Title: Safely Access the RStudio API
Diff between rstudioapi versions 0.2 dated 2014-12-30 and 0.3.1 dated 2015-04-06
Description: Access the RStudio API (if available) and provide informative error messages
when it's not.
Author: Hadley Wickham [aut],
JJ Allaire [aut, cre],
RStudio [cph]
Maintainer: JJ Allaire
rstudioapi-0.2/rstudioapi/README.md |only
rstudioapi-0.3.1/rstudioapi/DESCRIPTION | 15 +++++++--------
rstudioapi-0.3.1/rstudioapi/LICENSE | 2 +-
rstudioapi-0.3.1/rstudioapi/MD5 | 12 ++++++------
rstudioapi-0.3.1/rstudioapi/NAMESPACE | 1 +
rstudioapi-0.3.1/rstudioapi/NEWS | 6 ++++++
rstudioapi-0.3.1/rstudioapi/R/stubs.R | 6 ++++++
rstudioapi-0.3.1/rstudioapi/man/sourceMarkers.Rd |only
8 files changed, 27 insertions(+), 15 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Diff between lpSolve versions 5.6.10 dated 2014-07-26 and 5.6.11 dated 2015-04-06
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Michel Berkelaar and others
Maintainer: Samuel E. Buttrey
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
src/lp_rlp.h | 2 +-
src/lp_utils.c | 11 +++++++++--
4 files changed, 18 insertions(+), 11 deletions(-)
Title: Interface to the 'g:Profiler' Toolkit
Diff between gProfileR versions 0.5 dated 2013-10-09 and 0.5.3 dated 2015-04-06
Description: Functional enrichment analysis, gene identifier conversion
and mapping homologous genes across related organisms via the
'g:Profiler' toolkit (http://biit.cs.ut.ee/gprofiler/).
Author: Juri Reimand
Maintainer: Tambet Arak
gProfileR-0.5.3/gProfileR/ChangeLog | 14 +
gProfileR-0.5.3/gProfileR/DESCRIPTION | 13 -
gProfileR-0.5.3/gProfileR/MD5 | 22 +-
gProfileR-0.5.3/gProfileR/NAMESPACE | 8
gProfileR-0.5.3/gProfileR/R/gProfileR.R | 71 +++++++-
gProfileR-0.5.3/gProfileR/man/gconvert.Rd | 73 ++------
gProfileR-0.5.3/gProfileR/man/get-sub-base-sub-url.Rd |only
gProfileR-0.5.3/gProfileR/man/get-sub-user-sub-agent.Rd |only
gProfileR-0.5.3/gProfileR/man/gorth.Rd | 84 +++------
gProfileR-0.5.3/gProfileR/man/gprofiler.Rd | 138 ++++++----------
gProfileR-0.5.3/gProfileR/man/set-sub-base-sub-url.Rd |only
gProfileR-0.5.3/gProfileR/man/set-sub-user-sub-agent.Rd |only
gProfileR-0.5/gProfileR/man/get_base_url.Rd |only
gProfileR-0.5/gProfileR/man/get_user_agent.Rd |only
gProfileR-0.5/gProfileR/man/set_base_url.Rd |only
gProfileR-0.5/gProfileR/man/set_user_agent.Rd |only
16 files changed, 207 insertions(+), 216 deletions(-)
Title: Missing Data Imputation and Model Checking
Diff between mi versions 0.09-19 dated 2014-10-02 and 0.10-1 dated 2015-04-06
Description: R functions for performing multiple imputation with several checks.
Author:
Andrew Gelman
Maintainer: Yu-Sung Su
CHANGELOG | 5
DESCRIPTION | 14 +-
MD5 | 44 ++++----
R/AllGeneric.R | 8 +
R/AllInternal.R | 2
R/coef.R | 1
R/mi.R | 266 +++++++++++++++++++++++++-------------------------
R/mi.binary.R | 8 -
R/mi.categorical.R | 36 +++---
R/mi.continuous.R | 36 +++---
R/mi.count.R | 40 +++----
R/mi.hist.R | 211 +++++++++++++++++++--------------------
R/mi.pmm.R | 28 ++---
R/mi.polr.R | 40 +++----
R/mi.scatterplot.R | 57 +++++-----
R/plot.R | 54 ++++------
R/resid.R | 4
man/mi.binary.Rd | 16 +--
man/mi.categorical.Rd | 16 +--
man/mi.continuous.Rd | 12 +-
man/mi.count.Rd | 22 ++--
man/mi.pmm.Rd | 14 +-
man/mi.polr.Rd | 20 +--
23 files changed, 482 insertions(+), 472 deletions(-)
Title: Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Diff between BBEST versions 0.1-3 dated 2015-03-09 and 0.1-4 dated 2015-04-06
Description: We implemented a Bayesian-statistics approach for
subtraction of incoherent scattering from neutron total-scattering data.
