Title: Creates a Model Matrix via Feature Hashing with a Formula
Interface
Diff between FeatureHashing versions 0.8 dated 2015-01-01 and 0.9 dated 2015-03-29
More information about FeatureHashing at CRAN
Description: Feature hashing, also called as the hashing trick, is a method to transform
features of a instance to a vector. Thus, it is a method to transform a real dataset to a matrix.
Without looking up the indices in an associative array,
it applies a hash function to the features and uses their hash values as indices directly.
The method of feature hashing in this package was proposed in Weinberger et al. (2009).
The hashing algorithm is the murmurhash3 from the digest package.
Please see the README in https://github.com/wush978/FeatureHashing for more information.
Author: Wush Wu [aut, cre],
Michael Benesty [aut, ctb]
Maintainer: Wush Wu
FeatureHashing-0.8/FeatureHashing/R/tag.R |only
FeatureHashing-0.8/FeatureHashing/man/tag.Rd |only
FeatureHashing-0.8/FeatureHashing/src/tag.cpp |only
FeatureHashing-0.8/FeatureHashing/src/tag.h |only
FeatureHashing-0.9/FeatureHashing/Changelog | 23
FeatureHashing-0.9/FeatureHashing/DESCRIPTION | 36 -
FeatureHashing-0.9/FeatureHashing/LICENSE |only
FeatureHashing-0.9/FeatureHashing/MD5 | 72 +-
FeatureHashing-0.9/FeatureHashing/NAMESPACE | 12
FeatureHashing-0.9/FeatureHashing/R/RcppExports.R | 36 -
FeatureHashing-0.9/FeatureHashing/R/hash.mapping.R |only
FeatureHashing-0.9/FeatureHashing/R/hash.size.R |only
FeatureHashing-0.9/FeatureHashing/R/hashed.model.matrix.R | 240 ++++++--
FeatureHashing-0.9/FeatureHashing/R/simulate.split.R |only
FeatureHashing-0.9/FeatureHashing/R/zzz.R | 52 +
FeatureHashing-0.9/FeatureHashing/README.md | 231 +++-----
FeatureHashing-0.9/FeatureHashing/data/ipinyou.rda |only
FeatureHashing-0.9/FeatureHashing/inst/ftprl.R |only
FeatureHashing-0.9/FeatureHashing/man/CSCMatrix-class.Rd | 3
FeatureHashing-0.9/FeatureHashing/man/hash.mapping.Rd |only
FeatureHashing-0.9/FeatureHashing/man/hash.size.Rd |only
FeatureHashing-0.9/FeatureHashing/man/hashed.model.matrix.Rd | 197 +++++--
FeatureHashing-0.9/FeatureHashing/man/intToRaw.Rd |only
FeatureHashing-0.9/FeatureHashing/man/ipinyou.Rd |only
FeatureHashing-0.9/FeatureHashing/man/simulate.split.Rd |only
FeatureHashing-0.9/FeatureHashing/man/test.tag.Rd | 8
FeatureHashing-0.9/FeatureHashing/src/RcppExports.cpp | 266 ++++-----
FeatureHashing-0.9/FeatureHashing/src/as.cpp | 18
FeatureHashing-0.9/FeatureHashing/src/digest.c | 18
FeatureHashing-0.9/FeatureHashing/src/digestlocal.h | 10
FeatureHashing-0.9/FeatureHashing/src/hash_internal.cpp | 26
FeatureHashing-0.9/FeatureHashing/src/hashed_model_matrix.cpp | 72 ++
FeatureHashing-0.9/FeatureHashing/src/intToRaw.cpp |only
FeatureHashing-0.9/FeatureHashing/src/product.cpp | 18
FeatureHashing-0.9/FeatureHashing/src/split.cpp |only
