash.rda |binary
data/fulmar.rda |binary
data/jura.rda |binary
data/meuse.all.rda |binary
data/meuse.alt.rda |binary
data/ncp.grid.rda |binary
data/oxford.rda |binary
data/pcb.rda |binary
data/sic2004.rda |binary
data/sic97.rda |binary
data/tull.rda |binary
data/vv.rda |binary
data/walker.rda |binary
data/wind.rda |binary
demo/a2p.R | 5 -
demo/stkrige.R | 52 +++++++++----
demo/wind.R | 8 +-
inst/ChangeLog | 77 +++++++++++++++++++
inst/doc/gstat.pdf |binary
inst/doc/prs.pdf |binary
inst/doc/st.pdf |binary
man/estiStAni.Rd |only
man/extractPar.Rd |only
man/fit.StVariogram.Rd | 35 +++++++-
man/gstat.Rd | 10 +-
man/meuse.all.Rd | 2
man/meuse.alt.Rd | 2
man/ossfim.Rd | 3
man/pcb.Rd | 2
man/plot.gstatVariogram.Rd | 8 +-
man/sic2004.Rd | 10 --
man/sic97.Rd | 4 -
man/variogram.Rd | 7 -
man/variogramST.Rd | 14 +--
man/vgmST.Rd | 2
man/wind.Rd | 5 -
src/defs.h | 2
src/s.c | 7 +
tests/unproj.R | 9 +-
tests/unproj.Rout.save | 15 ++-
tests/windst.R | 8 +-
tests/windst.Rout.save | 14 +--
54 files changed, 485 insertions(+), 191 deletions(-)
Title: Sparse Group Partial Least Square Methods
Diff between sgPLS versions 1.0 dated 2015-02-10 and 1.1 dated 2015-03-14
Description: The Sparse Group Partial Least Square package (sgPLS) provides sparse, group, and sparse group versions of partial least square regression models.
Author: Benoit Liquet and Pierre Lafaye de Micheaux
Maintainer: Benoit Liquet
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/per.variance.R | 2 +-
R/tuning.gPLS.X.R | 2 +-
R/tuning.sPLS.X.R | 2 +-
R/tuning.sgPLS.X.R | 2 +-
man/gPLS.Rd | 2 +-
man/predict.Rd | 2 +-
man/sPLS.Rd | 2 +-
man/sgPLS.Rd | 2 +-
10 files changed, 21 insertions(+), 21 deletions(-)
Title: Analysis of Symbolic Data
Diff between symbolicDA versions 0.4-1 dated 2013-10-12 and 0.4-2 dated 2015-03-14
Description: Symbolic data analysis methods: importing/ exporting data from ASSO XML Files, distance calculation for symbolic data (Ichino-Yaguchi, de Carvalho measure), zoom star plot, 3d interval plot, multidimensional scaling for symbolic interval data, dynamic clustering based on distance matrix, HINoV method for symbolic data, Ichino's feature selection method, principal component analysis for symbolic interval data, decision trees for symbolic data based on optimal split with bagging, boosting and random forest approach (+visualization), kernel discriminant analysis for symbolic data, Kohonen's self-organizing maps for symbolic, replication and profiling, artificial symbolic data generation.
