Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Diff between gmm versions 1.5-1 dated 2015-02-09 and 1.5-2 dated 2015-03-17
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Author: Pierre Chausse
Maintainer: Pierre Chausse
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NEWS | 4 ++++
R/momentEstim.R | 14 ++++++++++++++
inst/doc/gmm_with_R.pdf |binary
5 files changed, 27 insertions(+), 9 deletions(-)
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Diff between checkpoint versions 0.3.3 dated 2014-10-10 and 0.3.9 dated 2015-03-17
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install
packages as they existed on CRAN on a specific snapshot date as if you had
a CRAN time machine. To achieve reproducibility, the checkpoint() function
installs the packages required or called by your project and scripts to a
local library exactly as they existed at the specified point in time. Only
those packages are available to your project, thereby avoiding any package
updates that came later and may have altered your results. In this way,
anyone using checkpoint's checkpoint() can ensure the reproducibility of
your scripts or projects at any time. To create the snapshot archives, once
a day (at midnight UTC) we refresh the Austria CRAN mirror, on the "Managed
R Archived Network" server (http://mran.revolutionanalytics.com/).
Immediately after completion of the rsync mirror process, we take a
snapshot, thus creating the archive. Snapshot archives exist starting from
2014-09-17.
Author: Revolution Analytics
Maintainer: Andrie de Vries
checkpoint-0.3.3/checkpoint/tests/testthat/test-1-checkpoint.R |only
checkpoint-0.3.9/checkpoint/DESCRIPTION | 15
checkpoint-0.3.9/checkpoint/MD5 | 29 +
checkpoint-0.3.9/checkpoint/NAMESPACE | 4
checkpoint-0.3.9/checkpoint/R/checkpoint.R | 146 ++++++-
checkpoint-0.3.9/checkpoint/R/checkpoint_paths.R | 42 +-
checkpoint-0.3.9/checkpoint/R/detach.R |only
checkpoint-0.3.9/checkpoint/R/fixRstudioBug.R |only
checkpoint-0.3.9/checkpoint/R/installMissingBasePackages.R |only
checkpoint-0.3.9/checkpoint/R/scanRepoPackages.R | 183 ++++++----
checkpoint-0.3.9/checkpoint/R/test-common-functions.R | 2
checkpoint-0.3.9/checkpoint/build |only
checkpoint-0.3.9/checkpoint/inst/doc |only
checkpoint-0.3.9/checkpoint/man/checkpoint-package.Rd | 3
checkpoint-0.3.9/checkpoint/man/checkpoint.Rd | 21 -
checkpoint-0.3.9/checkpoint/tests/testthat/test-1-scan.R |only
checkpoint-0.3.9/checkpoint/tests/testthat/test-2-checkpoint.R |only
checkpoint-0.3.9/checkpoint/vignettes |only
18 files changed, 317 insertions(+), 128 deletions(-)
Title: R Interface to Global Biotic Interactions
Diff between rglobi versions 0.2.5 dated 2015-02-24 and 0.2.6 dated 2015-03-17
Description: A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI). GloBI provides
access to spatial-temporal species interaction records from
sources all over the world. rglobi provides methods to search
species interactions by location, interaction type, and
taxonomic name. In addition, it supports Cypher, a graph query
language, to allow for executing custom queries on the GloBI
aggregate species interaction dataset.
Author: Jorrit Poelen [aut, cre],
Stephen Gosnell [aut],
Sergey Slyusarev [aut]
Maintainer: Jorrit Poelen
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
build/vignette.rds |binary
tests/testthat/test-globi.R | 2 +-
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Diff between NSM3 versions 1.1 dated 2013-11-12 and 1.2 dated 2015-03-17
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider
DESCRIPTION | 14 +--
MD5 | 8 -
R/theil.R | 274 ++++++++++++++++++++++++-----------------------------------
man/pKW.Rd | 2
man/theil.Rd | 4
5 files changed, 130 insertions(+), 172 deletions(-)
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Diff between mvMORPH versions 1.0.2 dated 2014-04-24 and 1.0.3 dated 2015-03-17
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees.
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Maintainer: Julien Clavel
mvMORPH-1.0.2/mvMORPH/R/mvOUC.r |only
mvMORPH-1.0.2/mvMORPH/man/mvSHIFT.rd |only
mvMORPH-1.0.2/mvMORPH/src/ouch.h |only
mvMORPH-1.0.3/mvMORPH/DESCRIPTION | 12
mvMORPH-1.0.3/mvMORPH/MD5 | 55 -
mvMORPH-1.0.3/mvMORPH/NAMESPACE | 18
mvMORPH-1.0.3/mvMORPH/R/fun.r | 533 ++++++++-
mvMORPH-1.0.3/mvMORPH/R/mvBM.r | 1071 ++++++++++----------
mvMORPH-1.0.3/mvMORPH/R/mvEB.r | 455 ++++----
mvMORPH-1.0.3/mvMORPH/R/mvLLIK.r |only
mvMORPH-1.0.3/mvMORPH/R/mvOU.r |only
mvMORPH-1.0.3/mvMORPH/R/mvSHIFT.r | 637 ++++++++---
mvMORPH-1.0.3/mvMORPH/R/mvSIM.r |only
mvMORPH-1.0.3/mvMORPH/R/mvmorphPrecalc.r |only
mvMORPH-1.0.3/mvMORPH/R/testLRT.r |only
mvMORPH-1.0.3/mvMORPH/man/LRT.Rd |only
mvMORPH-1.0.3/mvMORPH/man/mv.Precalc.Rd |only
mvMORPH-1.0.3/mvMORPH/man/mvBM.Rd | 399 ++++---
mvMORPH-1.0.3/mvMORPH/man/mvEB.Rd | 303 +++--
mvMORPH-1.0.3/mvMORPH/man/mvLL.Rd |only
mvMORPH-1.0.3/mvMORPH/man/mvMORPH-package.Rd | 97 -
mvMORPH-1.0.3/mvMORPH/man/mvOU.Rd | 405 ++++---
mvMORPH-1.0.3/mvMORPH/man/mvSHIFT.Rd |only
mvMORPH-1.0.3/mvMORPH/man/mvSIM.Rd |only
mvMORPH-1.0.3/mvMORPH/src/Makevars |only
mvMORPH-1.0.3/mvMORPH/src/chol_rpf_row.c |only
mvMORPH-1.0.3/mvMORPH/src/chol_rpf_univ.c |only
mvMORPH-1.0.3/mvMORPH/src/covar-matrix-simmap.c | 2
mvMORPH-1.0.3/mvMORPH/src/givens.c |only
mvMORPH-1.0.3/mvMORPH/src/kronecker.c |only
mvMORPH-1.0.3/mvMORPH/src/mvmorph-covar-mat.c | 102 +
mvMORPH-1.0.3/mvMORPH/src/mvmorph-covar-ou-sparse.c |only
mvMORPH-1.0.3/mvMORPH/src/mvmorph-covar-ou.c | 17
mvMORPH-1.0.3/mvMORPH/src/mvmorph.h |only
