Title: Tools for Creating Universal Numeric Fingerprints for Data
Diff between UNF versions 2.0 dated 2015-03-21 and 2.0.1 dated 2015-03-26
Description: Computes a universal numeric fingerprint (UNF) for an R data object. UNF is a cryptographic hash or signature that can be used to uniquely identify (a version of) a rectangular dataset, or a subset thereof. UNF can be used, in tandem with a DOI, to form a persistent citation to a versioned dataset.
Author: Thomas Leeper [aut, cre],
Micah Altman [aut]
Maintainer: Thomas Leeper
CHANGELOG | 105 ++++++++++++++++----------------
DESCRIPTION | 10 +--
MD5 | 16 ++--
R/unf5.R | 4 -
R/unf6.R | 4 -
inst/CITATION | 62 +++++++++---------
man/unf.Rd | 7 --
tests/testthat/test-unf6-common-tests.R | 4 -
tests/testthat/test-unf6-datetimes.R | 12 +--
9 files changed, 113 insertions(+), 111 deletions(-)
Title: Sampling Design for Spatially Explicit Capture-Recapture
Diff between secrdesign versions 2.2.2 dated 2015-01-11 and 2.3.0 dated 2015-03-26
Description: Tools are provided for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'.
Author: Murray Efford
Maintainer: Murray Efford
secrdesign-2.2.2/secrdesign/vignettes/secrdesign-fig1.pdf |only
secrdesign-2.2.2/secrdesign/vignettes/secrdesign-fig2.pdf |only
secrdesign-2.3.0/secrdesign/DESCRIPTION | 12
secrdesign-2.3.0/secrdesign/MD5 | 34 -
secrdesign-2.3.0/secrdesign/NEWS | 18
secrdesign-2.3.0/secrdesign/R/make.scenarios.R | 3
secrdesign-2.3.0/secrdesign/R/methods.R | 22
secrdesign-2.3.0/secrdesign/R/run.scenarios.R | 295 +++++-----
secrdesign-2.3.0/secrdesign/R/select.stats.R | 9
secrdesign-2.3.0/secrdesign/build/vignette.rds |binary
secrdesign-2.3.0/secrdesign/inst/doc/secrdesign-manual.pdf |binary
secrdesign-2.3.0/secrdesign/inst/doc/secrdesign-vignette.R | 20
secrdesign-2.3.0/secrdesign/inst/doc/secrdesign-vignette.Rmd | 52 -
secrdesign-2.3.0/secrdesign/inst/doc/secrdesign-vignette.pdf |binary
secrdesign-2.3.0/secrdesign/man/run.scenarios.Rd | 8
secrdesign-2.3.0/secrdesign/man/secrdesign-package.Rd | 4
secrdesign-2.3.0/secrdesign/man/select.stats.Rd | 10
secrdesign-2.3.0/secrdesign/vignettes/secrdesign-fig1.png |only
secrdesign-2.3.0/secrdesign/vignettes/secrdesign-fig2.png |only
secrdesign-2.3.0/secrdesign/vignettes/secrdesign-vignette.Rmd | 52 -
20 files changed, 304 insertions(+), 235 deletions(-)
Title: Robust Covariance Matrix Estimators
Diff between sandwich versions 2.3-2 dated 2014-08-24 and 2.3-3 dated 2015-03-26
Description: Model-robust standard error estimators for cross-sectional, time series, and longitudinal data.
Author: Thomas Lumley [aut],
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
NAMESPACE | 4 +++-
NEWS | 10 ++++++++++
R/estfun.R | 2 --
R/vcovHAC.R | 2 +-
build/vignette.rds |binary
data/Investment.rda |binary
data/PublicSchools.rda |binary
inst/doc/sandwich-OOP.pdf |binary
inst/doc/sandwich.Rnw | 2 +-
inst/doc/sandwich.pdf |binary
man/vcovOPG.Rd | 2 +-
tests/Examples/sandwich-Ex.Rout.save | 12 ++++++------
vignettes/sandwich.Rnw | 2 +-
15 files changed, 41 insertions(+), 31 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero/One Inflated
Beta Regression
Diff between zoib versions 1.2 dated 2015-02-18 and 1.2.1 dated 2015-03-26
Description: Fits beta regression and zero/one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu
Maintainer: Fang Liu
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
man/fixed01.Rd | 2 +-
man/joint.1z01.Rd | 12 ++++++------
man/joint.2z01.Rd | 2 +-
man/sep.1z01.Rd | 2 +-
man/sep.2z01.Rd | 2 +-
man/zoib-package.Rd | 4 ++--
man/zoib.Rd | 8 ++++----
9 files changed, 28 insertions(+), 28 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Diff between Surrogate versions 0.1-4 dated 2014-12-12 and 0.1-5 dated 2015-03-26
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a biomarker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst
DESCRIPTION | 9 -
MD5 | 89 +++++++----
NAMESPACE | 35 ++++
NEWS | 5