Author: Andrzej Dudek, Marcin Pelka
Maintainer: Andrzej Dudek
symbolicDA-0.4-1/symbolicDA/R/Iscal.SDA.r |only
symbolicDA-0.4-1/symbolicDA/R/SO2Simple.r |only
symbolicDA-0.4-1/symbolicDA/R/interscal.SDA.r |only
symbolicDA-0.4-1/symbolicDA/R/simple2SO.r |only
symbolicDA-0.4-1/symbolicDA/R/symscal.SDA.r |only
symbolicDA-0.4-1/symbolicDA/man/summary.symbolic.rd |only
symbolicDA-0.4-1/symbolicDA/tests/DClust.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/HINoV.SDA.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/SClust.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/cars.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/cluster.Description.SDA.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/dist.SDA.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/index.G1d.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/plot3dInterval.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/replication.SDA.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/save.SO.Rout.save |only
symbolicDA-0.4-1/symbolicDA/tests/zoomStar.Rout.save |only
symbolicDA-0.4-2/symbolicDA/DESCRIPTION | 16 +-
symbolicDA-0.4-2/symbolicDA/MD5 | 54 +++++-----
symbolicDA-0.4-2/symbolicDA/NAMESPACE | 1
symbolicDA-0.4-2/symbolicDA/R/Interscal.SDA.r |only
symbolicDA-0.4-2/symbolicDA/R/Iscal.SDA.R |only
symbolicDA-0.4-2/symbolicDA/R/SO2Simple.R |only
symbolicDA-0.4-2/symbolicDA/R/Symscal.SDA.R |only
symbolicDA-0.4-2/symbolicDA/R/generate.SO.r | 2
symbolicDA-0.4-2/symbolicDA/R/replication.SDA.r | 3
symbolicDA-0.4-2/symbolicDA/R/simple2SO.R |only
symbolicDA-0.4-2/symbolicDA/data/data_symbolic.rda |only
symbolicDA-0.4-2/symbolicDA/inst/doc/SDA.pdf |only
symbolicDA-0.4-2/symbolicDA/inst/pdf |only
symbolicDA-0.4-2/symbolicDA/man/data_symbolic.rd |only
symbolicDA-0.4-2/symbolicDA/man/parse.SO.rd | 2
symbolicDA-0.4-2/symbolicDA/man/symbolic.object.rd | 2
symbolicDA-0.4-2/symbolicDA/src |only
symbolicDA-0.4-2/symbolicDA/tests/DClust.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/HINoV.SDA.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/SClust.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/cars.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/cluster.Description.SDA.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/dist.SDA.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/index.G1d.R | 2
symbolicDA-0.4-2/symbolicDA/tests/index.G1d.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/plot3dInterval.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/replication.SDA.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/save.SO.Rout |only
symbolicDA-0.4-2/symbolicDA/tests/zoomStar.Rout |only
46 files changed, 43 insertions(+), 39 deletions(-)
Title: Diverse Basic Statistical and Graphical Functions
Diff between RVAideMemoire versions 0.9-41 dated 2014-11-15 and 0.9-45-2 dated 2015-03-14
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
RVAideMemoire-0.9-41/RVAideMemoire/man/friedman.rating.test.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/kruskal.rating.test.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/pairwise.manova.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/pairwise.wilcox.rating.test.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/wilcox.paired.rating.multcomp.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/wilcox.rating.signtest.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/wilcox.rating.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/DESCRIPTION | 16
RVAideMemoire-0.9-45-2/RVAideMemoire/MD5 | 243 +++++-----
RVAideMemoire-0.9-45-2/RVAideMemoire/NAMESPACE | 48 +
RVAideMemoire-0.9-45-2/RVAideMemoire/NEWS | 31 +
RVAideMemoire-0.9-45-2/RVAideMemoire/R/CvM.test.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/DA.confusion.R | 63 +-
RVAideMemoire-0.9-45-2/RVAideMemoire/R/DA.valid.R | 92 +++
RVAideMemoire-0.9-45-2/RVAideMemoire/R/G.bintest.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/G.multcomp.R | 6
RVAideMemoire-0.9-45-2/RVAideMemoire/R/G.test.R | 5
RVAideMemoire-0.9-45-2/RVAideMemoire/R/MVA.synt.R | 7
RVAideMemoire-0.9-45-2/RVAideMemoire/R/PLSDA.ncomp.R | 9