In this approach, the estimated background signal associated with
incoherent scattering maximizes the posterior probability, which combines
the likelihood of this signal in reciprocal and real spaces with the prior
that favors smooth lines.
Author: Anton Gagin and Igor Levin with contributions from Charles R. Hogg III
Maintainer: Anton Gagin
ChangeLog | 11 +
DESCRIPTION | 10 -
MD5 | 18 +-
R/interface.R | 60 ++++----
R/plot.R | 8 -
README.md | 39 ++++-
inst/gui/help/help.html | 8 +
inst/gui/server.R | 321 ++++++++++++++++++++++++++++++++++++++++++++----
inst/gui/ui.R | 35 ++++-
man/set.sigma.Rd | 11 -
10 files changed, 434 insertions(+), 87 deletions(-)
Title: Replicability Analysis for Multiple Studies of High Dimension
Diff between repfdr versions 1.1 dated 2014-10-02 and 1.1-3 dated 2015-04-06
Description: Estimation of Bayes and local Bayes false discovery rates for
replicability analysis.
Author: Ruth Heller [cre, aut],
Shachar Kaufman [aut],
Shay Yaacoby [aut],
Daniel Yekutieli [aut]
Maintainer: Ruth Heller
DESCRIPTION | 22 ++++--
MD5 | 33 +++++----
R/ztobins.R | 152 +++++++++++++++++++++++++++------------------
README.md |only
data/Pi.RData |binary
data/SNPlocations.RData |binary
data/binned_zmat.RData |binary
data/binned_zmat_sim.RData |binary
data/hmat_sim.RData |binary
data/zmat_sim.RData |binary
man/SNPlocations.Rd | 4 -
man/hmat_sim.Rd | 2
man/piem.Rd | 2
man/repfdr.Rd | 7 +-
man/zmat_sim.Rd | 4 -
man/ztobins.Rd | 24 +++----
src/Makevars | 2
src/Makevars.win | 6 -
18 files changed, 153 insertions(+), 105 deletions(-)
Title: Regular Expression Removal, Extraction, and Replacement Tools
Diff between qdapRegex versions 0.2.0 dated 2014-12-21 and 0.3.2 dated 2015-04-06
Description: A collection of regular expression tools associated with the
'qdap' package that may be useful outside of the context of discourse
analysis. Tools include removal/extraction/replacement of abbreviations,
dates, dollar amounts, email addresses, hash tags, numbers, percentages,
citations, person tags, phone numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 41 ++--
MD5 | 196 +++++++++++----------
NAMESPACE | 9
NEWS | 62 ++++++
R/case.R | 7
R/explain.R | 41 +++-
R/group_or.R |only
R/pastex.R | 15 +
R/print.regexr.R |only
R/qdapRegex-package.R | 16 +
R/rm_abbreviation.R | 3
R/rm_between.R | 4
R/rm_bracket.R | 14 +
R/rm_caps.R | 4
R/rm_caps_phrase.R | 7
R/rm_citation.R | 16 +
R/rm_citation_tex.R | 5
R/rm_city_state.R | 4
R/rm_city_state_zip.R | 5
R/rm_date.R | 4
R/rm_default.R | 4
R/rm_dollar.R | 5
R/rm_email.R | 4
R/rm_emoticon.R | 4
R/rm_endmark.R | 5
R/rm_hash.R | 4
R/rm_nchar_words.R | 4
R/rm_non_ascii.R | 4
R/rm_number.R | 4
R/rm_percent.R | 4
R/rm_phone.R | 4
R/rm_postal_code.R | 4
R/rm_repeated_characters.R |only
R/rm_repeated_phrases.R |only
R/rm_repeated_words.R |only
R/rm_tag.R | 4
R/rm_time.R | 4
R/rm_title_name.R | 4
R/rm_url.R | 5
R/rm_white.R | 13 +
R/rm_zip.R | 4
R/utils.R | 94 ++--------
README.md | 244 +++++++++++++++++++++++++--
data/regex_cheat.rda |binary
data/regex_supplement.rda |binary
data/regex_usa.rda |binary
inst/CITATION | 6
man/S.Rd | 3
man/bind.Rd | 3
man/case.Rd | 10 -
man/cheat.Rd | 3
man/escape.Rd | 3
man/explain.Rd | 8
man/grab.Rd | 3
man/group.Rd | 3
