Title: Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Description: Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.
Author: Christina Knudson
Maintainer: Christina Knudson
Diff between glmm versions 1.0.1 dated 2015-02-12 and 1.0.2 dated 2015-03-19
glmm-1.0.1/glmm/src/fixelGH.c |only glmm-1.0.2/glmm/DESCRIPTION | 8 +++++--- glmm-1.0.2/glmm/MD5 | 21 ++++++++++++++------- glmm-1.0.2/glmm/R/glmm.R | 10 ++++++++-- glmm-1.0.2/glmm/R/summary.mcla.R | 11 +++++++++-- glmm-1.0.2/glmm/build |only glmm-1.0.2/glmm/inst |only glmm-1.0.2/glmm/man/glmm.Rd | 2 +- glmm-1.0.2/glmm/man/summary.glmm.Rd | 1 + glmm-1.0.2/glmm/tests/basicBHtest.Rout.save | 5 ++++- glmm-1.0.2/glmm/tests/salamFiniteDiffs.R |only glmm-1.0.2/glmm/tests/salamFiniteDiffs.Rout.save |only glmm-1.0.2/glmm/vignettes |only 13 files changed, 42 insertions(+), 16 deletions(-)
Title: Direction Analysis for Pathways and Kinases
Description: Direction analysis is a set of tools designed to integrate multiple experimental treatments for analyzing pathways and kinases from microarray, RNA-seq, proteomics, or phosphoproteomics data.
Author: Pengyi Yang & Ellis Patrick
Maintainer: Pengyi Yang
Diff between directPA versions 1.0 dated 2013-10-22 and 1.1 dated 2015-03-19
directPA-1.0/directPA/R/rotate2Sphere.R |only directPA-1.0/directPA/R/rotate3Sphere.R |only directPA-1.0/directPA/data/PM.RData |only directPA-1.0/directPA/data/reactome.RData |only directPA-1.0/directPA/man/Ins.Rd |only directPA-1.0/directPA/man/MK.Rd |only directPA-1.0/directPA/man/Wmn.Rd |only directPA-1.0/directPA/man/reactome.list.Rd |only directPA-1.0/directPA/man/rotate2Sphere.Rd |only directPA-1.0/directPA/man/rotate3Sphere.Rd |only directPA-1.1/directPA/DESCRIPTION | 14 - directPA-1.1/directPA/MD5 | 46 +++--- directPA-1.1/directPA/NAMESPACE | 16 +- directPA-1.1/directPA/R/directEnrichPlot2d.R |only directPA-1.1/directPA/R/directExplorer2d.R |only directPA-1.1/directPA/R/directPA.R | 166 ++++++++++++++++----- directPA-1.1/directPA/R/geneStats.R | 63 +++++--- directPA-1.1/directPA/R/pathwayStats.R | 91 ++++++++--- directPA-1.1/directPA/R/rotate2d.R |only directPA-1.1/directPA/R/rotate3d.R |only directPA-1.1/directPA/data/HEK.rda |only directPA-1.1/directPA/data/PM.rda |only directPA-1.1/directPA/data/Pathways.rda |only directPA-1.1/directPA/data/PhosphoSite.rda |only directPA-1.1/directPA/man/HEK.Rd |only directPA-1.1/directPA/man/PM.Rd |only directPA-1.1/directPA/man/Pathways.KEGG.Rd |only directPA-1.1/directPA/man/Pathways.reactome.Rd |only directPA-1.1/directPA/man/PhosphoSite.human.Rd |only directPA-1.1/directPA/man/PhosphoSite.mouse.Rd |only directPA-1.1/directPA/man/directEnrichPlot2d.Rd |only directPA-1.1/directPA/man/directExplorer2d.Rd |only directPA-1.1/directPA/man/directPA-package.Rd | 58 +++---- directPA-1.1/directPA/man/directPA.Rd | 183 ++++++++++++------------ directPA-1.1/directPA/man/geneStats.Rd | 100 ++++--------- directPA-1.1/directPA/man/pathwayStats.Rd | 106 ++++++------- directPA-1.1/directPA/man/rotate2d.Rd |only directPA-1.1/directPA/man/rotate3d.Rd |only 38 files changed, 488 insertions(+), 355 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang
Maintainer: Michel Lang
Diff between checkmate versions 1.5.1 dated 2014-12-13 and 1.5.2 dated 2015-03-19
checkmate-1.5.1/checkmate/src/as_type.c |only checkmate-1.5.1/checkmate/src/as_type.h |only checkmate-1.5.1/checkmate/src/bounds.c |only checkmate-1.5.1/checkmate/src/bounds.h |only checkmate-1.5.1/checkmate/src/comps.c |only checkmate-1.5.1/checkmate/src/comps.h |only checkmate-1.5.1/checkmate/src/qtest.c |only checkmate-1.5.1/checkmate/src/qtest.h |only checkmate-1.5.1/checkmate/src/rules.c |only checkmate-1.5.1/checkmate/src/rules.h |only checkmate-1.5.2/checkmate/DESCRIPTION | 6 checkmate-1.5.2/checkmate/MD5 | 198 ++-- checkmate-1.5.2/checkmate/NAMESPACE | 2 checkmate-1.5.2/checkmate/NEWS | 10 checkmate-1.5.2/checkmate/R/checkAccess.r | 3 checkmate-1.5.2/checkmate/R/checkArray.r | 3 checkmate-1.5.2/checkmate/R/checkAtomic.r | 3 checkmate-1.5.2/checkmate/R/checkAtomicVector.r | 3 checkmate-1.5.2/checkmate/R/checkCharacter.r | 4 checkmate-1.5.2/checkmate/R/checkClass.r | 15 checkmate-1.5.2/checkmate/R/checkComplex.r | 3 checkmate-1.5.2/checkmate/R/checkCount.r | 3 checkmate-1.5.2/checkmate/R/checkDataFrame.r | 4 checkmate-1.5.2/checkmate/R/checkFactor.r | 40 checkmate-1.5.2/checkmate/R/checkFlag.r | 3 checkmate-1.5.2/checkmate/R/checkInt.r | 3 checkmate-1.5.2/checkmate/R/checkInteger.r | 3 checkmate-1.5.2/checkmate/R/checkIntegerish.r | 3 checkmate-1.5.2/checkmate/R/checkList.r | 4 checkmate-1.5.2/checkmate/R/checkLogical.r | 3 checkmate-1.5.2/checkmate/R/checkMatrix.r | 3 checkmate-1.5.2/checkmate/R/checkNamed.r | 3 checkmate-1.5.2/checkmate/R/checkNames.r | 3 checkmate-1.5.2/checkmate/R/checkNull.r | 2 checkmate-1.5.2/checkmate/R/checkNumber.r | 3 checkmate-1.5.2/checkmate/R/checkNumeric.r | 3 checkmate-1.5.2/checkmate/R/checkPercentage.r | 3 checkmate-1.5.2/checkmate/R/checkScalar.r | 3 checkmate-1.5.2/checkmate/R/checkVector.r | 3 checkmate-1.5.2/checkmate/R/qassert.r | 4 checkmate-1.5.2/checkmate/R/qassertr.r | 1 checkmate-1.5.2/checkmate/man/anyInfinite.Rd | 3 checkmate-1.5.2/checkmate/man/anyMissing.Rd | 3 checkmate-1.5.2/checkmate/man/asInteger.Rd | 3 checkmate-1.5.2/checkmate/man/assert.Rd | 3 checkmate-1.5.2/checkmate/man/checkAccess.Rd | 3 checkmate-1.5.2/checkmate/man/checkArray.Rd | 3 checkmate-1.5.2/checkmate/man/checkAtomic.Rd | 3 checkmate-1.5.2/checkmate/man/checkAtomicVector.Rd | 3 checkmate-1.5.2/checkmate/man/checkCharacter.Rd | 3 checkmate-1.5.2/checkmate/man/checkChoice.Rd | 3 checkmate-1.5.2/checkmate/man/checkClass.Rd | 3 checkmate-1.5.2/checkmate/man/checkComplex.Rd | 3 checkmate-1.5.2/checkmate/man/checkCount.Rd | 3 checkmate-1.5.2/checkmate/man/checkDataFrame.Rd | 3 checkmate-1.5.2/checkmate/man/checkDirectory.Rd | 3 checkmate-1.5.2/checkmate/man/checkEnvironment.Rd | 3 checkmate-1.5.2/checkmate/man/checkFactor.Rd | 24 checkmate-1.5.2/checkmate/man/checkFile.Rd | 3 checkmate-1.5.2/checkmate/man/checkFlag.Rd | 3 checkmate-1.5.2/checkmate/man/checkFunction.Rd | 3 checkmate-1.5.2/checkmate/man/checkInt.Rd | 3 checkmate-1.5.2/checkmate/man/checkInteger.Rd | 3 checkmate-1.5.2/checkmate/man/checkIntegerish.Rd | 3 checkmate-1.5.2/checkmate/man/checkList.Rd | 3 checkmate-1.5.2/checkmate/man/checkLogical.Rd | 3 checkmate-1.5.2/checkmate/man/checkMatrix.Rd | 3 checkmate-1.5.2/checkmate/man/checkNamed.Rd | 3 checkmate-1.5.2/checkmate/man/checkNames.Rd | 3 checkmate-1.5.2/checkmate/man/checkNull.Rd | 3 checkmate-1.5.2/checkmate/man/checkNumber.Rd | 3 checkmate-1.5.2/checkmate/man/checkNumeric.Rd | 3 checkmate-1.5.2/checkmate/man/checkPathForOutput.Rd | 3 checkmate-1.5.2/checkmate/man/checkPercentage.Rd | 3 checkmate-1.5.2/checkmate/man/checkScalar.Rd | 3 checkmate-1.5.2/checkmate/man/checkScalarNA.Rd | 3 checkmate-1.5.2/checkmate/man/checkSetEqual.Rd | 3 checkmate-1.5.2/checkmate/man/checkString.Rd | 3 checkmate-1.5.2/checkmate/man/checkSubset.Rd | 3 checkmate-1.5.2/checkmate/man/checkVector.Rd | 3 checkmate-1.5.2/checkmate/man/checkmate.Rd | 3 checkmate-1.5.2/checkmate/man/qassert.Rd | 5 checkmate-1.5.2/checkmate/man/qassertr.Rd | 3 checkmate-1.5.2/checkmate/src/all_nchar.c | 2 checkmate-1.5.2/checkmate/src/checks.c | 273 +++--- checkmate-1.5.2/checkmate/src/cmessages.c | 34 checkmate-1.5.2/checkmate/src/cmessages.h | 8 checkmate-1.5.2/checkmate/src/helper.c | 41 checkmate-1.5.2/checkmate/src/helper.h | 4 checkmate-1.5.2/checkmate/src/qassert.c | 415 +++++++++- checkmate-1.5.2/checkmate/src/qassert.h | 1 checkmate-1.5.2/checkmate/tests/testthat/test_anyMissing.r | 50 - checkmate-1.5.2/checkmate/tests/testthat/test_checkCharacter.r | 6 checkmate-1.5.2/checkmate/tests/testthat/test_checkClass.r | 8 checkmate-1.5.2/checkmate/tests/testthat/test_checkDataFrame.r | 2 checkmate-1.5.2/checkmate/tests/testthat/test_checkFactor.r | 12 checkmate-1.5.2/checkmate/tests/testthat/test_checkInteger.r | 4 checkmate-1.5.2/checkmate/tests/testthat/test_checkIntegerish.r | 3 checkmate-1.5.2/checkmate/tests/testthat/test_checkMatrix.r | 35 checkmate-1.5.2/checkmate/tests/testthat/test_checkNames.r | 5 checkmate-1.5.2/checkmate/tests/testthat/test_checkNumeric.r | 9 checkmate-1.5.2/checkmate/tests/testthat/test_checkVector.r | 18 checkmate-1.5.2/checkmate/tests/testthat/test_guessType.r |only checkmate-1.5.2/checkmate/tests/testthat/test_qtest.r | 8 checkmate-1.5.2/checkmate/tests/testthat/test_qtestr.r | 5 checkmate-1.5.2/checkmate/tests/testthat/test_wfwl.r |only 106 files changed, 1066 insertions(+), 373 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers
Diff between astrochron versions 0.4.1 dated 2015-03-17 and 0.4.2 dated 2015-03-19
astrochron-0.4.1/astrochron/R/FUNCTION-integratePower_v7.R |only astrochron-0.4.1/astrochron/R/FUNCTION-xplot_v3.R |only astrochron-0.4.2/astrochron/DESCRIPTION | 8 ++--- astrochron-0.4.2/astrochron/MD5 | 20 ++++++------- astrochron-0.4.2/astrochron/R/FUNCTION-integratePower_v8.R |only astrochron-0.4.2/astrochron/R/FUNCTION-xplot_v4.R |only astrochron-0.4.2/astrochron/data/modelA.rda |binary astrochron-0.4.2/astrochron/man/ar1etp.Rd | 2 - astrochron-0.4.2/astrochron/man/astrochron-package.Rd | 4 +- astrochron-0.4.2/astrochron/man/cb.Rd | 2 - astrochron-0.4.2/astrochron/man/integratePower.Rd | 3 - astrochron-0.4.2/astrochron/man/stepHeat.Rd | 4 +- astrochron-0.4.2/astrochron/man/surrogates.Rd | 4 +- 13 files changed, 24 insertions(+), 23 deletions(-)
Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and other
models as well. The package helps to organize scenarios (to avoid copy
and paste) and aims to improve readability and usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt
Diff between simecol versions 0.8-4 dated 2013-09-26 and 0.8-6 dated 2015-03-19
simecol-0.8-4/simecol/inst/doc/index.html |only simecol-0.8-4/simecol/vignettes/index.html |only simecol-0.8-6/simecol/DESCRIPTION | 21 simecol-0.8-6/simecol/MD5 | 50 simecol-0.8-6/simecol/R/approxTime1.R | 66 simecol-0.8-6/simecol/R/sEdit.R | 34 simecol-0.8-6/simecol/build/vignette.rds |binary simecol-0.8-6/simecol/data/CA.rda |binary simecol-0.8-6/simecol/data/chemostat.rda |binary simecol-0.8-6/simecol/data/conway.rda |binary simecol-0.8-6/simecol/data/diffusion.rda |binary simecol-0.8-6/simecol/data/lv.rda |binary simecol-0.8-6/simecol/data/lv3.rda |binary simecol-0.8-6/simecol/data/upca.rda |binary simecol-0.8-6/simecol/inst/NEWS | 9 simecol-0.8-6/simecol/inst/doc/a-simecol-introduction.R | 621 +++---- simecol-0.8-6/simecol/inst/doc/a-simecol-introduction.Rnw | 8 simecol-0.8-6/simecol/inst/doc/a-simecol-introduction.pdf |binary simecol-0.8-6/simecol/inst/doc/b-simecol-howtos.R | 986 ++++++------ simecol-0.8-6/simecol/inst/doc/b-simecol-howtos.pdf |binary simecol-0.8-6/simecol/inst/doc/examples/competition.R |only simecol-0.8-6/simecol/inst/doc/examples/diffusion_barrier.R |only simecol-0.8-6/simecol/man/conway.Rd | 1 simecol-0.8-6/simecol/man/fixParms.Rd | 1 simecol-0.8-6/simecol/man/sEdit.Rd | 3 simecol-0.8-6/simecol/man/simecol-package.Rd | 23 simecol-0.8-6/simecol/vignettes/a-simecol-introduction.Rnw | 8 simecol-0.8-6/simecol/vignettes/simecol.bib | 1 28 files changed, 924 insertions(+), 908 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect to perform bandwidth selection for the different procedures implemented, and rdplot to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico
Maintainer: Sebastian Calonico
Diff between rdrobust versions 0.70 dated 2014-10-26 and 0.80 dated 2015-03-19
DESCRIPTION | 26 ++++++--------------- MD5 | 28 +++++++++++----------- NAMESPACE | 9 +++++++ R/functions.R | 14 +++++++---- R/rdbinselect.R | 26 ++++++++++----------- R/rdbwselect.R | 46 +++++++++++++++++++------------------ R/rdplot.R | 45 +++++++++++++++++++----------------- R/rdrobust.R | 58 ++++++++++++++++++++++++----------------------- man/rdbinselect.Rd | 35 +++++++++------------------- man/rdbwselect.Rd | 31 +++++++++---------------- man/rdplot.Rd | 29 +++++++++-------------- man/rdrobust-internal.Rd | 6 ++-- man/rdrobust-package.Rd | 6 ++-- man/rdrobust.Rd | 31 +++++++++---------------- man/rdrobust_RDsenate.Rd | 6 ++-- 15 files changed, 188 insertions(+), 208 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function, variable labels, color themes, and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is also available as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with RStudio and knitr including generation of knitr instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing
Diff between lessR versions 3.2 dated 2015-02-25 and 3.3 dated 2015-03-19