FeatureHashing-0.9/FeatureHashing/src/split.h |only
FeatureHashing-0.9/FeatureHashing/src/subsetting.cpp | 18
FeatureHashing-0.9/FeatureHashing/tests/test-as-dgCMatrix.R | 135 ++--
FeatureHashing-0.9/FeatureHashing/tests/test-empty_array.R |only
FeatureHashing-0.9/FeatureHashing/tests/test-hash.mapping.R |only
FeatureHashing-0.9/FeatureHashing/tests/test-hashing.R | 278 +++++-----
FeatureHashing-0.9/FeatureHashing/tests/test-interpret.tag.R | 25
FeatureHashing-0.9/FeatureHashing/tests/test-memcheck.R | 44 +
FeatureHashing-0.9/FeatureHashing/tests/test-product.R | 73 +-
FeatureHashing-0.9/FeatureHashing/tests/test-signed.hash.R |only
FeatureHashing-0.9/FeatureHashing/tests/test-split.R |only
FeatureHashing-0.9/FeatureHashing/tests/test-subsetting.R | 195 +++----
FeatureHashing-0.9/FeatureHashing/tests/test-transpose.R | 19
48 files changed, 1291 insertions(+), 834 deletions(-)
Permanent link
Title: Connect MonetDB to R
Diff between MonetDB.R versions 0.9.6 dated 2015-03-20 and 0.9.7 dated 2015-03-29
Description: Allows to pull data from MonetDB into R. Includes a DBI implementation and a dplyr backend.
Author: Hannes Muehleisen [aut, cre], Thomas Lumley [ctb], Anthony Damico [ctb]
Maintainer: Hannes Muehleisen
DESCRIPTION | 6 +++---
MD5 | 6 +++---
NEWS | 3 +++
src/mapisplit-r.c | 12 +++++-------
4 files changed, 14 insertions(+), 13 deletions(-)
Title: Standard Normal Homogeneity Test
Diff between snht versions 1.0.1 dated 2015-01-25 and 1.0.2 dated 2015-03-29
Description: Robust and non-robust SNHT tests for changepoint detection.
Author: Josh Browning
Maintainer: Josh Browning
snht-1.0.1/snht/README.md |only
snht-1.0.2/snht/DESCRIPTION | 13 ++++++++-----
snht-1.0.2/snht/MD5 | 21 ++++++++++++++++++---
snht-1.0.2/snht/NAMESPACE | 4 ++++
snht-1.0.2/snht/R/plotSNHT.R |only
snht-1.0.2/snht/build |only
snht-1.0.2/snht/inst |only
snht-1.0.2/snht/man/plotSNHT.Rd |only
snht-1.0.2/snht/vignettes |only
9 files changed, 30 insertions(+), 8 deletions(-)
Title: Political Science Computational Laboratory, Stanford University
Diff between pscl versions 1.4.8 dated 2015-01-24 and 1.4.9 dated 2015-03-29
Description: Bayesian analysis of item-response theory (IRT) models,
roll call analysis; computing highest density regions; maximum
likelihood estimation of zero-inflated and hurdle models for count
data; goodness-of-fit measures for GLMs; data sets used
in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from
Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman
DESCRIPTION | 8 +++----
MD5 | 20 ++++++++---------
NEWS | 4 ++-
R/vuong.R | 54 +++++++++++++++++++++++++++++++-----------------
build/vignette.rds |binary
data/absentee.rda |binary
inst/doc/countreg.pdf |binary
man/UKHouseOfCommons.Rd | 2 -
man/nj07.Rd | 3 --
man/readKH.Rd | 2 -
man/summary.ideal.Rd | 17 +--------------