R/CausalDiagramBinBin.R | 96 ++++++------
R/FixedContContIT.r | 2
R/ICA.BinBin.Grid.Full.R | 138 ++++++++++++-----
R/ICA.BinBin.Grid.Sample.R | 290 +++++++++++++++++++++++++++++--------
R/ICA.Sample.ContCont.R |only
R/ICABinBin.R | 223 ++++++++++++++++++++++++----
R/ICABinBinCounterAssum.R |only
R/ICAContCont.R | 4
R/MICA.Sample.ContCont.R |only
R/MICAContCont.R | 2
R/MarginalProbs.R | 2
R/MinSurrContCont.R | 3
R/RandVec.R | 2
R/SPP.BinBin.R |only
R/SimDataCounterfactualsBinBin.R | 12 +
R/SimDataSTSBinBin.R | 12 +
R/SummaryITContCont.R | 2
R/SummaryMetaAnalyticMTSContCont.R | 2
R/SummaryMetaAnalyticSTSContCont.R | 1
R/SummarySPPBinBin.R |only
R/plot.InfoTheoretic.R | 4
R/plot.MetaAnalyticMTS.R | 11 +
R/plot.MetaAnalyticSTS.R | 1
R/plot_ICABinBin.R | 94 ++++++++++-
R/plot_SPPBinBin.R |only
R/summ.ICA.By.Mon.R |only
R/summary_ICABinBin.R | 13 +
data/Schizo_Bin.rda |only
data/Schizo_Bin_ST.rda |only
data/Schizo_Bin_ST2.rda |only
data/Schizo_PANSS.rda |only
man/ICA.BinBin.Grid.Full.Rd | 4
man/ICA.BinBin.Grid.Sample.Rd | 14 +
man/ICA.Sample.ContCont.Rd |only
man/ICABinBin.Rd | 16 +-
man/ICABinBinCounterAssum.Rd |only
man/ICAContCont.Rd | 4
man/MICA.Sample.ContCont.Rd |only
man/MICAContCont.Rd | 2
man/MinSurrContCont.Rd | 3
man/RandVec.Rd | 4
man/SPP.BinBin.Rd |only
man/Schizo.Rd | 6
man/Schizo_Bin.Rd |only
man/Schizo_Bin_ST.Rd |only
man/Schizo_Bin_ST2.Rd |only
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man/plot.ICABinBin.Rd | 7
man/plot.MetaAnalytic.Rd | 8 -
man/plot.SPPBinBin.Rd |only
man/summ.ICA.By.Mon.Rd |only
man/summary.gen.Rd | 4
56 files changed, 855 insertions(+), 269 deletions(-)
Title: Statistical Methods for the Randomized Response Technique
Diff between rr versions 1.2 dated 2015-03-21 and 1.3 dated 2015-03-26
Description: Enables researchers to conduct multivariate statistical analyses of survey data with randomized response technique items from several designs, including mirrored question, forced question, and unrelated question. This includes regression with the randomized response as the outcome and logistic regression with the randomized response item as a predictor. In addition, tools for conducting power analysis for designing randomized response items are included. The package implements methods described in Blair, Imai, and Zhou (2015) ''Design and Analysis of the Randomized Response Technique,'' Working paper available at
Author: Graeme Blair
Maintainer: Graeme Blair
ChangeLog | 3
DESCRIPTION | 8
MD5 | 18 +-
R/rr.R | 2
R/rrreg.predictor.R | 2
tests/testthat.R | 1
tests/testthat/test-bayes-mixed.R | 14 -
tests/testthat/test-bayes.R | 10 -
tests/testthat/test-power.R |only
tests/testthat/test-rrreg-predictor.R |only
tests/testthat/test-rrreg.R | 283 +---------------------------------
11 files changed, 41 insertions(+), 300 deletions(-)
Title: Visualizing the Performance of Scoring Classifiers
Diff between ROCR versions 1.0-6 dated 2015-03-22 and 1.0-7 dated 2015-03-26
Description: ROC graphs, sensitivity/specificity curves, lift charts,
and precision/recall plots are popular examples of trade-off
visualizations for specific pairs of performance measures. ROCR is a
flexible tool for creating cutoff-parameterized 2D performance curves
by freely combining two from over 25 performance measures (new
performance measures can be added using a standard interface).
Curves from different cross-validation or bootstrapping runs can be
averaged by different methods, and standard deviations, standard
errors or box plots can be used to visualize the variability across
the runs. The parameterization can be visualized by printing cutoff
values at the corresponding curve positions, or by coloring the
curve according to cutoff. All components of a performance plot can
be quickly adjusted using a flexible parameter dispatching
mechanism. Despite its flexibility, ROCR is easy to use, with only
three commands and reasonable default values for all optional
parameters.
Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Maintainer: Tobias Sing
DESCRIPTION | 45 +++++++++++++++++++++------------------------
MD5 | 16 +++++++++++-----
NEWS | 3 +++
data/ROCR.hiv.rda |binary
data/ROCR.simple.rda |binary
data/ROCR.xval.rda |binary
tools |only
7 files changed, 35 insertions(+), 29 deletions(-)
Title: Quantile-Based Spectral Analysis of Time Series
Diff between quantspec versions 1.0-2 dated 2014-11-21 and 1.0-3 dated 2015-03-26
Description: Methods to determine, smooth and plot quantile (i. e., Laplace or
copula) periodograms for univariate time series.
Author: Tobias Kley [aut, cre]
Maintainer: Tobias Kley
DESCRIPTION | 11 -
MD5 | 200 +++++++++++-----------
NAMESPACE | 2
NEWS | 8
R/Class-ClippedFT.R | 7
R/Class-FreqRep.R | 4
R/Class-MovingBlocks.R | 6
R/Class-QSpecQuantity.R | 2
R/Class-QuantilePG.R | 8
R/Class-QuantileSD.R | 6
R/Class-SmoothedPG.R | 7
R/models.R | 1
R/quantspec-package.R | 26 +-
build/vignette.rds |binary
inst/doc/quantspec.R | 160 ++++++++----------
inst/doc/quantspec.Rnw | 301 ++++++++++++++++++++--------------
inst/doc/quantspec.pdf |binary
man/BootPos-class.Rd | 2
man/ClippedFT-class.Rd | 9 -
man/ClippedFT-constructor.Rd | 2
man/FreqRep-class.Rd | 2
man/IntegrQuantileSD-class.Rd | 2
man/IntegrQuantileSD-constructor.Rd | 2
man/KernelWeight-class.Rd | 2
man/KernelWeight-constructor.Rd | 2
man/MovingBlocks-class.Rd | 2
man/MovingBlocks-constructor.Rd | 2
man/QRegEstimator-class.Rd | 2
man/QRegEstimator-constructor.Rd | 2
man/QSpecQuantity-class.Rd | 2
man/QuantilePG-class.Rd | 10 -
man/QuantilePG-constructor.Rd | 2
man/QuantileSD-class.Rd | 8
man/QuantileSD-constructor.Rd | 2
man/SmoothedPG-class.Rd | 2
man/SmoothedPG-constructor.Rd | 2
man/SpecDistrWeight-class.Rd | 2
man/SpecDistrWeight-constructor.Rd | 2
man/Weight-class.Rd | 2
man/closest.pos.Rd | 2
man/data-sp500.Rd | 2
man/data-wheatprices.Rd | 2
man/frequenciesValidator.Rd | 2
man/generics-accessors.Rd | 2
man/generics-associations.Rd | 2
man/generics-functions.Rd | 2
man/getB-FreqRep.Rd | 2
man/getBootPos-FreqRep.Rd | 2
man/getBw-KernelWeight.Rd | 2
man/getDescr-Weight.Rd | 2
man/getFreqRep-QuantilePG.Rd | 2
man/getFrequencies-FreqRep.Rd | 2
man/getFrequencies-QSpecQuantity.Rd | 2
man/getIsRankBased-FreqRep.Rd | 2
man/getLevels-FreqRep.Rd | 2
man/getLevels-QSpecQuantity.Rd | 2
man/getMeanPG-QuantileSD.Rd | 2
man/getN-QuantileSD.Rd | 2
man/getParallel-QRegEstimator.Rd | 2
man/getPointwiseCIs-SmoothedPG.Rd | 2
man/getPositions-MovingBlocks.Rd | 2
man/getQuantilePG-QuantileSD.Rd | 2
man/getQuantilePG-SmoothedPG.Rd | 2
man/getQuantileSD-IntegrQuantileSD.Rd | 2
man/getR-QuantileSD.Rd | 2
man/getSdBoot-SmoothedPG.Rd | 2
man/getSdNaive-SmoothedPG.Rd | 9 -
man/getStdError-QuantileSD.Rd | 2
man/getTs-QuantileSD.Rd | 2
man/getType-QuantileSD.Rd | 2
man/getValues-FreqRep.Rd | 2
man/getValues-IntegrQuantileSD.Rd | 2
man/getValues-KernelWeight.Rd | 2
man/getValues-QuantilePG.Rd | 2
man/getValues-QuantileSD.Rd | 2
man/getValues-SmoothedPG.Rd | 2
man/getValues-SpecDistrWeight.Rd | 2
man/getW-KernelWeight.Rd | 2
man/getWeight-SmoothedPG.Rd | 2
man/getWnj-KernelWeight.Rd | 2
man/getY-FreqRep.Rd | 2
man/increasePrecision-QuantileSD.Rd | 2
man/is.wholenumber.Rd | 2
man/kernels.Rd | 2
man/plot-FreqRep.Rd | 2
man/plot-IntegrQuantileSD.Rd | 2
man/plot-KernelWeight.Rd | 2
man/plot-QuantilePG.Rd | 2
man/plot-QuantileSD.Rd | 2
man/plot-SmoothedPG.Rd | 2
man/plot-SpecDistrWeight.Rd | 2
man/quantspec-defunct.Rd | 2
man/quantspec-package.Rd | 28 +--
man/timeSeriesValidator.Rd | 2
man/ts-models-AR1.Rd | 2
man/ts-models-AR2.Rd | 2
man/ts-models-ARCH1.Rd | 2
man/ts-models-QAR1.Rd | 2
man/ts-models.Rd | 3
vignettes/quantspec-refs.bib | 52 +++--
vignettes/quantspec.Rnw | 301 ++++++++++++++++++++--------------
101 files changed, 740 insertions(+), 581 deletions(-)
Title: Create a Mini Version of CRAN Containing Only Selected Packages
Diff between miniCRAN versions 0.1-1 dated 2014-10-01 and 0.2.2 dated 2015-03-26
Description: Makes it possible to create an internally consistent
repository consisting of selected packages from CRAN-like repositories.