lessR-3.2/lessR/R/reg.explain.R |only lessR-3.2/lessR/R/reg.z1Basic.R |only lessR-3.2/lessR/R/reg.z3Residual.R |only lessR-3.3/lessR/DESCRIPTION | 10 lessR-3.3/lessR/MD5 | 113 - lessR-3.3/lessR/NAMESPACE | 6 lessR-3.3/lessR/NEWS | 67 - lessR-3.3/lessR/R/ANOVAz1.R | 10 lessR-3.3/lessR/R/ANOVAz2.R | 5 lessR-3.3/lessR/R/BarChart.R | 1 lessR-3.3/lessR/R/Help.R | 2077 +++++++++++++++---------------- lessR-3.3/lessR/R/Histogram.R | 23 lessR-3.3/lessR/R/Logit.R | 10 lessR-3.3/lessR/R/Nest.R | 3 lessR-3.3/lessR/R/Read.R | 36 lessR-3.3/lessR/R/Regression.R | 285 +++- lessR-3.3/lessR/R/ScatterPlot.R | 8 lessR-3.3/lessR/R/Sort.R | 2 lessR-3.3/lessR/R/Subset.R | 2 lessR-3.3/lessR/R/SummaryStats.R | 118 + lessR-3.3/lessR/R/bc.zmain.R | 10 lessR-3.3/lessR/R/corScree.R | 13 lessR-3.3/lessR/R/cr.data.frame.R | 20 lessR-3.3/lessR/R/details.R | 6 lessR-3.3/lessR/R/dn.zmain.R | 4 lessR-3.3/lessR/R/dp.zmain.R | 12 lessR-3.3/lessR/R/hst.zmain.R | 45 lessR-3.3/lessR/R/logit.z4Pred.R | 12 lessR-3.3/lessR/R/pc.zmain.R | 2 lessR-3.3/lessR/R/plt.zmain.R | 16 lessR-3.3/lessR/R/print.outall.r |only lessR-3.3/lessR/R/print.outpiece.r |only lessR-3.3/lessR/R/reg.z1anvBasic.R |only lessR-3.3/lessR/R/reg.z1bckBasic.R |only lessR-3.3/lessR/R/reg.z1fitBasic.R |only lessR-3.3/lessR/R/reg.z1modelBasic.R |only lessR-3.3/lessR/R/reg.z2Relations.R | 212 +-- lessR-3.3/lessR/R/reg.z3dnResidual.R |only lessR-3.3/lessR/R/reg.z3resfitResidual.R |only lessR-3.3/lessR/R/reg.z3txtResidual.R |only lessR-3.3/lessR/R/reg.z4Pred.R | 90 - lessR-3.3/lessR/R/reg.z5Plot.R | 67 - lessR-3.3/lessR/R/reg.zknitr.R |only lessR-3.3/lessR/R/regPlot.R |only lessR-3.3/lessR/R/ss.zfactor.R | 200 ++ lessR-3.3/lessR/R/ss.znumeric.R | 159 +- lessR-3.3/lessR/R/tt.z1graph.R | 2 lessR-3.3/lessR/R/tt.z1group.R | 9 lessR-3.3/lessR/R/tt.z2group.R | 9 lessR-3.3/lessR/R/ttest.R | 21 lessR-3.3/lessR/R/zzz.R | 251 +++ lessR-3.3/lessR/man/BoxPlot.Rd | 2 lessR-3.3/lessR/man/Histogram.Rd | 33 lessR-3.3/lessR/man/LineChart.Rd | 2 lessR-3.3/lessR/man/Logit.Rd | 2 lessR-3.3/lessR/man/Recode.Rd | 27 lessR-3.3/lessR/man/Regression.Rd | 165 +- lessR-3.3/lessR/man/ScatterPlot.Rd | 2 lessR-3.3/lessR/man/SummaryStats.Rd | 22 lessR-3.3/lessR/man/Transform.Rd | 32 lessR-3.3/lessR/man/corCFA.Rd | 2 lessR-3.3/lessR/man/corProp.Rd | 2 lessR-3.3/lessR/man/print_outall.Rd |only lessR-3.3/lessR/man/print_outpiece.Rd |only lessR-3.3/lessR/man/regPlot.Rd |only lessR-3.3/lessR/man/set.Rd | 2 66 files changed, 2549 insertions(+), 1680 deletions(-)
More information about james.analysis at CRAN
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Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber
Maintainer: Bart Kranstauber
Diff between move versions 1.2.475 dated 2014-04-25 and 1.4.496 dated 2015-03-19
move-1.2.475/move/inst/unitTests/report.html |only move-1.2.475/move/inst/unitTests/report.txt |only move-1.2.475/move/inst/unitTests/reportSummary.txt |only move-1.2.475/move/inst/unitTests/runit.seglength.R |only move-1.4.496/move/ChangeLog | 67 ++ move-1.4.496/move/DESCRIPTION | 12 move-1.4.496/move/MD5 | 98 +-- move-1.4.496/move/NAMESPACE | 3 move-1.4.496/move/R/AAClass.R | 4 move-1.4.496/move/R/Summary.R | 2 move-1.4.496/move/R/WebImport.R | 30 - move-1.4.496/move/R/angle.R | 6 move-1.4.496/move/R/brownianbridgedyn.R | 335 ++++++------ move-1.4.496/move/R/brownianmotionvariancedyn.R | 9 move-1.4.496/move/R/contour.R | 2 move-1.4.496/move/R/corridor.R | 14 move-1.4.496/move/R/dBGB.R | 6 move-1.4.496/move/R/hrBootstrap.R | 66 +- move-1.4.496/move/R/interpolateTime.R | 4 move-1.4.496/move/R/move.R | 31 - move-1.4.496/move/R/move2ade.R | 2 move-1.4.496/move/R/moveStack.R | 2 move-1.4.496/move/R/nindiv.R |only move-1.4.496/move/R/sensor.R |only move-1.4.496/move/R/speed.R | 2 move-1.4.496/move/R/split.R | 7 move-1.4.496/move/R/time.R | 2 move-1.4.496/move/R/timelag.R | 47 + move-1.4.496/move/R/timestamps.R | 6 move-1.4.496/move/R/trackId.R | 5 move-1.4.496/move/build/vignette.rds |binary move-1.4.496/move/inst/doc/browseMovebank.pdf |binary move-1.4.496/move/inst/doc/move.R | 2 move-1.4.496/move/inst/doc/move.Rnw | 4 move-1.4.496/move/inst/doc/move.pdf |binary move-1.4.496/move/inst/extdata/createsRDataFile.R | 2 move-1.4.496/move/inst/extdata/move.RData |binary move-1.4.496/move/inst/unitTests/runit.interpolateTime.R | 3 move-1.4.496/move/inst/unitTests/runit.measures.R | 8 move-1.4.496/move/inst/unitTests/runit.move.R | 88 +-- move-1.4.496/move/inst/unitTests/runit.spTransform.R | 2 move-1.4.496/move/man/brownian.bridge.dyn.Rd | 2 move-1.4.496/move/man/move-package.Rd | 2 move-1.4.496/move/man/n.indiv.Rd |only move-1.4.496/move/man/searchMovebankStudies.Rd | 2 move-1.4.496/move/man/sensor.Rd |only move-1.4.496/move/man/split.Rd | 1 move-1.4.496/move/man/time.Rd | 6 move-1.4.496/move/man/time.lag.Rd | 13 move-1.4.496/move/man/timeLag.Rd |only move-1.4.496/move/man/timestamps.Rd | 3 move-1.4.496/move/man/trackId.Rd | 1 move-1.4.496/move/tests/testthat/test.brownian.bridge.dyn.R | 148 +++-- move-1.4.496/move/tests/testthat/test.seglength.R |only move-1.4.496/move/vignettes/move.Rnw | 4 55 files changed, 634 insertions(+), 419 deletions(-)