mvMORPH-1.0.3/mvMORPH/src/mvmorph_ou_mat_rpf.c |only
mvMORPH-1.0.3/mvMORPH/src/pic_loglik_mvmorph.c |only
mvMORPH-1.0.3/mvMORPH/src/quadprod.c |only
mvMORPH-1.0.3/mvMORPH/src/root2tip.c | 3
mvMORPH-1.0.3/mvMORPH/src/time_root_mvmorph.c |only
mvMORPH-1.0.3/mvMORPH/src/weight-matrix-mvmorph.c |only
mvMORPH-1.0.3/mvMORPH/src/weight-matrix-simmap.c | 4
41 files changed, 2479 insertions(+), 1634 deletions(-)
Title: Histogram-Valued Data Analysis
Diff between HistDAWass versions 0.1.1 dated 2015-02-24 and 0.1.2 dated 2015-03-17
Description: In the framework of Symbolic Data Analysis, a relatively new approach
to the statistical analysis of multi-valued data, we consider histogram-valued data, i.e.,
data described by univariate histograms. The methods and the basic statistics for
histogram-valued data are mainly based
on the L2 Wasserstein metric between distributions, i.e., a Euclidean metric
between quantile functions. The package contains unsupervised classification techniques,
least square regression and tools for histogram-valued data and for histogram time series.
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino
DESCRIPTION | 14 +--
MD5 | 55 +++++++----
NAMESPACE | 12 ++
R/HistDAWass-package.R | 1
R/Met_HTS.R | 106 +++++++++++++++++++++--
R/Met_MatH.R | 184 +++++++++++-----------------------------
R/Met_distributionH.R | 106 ++---------------------
R/Plotting_with_ggplot.R |only
R/Utility.R | 159 ++++++++++++++++++++++++++++++++++
R/principal_components.R | 1
R/regression.R | 75 ++++++++++++++--
R/unsuperv_classification.R | 5 +
README.md |only
man/Center.cell.MatH-methods.Rd |only
man/DouglasPeucker.Rd |only
man/ShortestDistance.Rd |only
man/WH.regression.GOF.Rd |only
man/WH_hclust.Rd | 7 +
man/crwtransform-methods.Rd | 4
man/data2hist.Rd |only
man/extract-methods.Rd | 9 +
man/get.distr-methods.Rd | 4
man/get.histo-methods.Rd | 4
man/get.m-methods.Rd | 4
man/get.s-methods.Rd | 4
man/kurtH-methods.Rd | 4
man/meanH-methods.Rd | 4
man/plot-HTS.Rd |only
man/plot-MatH.Rd | 9 -
man/plotPredVsObs.Rd |only
man/plot_errors.Rd |only
man/skewH-methods.Rd | 4
man/stdH-methods.Rd | 4
man/subsetHTS-methods.Rd |only
34 files changed, 479 insertions(+), 300 deletions(-)
More information about EntropyExplorer at CRAN
Permanent link
Title: Bayesian Analysis of Contingency Tables
Diff between conting versions 1.4 dated 2014-12-03 and 1.5 dated 2015-03-17
Description: Bayesian analysis of complete and incomplete contingency tables.
Author: Antony M. Overstall
Maintainer: Antony M. Overstall
DESCRIPTION | 10 +++++-----
MD5 | 14 +++++++-------
NAMESPACE | 15 +++++++++++++++
data/AOH.rda |binary
data/ScotPWID.rda |binary
data/heart.rda |binary
data/spina.rda |binary
man/conting-package.Rd | 8 ++++----
8 files changed, 31 insertions(+), 16 deletions(-)
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Diff between vcrpart versions 0.3-2 dated 2015-02-11 and 0.3-3 dated 2015-03-17
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin
DESCRIPTION | 8 +--
MD5 | 22 ++++-----
NEWS | 21 ++++++++
R/fvcm.R | 76 ++++++++++++++++++++-----------
R/olmm-methods.R | 10 ++--
R/tvcm-cv.R | 11 ++--
R/tvcm-utils.R | 124 +++++++++++++++++++++++-----------------------------
R/tvcm.R | 53 +++++++++++++---------
man/fvcm.Rd | 56 +++++++++--------------
man/olmm-gefp.Rd | 7 ++
man/tvcm-control.Rd | 4 -
man/tvcm-cv.Rd | 2
12 files changed, 218 insertions(+), 176 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Diff between spdep versions 0.5-87 dated 2015-03-16 and 0.5-88 dated 2015-03-17
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial autocorrelation,
including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross
product statistic, Empirical Bayes estimates and Assunção/Reis Index,
Getis/Ord G and multicoloured join count statistics, local Moran's I
and Getis/Ord G, saddlepoint approximations and exact tests for global
and local Moran's I; and functions for estimating spatial simultaneous
autoregressive (SAR) lag and error models, impact measures for lag
models, weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut],
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand
spdep-0.5-87/spdep/inst/copyright.diff |only
spdep-0.5-88/spdep/DESCRIPTION | 8 ++--
spdep-0.5-88/spdep/MD5 | 25 +++++++--------
spdep-0.5-88/spdep/R/lextrW.R | 4 +-
spdep-0.5-88/spdep/inst/doc/CO69.pdf |binary
spdep-0.5-88/spdep/inst/doc/SpatialFiltering.pdf |binary
spdep-0.5-88/spdep/inst/doc/nb.pdf |binary
spdep-0.5-88/spdep/inst/doc/nb_igraph.R | 12 ++++---
spdep-0.5-88/spdep/inst/doc/nb_igraph.Rmd | 12 ++++---
spdep-0.5-88/spdep/inst/doc/nb_igraph.html | 32 ++++++++++++++++---
spdep-0.5-88/spdep/inst/doc/sids.pdf |binary
spdep-0.5-88/spdep/man/eigenw.Rd | 12 +++++--
spdep-0.5-88/spdep/man/lextrB.Rd | 37 +++++++++++++++++++----
spdep-0.5-88/spdep/vignettes/nb_igraph.Rmd | 12 ++++---
14 files changed, 109 insertions(+), 45 deletions(-)
Title: Tools, Classes, and Methods for Interfacing with SaTScan
Stand-Alone Software
Diff between rsatscan versions 0.3.9122 dated 2015-02-08 and 0.3.9200 dated 2015-03-17
Description: SaTScan(TM) (http://www.satscan.org) is software for finding regions in
Time, Space, or Time-Space that have excess risk, based on scan statistics, and
uses Monte Carlo hypothesis testing to generate P-values for these regions. The
rsatscan package provides functions for writing R data frames in
SaTScan-readable formats, for setting SaTScan parameters, for running SaTScan in
the OS, and for reading the files that SaTScan creates.
