Wed, 18 Mar 2015

Package rplexos updated to version 0.13 with previous version 0.12.1 dated 2015-02-04

Title: Read and Analyze PLEXOS Solutions
Description: Efficiently read and analyze PLEXOS solutions by converting them into SQLite databases that can be easily queried. It supports collation of solutions that may have been divided into different time partitions, as well as the comparison across different scenarios.
Author: Eduardo Ibanez [aut, cre], Marcin Kalicinski [ctb] (for the included RapidXml source), National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez

Diff between rplexos versions 0.12.1 dated 2015-02-04 and 0.13 dated 2015-03-18

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 46 files changed, 2969 insertions(+), 2857 deletions(-)

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Package robumeta updated to version 1.6 with previous version 1.5 dated 2015-01-12

Title: Robust Variance Meta-Regression
Description: Functions for conducting robust variance estimation (RVE) meta-regression using both large and small sample RVE estimators under various weighting schemes. These methods are distribution free and provide valid point estimates, standard errors and hypothesis tests even when the degree and structure of dependence between effect sizes is unknown. Also included are functions for conducting sensitivity analyses under correlated effects weighting and producing RVE-based forest plots.
Author: Zachary Fisher and Elizabeth Tipton.
Maintainer: Zachary Fisher

Diff between robumeta versions 1.5 dated 2015-01-12 and 1.6 dated 2015-03-18

 DESCRIPTION  |   10 +++++-----
 MD5          |    6 +++---
 NAMESPACE    |    4 +++-
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 4 files changed, 14 insertions(+), 10 deletions(-)

More information about robumeta at CRAN
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Package BatchExperiments updated to version 1.4.1 with previous version 1.4 dated 2014-10-31

Title: Statistical Experiments on Batch Computing Clusters
Description: Extends the BatchJobs package to run statistical experiments on batch computing clusters. For further details see the project web page.
Author: Bernd Bischl , Michel Lang , Olaf Mersmann
Maintainer: Michel Lang

Diff between BatchExperiments versions 1.4 dated 2014-10-31 and 1.4.1 dated 2015-03-18

 DESCRIPTION                                            |   10 +-
 MD5                                                    |   79 ++++++++---------
 NAMESPACE                                              |    3 
 NEWS                                                   |   14 ++-
 R/Algorithm.R                                          |    2 
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 42 files changed, 283 insertions(+), 131 deletions(-)

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Permanent link

Package ncvreg updated to version 3.3-0 with previous version 3.2-0 dated 2014-07-12

Title: Regularization Paths for SCAD and MCP Penalized Regression Models
Description: Efficient algorithms for fitting regularization paths for linear or logistic regression models penalized by MCP or SCAD, with optional additional L2 penalty.
Author: Patrick Breheny [aut,cre], Sangin Lee [ctb]
Maintainer: Patrick Breheny

Diff between ncvreg versions 3.2-0 dated 2014-07-12 and 3.3-0 dated 2015-03-18

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Package MVN updated to version 3.9 with previous version 3.8 dated 2015-01-28

Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and implements multivariate outlier detection and univariate normality of marginal distributions through plots and tests.
Author: Selcuk Korkmaz [aut, cre], Dincer Goksuluk [aut], Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz

Diff between MVN versions 3.8 dated 2015-01-28 and 3.9 dated 2015-03-18

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More information about MVN at CRAN
Permanent link

New package CARLIT with initial version 1.0
Package: CARLIT
Type: Package
Title: Ecological Quality Ratios Calculation and Plot
Version: 1.0
Date: 2015-03-17
Author: Danilo Pecorino, Gina de la Fuente Mancebo, Xavier Torras
Maintainer: Danilo Pecorino
Description: Functions to calculate and plot ecological quality ratios (EQR) as specified by Ballesteros et al. 2007.
License: GPL-2
Packaged: 2015-03-18 13:33:54 UTC; danilo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-18 18:01:26

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Package BatchJobs updated to version 1.6 with previous version 1.5 dated 2014-10-30

Title: Batch Computing with R
Description: Provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported. For further details see the project web page.
Author: Bernd Bischl , Michel Lang , Henrik Bengtsson
Maintainer: Bernd Bischl

Diff between BatchJobs versions 1.5 dated 2014-10-30 and 1.6 dated 2015-03-18

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Package BAMMtools updated to version 2.0.4 with previous version 2.0.2 dated 2014-07-10

Title: Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
Description: Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.
Author: Dan Rabosky, Mike Grundler, Pascal Title, Carlos Anderson, Jeff Shi, Joseph Brown, Huateng Huang
Maintainer: Pascal Title

Diff between BAMMtools versions 2.0.2 dated 2014-07-10 and 2.0.4 dated 2015-03-18

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 MD5                             |   89 ++++++++++++++++-------------
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More information about BAMMtools at CRAN
Permanent link

Package miP (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-06-09 1.1
2011-05-22 1.0

Permanent link
Package splancs updated to version 2.01-37 with previous version 2.01-36 dated 2014-10-03

Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre], Barry Rowlingson [aut], Peter Diggle [aut], Giovanni Petris [ctb], Stephen Eglen [ctb]
Maintainer: Roger Bivand

Diff between splancs versions 2.01-36 dated 2014-10-03 and 2.01-37 dated 2015-03-18