Title: Create Diagrams and Flowcharts Using R
Description: With the DiagrammeR package, you can create diagrams and flowcharts using R.
Markdown-like text is used to describe a diagram and, by doing this in R, we can also
add some R code into the mix and integrate these diagrams in the R console, through R
Markdown, and in shiny apps.
Author: knsv [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone
Diff between DiagrammeR versions 0.4 dated 2015-01-30 and 0.5 dated 2015-03-19
DiagrammeR-0.4/DiagrammeR/inst/DiagrammeR.png |only DiagrammeR-0.4/DiagrammeR/inst/DiagrammeR_flow_diagram.png |only DiagrammeR-0.4/DiagrammeR/inst/DiagrammeR_video_link.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_1.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_2.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_3.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_4.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_5.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_6.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_7a.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_7b.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_7c_neato.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_7d_twopi.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_7e_circo.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8a.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8b.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8c.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8d.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8e.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_8f.png |only DiagrammeR-0.4/DiagrammeR/inst/Example_9.gif |only DiagrammeR-0.4/DiagrammeR/inst/Graphviz_substitution.png |only DiagrammeR-0.4/DiagrammeR/inst/htmlwidgets/lib/mermaid/README.md |only DiagrammeR-0.5/DiagrammeR/DESCRIPTION | 16 DiagrammeR-0.5/DiagrammeR/MD5 | 60 -- DiagrammeR-0.5/DiagrammeR/NAMESPACE | 5 DiagrammeR-0.5/DiagrammeR/R/grViz.R | 91 +-- DiagrammeR-0.5/DiagrammeR/R/graphviz_export.R |only DiagrammeR-0.5/DiagrammeR/R/graphviz_nodes_edges_df.R |only DiagrammeR-0.5/DiagrammeR/R/graphviz_single_df.R |only DiagrammeR-0.5/DiagrammeR/R/mermaid.R | 4 DiagrammeR-0.5/DiagrammeR/R/spectools.R | 109 ++- DiagrammeR-0.5/DiagrammeR/R/x11_hex.R |only DiagrammeR-0.5/DiagrammeR/README.md | 300 +++++++--- DiagrammeR-0.5/DiagrammeR/inst/doc/DiagrammeR.html | 36 - DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/DiagrammeR.js | 144 ++-- DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/DiagrammeR.yaml | 5 DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/grViz.js | 16 DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/lib/chromatography |only DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.css |only DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.slim.min.js | 24 DiagrammeR-0.5/DiagrammeR/inst/htmlwidgets/lib/styles/styles.css | 4 DiagrammeR-0.5/DiagrammeR/man/exportSVG.Rd |only DiagrammeR-0.5/DiagrammeR/man/grViz.Rd | 22 DiagrammeR-0.5/DiagrammeR/man/graphviz_nodes_edges_df.Rd |only DiagrammeR-0.5/DiagrammeR/man/graphviz_single_df.Rd |only DiagrammeR-0.5/DiagrammeR/man/x11_hex.Rd |only 47 files changed, 512 insertions(+), 324 deletions(-)
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to
find biclusters in two-dimensional data: Cheng and Church,
Spectral, Plaid Model, Xmotifs and Bimax. In addition, the
package provides methods for data preprocessing (normalization
and discretisation), visualisation, and validation of bicluster
solutions.
Author: Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova,
Martin Sill, Roberto Theron, Luis Quintales, Friedrich
Leisch and Ewoud De Troyer.