Author: Ken Kleinman [aut, cre]
Maintainer: Ken Kleinman
rsatscan-0.3.9122/rsatscan/R/methods.r |only
rsatscan-0.3.9200/rsatscan/DESCRIPTION | 8 +--
rsatscan-0.3.9200/rsatscan/MD5 | 34 ++++++-------
rsatscan-0.3.9200/rsatscan/NEWS | 10 +++-
rsatscan-0.3.9200/rsatscan/R/methods.R |only
rsatscan-0.3.9200/rsatscan/R/satscan.R | 4 -
rsatscan-0.3.9200/rsatscan/R/zzz.R | 3 -
rsatscan-0.3.9200/rsatscan/README.md | 13 ++---
rsatscan-0.3.9200/rsatscan/inst/doc/rsatscan.R | 44 ++++++++---------
rsatscan-0.3.9200/rsatscan/inst/doc/rsatscan.Rmd | 50 ++++++++++----------
rsatscan-0.3.9200/rsatscan/inst/doc/rsatscan.html | 35 +++++++-------
rsatscan-0.3.9200/rsatscan/inst/doc/simulation.R | 10 ++--
rsatscan-0.3.9200/rsatscan/inst/doc/simulation.Rmd | 12 ++--
rsatscan-0.3.9200/rsatscan/inst/doc/simulation.html | 6 +-
rsatscan-0.3.9200/rsatscan/man/print.satscan.Rd | 2
rsatscan-0.3.9200/rsatscan/man/satscan.Rd | 2
rsatscan-0.3.9200/rsatscan/man/summary.satscan.Rd | 2
rsatscan-0.3.9200/rsatscan/vignettes/rsatscan.Rmd | 50 ++++++++++----------
rsatscan-0.3.9200/rsatscan/vignettes/simulation.Rmd | 12 ++--
19 files changed, 154 insertions(+), 143 deletions(-)
Title: Calculation of Rarity Indices for Species and Assemblages of
Species
Diff between Rarity versions 1.2-1 dated 2013-08-12 and 1.3-1 dated 2015-03-17
Description: Allows calculation of rarity weights for species and indices of rarity for assemblages of species according to different methods (Leroy et al. 2012, 2013).
Author: Boris Leroy
Maintainer: Boris Leroy
DESCRIPTION | 14 +-
MD5 | 20 ++-
NAMESPACE | 9 -
R/Rarity.R |only
R/rarity_indices.R | 265 ++------------------------------------------------
R/rarity_weights.R | 40 ++++++-
R/summed_rarity.R |only
README.md |only
man/Irr.Rd | 35 +++---
man/Isr.Rd |only
man/Rarity-package.Rd | 7 -
man/rWeights.Rd | 29 +++--
man/spid.occ.Rd | 2
13 files changed, 113 insertions(+), 308 deletions(-)
Title: An Implementation of the Grammar of Graphics
Diff between ggplot2 versions 1.0.0 dated 2014-05-21 and 1.0.1 dated 2015-03-17
Description: An implementation of the grammar of graphics
in R. It combines the advantages of both base and
lattice graphics: conditioning and shared axes are
handled automatically, and you can still build up a
plot step by step from multiple data sources. It also
implements a sophisticated multidimensional
conditioning system and a consistent interface to map
data to aesthetic attributes. See http://ggplot2.org
for more information, documentation and examples.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut]
Maintainer: Hadley Wickham
DESCRIPTION | 19 +
MD5 | 442 ++++++++++++++++++++---------------------
NAMESPACE | 2
NEWS | 7
R/annotation-custom.r | 6
R/coord-map.r | 2
R/fortify-spatial.r | 2
R/geom-hex.r | 2
R/guide-colorbar.r | 4
R/guide-legend.r | 4
R/layer.r | 2
R/scale-.r | 14 -
R/scale-area.r | 2
R/stat-binhex.r | 4
R/stat-smooth.r | 2
R/stat-ydensity.r | 2
R/templates.r | 12 -
R/theme-elements.r | 10
R/theme.r | 10
R/translate-qplot-lattice.r | 2
build/partial.rdb |binary
build/vignette.rds |binary
inst/doc/development.R | 10
inst/doc/development.html | 19 +
inst/doc/release.R | 2
inst/doc/release.html | 16 +
man/absoluteGrob.Rd | 3
man/add_theme.Rd | 3
man/aes.Rd | 3
man/aes_all.Rd | 3
man/aes_auto.Rd | 3
man/aes_colour_fill_alpha.Rd | 3
man/aes_group_order.Rd | 3
man/aes_linetype_size_shape.Rd | 3
man/aes_position.Rd | 3
man/aes_string.Rd | 3
man/annotate.Rd | 3
man/annotation_custom.Rd | 9
man/annotation_logticks.Rd | 13 -
man/annotation_map.Rd | 3
man/annotation_raster.Rd | 3
man/autoplot.Rd | 3
man/benchplot.Rd | 3
man/borders.Rd | 3
man/calc_element.Rd | 3
man/continuous_scale.Rd | 27 +-
man/coord.Rd | 3
man/coord_cartesian.Rd | 3
man/coord_expand_defaults.Rd | 3
man/coord_fixed.Rd | 3
man/coord_flip.Rd | 3
man/coord_map.Rd | 3
man/coord_polar.Rd | 3
man/coord_quickmap.Rd | 3
man/coord_trans.Rd | 3
man/cut_interval.Rd | 3
man/cut_number.Rd | 3
man/cweave.Rd | 3
man/diamonds.Rd | 3
man/discrete_scale.Rd | 15 -
man/economics.Rd | 3
man/element_blank.Rd | 3
man/element_line.Rd | 3
man/element_rect.Rd | 3