RVAideMemoire-0.9-45-2/RVAideMemoire/R/PLSDA.test.R | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/R/adonis.II.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/back.lsmeans.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/chisq.bin.exp.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/chisq.bintest.R | 35 -
RVAideMemoire-0.9-45-2/RVAideMemoire/R/chisq.theo.bintest.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/cor.2comp.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/R/cramer.test.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/R/dendro.gp.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/R/dhist.R | 3
RVAideMemoire-0.9-45-2/RVAideMemoire/R/fisher.bintest.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/fisher.multcomp.R | 37 +
RVAideMemoire-0.9-45-2/RVAideMemoire/R/fp.test.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/friedman.rating.test.R | 34 -
RVAideMemoire-0.9-45-2/RVAideMemoire/R/ind.contrib.R | 8
RVAideMemoire-0.9-45-2/RVAideMemoire/R/kruskal.rating.test.R | 33 -
RVAideMemoire-0.9-45-2/RVAideMemoire/R/mood.medtest.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/multinomial.multcomp.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/multinomial.test.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/multinomial.theo.multcomp.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pairwise.manova.R | 20
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pairwise.mood.medtest.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pairwise.perm.manova.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pairwise.to.groups.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pairwise.wilcox.rating.test.R | 23
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pcor.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/pcor.test.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/perm.t.test.R | 19
RVAideMemoire-0.9-45-2/RVAideMemoire/R/perm.var.test.R | 18
RVAideMemoire-0.9-45-2/RVAideMemoire/R/plot1comp.var.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/R/plotresid.R | 6
RVAideMemoire-0.9-45-2/RVAideMemoire/R/predict.coadisc.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/print.RV.multcomp.R | 3
RVAideMemoire-0.9-45-2/RVAideMemoire/R/prop.bin.multcomp.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/prop.multinom.test.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/s.corcircle2.R | 35 +
RVAideMemoire-0.9-45-2/RVAideMemoire/R/scat.cr.R |only
RVAideMemoire-0.9-45-2/RVAideMemoire/R/scat.mix.categorical.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/R/wald.ptheo.test.R | 9
RVAideMemoire-0.9-45-2/RVAideMemoire/R/wilcox.paired.rating.multcomp.R | 32 -
RVAideMemoire-0.9-45-2/RVAideMemoire/R/wilcox.rating.signtest.R | 53 --
RVAideMemoire-0.9-45-2/RVAideMemoire/R/wilcox.rating.test.R | 69 --
RVAideMemoire-0.9-45-2/RVAideMemoire/R/wilcox.signtest.R | 96 ++-
RVAideMemoire-0.9-45-2/RVAideMemoire/R/zzz.R | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/CvM.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/DA.confusion.Rd | 22
RVAideMemoire-0.9-45-2/RVAideMemoire/man/DA.valid.Rd | 29 -
RVAideMemoire-0.9-45-2/RVAideMemoire/man/G.bintest.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/G.multcomp.Rd | 9
RVAideMemoire-0.9-45-2/RVAideMemoire/man/G.test.Rd | 14
RVAideMemoire-0.9-45-2/RVAideMemoire/man/G.theo.multcomp.Rd | 11
RVAideMemoire-0.9-45-2/RVAideMemoire/man/LDA.format.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/MVA.synt.Rd | 10
RVAideMemoire-0.9-45-2/RVAideMemoire/man/PLSDA.VIP.Rd | 3
RVAideMemoire-0.9-45-2/RVAideMemoire/man/PLSDA.ncomp.Rd | 3
RVAideMemoire-0.9-45-2/RVAideMemoire/man/PLSDA.test.Rd | 5
RVAideMemoire-0.9-45-2/RVAideMemoire/man/RVAideMemoire-package.Rd | 8
RVAideMemoire-0.9-45-2/RVAideMemoire/man/adonis.II.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/back.lsmeans.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/byf.hist.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/byf.mqqnorm.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/byf.mshapiro.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/byf.qqnorm.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/byf.shapiro.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.bin.exp.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.bintest.Rd | 20