The user specifies a set of desired packages, and miniCRAN recursively
reads the dependency tree for these packages, then downloads only this
subset. The user can then install packages from this repository directly,
rather than from CRAN. This is useful in production settings, e.g. server
behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut],
Andrie de Vries [aut, cre],
Alex Chubaty [ctb]
Maintainer: Andrie de
Vries
miniCRAN-0.1-1/miniCRAN/inst/doc/miniCRAN.R |only
miniCRAN-0.1-1/miniCRAN/inst/doc/miniCRAN.html |only
miniCRAN-0.1-1/miniCRAN/inst/doc/miniCRAN.rmd |only
miniCRAN-0.1-1/miniCRAN/inst/examples/example_addPackage.R |only
miniCRAN-0.1-1/miniCRAN/man/addPackageGithub.Rd |only
miniCRAN-0.1-1/miniCRAN/vignettes/figure/makeDepGraph.png |only
miniCRAN-0.1-1/miniCRAN/vignettes/figure/so-tags.png |only
miniCRAN-0.1-1/miniCRAN/vignettes/miniCRAN.rmd |only
miniCRAN-0.2.2/miniCRAN/DESCRIPTION | 41 +-
miniCRAN-0.2.2/miniCRAN/MD5 | 88 ++--
miniCRAN-0.2.2/miniCRAN/NAMESPACE | 13
miniCRAN-0.2.2/miniCRAN/NEWS | 28 +
miniCRAN-0.2.2/miniCRAN/R/addPackages.R | 192 ++++++----
miniCRAN-0.2.2/miniCRAN/R/getCranDescription.R | 9
miniCRAN-0.2.2/miniCRAN/R/github-functions.R |only
miniCRAN-0.2.2/miniCRAN/R/helpers.R |only
miniCRAN-0.2.2/miniCRAN/R/makeDepGraph.R | 54 +-
miniCRAN-0.2.2/miniCRAN/R/makeRepo.R | 116 +++---
miniCRAN-0.2.2/miniCRAN/R/minicran-package.R | 45 +-
miniCRAN-0.2.2/miniCRAN/R/pkgDep.R | 112 ++++-
miniCRAN-0.2.2/miniCRAN/R/plot.pkgDepGraph.R | 58 +--
miniCRAN-0.2.2/miniCRAN/R/testSuiteFunctions.R |only
miniCRAN-0.2.2/miniCRAN/R/updatePackages.R |only
miniCRAN-0.2.2/miniCRAN/R/zzz.R | 4
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miniCRAN-0.2.2/miniCRAN/inst/doc/miniCRAN-dependency-graph.html |only
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miniCRAN-0.2.2/miniCRAN/inst/examples/example_addPackageListingGithub.R |only
miniCRAN-0.2.2/miniCRAN/inst/examples/example_checkVersions.R |only
miniCRAN-0.2.2/miniCRAN/inst/examples/example_updatePackages.R |only
miniCRAN-0.2.2/miniCRAN/man/addOldPackage.Rd |only
miniCRAN-0.2.2/miniCRAN/man/addPackage.Rd |only
miniCRAN-0.2.2/miniCRAN/man/addPackageListingGithub.Rd |only
miniCRAN-0.2.2/miniCRAN/man/basePkgs.Rd | 6
miniCRAN-0.2.2/miniCRAN/man/checkVersions.Rd |only
miniCRAN-0.2.2/miniCRAN/man/cranJuly2014.Rd | 3
miniCRAN-0.2.2/miniCRAN/man/getCranDescription.Rd | 5
miniCRAN-0.2.2/miniCRAN/man/makeDepGraph.Rd | 10
miniCRAN-0.2.2/miniCRAN/man/makeLibrary.Rd | 3
miniCRAN-0.2.2/miniCRAN/man/makeRepo.Rd | 71 ++-
miniCRAN-0.2.2/miniCRAN/man/miniCRAN-package.Rd | 45 +-
miniCRAN-0.2.2/miniCRAN/man/pkgAvail.Rd | 14
miniCRAN-0.2.2/miniCRAN/man/pkgDep.Rd | 20 -