man/element_text.Rd | 3
man/expand_limits.Rd | 3
man/facet.Rd | 3
man/facet_grid.Rd | 11 -
man/facet_null.Rd | 3
man/facet_wrap.Rd | 7
man/fortify-multcomp.Rd | 3
man/fortify.Rd | 3
man/fortify.lm.Rd | 3
man/fortify.map.Rd | 3
man/fortify.sp.Rd | 3
man/geom_abline.Rd | 7
man/geom_area.Rd | 3
man/geom_bar.Rd | 3
man/geom_bin2d.Rd | 3
man/geom_blank.Rd | 3
man/geom_boxplot.Rd | 29 +-
man/geom_contour.Rd | 15 -
man/geom_crossbar.Rd | 7
man/geom_density.Rd | 3
man/geom_density2d.Rd | 15 -
man/geom_dotplot.Rd | 41 +--
man/geom_errorbar.Rd | 3
man/geom_errorbarh.Rd | 3
man/geom_freqpoly.Rd | 3
man/geom_hex.Rd | 3
man/geom_histogram.Rd | 3
man/geom_hline.Rd | 7
man/geom_jitter.Rd | 3
man/geom_line.Rd | 3
man/geom_linerange.Rd | 3
man/geom_map.Rd | 13 -
man/geom_path.Rd | 19 -
man/geom_point.Rd | 3
man/geom_pointrange.Rd | 3
man/geom_polygon.Rd | 3
man/geom_quantile.Rd | 15 -
man/geom_raster.Rd | 17 -
man/geom_rect.Rd | 3
man/geom_ribbon.Rd | 3
man/geom_rug.Rd | 11 -
man/geom_segment.Rd | 11 -
man/geom_smooth.Rd | 3
man/geom_step.Rd | 9
man/geom_text.Rd | 9
man/geom_tile.Rd | 3
man/geom_violin.Rd | 17 -
man/geom_vline.Rd | 7
man/gg-add.Rd | 3
man/gg_dep.Rd | 3
man/ggplot.Rd | 3
man/ggplot.data.frame.Rd | 3
man/ggplot2.Rd | 3
man/ggplotGrob.Rd | 3
man/ggplot_build.Rd | 3
man/ggplot_gtable.Rd | 7
man/ggsave.Rd | 3
man/ggscale.Rd | 3
man/ggtheme.Rd | 3
man/guide_colourbar.Rd | 73 +++---
man/guide_legend.Rd | 3
man/guides.Rd | 3
man/hmisc.Rd | 3
man/interleave.Rd | 3
man/is.coord.Rd | 3
man/is.facet.Rd | 3
man/is.ggplot.Rd | 3
man/is.rel.Rd | 3
man/is.theme.Rd | 3
man/label_both.Rd | 3
man/label_bquote.Rd | 3
man/label_parsed.Rd | 3
man/label_value.Rd | 3
man/label_wrap_gen.Rd | 3
man/labeller.Rd | 3
man/labs.Rd | 7
man/last_plot.Rd | 3
man/layer.Rd | 3
man/limits.Rd | 7
man/map_data.Rd | 3
man/mean_se.Rd | 3
man/midwest.Rd | 3
man/movies.Rd | 3
man/mpg.Rd | 3
man/msleep.Rd | 3
man/opts.Rd | 3
man/plot-templates.Rd | 3
man/position_dodge.Rd | 3
man/position_fill.Rd | 3
man/position_identity.Rd | 3
man/position_jitter.Rd | 3
man/position_jitterdodge.Rd | 3
man/position_stack.Rd | 3
man/presidential.Rd | 3
man/print.ggplot.Rd | 3
man/qplot.Rd | 3
man/rel.Rd | 3
man/resolution.Rd | 3
man/rweave.Rd | 3
man/scale_alpha.Rd | 3
man/scale_area.Rd | 3
man/scale_brewer.Rd | 13 -
man/scale_continuous.Rd | 3
man/scale_date.Rd | 19 -
man/scale_datetime.Rd | 19 -
man/scale_discrete.Rd | 3
man/scale_gradient.Rd | 13 -
man/scale_gradient2.Rd | 19 -
man/scale_gradientn.Rd | 13 -
man/scale_grey.Rd | 9
man/scale_hue.Rd | 7
man/scale_identity.Rd | 3
man/scale_linetype.Rd | 7
man/scale_manual.Rd | 11 -
man/scale_shape.Rd | 7
man/scale_size.Rd | 9
man/scale_size_area.Rd | 3
man/seals.Rd | 3
man/should_stop.Rd | 3
man/stat_abline.Rd | 3
man/stat_bin.Rd | 31 +-
man/stat_bin2d.Rd | 13 -
man/stat_bindot.Rd | 45 ++--
man/stat_binhex.Rd | 15 -
man/stat_boxplot.Rd | 13 -
man/stat_contour.Rd | 9
man/stat_density.Rd | 27 +-
man/stat_density2d.Rd | 23 +-
man/stat_ecdf.Rd | 9
man/stat_ellipse.Rd | 31 +-
man/stat_function.Rd | 15 -
man/stat_hline.Rd | 3
man/stat_identity.Rd | 3
man/stat_qq.Rd | 21 +
man/stat_quantile.Rd | 23 +-
man/stat_smooth.Rd | 33 +--
man/stat_spoke.Rd | 3
man/stat_sum.Rd | 3
man/stat_summary.Rd | 3
man/stat_summary2d.Rd | 19 -
man/stat_summary_hex.Rd | 19 -
man/stat_unique.Rd | 3
man/stat_vline.Rd | 3
man/stat_ydensity.Rd | 23 +-
man/summary.ggplot.Rd | 3
man/theme.Rd | 5
man/theme_blank.Rd | 3
man/theme_update.Rd | 3
man/translate_qplot_base.Rd | 3
man/translate_qplot_ggplot.Rd | 3
man/translate_qplot_gpl.Rd | 3
man/translate_qplot_lattice.Rd | 5
man/update_defaults.Rd | 7
man/update_element.Rd | 3
man/update_labels.Rd | 3
man/waiver.Rd | 3
man/xylim.Rd | 3
man/zeroGrob.Rd | 3
222 files changed, 1102 insertions(+), 863 deletions(-)
Title: Functions for the Detection of Spatial Clusters of Diseases
Diff between DCluster versions 0.2-6 dated 2013-01-06 and 0.2-7 dated 2015-03-17
Description: A set of functions for the detection of spatial clusters
of disease using count data. Bootstrap is used to estimate
sampling distributions of statistics.