Maintainer: Sebastian Kaiser
Diff between biclust versions 1.0.2 dated 2013-03-10 and 1.1.0 dated 2015-03-19
DESCRIPTION | 23 +++--- MD5 | 46 ++++++------- NAMESPACE | 5 - R/bicluster.r | 7 +- R/clustmember.r | 2 R/drawHeatmap2.r | 5 - R/jaccard.r | 142 ++++++++++++++++++++++++------------------- R/plaid.r | 55 +++++++++------- data/BicatYeast.rda |binary data/EisenYeast.rda |binary data/SyntrenEcoli.rda |binary man/BCPlaid.Rd | 6 - man/BCQuest.rd | 3 man/BCXmotifs.rd | 2 man/bubbleplot.Rd | 3 man/clustmember.rd | 8 +- man/diagnoseColRow.Rd | 3 man/diagnosticPlot.Rd | 3 man/ensemble.Rd | 3 man/jaccard.rd | 3 man/parallelCoordinates.Rd | 3 man/plaid.grid.Rd | 6 + man/writeBiclusterResults.Rd | 6 + src/rbimax.c | 14 +++- 24 files changed, 204 insertions(+), 144 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm and the generalized
backdoor criterion is implemented.
Author: Diego Colombo, Alain Hauser, Markus Kalisch, Martin Maechler
Maintainer: Markus Kalisch
Diff between pcalg versions 2.0-3 dated 2014-07-01 and 2.0-10 dated 2015-03-19
DESCRIPTION | 24 MD5 | 70 - NAMESPACE | 19 R/Aaux.R | 2 R/AllClasses.R | 6 R/pcalg.R | 2166 ++++++++++++++++++++++++++-------------- TODO | 3 build/vignette.rds |binary data/gmB.rda |binary data/gmD.rda |binary data/gmG.rda |binary data/gmI.rda |binary data/gmInt.rda |binary data/gmL.rda |binary man/EssGraph-class.Rd | 2 man/GaussL0penIntScore-class.Rd | 2 man/GaussL0penObsScore-class.Rd | 2 man/GaussParDAG-class.Rd | 2 man/ParDAG-class.Rd | 2 man/Score-class.Rd | 2 man/condIndFisherZ.Rd | 9 man/dag2essgraph.Rd | 2 man/fciPlus.Rd |only man/gds.Rd | 2 man/ges.Rd | 2 man/gies.Rd | 2 man/jointIda.Rd |only man/mat2targets.Rd | 2 man/r.gauss.pardag.Rd | 2 man/rmvnorm.ivent.Rd | 2 man/simy.Rd | 2 man/udag2pag.Rd | 4 man/udag2pdag.Rd | 7 src/Makevars.win | 12 src/greedy.cpp | 16 tests/test_dag2cpdag.R | 50 tests/test_fciPlus.R |only tests/test_jointIda.R |only 38 files changed, 1590 insertions(+), 826 deletions(-)
Title: Mann-Kendall Test, Seasonal and Regional Kendall Tests
Description: Contains function rkt which computes the Mann-Kendall test (MK) and the Seasonal and the Regional Kendall Tests for trend (SKT and RKT) and Theil-Sen's slope estimator.
Author: Aldo Marchetto
Maintainer: Aldo Marchetto
Diff between rkt versions 1.3 dated 2014-01-22 and 1.4 dated 2015-03-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/rkt.R | 34 +++++++++++++++++++++++++++++----- man/print.rkt.Rd | 3 ++- man/rkt-package.Rd | 16 +++++++++++----- man/rkt.Rd | 16 +++++++++++----- 7 files changed, 65 insertions(+), 27 deletions(-)
Title: Cluster Distances Through Trees
Description: Create a measure of inter-point dissimilarity useful
for clustering mixed data, and, optionally, perform the clustering.
Author: Sam Buttrey
Maintainer: Sam Buttrey
Diff between treeClust versions 0.2-2 dated 2015-02-20 and 1.0-0 dated 2015-03-19
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++++------ NAMESPACE | 6 ++++-- R/plot.treeClust.R |only R/summary.treeClust.R |only R/tcdist.R | 9 ++++++--- R/tcnewdata.R |only R/treeClust.R | 40 ++++++++++++++++++++-------------------- man/plot.treeClust.Rd |only man/summary.treeClust.Rd |only man/tcdist.Rd | 5 ++++- man/tcnewdata.Rd |only man/treeClust.Rd | 3 ++- 13 files changed, 52 insertions(+), 37 deletions(-)
Title: Data Analysis Using Rough Set and Fuzzy Rough Set Theories
Description: Implementations of algorithms for data analysis
based on the rough set theory (RST) and the fuzzy rough set theory (FRST). We
not only provide implementations for the basic concepts of RST and FRST but also
popular algorithms that derive from those theories. The methods included in the
package can be divided into several categories based on their functionality:
discretization, feature selection, instance selection, rule induction and classification
based on nearest neighbors. RST was introduced by Zdzisław Pawlak in 1982
as a sophisticated mathematical tool based on indiscernibility relations to
model and process imprecise or incomplete information. It works on
symbolic-valued datasets for tackling the data analysis problems. By using
the indiscernibility relation for objects/instances, RST does not require
additional parameters to analyze the data. FRST is an extension of RST. The
FRST combines concepts of vagueness and indiscernibility that are expressed
with fuzzy sets (as proposed by Zadeh, in 1965) and RST.