miniCRAN-0.2.2/miniCRAN/man/pkgDepTools.Rd | 3
miniCRAN-0.2.2/miniCRAN/man/plot.pkgDepGraph.Rd | 10
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miniCRAN-0.2.2/miniCRAN/tests/testthat/test-2-makeDepGraph.R | 59 ++-
miniCRAN-0.2.2/miniCRAN/tests/testthat/test-3-makeRepo.R | 138 +------
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64 files changed, 673 insertions(+), 474 deletions(-)
Title: Mazama Science Spatial Data Download and Utility Functions
Diff between MazamaSpatialUtils versions 0.2.2 dated 2015-03-01 and 0.2.3 dated 2015-03-26
More information about MazamaSpatialUtils at CRAN
Description: A suite of conversion scripts to create internally standardized
spatial polygons dataframes. Utility scripts use these datasets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Will Leahy [aut],
Henry Nguyen [aut]
Maintainer: Jonathan Callahan
DESCRIPTION | 6 ++--
MD5 | 60 ++++++++++++++++++++++-----------------------
R/MazamaSpatialUtils.R | 15 ++++++++---
R/getCountry.R | 4 +--
R/getCountryCode.R | 4 +--
R/getCountryName.R | 4 +--
R/getState.R | 4 +--
R/getStateCode.R | 4 +--
R/getStateName.R | 4 +--
R/getTimezone.R | 4 +--
R/getUSCounty.R | 4 +--
R/getVariable.R | 2 -
R/organizePolygons.R | 2 -
build/vignette.rds |binary
data/SimpleCountries.RData |binary
data/SimpleTimezones.RData |binary
inst/doc/introduction.html | 4 +--
man/MazamaSpatialUtils.Rd | 5 +++
man/codeToState.Rd | 2 -
man/getCountry.Rd | 4 +--
man/getCountryCode.Rd | 4 +--
man/getCountryName.Rd | 4 +--
man/getState.Rd | 4 +--
man/getStateCode.Rd | 4 +--
man/getStateName.Rd | 4 +--
man/getTimezone.Rd | 4 +--
man/getUSCounty.Rd | 4 +--
man/getVariable.Rd | 2 -
man/organizePolygons.Rd | 2 -
man/stateToCode.Rd | 2 -
tests/testthat/test1.R | 2 -
31 files changed, 89 insertions(+), 79 deletions(-)
Permanent link
Title: Binary Classifier Interpretation Functions
Diff between interpretR versions 0.2.0 dated 2014-12-19 and 0.2.1 dated 2015-03-26
Description: Compute permutation- based performance measures and create
partial dependence plots for (cross-validated) randomForest and ada models.
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings
DESCRIPTION | 12 +--
MD5 | 14 +--
R/parDepPlot.R | 164 +++++++++++++++++++++++++++++++++++++++++++---
R/variableImportance.R | 3
inst/NEWS | 7 +
man/interpretR-package.Rd | 8 +-
man/parDepPlot.Rd | 14 ++-
man/variableImportance.Rd | 3
8 files changed, 188 insertions(+), 37 deletions(-)
Title: Seasonal Adjustment by Frequency Analysis
Diff between descomponer versions 1.1 dated 2014-11-12 and 1.2 dated 2015-03-26
Description: Decompose a time series into seasonal, trend and irregular components using transformations to amplitude-frequency domain.