11 files changed, 57 insertions(+), 53 deletions(-)
Title: Convert Rd to Roxygen Documentation
Diff between Rd2roxygen versions 1.5 dated 2014-08-24 and 1.6 dated 2015-03-29
Description: Functions to convert Rd to roxygen documentation. It can parse an
Rd file to a list, create the roxygen documentation and update the original
R script (e.g. the one containing the definition of the function)
accordingly. This package also provides utilities which can help developers
build packages using roxygen more easily. The formatR package can be used
to reformat the R code in the examples sections so that the code will be
more readable.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
Rd2roxygen-1.5/Rd2roxygen/vignettes/Rd2roxygen.css |only
Rd2roxygen-1.6/Rd2roxygen/DESCRIPTION | 21 +-
Rd2roxygen-1.6/Rd2roxygen/MD5 | 37 ++--
Rd2roxygen-1.6/Rd2roxygen/NEWS | 23 +++
Rd2roxygen-1.6/Rd2roxygen/R/build.R | 145 ++++++++++++-------
Rd2roxygen-1.6/Rd2roxygen/R/rd2roxygen.R | 126 ++++++++--------
Rd2roxygen-1.6/Rd2roxygen/R/utils.R | 67 +++++++-
Rd2roxygen-1.6/Rd2roxygen/README.md | 2
Rd2roxygen-1.6/Rd2roxygen/build/vignette.rds |binary
Rd2roxygen-1.6/Rd2roxygen/inst/doc/Rd2roxygen.R | 6
Rd2roxygen-1.6/Rd2roxygen/inst/doc/Rd2roxygen.Rmd | 15 -
Rd2roxygen-1.6/Rd2roxygen/inst/doc/Rd2roxygen.html | 152 ++++++++++----------
Rd2roxygen-1.6/Rd2roxygen/man/Rd2roxygen-package.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/Rd2roxygen.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/create_roxygen.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/parse_and_save.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/parse_file.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/reformat_code.Rd | 1
Rd2roxygen-1.6/Rd2roxygen/man/roxygen_and_build.Rd | 16 +-
Rd2roxygen-1.6/Rd2roxygen/vignettes/Rd2roxygen.Rmd | 15 -
20 files changed, 383 insertions(+), 248 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 1.8 dated 2015-01-22 and 1.9 dated 2015-03-29
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item functioning and modelling item and person
covariates.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers
DESCRIPTION | 10 -
MD5 | 150 ++++++++++++-------------
NAMESPACE | 1
R/01-itemtypes.R | 6 -
R/02-item_methods.R | 6 -
R/03-estimation.R | 26 ++--
R/04-derivatives.R | 37 +++++-
R/DIF.R | 7 +
R/DTF.R | 7 +
R/EMstep.group.R | 10 +
R/EMstep.utils.R | 56 ++++-----
R/LoadPars.R | 123 ++++++++++++--------
R/M2.R | 9 +
R/MHRM.group.R | 42 +++----
R/MultipleGroup-methods.R | 2
R/PLCI.mirt.R | 21 ++-
R/PrepData.R | 65 ++++++----
R/SE.methods.R | 4
R/SingleGroup-methods.R | 141 ++++++++++++++++++-----
R/averageMI.R | 2
R/bfactor.R | 1
R/boot.mirt.R | 1
R/calcLogLik.R | 2
R/createItem.R | 34 +++--
R/expand.table.R | 23 ++-
R/expected.item.R | 2
R/expected.test.R | 10 +
R/extract.group.R | 6 -