Author: Lala Septem Riza [aut],
Andrzej Janusz [aut],
Dominik Ślęzak [ctb],
Chris Cornelis [ctb],
Francisco Herrera [ctb],
Jose Manuel Benitez [ctb],
Christoph Bergmeir [ctb, cre],
Sebastian Stawicki [ctb]
Maintainer: Christoph Bergmeir
Diff between RoughSets versions 1.1-0 dated 2014-06-19 and 1.2-0 dated 2015-03-19
RoughSets-1.1-0/RoughSets/man/X.bestFirst.Rd |only RoughSets-1.1-0/RoughSets/man/X.nOfConflictsLog.Rd |only RoughSets-1.1-0/RoughSets/man/X.nOfConflictsSqrt.Rd |only RoughSets-1.2-0/RoughSets/DESCRIPTION | 56 RoughSets-1.2-0/RoughSets/MD5 | 164 - RoughSets-1.2-0/RoughSets/NAMESPACE | 16 RoughSets-1.2-0/RoughSets/R/BasicFuzzyRoughSets.R | 26 RoughSets-1.2-0/RoughSets/R/BasicRoughSets.OtherFuncCollections.R | 33 RoughSets-1.2-0/RoughSets/R/BasicRoughSets.R | 309 +- RoughSets-1.2-0/RoughSets/R/Discretization.R | 363 +-- RoughSets-1.2-0/RoughSets/R/FeatureSelection.OtherFuncCollections.R | 123 - RoughSets-1.2-0/RoughSets/R/FeatureSelection.R | 973 ++++++-- RoughSets-1.2-0/RoughSets/R/IOFunctions.R | 300 ++ RoughSets-1.2-0/RoughSets/R/InstanceSelection.OtherFuncCollections.R | 2 RoughSets-1.2-0/RoughSets/R/InstanceSelection.R | 14 RoughSets-1.2-0/RoughSets/R/MissingValue.R | 6 RoughSets-1.2-0/RoughSets/R/NearestNeigbour.OtherFuncCollections.R | 4 RoughSets-1.2-0/RoughSets/R/NearestNeigbour.R | 3 RoughSets-1.2-0/RoughSets/R/RcppExports.R |only RoughSets-1.2-0/RoughSets/R/RoughSets-package.R | 1083 +++++----- RoughSets-1.2-0/RoughSets/R/RuleInduction.OtherFuncCollections.R | 305 ++ RoughSets-1.2-0/RoughSets/R/RuleInduction.R | 588 ++++- RoughSets-1.2-0/RoughSets/demo/BasicConcept.RST.R | 5 RoughSets-1.2-0/RoughSets/demo/GettingStarted.A.R | 6 RoughSets-1.2-0/RoughSets/man/A.Introduction-RoughSets.Rd | 188 - RoughSets-1.2-0/RoughSets/man/B.Introduction-FuzzyRoughSets.Rd | 225 -- RoughSets-1.2-0/RoughSets/man/BC.IND.relation.FRST.Rd | 388 +-- RoughSets-1.2-0/RoughSets/man/BC.IND.relation.RST.Rd | 93 RoughSets-1.2-0/RoughSets/man/BC.LU.approximation.FRST.Rd | 521 +--- RoughSets-1.2-0/RoughSets/man/BC.LU.approximation.RST.Rd | 92 RoughSets-1.2-0/RoughSets/man/BC.discernibility.mat.FRST.Rd | 334 +-- RoughSets-1.2-0/RoughSets/man/BC.discernibility.mat.RST.Rd | 83 RoughSets-1.2-0/RoughSets/man/BC.positive.reg.FRST.Rd | 58 RoughSets-1.2-0/RoughSets/man/BC.positive.reg.RST.Rd | 84 RoughSets-1.2-0/RoughSets/man/C.FRNN.FRST.Rd | 136 - RoughSets-1.2-0/RoughSets/man/C.FRNN.O.FRST.Rd | 62 RoughSets-1.2-0/RoughSets/man/C.POSNN.FRST.Rd | 53 RoughSets-1.2-0/RoughSets/man/D.discretization.RST.Rd | 109 - RoughSets-1.2-0/RoughSets/man/D.discretize.equal.intervals.RST.Rd | 91 RoughSets-1.2-0/RoughSets/man/D.discretize.quantiles.RST.Rd | 85 RoughSets-1.2-0/RoughSets/man/D.global.discernibility.heuristic.RST.Rd | 125 - RoughSets-1.2-0/RoughSets/man/D.local.discernibility.matrix.RST.Rd | 100 RoughSets-1.2-0/RoughSets/man/D.max.discernibility.matrix.RST.Rd | 92 RoughSets-1.2-0/RoughSets/man/FS.DAAR.heuristic.RST.Rd |only RoughSets-1.2-0/RoughSets/man/FS.all.reducts.computation.Rd | 35 RoughSets-1.2-0/RoughSets/man/FS.feature.subset.computation.Rd | 55 RoughSets-1.2-0/RoughSets/man/FS.greedy.heuristic.reduct.RST.Rd | 150 - RoughSets-1.2-0/RoughSets/man/FS.greedy.heuristic.superreduct.RST.Rd | 79 RoughSets-1.2-0/RoughSets/man/FS.nearOpt.fvprs.FRST.Rd | 73 RoughSets-1.2-0/RoughSets/man/FS.one.reduct.computation.Rd | 30 RoughSets-1.2-0/RoughSets/man/FS.permutation.heuristic.reduct.RST.Rd | 92 RoughSets-1.2-0/RoughSets/man/FS.quickreduct.FRST.Rd | 381 +-- RoughSets-1.2-0/RoughSets/man/FS.quickreduct.RST.Rd | 81 RoughSets-1.2-0/RoughSets/man/FS.reduct.computation.Rd | 76 RoughSets-1.2-0/RoughSets/man/IS.FRIS.FRST.Rd | 111 - RoughSets-1.2-0/RoughSets/man/IS.FRPS.FRST.Rd | 95 RoughSets-1.2-0/RoughSets/man/MV.conceptClosestFit.Rd | 35 RoughSets-1.2-0/RoughSets/man/MV.deletionCases.Rd | 29 RoughSets-1.2-0/RoughSets/man/MV.globalClosestFit.Rd | 43 RoughSets-1.2-0/RoughSets/man/MV.missingValueCompletion.Rd | 53 RoughSets-1.2-0/RoughSets/man/MV.mostCommonVal.Rd | 28 RoughSets-1.2-0/RoughSets/man/MV.mostCommonValResConcept.Rd | 30 RoughSets-1.2-0/RoughSets/man/RI.AQRules.RST.Rd |only RoughSets-1.2-0/RoughSets/man/RI.CN2Rules.RST.Rd |only