Author: Francisco Parra
Maintainer: Francisco Parra
DESCRIPTION | 10 +-
MD5 | 36 ++++---
R/MW.R |only
R/cdf.R | 44 +--------
R/descomponer.R | 135 ++++++++++------------------
R/gdescomponer.R | 28 +----
R/gdf.R | 37 -------
R/gdt.R | 37 +------
R/gperiodograma.R | 2
build/vignette.rds |binary
inst/doc/descomponer_texto.R | 3
inst/doc/descomponer_texto.Rnw | 7 -
inst/doc/descomponer_texto.pdf |binary
man/MW.Rd |only
man/descomponer.rd | 18 +--
man/gdescomponer.rd | 6 -
vignettes/descomponer_texto-concordance.tex | 2
vignettes/descomponer_texto.Rnw | 7 -
vignettes/figure |only
19 files changed, 125 insertions(+), 247 deletions(-)
Title: Analysis and Search of Crossover Designs
Diff between Crossover versions 0.1-13 dated 2014-10-31 and 0.1-14 dated 2015-03-26
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
DESCRIPTION | 8 -
MD5 | 67 ++++++-----
NAMESPACE | 2
R/buildSummary.R | 2
R/contrMat.R | 113 +++++++++++++++++--
R/doRUnitTests.R | 2
R/general.carryover.R | 31 -----
R/order.R |only
build/vignette.rds |binary
data/exampleSearchResults2t.rda |only
inst/doc/Crossover.R | 77 ++++++++++++
inst/doc/Crossover.pdf |binary
inst/java/crossover.jar |binary
inst/unitTests/runit.efficiency.R | 2
java/org/mutoss/gui/AlgorithmPanel.java | 7 +
java/org/mutoss/gui/CrossDes.java | 23 ++-
java/org/mutoss/gui/CrossoverGUI.java | 5
java/org/mutoss/gui/Design.java | 4
java/org/mutoss/gui/DesignSelectionPanel.java | 6 -
java/org/mutoss/gui/FillTableWorker.java | 82 +++++++------
java/org/mutoss/gui/RCallServicesREngineWrapper.java | 5
man/CrossoverDesign-class.Rd | 3
man/CrossoverGUI.Rd | 3
man/CrossoverSearchResult-class.Rd | 3
man/buildSummaryTable.Rd | 3
man/canonicalOrder.Rd |only
man/contrMat2.Rd |only
man/design.efficiency.Rd | 3
man/general.carryover.Rd | 3
man/getDesign-methods.Rd | 3
man/getModelNr.Rd | 3
man/plot-methods.Rd | 3
man/rcd.Rd | 3
man/rcdMatrix.Rd | 3
man/resultL.Rd |only
man/searchCrossOverDesign.Rd | 3
vignettes/childs/Search.Rnw | 110 ++++++++++++++++++
37 files changed, 435 insertions(+), 147 deletions(-)
Title: Simulation of Simple and Complex Survival Data
Diff between survsim versions 1.1.2 dated 2014-07-23 and 1.1.3 dated 2015-03-26
Description: Simulation of simple and complex survival data including recurrent and multiple events and competing risks.
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL) and Albert Navarro (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler
DESCRIPTION | 12 +++---
MD5 | 42 ++++++++++-----------
NAMESPACE | 10 ++++-
R/crisk.ncens.sim.R | 59 +++++++++++++++++++++---------
R/crisk.sim.R | 29 ++++++++++++---
R/mult.ev.ncens.sim.R | 75 ++++++++++++++++++++++++++-------------
R/mult.ev.sim.R | 29 ++++++++++++---
R/print.summary.crisk.data.sim.R | 2 -
R/rec.ev.cens.sim.R | 47 +++++++++++++++++-------
R/rec.ev.ncens.sim.R | 43 ++++++++++++++++------
R/rec.ev.sim.R | 28 +++++++++++---
R/simple.ev.sim.R | 49 ++++++++++++++-----------
R/simple.surv.sim.R | 29 ++++++++++++---
R/summary.crisk.data.sim.R | 5 --
inst/CITATION | 4 +-
man/accum.Rd | 4 +-
man/crisk.sim.Rd | 16 ++++----
man/mult.ev.sim.Rd | 17 ++++----
man/rec.ev.sim.Rd | 20 +++++-----
man/simple.surv.sim.Rd | 14 +++----
man/survsim-internal.Rd | 10 ++---
man/survsim-package.Rd | 6 +--
22 files changed, 362 insertions(+), 188 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Diff between nodiv versions 1.0.2 dated 2015-03-05 and 1.0.3 dated 2015-03-26
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard
DESCRIPTION | 14 +-
MD5 | 38 +++--
NAMESPACE | 11 +
R/Add_to_data_object.R |only
R/General_figure_functions.R | 61 +++++++--
R/Methods_for_data_objects.R | 262 ++++++++++++++++++++++++++++++++++-------
R/Methods_for_result_objects.R | 8 -
R/Node_based_analysis.R | 33 ++++-
R/Nodesig_function.R | 8 -
R/Prepare_data.R | 33 ++---
R/colors.R |only
data/coquettes.rda |binary
man/Nspecies.Rd | 11 +
man/add_sitestat.Rd |only
man/add_species_stat.Rd |only
man/basal_node.Rd | 5
man/distrib_data.Rd | 7 -
man/nodiv-package.Rd | 4
man/occurrences.Rd |only
man/plotSOS.Rd | 6
man/plot_nodes_phylo.Rd | 2
man/plot_points.Rd | 12 -
man/update_object.Rd |only
23 files changed, 388 insertions(+), 127 deletions(-)
Title: Manage Time Series with R and PostgreSQL
Diff between timeseriesdb versions 0.1 dated 2014-11-26 and 0.2 dated 2015-03-26
Description: Store and organize a large amount of low frequency time series data.
The package was designed to manage a large catalog of official statistics which are
typically published on monthly, quarterly or yearly basis. Thus timeseriesdb is
optimized to handle a large number of lower frequency time series as opposed to a
smaller amount of high frequency time series such as real time data from measuring devices.
Hence timeseriesdb provides the opportunity to store extensive multi-lingual
meta information. The package also provides a web GUI to explore the underlying
PostgreSQL database interactively.