R/extract.item.R | 4
R/fixef.R |only
R/fscores.R | 7 -
R/fscores.internal.R | 80 ++++++++-----
R/imputeMissing.R | 4
R/itemfit.R | 9 -
R/itemplot.R | 9 +
R/itemplot.internal.R | 4
R/key2binary.R | 15 +-
R/mirt-package.R | 6 -
R/mirt.R | 34 ++++-
R/mirt.model.R | 21 +--
R/mixedmirt.R | 8 +
R/model.elements.R | 26 ++--
R/multipleGroup.R | 3
R/personfit.R | 6 -
R/probtrace.R | 4
R/randef.R | 3
R/simdata.R | 71 ++++++++---
R/testinfo.R | 2
R/utils.R | 66 ++++++++---
R/wald.R | 15 +-
README.md | 4
man/M2.Rd | 7 +
man/PLCI.mirt.Rd | 6 -
man/extract.group.Rd | 2
man/fixef.Rd |only
man/fscores.Rd | 6 -
man/itemplot.Rd | 5
man/mirt.Rd | 27 +++-
man/mirt.model.Rd | 21 +--
man/mixedmirt.Rd | 6 -
man/plot-method.Rd | 5
man/residuals-method.Rd | 7 +
man/simdata.Rd | 27 +++-
src/Estep.cpp | 74 +++---------
src/Estep.h | 5
src/Makevars | 3
src/Makevars.win | 3
src/Misc.cpp | 14 --
src/Misc.h | 4
src/dpars.cpp | 214 +++++++++++++++++++++++++++++++++++-
src/traceLinePts.cpp | 91 ++++++++++++++-
src/traceLinePts.h | 4
tests/tests/test-03-bfactor.R | 2
tests/tests/test-04-multipleGroup.R | 2
tests/tests/test-07-mixedmirt.R | 4
tests/tests/test-09-mirt.model.R | 6 +
tests/tests/test-10-extras.R | 23 +++
77 files changed, 1223 insertions(+), 550 deletions(-)
Title: Map Filenames to MIME Types
Diff between mime versions 0.2 dated 2014-09-26 and 0.3 dated 2015-03-29
Description: Guesses the MIME type from a filename extension using the data
derived from /etc/mime.types in UNIX-type systems.
Author: Jeffrey Horner [ctb],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
DESCRIPTION | 16 ++++++++--------
MD5 | 14 +++++++-------
NEWS | 8 +++++++-
R/mime.R | 4 +++-
R/mimemap.R | 14 +++++++++++---
man/guess_type.Rd | 1 +
man/mimemap.Rd | 1 +
man/parse_multipart.Rd | 1 +
8 files changed, 39 insertions(+), 20 deletions(-)
Title: Syntax Highlighting for R Source Code
Diff between highr versions 0.4 dated 2014-10-23 and 0.4.1 dated 2015-03-29
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (http://www.andre-simon.de).
Author: Christopher Gandrud [ctb],
Qiang Li [ctb],
Yixuan Qiu [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
DESCRIPTION | 16 ++++++++--------
MD5 | 16 ++++++++--------
R/highlight.R | 2 +-
README.md | 8 ++++----
build/vignette.rds |binary
inst/doc/highr-custom.html | 11 +++++++----
inst/doc/highr-internals.html | 11 +++++++----
man/hi_andre.Rd | 1 +
man/hilight.Rd | 1 +
9 files changed, 37 insertions(+), 29 deletions(-)
Title: Visually Exploring Random Forests
Diff between ggRandomForests versions 1.1.3 dated 2015-01-08 and 1.1.4 dated 2015-03-29
More information about ggRandomForests at CRAN
Description: Graphic elements for exploring Random Forests using the randomForestSRC package for survival, regression and
classification forests and ggplot2 package plotting.