man/group_or.Rd |only
man/is.regex.Rd | 3
man/pastex.Rd | 16 +
man/print.explain.Rd |only
man/print.regexr.Rd |only
man/qdapRegex.Rd | 5
man/regex_cheat.Rd | 3
man/regex_supplement.Rd | 10 -
man/regex_usa.Rd | 13 +
man/rm_.Rd | 3
man/rm_abbreviation.Rd | 34 +++
man/rm_between.Rd | 33 +++
man/rm_bracket.Rd | 31 +++
man/rm_caps.Rd | 34 +++
man/rm_caps_phrase.Rd | 36 +++
man/rm_citation.Rd | 46 ++++-
man/rm_citation_tex.Rd | 34 +++
man/rm_city_state.Rd | 33 +++
man/rm_city_state_zip.Rd | 33 +++
man/rm_date.Rd | 34 +++
man/rm_default.Rd | 34 +++
man/rm_dollar.Rd | 34 +++
man/rm_email.Rd | 34 +++
man/rm_emoticon.Rd | 34 +++
man/rm_endmark.Rd | 34 +++
man/rm_hash.Rd | 34 +++
man/rm_nchar_words.Rd | 34 +++
man/rm_non_ascii.Rd | 34 +++
man/rm_number.Rd | 34 +++
man/rm_percent.Rd | 34 +++
man/rm_phone.Rd | 34 +++
man/rm_postal_code.Rd | 34 +++
man/rm_repeated_characters.Rd |only
man/rm_repeated_phrases.Rd |only
man/rm_repeated_words.Rd |only
man/rm_tag.Rd | 34 +++
man/rm_time.Rd | 34 +++
man/rm_title_name.Rd | 34 +++
man/rm_url.Rd | 33 +++
man/rm_white.Rd | 26 ++
man/rm_zip.Rd | 34 +++
man/validate.Rd | 3
tests/testthat/test-S.R |only
tests/testthat/test-cheat.R |only
tests/testthat/test-explain.R |only
tests/testthat/test-group_or.R |only
tests/testthat/test-hijack.R |only
tests/testthat/test-pastex.R | 1
tests/testthat/test-rm_bracket.R | 46 ++++-
tests/testthat/test-rm_caps_phrase.R | 16 +
tests/testthat/test-rm_non_ascii.R |only
tests/testthat/test-rm_repeated_characters.R |only
tests/testthat/test-rm_repeated_phrases.R |only
tests/testthat/test-rm_repeated_words.R |only
109 files changed, 1681 insertions(+), 306 deletions(-)
Title: Dictionaries and Word Lists for the 'qdap' Package
Diff between qdapDictionaries versions 1.0.2 dated 2014-08-01 and 1.0.5 dated 2015-04-06
More information about qdapDictionaries at CRAN
Description: A collection of dictionaries and word lists for use with the 'qdap' package.
Author: Tyler Rinker
Maintainer: Tyler Rinker
DESCRIPTION | 14 +--
MD5 | 164 ++++++++++++++++++-------------------
NAMESPACE | 2
NEWS | 31 +++++-
R/qdapDictionaries-package.R | 60 ++++++++++++-
README.md | 18 ++--
data/BuckleySaltonSWL.rda |binary
data/DICTIONARY.rda |binary
data/Dolch.rda |binary
data/Fry_1000.rda |binary
data/GradyAugmented.rda |binary
data/Leveled_Dolch.rda |binary
data/NAMES.rda |binary
data/NAMES_LIST.rda |binary
data/NAMES_SEX.rda |binary
data/OnixTxtRetToolkitSWL1.rda |binary
data/Top100Words.rda |binary
data/Top200Words.rda |binary
data/Top25Words.rda |binary
data/abbreviations.rda |binary
data/action.verbs.rda |binary
data/adverb.rda |binary
data/amplification.words.rda |binary
data/contractions.rda |binary
data/datalist | 2
data/deamplification.words.rda |binary
data/discourse.markers.alemany.rda |only
data/emoticon.rda |binary
data/function.words.rda |only
data/interjections.rda |binary
data/key.pol.rda |binary
data/key.power.rda |binary
data/key.strength.rda |binary
data/key.syl.rda |binary
data/key.syn.rda |binary
data/labMT.rda |binary
data/negation.words.rda |binary
data/negative.words.rda |binary
data/positive.words.rda |binary
data/power.words.rda |binary
data/preposition.rda |binary
data/strong.words.rda |binary
data/submit.words.rda |binary