Author: "Matthias Bannert
Maintainer: 'Matthias Bannert'
timeseriesdb-0.1/timeseriesdb/man/depth.Rd |only
timeseriesdb-0.2/timeseriesdb/DESCRIPTION | 31 +-
timeseriesdb-0.2/timeseriesdb/MD5 | 83 +++++--
timeseriesdb-0.2/timeseriesdb/NAMESPACE | 37 +++
timeseriesdb-0.2/timeseriesdb/NEWS |only
timeseriesdb-0.2/timeseriesdb/R/addMetaInformation.R | 59 +++--
timeseriesdb-0.2/timeseriesdb/R/createConObj.R |only
timeseriesdb-0.2/timeseriesdb/R/createHstore.R | 61 ++---
timeseriesdb-0.2/timeseriesdb/R/dbExplorerUtils.R |only
timeseriesdb-0.2/timeseriesdb/R/deleteTimeSeries.R | 4
timeseriesdb-0.2/timeseriesdb/R/exploreDb.R |only
timeseriesdb-0.2/timeseriesdb/R/exportTsList.R |only
timeseriesdb-0.2/timeseriesdb/R/getMeta.R | 11 -
timeseriesdb-0.2/timeseriesdb/R/importTsList.R |only
timeseriesdb-0.2/timeseriesdb/R/plotMethod.R |only
timeseriesdb-0.2/timeseriesdb/R/print_methods.R | 3
timeseriesdb-0.2/timeseriesdb/R/quickHandleOps.R |only
timeseriesdb-0.2/timeseriesdb/R/readMetaInformation.R | 71 ++++--
timeseriesdb-0.2/timeseriesdb/R/readTimeseries.R | 99 ++++-----
timeseriesdb-0.2/timeseriesdb/R/resolveOverlap.R |only
timeseriesdb-0.2/timeseriesdb/R/searchHstore.R |only
timeseriesdb-0.2/timeseriesdb/R/setAttrListWise.R |only
timeseriesdb-0.2/timeseriesdb/R/storeMetaInformation.R | 64 ++++--
timeseriesdb-0.2/timeseriesdb/R/storeTimeseries.R | 126 +++++++-----
timeseriesdb-0.2/timeseriesdb/R/transactionUtils.R |only
timeseriesdb-0.2/timeseriesdb/R/tsSetFunctions.R |only
timeseriesdb-0.2/timeseriesdb/R/utils.R | 22 ++
timeseriesdb-0.2/timeseriesdb/README.md | 28 ++
timeseriesdb-0.2/timeseriesdb/inst/sql/createTable.sql | 24 +-
timeseriesdb-0.2/timeseriesdb/inst/sql/ts_data_function.sql |only
timeseriesdb-0.2/timeseriesdb/inst/sql/upsert.sql | 14 -
timeseriesdb-0.2/timeseriesdb/man/activateTsSet.Rd |only
timeseriesdb-0.2/timeseriesdb/man/addMetaInformation.Rd | 18 +
timeseriesdb-0.2/timeseriesdb/man/createChoices.Rd |only
timeseriesdb-0.2/timeseriesdb/man/createConObj.Rd |only
timeseriesdb-0.2/timeseriesdb/man/createHstore.Rd | 10
timeseriesdb-0.2/timeseriesdb/man/createUI.Rd |only
timeseriesdb-0.2/timeseriesdb/man/dbIsValid-methods.Rd |only
timeseriesdb-0.2/timeseriesdb/man/deactivateTsSet.Rd |only
timeseriesdb-0.2/timeseriesdb/man/deleteTimeSeries.Rd | 8
timeseriesdb-0.2/timeseriesdb/man/exploreDb.Rd |only
timeseriesdb-0.2/timeseriesdb/man/exportTsList.Rd |only
timeseriesdb-0.2/timeseriesdb/man/getListDepth.Rd |only
timeseriesdb-0.2/timeseriesdb/man/getMeta.Rd | 11 -
timeseriesdb-0.2/timeseriesdb/man/importTsList.Rd |only
timeseriesdb-0.2/timeseriesdb/man/listTsSets.Rd |only
timeseriesdb-0.2/timeseriesdb/man/loadTsSet.Rd |only
timeseriesdb-0.2/timeseriesdb/man/plotMethods.Rd |only
timeseriesdb-0.2/timeseriesdb/man/quickHandleOps.Rd |only
timeseriesdb-0.2/timeseriesdb/man/readMetaInformation.Rd | 27 +-
timeseriesdb-0.2/timeseriesdb/man/readTimeSeries.Rd | 19 -
timeseriesdb-0.2/timeseriesdb/man/resolveOverlap.Rd |only
timeseriesdb-0.2/timeseriesdb/man/searchHstore.Rd |only
timeseriesdb-0.2/timeseriesdb/man/searchKeys.Rd |only
timeseriesdb-0.2/timeseriesdb/man/setAttrListWise.Rd |only
timeseriesdb-0.2/timeseriesdb/man/storeMetaInformation.Rd | 18 +
timeseriesdb-0.2/timeseriesdb/man/storeTimeSeries.Rd | 23 +-
timeseriesdb-0.2/timeseriesdb/man/storeTsSet.Rd |only
timeseriesdb-0.2/timeseriesdb/man/transactionUtils.Rd |only
timeseriesdb-0.2/timeseriesdb/man/zooLikeDateConvert.Rd | 3