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.exp.Rd | 8
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.multcomp.Rd | 9
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.theo.bintest.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/chisq.theo.multcomp.Rd | 11
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cochran.qtest.Rd | 5
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cor.2comp.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cor.conf.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cor.multcomp.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cor.sparse.Rd | 5
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cox.resid.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cramer.test.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/cv.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/dendro.gp.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/deprecated.Rd | 18
RVAideMemoire-0.9-45-2/RVAideMemoire/man/fisher.bintest.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/fisher.multcomp.Rd | 22
RVAideMemoire-0.9-45-2/RVAideMemoire/man/fp.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/ind.contrib.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/least.rect.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/logis.fit.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/logis.noise.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/mod.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/mood.medtest.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/mqqnorm.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/multinomial.multcomp.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/multinomial.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/multinomial.theo.multcomp.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/overdisp.glmer.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pairwise.G.test.Rd | 9
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pairwise.mood.medtest.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pairwise.perm.manova.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pairwise.perm.t.test.Rd | 5
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pairwise.to.groups.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pcor.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/pcor.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/perm.anova.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/perm.bartlett.test.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/perm.cor.test.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/perm.t.test.Rd | 30 -
RVAideMemoire-0.9-45-2/RVAideMemoire/man/perm.var.test.Rd | 29 -
RVAideMemoire-0.9-45-2/RVAideMemoire/man/plot1comp.ind.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/plot1comp.var.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/plotresid.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/plotsurvivors.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/predict.coadisc.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/prop.bin.multcomp.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/prop.multcomp.Rd | 10
RVAideMemoire-0.9-45-2/RVAideMemoire/man/prop.multinom.test.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/rating.lsmeans.Rd | 8
RVAideMemoire-0.9-45-2/RVAideMemoire/man/rating.prob.Rd | 3
RVAideMemoire-0.9-45-2/RVAideMemoire/man/reg.ci.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/s.corcircle2.Rd | 19
RVAideMemoire-0.9-45-2/RVAideMemoire/man/scat.cr.Rd |only
RVAideMemoire-0.9-45-2/RVAideMemoire/man/scat.mix.categorical.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/scat.mix.numeric.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/se.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/seq2.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/spearman.ci.Rd | 4