Author: Virgilio Gómez-Rubio, Juan Ferrándiz-Ferragud and Antonio
López-Quílez, with contributions by Roger Bivand.
Maintainer: Virgilio Gómez-Rubio
DCluster-0.2-6/DCluster/R/zzz.R |only
DCluster-0.2-7/DCluster/DESCRIPTION | 11 -
DCluster-0.2-7/DCluster/MD5 | 88 ++++++-------
DCluster-0.2-7/DCluster/NAMESPACE | 100 ++++++++++++++
DCluster-0.2-7/DCluster/R/empbaysmooth.R | 114 ++++++++---------
DCluster-0.2-7/DCluster/R/kn.gumbel.iscluster.R |only
DCluster-0.2-7/DCluster/R/kullnagar.stat.R | 4
DCluster-0.2-7/DCluster/man/DCluster.Rd | 4
DCluster-0.2-7/DCluster/man/achisq.Rd | 2
DCluster-0.2-7/DCluster/man/achisq.boot.Rd | 2
DCluster-0.2-7/DCluster/man/achisq.stat.Rd | 2
DCluster-0.2-7/DCluster/man/besagnewell.Rd | 2
DCluster-0.2-7/DCluster/man/besagnewell.boot.Rd | 2
DCluster-0.2-7/DCluster/man/besagnewell.stat.Rd | 2
DCluster-0.2-7/DCluster/man/bn.iscluster.Rd | 2
DCluster-0.2-7/DCluster/man/calculate.mle.Rd | 2
DCluster-0.2-7/DCluster/man/dcluster.test.Rd | 2
DCluster-0.2-7/DCluster/man/dean_test.Rd | 2
DCluster-0.2-7/DCluster/man/gearyc.Rd | 2
DCluster-0.2-7/DCluster/man/gearyc.boot.Rd | 4
DCluster-0.2-7/DCluster/man/gearyc.stat.Rd | 6
DCluster-0.2-7/DCluster/man/get.knclusters.Rd | 2
DCluster-0.2-7/DCluster/man/kn.iscluster.Rd | 25 ++-
DCluster-0.2-7/DCluster/man/kullnagar.Rd | 2
DCluster-0.2-7/DCluster/man/kullnagar.boot.Rd | 2
DCluster-0.2-7/DCluster/man/kullnagar.stat.Rd | 2
DCluster-0.2-7/DCluster/man/lognormalEB.Rd | 2
DCluster-0.2-7/DCluster/man/moranI.Rd | 2
DCluster-0.2-7/DCluster/man/moranI.boot.Rd | 2
DCluster-0.2-7/DCluster/man/moranI.stat.Rd | 2
DCluster-0.2-7/DCluster/man/observed.sim.Rd | 2
DCluster-0.2-7/DCluster/man/opgam.Rd | 3
DCluster-0.2-7/DCluster/man/opgam.iscluster.default.Rd | 2
DCluster-0.2-7/DCluster/man/pkg-internal.Rd | 2
DCluster-0.2-7/DCluster/man/pottwhitt.Rd | 2
DCluster-0.2-7/DCluster/man/pottwhitt.boot.Rd | 2
DCluster-0.2-7/DCluster/man/pottwhitt.stat.Rd | 2
DCluster-0.2-7/DCluster/man/rmultin.Rd | 2
DCluster-0.2-7/DCluster/man/stone.boot.Rd | 11 +
DCluster-0.2-7/DCluster/man/stone.stat.Rd | 2
DCluster-0.2-7/DCluster/man/tango.Rd | 2
DCluster-0.2-7/DCluster/man/tango.boot.Rd | 2
DCluster-0.2-7/DCluster/man/tango.stat.Rd | 2
DCluster-0.2-7/DCluster/man/whittermore.Rd | 2
DCluster-0.2-7/DCluster/man/whittermore.boot.Rd | 2
DCluster-0.2-7/DCluster/man/whittermore.stat.Rd | 2
46 files changed, 275 insertions(+), 161 deletions(-)
Title: Smoothing Splines for Large Samples
Diff between bigsplines versions 1.0-5 dated 2015-02-11 and 1.0-6 dated 2015-03-17
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
ChangeLog | 28 ++
DESCRIPTION | 8
MD5 | 156 +++++++--------
R/bigspline.R | 209 +++++++++++---------
R/bigssa.R | 16 -
R/bigssg.R | 14 -
R/bigssp.R | 16 -
R/bigtps.R | 272 ++++++++++++++------------
R/binsamp.R | 26 +-
R/gcvcss.R | 8
R/gcvgss.R | 224 +++++++++++----------
R/gcvssa.R | 31 +-
R/gcvssg.R | 238 +++++++++++-----------
R/gcvssp.R | 22 +-
R/imagebar.R | 31 +-
R/lamcoef.R | 44 ++--
R/lamcoefg.R | 255 ++++++++++++------------
R/lamloop.R | 26 +-
R/lamloopg.R | 233 +++++++++++-----------
R/makeZtX.R | 36 +--
R/makeZtZ.R | 38 +--
R/makerkm.R | 69 +++---
R/makessa.R | 274 +++++++++++++-------------
R/makessg.R | 300 +++++++++++++++-------------
R/makessp.R | 286 ++++++++++++++-------------
R/nbmle.R | 8
R/pdsXty.R | 6
R/pinvsm.R | 6
R/postvar.R | 2
R/predict.bigspline.R | 106 +++++-----
R/predict.bigssa.R | 177 +++++++++--------
R/predict.bigssg.R | 196 ++++++++++--------
R/predict.bigssp.R | 165 ++++++++-------
R/predict.bigtps.R | 58 +++--
R/print.bigssa.R | 8
R/print.bigssg.R | 8
R/print.bigssp.R | 8
R/print.summary.bigspline.R | 6
R/print.summary.bigssa.R | 6
R/print.summary.bigssg.R | 6
R/print.summary.bigssp.R | 6
R/print.summary.bigtps.R | 6
R/remlri.R | 77 ++++---
R/remlvc.R | 86 ++++----
R/rkron.R | 15 -
R/smartssa.R | 173 ++++++++--------
R/smartssg.R | 191 +++++++++---------
R/smartssp.R | 20 -
R/ssadpm.R | 200 ++++++++++---------
R/ssawork.R | 399 +++++++++++++++++++++-----------------
R/ssblup.R | 12 -
R/ssgwork.R | 456 ++++++++++++++++++++++++--------------------
R/sspdpm.R | 215 ++++++++++----------
R/sspwork.R | 349 ++++++++++++++++++---------------
R/summary.bigspline.R | 40 ++-
R/summary.bigssa.R | 48 ++--
R/summary.bigssg.R | 119 ++++++-----
R/summary.bigssp.R | 48 ++--
R/summary.bigtps.R | 40 ++-
R/tcprod.R | 8
R/unifqsum.R | 5
R/unifqsumg.R | 2
man/bigspline.Rd | 34 +--
man/bigsplines-package.Rd | 4
man/bigssa.Rd | 87 ++++----
man/bigssg.Rd | 165 ++++++++-------
man/bigssp.Rd | 41 ++-
man/bigtps.Rd | 55 ++---
man/binsamp.Rd | 24 +-
man/imagebar.Rd | 36 ++-
man/makessa.Rd | 26 +-
man/makessg.Rd | 32 +--
man/makessp.Rd | 26 +-
man/predict.bigspline.Rd | 73 +++----
man/predict.bigssa.Rd | 60 +++--
man/predict.bigssg.Rd | 76 ++++---
man/predict.bigssp.Rd | 59 +++--
man/predict.bigtps.Rd | 75 ++++---
man/summary.Rd | 55 +++--
79 files changed, 3796 insertions(+), 3273 deletions(-)
Title: A Computational Tool for Astrochronology
Diff between astrochron versions 0.3.1 dated 2014-07-20 and 0.4.1 dated 2015-03-17
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers
astrochron-0.3.1/astrochron/R/FUNCTION-ar1_v4.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-ar1etp_v7.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-bandpass_v11.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-eAsmTrack.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-eAsm_v1a.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-eha_v12.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-etp_v5a.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-extract_v3.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-hilbert_v11.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-idPts_v7.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-iso_v6.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-lowpass_v9.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-lowspec_v12.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-mtm_v8.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-peak_v4.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-periodogram_v10.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-pl_v5.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-plotEha_v2.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-readMatrix.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-read_v22.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-strats_v4.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-traceFreq_v4.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-trackFreq_v6.R |only
astrochron-0.3.1/astrochron/R/FUNCTION-xplot.R |only
astrochron-0.4.1/astrochron/DESCRIPTION | 14
astrochron-0.4.1/astrochron/MD5 | 227 ++++++------
astrochron-0.4.1/astrochron/NAMESPACE | 12
astrochron-0.4.1/astrochron/R/FUNCTION-anchorTime_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-ar1_v6.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-ar1etp_v9.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-arcsinT_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-armaGen_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-asm_v10a.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-autoPlot_v7.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-bandpass_v13.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-bergerPeriods_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-cb_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-clipIt.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-constantSedrate_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-cosTaper_v8.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-cycles_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-delPts_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-demean_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-detrend_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-divTrend_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-dpssTaper_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-eAsmTrack_v2.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-eAsm_v2.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-eha_v15.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-etp_v6.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-extract_v5.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-flip.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-freq2sedrate_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-gausTaper_v7.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-getColor.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-getLaskar.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-hannTaper_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-headn_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-hilbert_v14.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-idPts_v9.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-integratePower_v7.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-iso_v8.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-linage.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-linterp_v7.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-logT_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-lowpass_v10.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-lowspec_v16.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-mtmAR_v6.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-mtmML96_v8.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-mtm_v12.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-noKernel_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-noLow_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-pad.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-peak_v5.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-periodogram_v12.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-plS.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-pl_v6.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-plotEha_v3.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-prewhiteAR1_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-prewhiteAR_v4.R | 4
astrochron-0.4.1/astrochron/R/FUNCTION-rankSeries.R | 4
astrochron-0.4.1/astrochron/R/FUNCTION-readMatrix_v3.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-read_v23.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-repl0_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-replEps_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-resample_v4.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-s.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-sedRamp_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-sedrate2time_v2.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-sortNave_v7.R | 6