60 files changed, 562 insertions(+), 312 deletions(-)
Title: A Server-Side File System Viewer For Shiny
Diff between shinyFiles versions 0.5.0 dated 2015-01-30 and 0.6.0 dated 2015-03-26
Description: Provides functionality for client-side navigation of
the server side file system in shiny apps. In case the app is running
locally this gives the user direct access to the file system without the
need to "download" files to a temporary location. Both file and folder
selection as well as file saving is available.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen
shinyFiles-0.5.0/shinyFiles/inst/www/bootstrap.min.css |only
shinyFiles-0.5.0/shinyFiles/man/parseFilePaths.Rd |only
shinyFiles-0.5.0/shinyFiles/man/shinyFileChoose.Rd |only
shinyFiles-0.5.0/shinyFiles/man/shinyFilesButton.Rd |only
shinyFiles-0.6.0/shinyFiles/DESCRIPTION | 17
shinyFiles-0.6.0/shinyFiles/MD5 | 39
shinyFiles-0.6.0/shinyFiles/NAMESPACE | 7
shinyFiles-0.6.0/shinyFiles/R/aaa.R | 78
shinyFiles-0.6.0/shinyFiles/R/dirchoose.R |only
shinyFiles-0.6.0/shinyFiles/R/filechoose.R | 286 -
shinyFiles-0.6.0/shinyFiles/R/filesave.R |only
shinyFiles-0.6.0/shinyFiles/README.md | 8
shinyFiles-0.6.0/shinyFiles/inst/example/server.R | 9
shinyFiles-0.6.0/shinyFiles/inst/example/ui.R | 70
shinyFiles-0.6.0/shinyFiles/inst/example/www |only
shinyFiles-0.6.0/shinyFiles/inst/www/icons/Icons16x16/drive.png |only
shinyFiles-0.6.0/shinyFiles/inst/www/icons/Icons32x32/drive.png |only
shinyFiles-0.6.0/shinyFiles/inst/www/shinyFiles.js | 1606 ++++++++--
shinyFiles-0.6.0/shinyFiles/inst/www/styles.css | 207 +
shinyFiles-0.6.0/shinyFiles/man/dirCreator.Rd |only
shinyFiles-0.6.0/shinyFiles/man/dirGetter.Rd |only
shinyFiles-0.6.0/shinyFiles/man/formatFiletype.Rd |only
shinyFiles-0.6.0/shinyFiles/man/getVolumes.Rd | 2
shinyFiles-0.6.0/shinyFiles/man/shinyFiles-buttons.Rd |only
shinyFiles-0.6.0/shinyFiles/man/shinyFiles-observers.Rd |only
shinyFiles-0.6.0/shinyFiles/man/shinyFiles-parsers.Rd |only
shinyFiles-0.6.0/shinyFiles/man/shinyFilesExample.Rd | 17
shinyFiles-0.6.0/shinyFiles/man/traverseDirs.Rd |only
shinyFiles-0.6.0/shinyFiles/man/updateChildren.Rd |only
29 files changed, 1866 insertions(+), 480 deletions(-)
Title: Miscellaneous Tools for Reproducible Research
Diff between repmis versions 0.4 dated 2015-01-23 and 0.4.2 dated 2015-03-26
Description: Tools to load R packages
and automatically generate BibTeX files citing them as well as load
plain-text and Excel formatted data stored on Dropbox, GitHub, and from
other sources.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud
DESCRIPTION | 15 ++++++++-------
MD5 | 18 +++++++++---------
NAMESPACE | 1 -
NEWS | 11 +++++++++++
R/source_DropboxData.R | 8 +++-----
R/source_XlsxData.R | 26 +++++++++++++++++---------
R/source_data.R | 6 ++----
README.md | 2 +-
man/source_DropboxData.Rd | 2 +-
man/source_XlsxData.Rd | 6 +++---
10 files changed, 55 insertions(+), 40 deletions(-)
Title: GUI for Cohen's and Fleiss' Kappa
Diff between KappaGUI versions 1.1 dated 2013-01-30 and 1.2 dated 2015-03-26
Description: Offers a complete and interactive GUI to work out Cohen's and Fleiss' Kappa.
Author: Frederic Santos
Maintainer: Frederic Santos
DESCRIPTION | 16 ++++++++--------
MD5 | 12 ++++++------
NAMESPACE | 4 +++-
R/Sel_procedure.R | 2 +-
R/StartKappa.R | 25 +++++++++++++++++--------
R/datafile_details.R | 2 +-
man/KappaGUI-package.Rd | 8 +++++---
7 files changed, 41 insertions(+), 28 deletions(-)