RoughSets-1.2-0/RoughSets/man/RI.GFRS.FRST.Rd | 137 - RoughSets-1.2-0/RoughSets/man/RI.LEM2Rules.RST.Rd |only RoughSets-1.2-0/RoughSets/man/RI.hybridFS.FRST.Rd | 75 RoughSets-1.2-0/RoughSets/man/RI.indiscernibilityBasedRules.RST.Rd | 91 RoughSets-1.2-0/RoughSets/man/RoughSetData.Rd | 216 - RoughSets-1.2-0/RoughSets/man/RoughSets-package.Rd | 666 ++---- RoughSets-1.2-0/RoughSets/man/SF.applyDecTable.Rd | 47 RoughSets-1.2-0/RoughSets/man/SF.asDecisionTable.Rd | 109 - RoughSets-1.2-0/RoughSets/man/SF.asFeatureSubset.Rd |only RoughSets-1.2-0/RoughSets/man/SF.read.DecisionTable.Rd | 44 RoughSets-1.2-0/RoughSets/man/X.entropy.Rd | 23 RoughSets-1.2-0/RoughSets/man/X.gini.Rd | 26 RoughSets-1.2-0/RoughSets/man/X.laplace.Rd |only RoughSets-1.2-0/RoughSets/man/X.nOfConflicts.Rd | 18 RoughSets-1.2-0/RoughSets/man/X.ruleStrength.Rd |only RoughSets-1.2-0/RoughSets/man/X.rulesCounting.Rd |only RoughSets-1.2-0/RoughSets/man/predict.RuleSetFRST.Rd | 37 RoughSets-1.2-0/RoughSets/man/predict.RuleSetRST.Rd | 106 RoughSets-1.2-0/RoughSets/man/print.FeatureSubset.Rd |only RoughSets-1.2-0/RoughSets/man/print.RuleSetRST.Rd |only RoughSets-1.2-0/RoughSets/man/summary.IndiscernibilityRelation.Rd | 20 RoughSets-1.2-0/RoughSets/man/summary.LowerUpperApproximation.Rd | 19 RoughSets-1.2-0/RoughSets/man/summary.PositiveRegion.Rd | 19 RoughSets-1.2-0/RoughSets/man/summary.RuleSetFRST.Rd | 37 RoughSets-1.2-0/RoughSets/man/summary.RuleSetRST.Rd | 26 RoughSets-1.2-0/RoughSets/src/RcppExports.cpp |only RoughSets-1.2-0/RoughSets/src/indiscernibility.cpp |only 91 files changed, 5494 insertions(+), 4996 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider
Diff between NSM3 versions 1.2 dated 2015-03-17 and 1.3 dated 2015-03-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/pFrd.R | 3 ++- data/goose.rda |binary man/rhythmicity.Rd | 2 +- 5 files changed, 10 insertions(+), 9 deletions(-)
Title: Create Plots from MCMC Output
Description: Functions for convenient plotting and viewing of MCMC output.
Author: S. McKay Curtis [aut, cre],
Ilya Goldin [ctb],
Evangelos Evangelou [ctb],
'sumtxt' from GitHub [ctb]
Maintainer: S. McKay Curtis
Diff between mcmcplots versions 0.4.1 dated 2012-11-03 and 0.4.2 dated 2015-03-19
DESCRIPTION | 28 ++++++++++++++++----------- MD5 | 48 +++++++++++++++++++++++++---------------------- NAMESPACE | 3 ++ NEWS | 8 +++++++ R/as.mcmc.bugs.R | 4 +-- R/as.mcmc.rjags.R | 2 - R/caterplot.R | 43 ++++++++++++++++++++++++++---------------- R/mcmcplot1.R | 3 +- R/rmeanplot.R |only R/rmeanplot1.R |only man/as.mcmc.bugs.Rd | 7 +++--- man/as.mcmc.rjags.Rd | 5 ++-- man/autplot1.Rd | 13 +++++++++--- man/caterplot.Rd | 22 +++++++++++++++------ man/caterpoints.Rd | 5 +++- man/denoverplot.Rd | 26 +++++++++++++++++-------- man/denoverplot1.Rd | 4 ++- man/denplot.Rd | 10 ++++++--- man/graypr.Rd | 6 ++++- man/mcmcplot.Rd | 14 ++++++++----- man/mcmcplot1.Rd | 4 +-- man/mcmcplots-package.Rd | 29 +++++++++++++++++++--------- man/mcmcplotsPalette.Rd | 5 +++- man/rmeanplot.Rd |only man/rmeanplot1.Rd |only man/traplot.Rd | 7 ++++-- man/traplot1.Rd | 5 +++- 27 files changed, 200 insertions(+), 101 deletions(-)
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington.
Maintainer: Chris Fraley
Diff between ensembleBMA versions 5.1 dated 2015-02-18 and 5.1.1 dated 2015-03-19
CHANGELOG | 9 ++++++--- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/quantileForecast.ensembleBMAgamma.R | 2 +- R/quantileForecast.ensembleBMAgamma0.R | 2 +- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: Bayesian Isotonic Regression with Bernstein Polynomials
Description: Provides functions for fitting Bayesian monotonic regression models to data.
Author: S. McKay Curtis
Maintainer: S. McKay Curtis
Diff between bisoreg versions 1.1 dated 2012-12-27 and 1.4 dated 2015-03-19
DESCRIPTION | 13 +++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 15 +++++++++++---- NEWS |only R/bisoreg.R | 2 +- R/nd2004.R | 45 +++++++++++++++++++++------------------------ man/as.mcmc.biso.Rd | 23 +++-------------------- man/aveslope.Rd | 33 ++++++++++++++++++++++++++------- man/bisoreg.Rd | 37 ++++++++++++++++++++++++------------- man/nd2004.Rd | 4 +--- 10 files changed, 103 insertions(+), 86 deletions(-)