Author: John Ehrlinger
Maintainer: John Ehrlinger
ggRandomForests-1.1.3/ggRandomForests/data/interaction_airq.rda |only
ggRandomForests-1.1.3/ggRandomForests/data/interaction_mtcars.rda |only
ggRandomForests-1.1.3/ggRandomForests/data/interaction_veteran.rda |only
ggRandomForests-1.1.3/ggRandomForests/data/partial_airq.rda |only
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ggRandomForests-1.1.3/ggRandomForests/data/partial_coplot_pbc_surf.rda |only
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ggRandomForests-1.1.3/ggRandomForests/vignettes/randomForestSRC-Survival-concordance.tex |only
ggRandomForests-1.1.4/ggRandomForests/DESCRIPTION | 15
ggRandomForests-1.1.4/ggRandomForests/MD5 | 263 --
ggRandomForests-1.1.4/ggRandomForests/NAMESPACE | 46
ggRandomForests-1.1.4/ggRandomForests/NEWS | 21
ggRandomForests-1.1.4/ggRandomForests/R/calc_roc.R | 115 -
ggRandomForests-1.1.4/ggRandomForests/R/combine.gg_partial.R | 62
ggRandomForests-1.1.4/ggRandomForests/R/gg_error.R | 48
ggRandomForests-1.1.4/ggRandomForests/R/gg_interaction.R | 29
ggRandomForests-1.1.4/ggRandomForests/R/gg_minimal_depth.R | 37
ggRandomForests-1.1.4/ggRandomForests/R/gg_minimal_vimp.R | 46
ggRandomForests-1.1.4/ggRandomForests/R/gg_partial.R | 82
ggRandomForests-1.1.4/ggRandomForests/R/gg_partial_coplot.R | 65
ggRandomForests-1.1.4/ggRandomForests/R/gg_rfsrc.R | 98
ggRandomForests-1.1.4/ggRandomForests/R/gg_roc.R | 25
ggRandomForests-1.1.4/ggRandomForests/R/gg_survival.R | 3
ggRandomForests-1.1.4/ggRandomForests/R/gg_variable.R | 58
ggRandomForests-1.1.4/ggRandomForests/R/gg_vimp.R | 86
ggRandomForests-1.1.4/ggRandomForests/R/interaction_data.R | 79
ggRandomForests-1.1.4/ggRandomForests/R/kaplan.R | 62
ggRandomForests-1.1.4/ggRandomForests/R/nelson.R | 85
ggRandomForests-1.1.4/ggRandomForests/R/partial.rfsrc.R |only
ggRandomForests-1.1.4/ggRandomForests/R/partial_coplot_data.R | 16
ggRandomForests-1.1.4/ggRandomForests/R/partial_data.R | 102
ggRandomForests-1.1.4/ggRandomForests/R/partial_surface_data.R | 52
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_error.R | 5
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_interaction.R | 47
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_minimal_depth.R | 65
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_minimal_vimp.R | 15
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_partial.R | 83
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_partial_list.R | 16
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_rfsrc.R | 67
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_roc.R | 65
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_survival.R | 23
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_variable.R | 106
ggRandomForests-1.1.4/ggRandomForests/R/plot.gg_vimp.R | 83
ggRandomForests-1.1.4/ggRandomForests/R/print.gg_minimal_depth.R | 24
ggRandomForests-1.1.4/ggRandomForests/R/quantile_pts.R | 9
ggRandomForests-1.1.4/ggRandomForests/R/rfsrc_cache_datasets.R | 346 +--
ggRandomForests-1.1.4/ggRandomForests/R/rfsrc_data.R | 102
ggRandomForests-1.1.4/ggRandomForests/R/surface_matrix.gg_partial_coplot.R | 44
ggRandomForests-1.1.4/ggRandomForests/R/varsel_data.R | 92
ggRandomForests-1.1.4/ggRandomForests/README.md | 2
ggRandomForests-1.1.4/ggRandomForests/build/vignette.rds |binary
ggRandomForests-1.1.4/ggRandomForests/data/datalist | 16
ggRandomForests-1.1.4/ggRandomForests/data/interaction_Boston.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/interaction_iris.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/interaction_pbc.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/partial_Boston.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/partial_coplot_Boston.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/partial_coplot_Boston2.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/partial_coplot_pbc.rda |binary