RVAideMemoire-0.9-45-2/RVAideMemoire/man/user.cont.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/wald.ptheo.test.Rd | 10
RVAideMemoire-0.9-45-2/RVAideMemoire/man/wilcox.paired.multcomp.Rd | 2
RVAideMemoire-0.9-45-2/RVAideMemoire/man/wilcox.signtest.Rd | 44 +
147 files changed, 842 insertions(+), 694 deletions(-)
Title: R Interface to REDCap
Diff between redcapAPI versions 1.2 dated 2015-01-16 and 1.3 dated 2015-03-14
Description: Access data stored in REDCap databases using the Application
Programming Interface (API). REDCap (Research Electronic Data CAPture) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The redcapAPI package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with
contributions from Jeremy Stephens, and Will Beasley
Maintainer: Stephen Lane
DESCRIPTION | 12 +--
MD5 | 88 ++++++++++++-----------
NAMESPACE | 63 ++++++++---------
NEWS | 10 ++
R/allocationTable.R | 6 -
R/deleteFiles.R | 6 -
R/exportArms.R | 7 +
R/exportEvents.R | 7 +
R/exportFiles.R | 4 -
R/exportInstruments.R | 4 -
R/exportMappings.R | 8 +-
R/exportMetaData.R | 4 -
R/exportRecords.R | 13 ++-
R/exportReports.R | 4 -
R/exportUsers.R | 82 +++++++++++-----------
R/exportVersion.R | 30 ++++----
R/importFiles.R | 4 -
R/importRecords.R | 158 +++++++++++++++++++++----------------------
R/parseBranchingLogic.R |only
R/redcapProjectInfo.R | 4 -
README.md | 5 +
inst/CITATION | 2
man/allocationTable.Rd | 3
man/apiCall.Rd | 3
man/deleteFiles.Rd | 3
man/exportArms.Rd | 3
man/exportEvents.Rd | 3
man/exportFiles.Rd | 3
man/exportInstruments.Rd | 3
man/exportMappings.Rd | 3
man/exportMetaData.Rd | 3
man/exportRecords.Rd | 3
man/exportReports.Rd | 3
man/exportUsers.Rd | 5 -
man/exportVersion.Rd | 5 -
man/fieldToVar.Rd | 3
man/importFiles.Rd | 3
man/importRecords.Rd | 5 -
man/parseBranchingLogic.Rd |only
man/recodeCheck.Rd | 3
man/redcapAPI.Rd | 3
man/redcapConnection.Rd | 3
man/redcapFactorFlip.Rd | 3
man/redcapProjectInfo.Rd | 3
man/syncUnderscoreCodings.Rd | 3
man/validateImport.Rd | 3
46 files changed, 322 insertions(+), 274 deletions(-)
Title: Geographic Data Analysis and Modeling
Diff between raster versions 2.3-24 dated 2015-01-27 and 2.3-33 dated 2015-03-14
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Matteo Mattiuzzi [ctb],
Michael Sumner [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Etienne B. Racine [ctb],
Ashton Shortridge [ctb]
Maintainer: Robert J. Hijmans
ChangeLog | 7 ++-
DESCRIPTION | 16 ++++----
MD5 | 89 ++++++++++++++++++++++++------------------------
R/aggregate_sp.R | 8 ++--
R/area.R | 10 ++---
R/as.data.frame.R | 2 -
R/as.spatial.R | 4 +-
R/bind.R | 12 ++++++
R/cellStats.R | 4 +-
R/clusterR.R | 24 ++++++------
R/distanceToEdge.R |only
R/extractLines.R | 8 ++--
R/extractPolygons.R | 22 +++++------
R/focalFun.R | 4 +-
R/getData.R | 2 -
R/hdrPRJ.R | 18 +++++----
R/imageplot2.R | 28 ++++++++++++---
R/multiCore.R | 17 +++++----
R/netCDFtoRasterCD.R | 14 +++++--
R/overlay.R | 5 ++
R/plot.R | 40 +++++++++++++--------
R/plotRaster2.R | 9 +++-
R/projectRaster.R | 14 +++----
R/rasterFromFile.R | 2 -
R/rasterFromGDAL.R | 20 ++++++++++
R/resample.R | 12 +++---
R/shift.R | 19 ++++++++--
R/shp.R | 2 -
R/terrain.R | 4 +-
R/union_sp.R | 5 +-
R/writeAllAscii.R | 13 +++++--
R/writeStartStop.R | 23 +++++++++++-
R/writeStartStopAscii.R | 2 +
R/xyValuesBuffer.R | 8 ++--
build/vignette.rds |binary
inst/doc/Raster.pdf |binary
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
man/bind.Rd | 1
man/cluster.Rd | 2 +
man/plot.Rd | 4 +-
man/shapefile.Rd | 12 ++++++
man/terrain.Rd | 10 +----
man/writeRaster.Rd | 3 +
man/writeValues.Rd | 4 +-
src/terrain.c | 57 +++++++++++++++---------------
46 files changed, 351 insertions(+), 209 deletions(-)
Title: Analyzing Pointer Years and Components of Resilience
Diff between pointRes versions 1.0.1 dated 2015-03-06 and 1.0.2 dated 2015-03-14
Description: Functions to calculate and plot event and pointer years as well as components of resilience. Designed for dendroecological applications, but also suitable to analyze patterns in other ecological time series.