astrochron-0.4.1/astrochron/R/FUNCTION-stepHeat_v3.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-strats_v9.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-surrogates.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-taner_v5.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-testPrecession.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-tones.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-traceFreq_v5.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-trackFreq_v7.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-trimAT_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-trim_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-trough.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-tune_v7a.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-writeCSV_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-writeT_v3.R | 2
astrochron-0.4.1/astrochron/R/FUNCTION-wtMean_v11.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-xplot_v3.R |only
astrochron-0.4.1/astrochron/R/FUNCTION-zoomIn_v2.R | 2
astrochron-0.4.1/astrochron/data/modelA.rda |binary
astrochron-0.4.1/astrochron/inst/CITATION | 6
astrochron-0.4.1/astrochron/man/ar1.Rd | 25 -
astrochron-0.4.1/astrochron/man/ar1etp.Rd | 44 +-
astrochron-0.4.1/astrochron/man/asm.Rd | 8
astrochron-0.4.1/astrochron/man/astrochron-package.Rd | 33 +
astrochron-0.4.1/astrochron/man/bandpass.Rd | 9
astrochron-0.4.1/astrochron/man/cb.Rd | 2
astrochron-0.4.1/astrochron/man/cycles.Rd | 5
astrochron-0.4.1/astrochron/man/eAsm.Rd | 7
astrochron-0.4.1/astrochron/man/eha.Rd | 2
astrochron-0.4.1/astrochron/man/etp.Rd | 40 +-
astrochron-0.4.1/astrochron/man/extract.Rd | 2
astrochron-0.4.1/astrochron/man/getLaskar.Rd |only
astrochron-0.4.1/astrochron/man/hilbert.Rd | 15
astrochron-0.4.1/astrochron/man/idPts.Rd | 8
astrochron-0.4.1/astrochron/man/integratePower.Rd |only
astrochron-0.4.1/astrochron/man/iso.Rd | 4
astrochron-0.4.1/astrochron/man/linage.Rd | 13
astrochron-0.4.1/astrochron/man/lowpass.Rd | 15
astrochron-0.4.1/astrochron/man/lowspec.Rd | 49 +-
astrochron-0.4.1/astrochron/man/mtm.Rd | 31 +
astrochron-0.4.1/astrochron/man/mtmAR.Rd |only
astrochron-0.4.1/astrochron/man/mtmML96.Rd |only
astrochron-0.4.1/astrochron/man/peak.Rd | 7
astrochron-0.4.1/astrochron/man/periodogram.Rd | 75 ++-
astrochron-0.4.1/astrochron/man/pl.Rd | 5
astrochron-0.4.1/astrochron/man/rankSeries.Rd | 3
astrochron-0.4.1/astrochron/man/read.Rd | 4
astrochron-0.4.1/astrochron/man/readMatrix.Rd | 6
astrochron-0.4.1/astrochron/man/sedRamp.Rd | 2
astrochron-0.4.1/astrochron/man/stepHeat.Rd |only
astrochron-0.4.1/astrochron/man/strats.Rd | 9
astrochron-0.4.1/astrochron/man/surrogates.Rd |only
astrochron-0.4.1/astrochron/man/taner.Rd |only
astrochron-0.4.1/astrochron/man/testPrecession.Rd |only
astrochron-0.4.1/astrochron/man/traceFreq.Rd | 10
astrochron-0.4.1/astrochron/man/trackFreq.Rd | 10
astrochron-0.4.1/astrochron/man/trough.Rd |only
astrochron-0.4.1/astrochron/man/wtMean.Rd |only
astrochron-0.4.1/astrochron/man/xplot.Rd | 14
astrochron-0.4.1/astrochron/src/trough_R.f |only
149 files changed, 524 insertions(+), 292 deletions(-)
Title: A Google Analytics API Client
Diff between RGA versions 0.2 dated 2015-02-02 and 0.2.1 dated 2015-03-17
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
R/shiny.R | 9 ++++++++-
R/url.R | 4 +++-
build/vignette.rds |binary
data/ga.rda |binary
inst/NEWS.Rd | 29 ++++++++++++++++++++---------
inst/doc/management-api.html | 4 ++--
inst/doc/metadata-api.Rmd | 20 ++++++++++----------
inst/doc/metadata-api.html | 24 ++++++++++++------------
inst/doc/reporting-api.html | 4 ++--
vignettes/metadata-api.Rmd | 20 ++++++++++----------
12 files changed, 82 insertions(+), 62 deletions(-)
Title: Clustering of Variables Around Latent Variables
Diff between ClustVarLV versions 1.3.1 dated 2014-09-04 and 1.3.2 dated 2015-03-17
Description: Functions for the clustering of variables around Latent Variables. Each cluster of variables, which may be defined as a local or directional cluster, is associated with a latent variable.
External variables measured on the same observations or/and additional information on the variables can be taken into account.
Author: Evelyne Vigneau, Mingkun Chen
Maintainer: Evelyne Vigneau
ClustVarLV-1.3.1/ClustVarLV/R/CLV-internal.R |only
ClustVarLV-1.3.1/ClustVarLV/src/Makevars |only
ClustVarLV-1.3.1/ClustVarLV/src/Makevars.win |only
ClustVarLV-1.3.2/ClustVarLV/DESCRIPTION | 21 +--
ClustVarLV-1.3.2/ClustVarLV/MD5 | 40 +++----
ClustVarLV-1.3.2/ClustVarLV/R/CLV.R | 49 +++++---
ClustVarLV-1.3.2/ClustVarLV/R/CLV_kmeans.R | 27 ++++
ClustVarLV-1.3.2/ClustVarLV/R/LCLV.R | 11 +-
ClustVarLV-1.3.2/ClustVarLV/R/consol_calcul.R | 25 ++--
ClustVarLV-1.3.2/ClustVarLV/R/consol_calcul_s.R | 8 -
ClustVarLV-1.3.2/ClustVarLV/R/gpmb_on_pc.R | 114 ++++++++++++++++++--
ClustVarLV-1.3.2/ClustVarLV/R/print.clv.r | 2
ClustVarLV-1.3.2/ClustVarLV/R/print.clvkmeans.r | 2
ClustVarLV-1.3.2/ClustVarLV/R/print.lclv.r | 2
ClustVarLV-1.3.2/ClustVarLV/man/CLV.Rd | 115 +++++++++------------
ClustVarLV-1.3.2/ClustVarLV/man/CLV_kmeans.Rd | 84 ++++++---------
ClustVarLV-1.3.2/ClustVarLV/man/LCLV.Rd | 104 +++++++-----------
ClustVarLV-1.3.2/ClustVarLV/man/descrip_gp.Rd | 13 +-
ClustVarLV-1.3.2/ClustVarLV/man/gpmb_on_pc.Rd | 30 ++---
ClustVarLV-1.3.2/ClustVarLV/man/print.clv.Rd | 7 -
ClustVarLV-1.3.2/ClustVarLV/man/print.clvkmeans.Rd | 7 -
ClustVarLV-1.3.2/ClustVarLV/man/print.lclv.Rd | 7 -
ClustVarLV-1.3.2/ClustVarLV/vignettes |only
23 files changed, 376 insertions(+), 292 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-16 1.1
Title: Data Supporting the 'VGAM' Package
Diff between VGAMdata versions 0.9-5 dated 2014-11-04 and 0.9-7 dated 2015-03-17
Description: Data sets to accompany the VGAM package.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology.