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ggRandomForests-1.1.4/ggRandomForests/data/partial_iris.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/partial_pbc.rda |binary
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ggRandomForests-1.1.4/ggRandomForests/data/rfsrc_iris.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/rfsrc_pbc.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/rfsrc_pbc_test.rda |binary
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ggRandomForests-1.1.4/ggRandomForests/data/varsel_iris.rda |binary
ggRandomForests-1.1.4/ggRandomForests/data/varsel_pbc.rda |binary
ggRandomForests-1.1.4/ggRandomForests/inst/CITATION | 6
ggRandomForests-1.1.4/ggRandomForests/inst/doc/randomForestSRC-Regression.R | 108
ggRandomForests-1.1.4/ggRandomForests/inst/doc/randomForestSRC-Regression.Rnw |only
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ggRandomForests-1.1.4/ggRandomForests/inst/doc/randomForestSRC-Survival.R | 735 +++---
ggRandomForests-1.1.4/ggRandomForests/inst/doc/randomForestSRC-Survival.Rnw | 1132 +++++-----
ggRandomForests-1.1.4/ggRandomForests/inst/doc/randomForestSRC-Survival.pdf |binary
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ggRandomForests-1.1.4/ggRandomForests/man/partial_data.Rd | 100
ggRandomForests-1.1.4/ggRandomForests/man/partial_surface_data.Rd |only
ggRandomForests-1.1.4/ggRandomForests/man/plot.gg_partial.Rd | 7
ggRandomForests-1.1.4/ggRandomForests/man/plot.gg_vimp.Rd | 6
ggRandomForests-1.1.4/ggRandomForests/man/print.gg_minimal_depth.Rd | 16
ggRandomForests-1.1.4/ggRandomForests/man/rfsrc_cache_datasets.Rd | 1
ggRandomForests-1.1.4/ggRandomForests/man/rfsrc_data.Rd | 97
ggRandomForests-1.1.4/ggRandomForests/man/shift.Rd |only
ggRandomForests-1.1.4/ggRandomForests/man/surface_matrix.Rd | 25
ggRandomForests-1.1.4/ggRandomForests/man/varsel_data.Rd | 88
ggRandomForests-1.1.4/ggRandomForests/vignettes/ggRandomForests.bib | 131 -
ggRandomForests-1.1.4/ggRandomForests/vignettes/randomForestSRC-Regression.Rnw |only
ggRandomForests-1.1.4/ggRandomForests/vignettes/randomForestSRC-Survival.Rnw | 1132 +++++-----
125 files changed, 3314 insertions(+), 3191 deletions(-)
Permanent link
Title: Format R Code Automatically
Diff between formatR versions 1.0 dated 2014-08-24 and 1.1 dated 2015-03-29
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 20 ++++++++++----------
MD5 | 28 ++++++++++++++--------------
NEWS | 11 +++++++++++
R/tidy.R | 2 +-
R/usage.R | 8 +++++---
R/utils.R | 1 +
build/vignette.rds |binary
inst/doc/formatR.html | 31 +++++++++++++++++--------------
inst/shiny/ui.R | 2 +-
man/deprecated.Rd | 1 +
man/tidy_app.Rd | 1 +
man/tidy_dir.Rd | 1 +
man/tidy_eval.Rd | 1 +
man/tidy_source.Rd | 3 ++-
man/usage.Rd | 8 ++++++--
15 files changed, 72 insertions(+), 46 deletions(-)
Title: Simulation-Based False Discovery Rate in RNA-Seq
Diff between empiricalFDR.DESeq2 versions 1.0 dated 2014-11-25 and 1.0.1 dated 2015-03-29
More information about empiricalFDR.DESeq2 at CRAN
Description: Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz
DESCRIPTION | 10 +++++-----
MD5 | 12 +++++++-----
R/empiricalFDR.R | 4 ++--
R/fdrBiCurve_work.R |only
R/fdrTable_work.R |only
man/empiricalFDR.DESeq2-package.Rd | 6 +++---
man/empiricalFDR.Rd | 5 ++++-
man/fdrBiCurve.Rd | 2 +-
8 files changed, 22 insertions(+), 17 deletions(-)
Permanent link
Title: Analysis of Animal Movements
Diff between adehabitatLT versions 0.3.18 dated 2015-03-27 and 0.3.19 dated 2015-03-29
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/rasterize.r | 32 +++++++++++++++++++++-----------
inst/doc/adehabitatLT.pdf |binary
4 files changed, 28 insertions(+), 18 deletions(-)