 ChangeLog      |   20 ++++++++++++++++++++
 DESCRIPTION    |   10 +++++-----
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 6 files changed, 55 insertions(+), 11 deletions(-)

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Permanent link

Package fanc updated to version 1.22 with previous version 1.13 dated 2013-08-06

Title: Penalized Likelihood Factor Analysis via Nonconvex Penalty
Description: An R package "fanc" computes the penalized maximum likelihood estimates of factor loadings and unique variances for various tuning parameters. The pathwise coordinate descent along with EM algorithm is used. This package also includes a new graphical tool which outputs path diagram, goodness-of-fit indices and model selection criteria for each regularization parameter. The user can change the regularization parameter by manipulating scrollbars, which is helpful to find a suitable value of regularization parameter.
Author: Kei Hirose, Michio Yamamoto
Maintainer: Kei Hirose

Diff between fanc versions 1.13 dated 2013-08-06 and 1.22 dated 2015-03-18

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Package radiant updated to version 0.1.75 with previous version 0.1.71 dated 2015-03-16

Title: Business Analytics using R and Shiny
Description: A platform-independent browser-based interface for business analytics in R, based on the Shiny package.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs

Diff between radiant versions 0.1.71 dated 2015-03-16 and 0.1.75 dated 2015-03-18

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Package PerFit updated to version 1.3.1 with previous version 1.3 dated 2015-03-13

Title: Person Fit
Description: Several person-fit statistics (PFSs) are offered. These statistics allow assessing whether individual response patterns to tests or questionnaires are (im)plausible given the other respondents in the sample or given a specified item response theory model. Some PFSs apply to dichotomous data, such as the likelihood-based PFSs (lz, lz*) and the group-based PFSs (personal biserial correlation, caution index, (normed) number of Guttman errors, agreement/disagreement/dependability statistics, U3, ZU3, NCI, Ht). PFSs suitable to polytomous data include extensions of lz, U3, and (normed) number of Guttman errors.
Author: Jorge N. Tendeiro
Maintainer: Jorge N. Tendeiro

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Package jtrans updated to version 0.2.1 with previous version 0.1 dated 2013-07-24

Title: Johnson Transformation for Normality
Description: Transforming univariate non-normal data to normality using Johnson families of distributions. Johnson family is a comprehensive distribution family that accommodates many kinds of non-normal distributions. A bunch of distributions with various parameters will be fit and the corresponding p-values under a user-specified normality test will be given. The final transformation will be the one with the largest p-value under the given normality test.
Author: Yuchen Wang [aut, cre]
Maintainer: Yuchen Wang

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Package saccades updated to version 0.1-1 with previous version 0.1 dated 2014-10-04

Title: Detection of Fixations in Eye-Tracking Data
Description: Functions for detecting eye fixations in raw eye-tracking data. The detection is done using a velocity-based algorithm for saccade detection proposed by Ralf Engbert and Reinhold Kliegl in 2003. The algorithm labels segments as saccades when the velocity of the eye movement exceeds a certain threshold. Anything between two saccades is considered a fixation. Thus the algorithm is not appropriate for data containing episodes of smooth pursuit eye movements.
Author: Titus von der Malsburg [aut, cph, cre]
Maintainer: Titus von der Malsburg

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Package psd updated to version 1.0-0 with previous version 0.4-1 dated 2014-04-16

Title: Adaptive, Sine-Multitaper Power Spectral Density Estimation
Description: Produces power spectral density estimates through iterative refinement of the optimal number of sine-tapers at each frequency. This optimization procedure is based on the method of Riedel and Sidorenko (1995), which minimizes the Mean Square Error (sum of variance and bias) at each frequency, but modified for computational stability.
Author: Andrew J. Barbour and Robert L. Parker, with contributions from David Myer
Maintainer: Andrew J. Barbour

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Package FuzzyStatProb updated to version 2.0 with previous version 1.0 dated 2013-03-11

Title: Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain
Description: An implementation of a method for computing fuzzy numbers representing stationary probabilities of an unknown Markov chain, from which a sequence of observations along time has been obtained. The algorithm is based on the proposal presented by James Buckley in his book on Fuzzy probabilities (Springer, 2005), chapter 6. Package FuzzyNumbers is used to represent the output probabilities.
Author: Author: Pablo J. Villacorta
Maintainer: Pablo J. Villacorta

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Package fftwtools updated to version 0.9-7 with previous version 0.9-6 dated 2014-02-20

Title: Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
Description: Provides a wrapper for several FFTW functions. This package provides access to the two-dimensional FFT, the multivariate FFT, and the one-dimensional real to complex FFT using FFTW3. The package includes the functions fftw and mvfftw which are designed to mimic the functionality of the R functions fft and mvfft. The FFT functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
Author: Karim Rahim
Maintainer: Karim Rahim

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Package decode updated to version 1.1 with previous version 1.0 dated 2015-01-28

Title: Differential Co-Expression and Differential Expression Analysis
Description: Integrated differential expression (DE) and differential co-expression (DC) analysis on gene expression data based on DECODE (DifferEntial CO-expression and Differential Expression) algorithm.
Author: Thomas Lui [aut, cre]
Maintainer: Thomas Lui

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