Author: Thomas W. Yee
Maintainer: Thomas Yee
DESCRIPTION | 10 +++---
MD5 | 74 ++++++++++++++++++++++++++-------------------------
NAMESPACE | 2 -
NEWS | 14 +++++++++
R/family.fishing.R | 2 -
data/bb.de.rda |binary
data/belcap.rda |binary
data/crashf.au.rda |binary
data/crime.us.rda |binary
data/datalist | 1
data/exam1.rda |binary
data/fibre15.rda |binary
data/fibre1dot5.rda |binary
data/gala.rda |binary
data/hued.rda |binary
data/huie.rda |binary
data/huse.rda |binary
data/oly12.rda |binary
data/prison.us.rda |binary
data/profs.nz.rda |binary
data/rainfall.rda |binary
data/rugby.rda |binary
data/rugby.ties.rda |binary
data/students.tw.rda |binary
data/trapO.rda |binary
data/tube10.rda |only
data/ugss.rda |binary
data/vtinpat.rda |binary
data/wffc.indiv.rda |binary
data/wffc.nc.rda |binary
data/wffc.rda |binary
data/wffc.teams.rda |binary
data/xs.nz.rda |binary
man/belcap.Rd | 10 ++++--
man/exam1.Rd | 3 +-
man/profs.nz.Rd | 17 +++++++++++
man/tube10.Rd |only
man/wffc.P2star.Rd | 4 ++
man/wffc.Rd | 5 ++-
39 files changed, 90 insertions(+), 52 deletions(-)
Title: Markov Beta and Gamma Processes for Modeling Hazard Rates
Diff between BGPhazard versions 1.1 dated 2014-09-09 and 1.2.2 dated 2015-03-17
Description: Computes the hazard rate estimate as described by Nieto-Barajas and Walker (2002) and Nieto-Barajas (2003).
Author: L. E. Nieto-Barajas and J. A. Garcia Bueno
Maintainer: Jose Antonio Garcia Bueno
BGPhazard-1.1/BGPhazard/R/CGaPrU.R |only
BGPhazard-1.1/BGPhazard/R/CGaTao.R |only
BGPhazard-1.1/BGPhazard/R/CGaUpdC.R |only
BGPhazard-1.1/BGPhazard/R/CGaUpdU.R |only
BGPhazard-1.1/BGPhazard/R/CUpdLambda.R |only
BGPhazard-1.1/BGPhazard/man/CGaPrU.Rd |only
BGPhazard-1.1/BGPhazard/man/CGaTao.Rd |only
BGPhazard-1.1/BGPhazard/man/CGaUpdC.Rd |only
BGPhazard-1.1/BGPhazard/man/CGaUpdU.Rd |only
BGPhazard-1.1/BGPhazard/man/CUpdLambda.Rd |only
BGPhazard-1.2.2/BGPhazard/DESCRIPTION | 18 --
BGPhazard-1.2.2/BGPhazard/MD5 | 76 ++++----
BGPhazard-1.2.2/BGPhazard/NAMESPACE | 2
BGPhazard-1.2.2/BGPhazard/R/BePloth.R | 22 +-
BGPhazard-1.2.2/BGPhazard/R/CGaM.R | 2
BGPhazard-1.2.2/BGPhazard/R/CGaMRes.R | 8
BGPhazard-1.2.2/BGPhazard/R/CGaN.R | 2
BGPhazard-1.2.2/BGPhazard/R/CGaPloth.R | 22 +-
BGPhazard-1.2.2/BGPhazard/R/GaPloth.R | 20 +-
BGPhazard-1.2.2/BGPhazard/R/GaTao.R | 1
BGPhazard-1.2.2/BGPhazard/R/PlotTheta.R | 27 ++-
BGPhazard-1.2.2/BGPhazard/build/vignette.rds |binary
BGPhazard-1.2.2/BGPhazard/data |only
BGPhazard-1.2.2/BGPhazard/inst/doc/BGPhazard.R | 58 ++----
BGPhazard-1.2.2/BGPhazard/inst/doc/BGPhazard.Rnw | 34 +---
BGPhazard-1.2.2/BGPhazard/inst/doc/BGPhazard.pdf |binary
BGPhazard-1.2.2/BGPhazard/man/BGPhazard-package.Rd | 85 ++++++++--
BGPhazard-1.2.2/BGPhazard/man/BeMRes.Rd | 29 ++-
BGPhazard-1.2.2/BGPhazard/man/BePlotDiag.Rd | 25 ++
BGPhazard-1.2.2/BGPhazard/man/BePloth.Rd | 24 +-
BGPhazard-1.2.2/BGPhazard/man/CGaM.Rd | 4
BGPhazard-1.2.2/BGPhazard/man/CGaMRes.Rd | 56 ++++--
BGPhazard-1.2.2/BGPhazard/man/CGaN.Rd | 4
BGPhazard-1.2.2/BGPhazard/man/CGaPlotDiag.Rd | 18 +-
BGPhazard-1.2.2/BGPhazard/man/CGaPloth.Rd | 42 +++-
BGPhazard-1.2.2/BGPhazard/man/CGaPred.Rd | 16 +
BGPhazard-1.2.2/BGPhazard/man/GaMRes.Rd | 31 ++-
BGPhazard-1.2.2/BGPhazard/man/GaPlotDiag.Rd | 25 ++
BGPhazard-1.2.2/BGPhazard/man/GaPloth.Rd | 24 +-
BGPhazard-1.2.2/BGPhazard/man/PlotTheta.Rd | 33 ++-
BGPhazard-1.2.2/BGPhazard/man/gehan.Rd |only
BGPhazard-1.2.2/BGPhazard/man/leukemiaFZ.Rd |only
BGPhazard-1.2.2/BGPhazard/man/psych.Rd |only
BGPhazard-1.2.2/BGPhazard/vignettes/BGPhazard-concordance.tex |only
BGPhazard-1.2.2/BGPhazard/vignettes/BGPhazard.Rnw | 34 +---
BGPhazard-1.2.2/BGPhazard/vignettes/BGPhazard.tex |only
46 files changed, 447 insertions(+), 295 deletions(-)