data/weak.words.rda |binary
inst/CITATION | 6 -
man/BuckleySaltonSWL.Rd | 3
man/DICTIONARY.Rd | 3
man/Dolch.Rd | 3
man/Fry_1000.Rd | 3
man/GradyAugmented.Rd | 5 -
man/Leveled_Dolch.Rd | 3
man/NAMES.Rd | 5 -
man/NAMES_LIST.Rd | 5 -
man/NAMES_SEX.Rd | 5 -
man/OnixTxtRetToolkitSWL1.Rd | 3
man/Top100Words.Rd | 3
man/Top200Words.Rd | 3
man/Top25Words.Rd | 3
man/abbreviations.Rd | 3
man/action.verbs.Rd | 3
man/adverb.Rd | 3
man/amplification.words.Rd | 3
man/contractions.Rd | 5 -
man/deamplification.words.Rd | 3
man/discourse.markers.alemany.Rd |only
man/emoticon.Rd | 3
man/function.words.Rd |only
man/interjections.Rd | 3
man/key.pol.Rd | 3
man/key.power.Rd | 3
man/key.strength.Rd | 3
man/key.syl.Rd | 3
man/key.syn.Rd | 3
man/labMT.Rd | 3
man/negation.words.Rd | 3
man/negative.words.Rd | 3
man/positive.words.Rd | 3
man/power.words.Rd | 3
man/preposition.Rd | 3
man/print.view_data.Rd | 3
man/qdapDictionaries.Rd | 3
man/strong.words.Rd | 3
man/submit.words.Rd | 3
man/view_data.Rd | 3
man/weak.words.Rd | 3
85 files changed, 268 insertions(+), 153 deletions(-)
Permanent link
Title: Models for Skewed Count Distributions Relevant to Networks
Diff between degreenet versions 1.2 dated 2013-02-03 and 1.3 dated 2015-04-06
Description: Likelihood-based inference for skewed count distributions used in network modeling. "degreenet" is a part of the "statnet" suite of packages for network analysis.
Author: Mark S. Handcock
Maintainer: Mark S. Handcock
degreenet-1.2/degreenet/R/simyule.R |only
degreenet-1.2/degreenet/src/f2c.h |only
degreenet-1.3/degreenet/DESCRIPTION | 15 -
degreenet-1.3/degreenet/MD5 | 62 ++---
degreenet-1.3/degreenet/NAMESPACE | 3
degreenet-1.3/degreenet/R/cmp.natural.R | 4
degreenet-1.3/degreenet/R/degreenet.R | 59 -----
degreenet-1.3/degreenet/R/degreenet.utils.R |only
degreenet-1.3/degreenet/R/reedmolloy.R | 78 ++----
degreenet-1.3/degreenet/R/ryule.R |only
degreenet-1.3/degreenet/R/zeta.R |only
degreenet-1.3/degreenet/R/zzz.R | 24 +-
degreenet-1.3/degreenet/data/sweden.RData |binary
degreenet-1.3/degreenet/inst/CITATION | 20 -
degreenet-1.3/degreenet/man/awarmle.Rd | 148 ++++++------
degreenet-1.3/degreenet/man/ayulemle.Rd | 130 +++++------
degreenet-1.3/degreenet/man/bsnb.Rd | 140 ++++++------
degreenet-1.3/degreenet/man/bspln.Rd | 144 ++++++------
degreenet-1.3/degreenet/man/bswar.Rd | 148 ++++++------
degreenet-1.3/degreenet/man/bsyule.Rd | 140 ++++++------
degreenet-1.3/degreenet/man/gyulemle.Rd | 166 +++++++-------
degreenet-1.3/degreenet/man/llgyule.Rd | 154 ++++++-------
degreenet-1.3/degreenet/man/llgyuleall.Rd | 152 ++++++-------
degreenet-1.3/degreenet/man/llyule.Rd | 165 +++++++-------
degreenet-1.3/degreenet/man/llyuleall.Rd | 148 ++++++------
degreenet-1.3/degreenet/man/reedmolloy.Rd | 6
degreenet-1.3/degreenet/man/ryule.Rd | 78 +++---
degreenet-1.3/degreenet/man/simnb.Rd | 66 ++---
degreenet-1.3/degreenet/man/simwar.Rd | 68 ++---
degreenet-1.3/degreenet/man/simyule.Rd | 66 ++---
degreenet-1.3/degreenet/src/cmp.c | 56 +++-
degreenet-1.3/degreenet/src/cmp.h | 2
degreenet-1.3/degreenet/src/dpoilog.c | 6
degreenet-1.3/degreenet/src/zeta.c | 320 +++-------------------------
degreenet-1.3/degreenet/src/zeta.h |only
35 files changed, 1140 insertions(+), 1428 deletions(-)