Author: Marieke van der Maaten-Theunissen and Ernst van der Maaten
Maintainer: Marieke van der Maaten-Theunissen
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
R/event.plot.R | 6 +++---
R/norm.plot.R | 8 ++++----
R/pointer.norm.R | 25 +++++++++++++------------
R/pointer.plot.R | 10 +++++-----
R/pointer.rgc.R | 2 +-
R/res.comp.R | 2 +-
inst/Changelog | 20 ++++++++++++--------
man/event.plot.Rd | 6 +++---
man/norm.plot.Rd | 8 ++++----
man/pointer.norm.Rd | 19 +++++++++----------
man/pointer.plot.Rd | 10 +++++-----
man/pointer.rgc.Rd | 2 +-
man/res.comp.Rd | 2 +-
15 files changed, 80 insertions(+), 76 deletions(-)
Title: Number-Theoretic Functions
Diff between numbers versions 0.5-2 dated 2015-01-28 and 0.5-6 dated 2015-03-14
Description:
Provides some number-theoretic functions for R.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers
DESCRIPTION | 14 +++++++-------
MD5 | 16 ++++++++--------
NAMESPACE | 4 ++--
NEWS | 11 +++++++++++
R/droplet.R | 47 ++++++++++++++++++++++++++++++++++++++++++++++-
R/factorize.R | 6 ++++++
man/droplet_e.Rd | 35 ++++++++++++++++++++++++++---------
man/factorize.Rd | 35 ++++++++++++++++++++++++++++++++---
man/numbers-package.Rd | 2 +-
9 files changed, 139 insertions(+), 31 deletions(-)
Title: Programmatic Interface to the API Serving UC Berkeley's Natural
History Data
Diff between ecoengine versions 1.6 dated 2014-08-26 and 1.9 dated 2015-03-14
Description: The ecoengine provides access to more than 5 million georeferenced specimen records from the University of California, Berkeley's Natural History Museums.
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram
ecoengine-1.6/ecoengine/inst/cache/fields_238cc4997a161669b1d7717ac8efc701.RData |only
ecoengine-1.6/ecoengine/inst/cache/fields_238cc4997a161669b1d7717ac8efc701.rdb |only
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ecoengine-1.6/ecoengine/inst/cache/version_c54e79368c8b2944c7d408eff6517323.rdb |only
ecoengine-1.6/ecoengine/inst/cache/version_c54e79368c8b2944c7d408eff6517323.rdx |only
ecoengine-1.9/ecoengine/DESCRIPTION | 16
ecoengine-1.9/ecoengine/MD5 | 323 +-
ecoengine-1.9/ecoengine/NAMESPACE | 2
ecoengine-1.9/ecoengine/NEWS | 6
ecoengine-1.9/ecoengine/R/ee_about.R | 2
ecoengine-1.9/ecoengine/R/ee_observations.R | 8
ecoengine-1.9/ecoengine/README.md | 10
ecoengine-1.9/ecoengine/inst/Using_ecoengine.Rmd | 25
ecoengine-1.9/ecoengine/inst/Using_ecoengine.md | 290 +-
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ecoengine-1.9/ecoengine/inst/Using_ecoengine_cache |only
ecoengine-1.9/ecoengine/inst/cache/__packages | 10
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148 files changed, 19242 insertions(+), 19090 deletions(-)
Title: Searching for Optimal Clustering Procedure for a Data Set
Diff between clusterSim versions 0.44-1 dated 2014-12-09 and 0.44-2 dated 2015-03-14
Description: Distance measures (GDM1, GDM2, Sokal-Michener, Bray-Curtis, for symbolic interval-valued data), cluster quality indices (Calinski-Harabasz, Baker-Hubert, Hubert-Levine, Silhouette, Krzanowski-Lai, Hartigan, Gap, Davies-Bouldin), data normalization formulas, data generation (typical and non-typical data), HINoV method, replication analysis, linear ordering methods, spectral clustering, agreement indices between two partitions, plot functions (for categorial and symbolic interval-valued data).
Author: Marek Walesiak
Maintainer: Andrzej Dudek
DESCRIPTION | 34 +++++------------------------
MD5 | 50 +++++++++++++++++++++++++++++++-------------
inst/pdf |only
man/cluster.Gen.rd | 4 +--
man/comparing.Partitions.rd | 2 -
man/data.Normalization.rd | 2 -
man/dist.BC.rd | 2 -
man/dist.GDM.rd | 2 -
man/dist.SM.rd | 2 -
man/dist.Symbolic.rd | 2 -
man/index.G2.rd | 2 -
man/index.G3.rd | 2 -
man/index.H.rd | 2 -
man/index.KL.rd | 34 +++++++++++++++++++----------
man/index.S.rd | 2 -
man/ordinalToMetric.rd | 5 ++--
16 files changed, 79 insertions(+), 68 deletions(-)