Title: Functions for Baseline-Based Time Series Prediction
Description: Functions for time series prediction and accuracy assessment using automatic ARIMA modelling. The generated ARIMA models and its yielded prediction errors are intended to be used as baseline for evaluating the practical value of other time series prediction methods and creating a demand for the refinement of such methods. For this purpose, benchmark data from prediction competitions may be used.
Author: Rebecca Pontes Salles [aut, cre, cph] (CEFET/RJ),
Eduardo Ogasawara [ths] (CEFET/RJ)
Maintainer: Rebecca Pontes Salles
Diff between TSPred versions 1.0 dated 2015-03-30 and 2.0 dated 2015-04-07
DESCRIPTION | 8 ++-- MD5 | 56 +++++++++++++++++++--------- R/arimainterp.R |only R/arimapred.R | 7 ++- R/marimapred.R | 88 +++++++++++++++++++++++++++++++++++++-------- data/CATS.cont.rda |only data/CATS.rda |only data/EUNITE.Loads.cont.rda |only data/EUNITE.Loads.rda |only data/EUNITE.Reg.cont.rda |only data/EUNITE.Reg.rda |only data/EUNITE.Temp.cont.rda |only data/EUNITE.Temp.rda |only data/NN3.A.cont.rda |binary data/NN3.A.rda |binary data/NN5.A.cont.rda |only data/NN5.A.rda |only data/SantaFe.A.cont.rda |binary data/SantaFe.A.rda |binary data/SantaFe.D.cont.rda |binary data/SantaFe.D.rda |binary man/CATS.Rd |only man/CATS.cont.Rd |only man/EUNITE.Loads.Rd |only man/EUNITE.Loads.cont.Rd |only man/EUNITE.Reg.Rd |only man/EUNITE.Reg.cont.Rd |only man/EUNITE.Temp.Rd |only man/EUNITE.Temp.cont.Rd |only man/NN3.A.Rd | 4 +- man/NN3.A.cont.Rd | 4 +- man/NN5.A.Rd |only man/NN5.A.cont.Rd |only man/SantaFe.A.Rd | 2 - man/SantaFe.A.cont.Rd | 6 +-- man/SantaFe.D.Rd | 2 - man/SantaFe.D.cont.Rd | 6 +-- man/arimainterp.Rd |only man/arimapred.Rd | 2 - man/marimapred.Rd | 12 +++--- 40 files changed, 141 insertions(+), 56 deletions(-)
Title: Propensity Score Matching of Non-Binary Treatments
Description: Propensity score matching for non-binary treatments.
Author: Jason Bryer
Maintainer: Jason Bryer
Diff between TriMatch versions 0.9.1 dated 2013-09-20 and 0.9.4 dated 2015-04-07
TriMatch-0.9.1/TriMatch/build |only TriMatch-0.9.1/TriMatch/inst |only TriMatch-0.9.1/TriMatch/vignettes |only TriMatch-0.9.4/TriMatch/DESCRIPTION | 18 -- TriMatch-0.9.4/TriMatch/MD5 | 109 +++++++-------- TriMatch-0.9.4/TriMatch/NAMESPACE | 13 + TriMatch-0.9.4/TriMatch/NEWS | 17 ++ TriMatch-0.9.4/TriMatch/R/TriMatch-package.R | 11 + TriMatch-0.9.4/TriMatch/R/as.data.frame.list.R | 1 TriMatch-0.9.4/TriMatch/R/merge.triangle.matches.R | 1 TriMatch-0.9.4/TriMatch/R/merge.triangle.psa.R | 1 TriMatch-0.9.4/TriMatch/R/plot.balance.R | 4 TriMatch-0.9.4/TriMatch/R/plot.triangle.matches.R | 1 TriMatch-0.9.4/TriMatch/R/plot.triangle.psa.R | 4 TriMatch-0.9.4/TriMatch/R/summary.triangle.matches.R | 2 TriMatch-0.9.4/TriMatch/R/summary.triangle.psa.R | 1 TriMatch-0.9.4/TriMatch/R/triangle.match.R | 2 TriMatch-0.9.4/TriMatch/R/triangle.psa.R | 6 TriMatch-0.9.4/TriMatch/R/unmatched.R | 1 TriMatch-0.9.4/TriMatch/demo/00Index | 1 TriMatch-0.9.4/TriMatch/demo/one-to-one-to-one.R |only TriMatch-0.9.4/TriMatch/demo/tutoring.R | 13 + TriMatch-0.9.4/TriMatch/man/OneToN.Rd | 28 +--- TriMatch-0.9.4/TriMatch/man/TriMatch-package.Rd | 11 - TriMatch-0.9.4/TriMatch/man/as.data.frame.list.Rd | 59 +++----- TriMatch-0.9.4/TriMatch/man/balance.plot.Rd | 67 ++++----- TriMatch-0.9.4/TriMatch/man/boxdiff.plot.Rd | 27 ++- TriMatch-0.9.4/TriMatch/man/covariateBalance.Rd | 88 +++++------- TriMatch-0.9.4/TriMatch/man/distance.euclid.Rd | 36 ++--- TriMatch-0.9.4/TriMatch/man/distances.plot.Rd | 20 +- TriMatch-0.9.4/TriMatch/man/loess3.plot.Rd | 68 ++++----- TriMatch-0.9.4/TriMatch/man/maximumTreat.Rd | 27 +-- TriMatch-0.9.4/TriMatch/man/merge.triangle.matches.Rd | 15 +- TriMatch-0.9.4/TriMatch/man/merge.triangle.psa.Rd | 15 +- TriMatch-0.9.4/TriMatch/man/multibalance.plot.Rd | 25 +-- TriMatch-0.9.4/TriMatch/man/nmes.Rd | 49 +++---- TriMatch-0.9.4/TriMatch/man/parallel.plot.Rd | 11 - TriMatch-0.9.4/TriMatch/man/perpPt.Rd | 14 +- TriMatch-0.9.4/TriMatch/man/plot.balance.plots.Rd | 28 +--- TriMatch-0.9.4/TriMatch/man/plot.triangle.matches.Rd | 59 +++----- TriMatch-0.9.4/TriMatch/man/plot.triangle.psa.Rd | 57 +++----- TriMatch-0.9.4/TriMatch/man/print.balance.plots.Rd | 15 +- TriMatch-0.9.4/TriMatch/man/print.triangle.plot.Rd | 15 +- TriMatch-0.9.4/TriMatch/man/print.trimatch.summary.Rd | 17 +- TriMatch-0.9.4/TriMatch/man/segment1.Rd | 10 - TriMatch-0.9.4/TriMatch/man/segment2.Rd | 10 - TriMatch-0.9.4/TriMatch/man/star.Rd | 10 - TriMatch-0.9.4/TriMatch/man/summary.balance.plots.Rd | 23 +-- TriMatch-0.9.4/TriMatch/man/summary.triangle.matches.Rd | 38 ++--- TriMatch-0.9.4/TriMatch/man/summary.triangle.psa.Rd | 15 +- TriMatch-0.9.4/TriMatch/man/summary.unmatched.Rd | 16 +- TriMatch-0.9.4/TriMatch/man/trimatch.Rd | 112 +++++++--------- TriMatch-0.9.4/TriMatch/man/trimatch.apply2.Rd | 55 +++---- TriMatch-0.9.4/TriMatch/man/trips.Rd | 46 +++--- TriMatch-0.9.4/TriMatch/man/tutoring.Rd | 50 +++---- TriMatch-0.9.4/TriMatch/man/unmatched.Rd | 16 +- 56 files changed, 666 insertions(+), 692 deletions(-)
Title: Matrix Completion via Iterative Soft-Thresholded SVD
Description: Iterative methods for matrix completion that use nuclear-norm regularization. There are two main approaches.The one approach uses iterative soft-thresholded svds to impute the missing values. The second approach uses alternating least squares. Both have an "EM" flavor, in that at each iteration the matrix is completed with the current estimate. For large matrices there is a special sparse-matrix class named "Incomplete" that efficiently handles all computations. The package includes procedures for centering and scaling rows, columns or both, and for computing low-rank SVDs on large sparse centered matrices (i.e. principal components)
Author: Trevor Hastie
Maintainer: Trevor Hastie
Diff between softImpute versions 1.0 dated 2013-04-03 and 1.4 dated 2015-04-07
DESCRIPTION | 28 +++++++++------------------ MD5 | 42 +++++++++++++++++++++++++---------------- NAMESPACE | 5 ++-- R/Methods_splr.R | 2 + R/Ssimpute.als.R | 4 +-- R/Ssimpute.svd.R | 4 +-- R/Ssvd.als.R | 4 +-- R/centerScale.R | 7 ++++-- R/clean.warm.start.R |only R/deBias.R |only R/onAttach.R |only R/simpute.als.R | 4 +-- R/simpute.svd.R | 4 +-- R/softImpute.R | 5 ++++ R/svd.als.R | 4 +++ build |only inst |only man/SparseplusLowRank-class.Rd | 4 +++ man/biScale.Rd | 3 +- man/deBias.Rd |only man/softImpute-internal.Rd | 1 man/softImpute.Rd | 25 +++++++++++++----------- man/svd.als.Rd | 9 +++++--- src/plusregC.f |only vignettes |only 25 files changed, 92 insertions(+), 63 deletions(-)
Title: Tools for Custom Searches / Subsets / Slices of Named R Objects
Description: Provides functionality for searching / subsetting and slicing named
objects using 'stringr/i'-style modifiers by case (in)sensitivity,
regular expressions or fixed expressions; searches uses the standard '['
operator and allows specification of default search behavior to either the
search target (named object) and/or the search pattern.
Author: "DecisionPatterns [aut, cre]"
Maintainer: Christopher Brown
Diff between searchable versions 0.1.2 dated 2015-03-24 and 0.3.3.1 dated 2015-04-07
searchable-0.1.2/searchable/R/Class-searchable.R |only searchable-0.1.2/searchable/R/match-modifiers.R |only searchable-0.1.2/searchable/man/match.modifiers.Rd |only searchable-0.1.2/searchable/tests/testthat/test-searchable.R |only searchable-0.3.3.1/searchable/DESCRIPTION | 36 searchable-0.3.3.1/searchable/MD5 | 56 + searchable-0.3.3.1/searchable/NAMESPACE | 54 + searchable-0.3.3.1/searchable/NEWS |only searchable-0.3.3.1/searchable/R/Class-Pattern.R |only searchable-0.3.3.1/searchable/R/Class-PatternOrCharacter.R |only searchable-0.3.3.1/searchable/R/Class-Searchable.R |only searchable-0.3.3.1/searchable/R/Class-SearchableOrPattern.R |only searchable-0.3.3.1/searchable/R/Class-Searchables.R |only searchable-0.3.3.1/searchable/R/boundary.R |only searchable-0.3.3.1/searchable/R/case.R |only searchable-0.3.3.1/searchable/R/coll.R |only searchable-0.3.3.1/searchable/R/detect.R |only searchable-0.3.3.1/searchable/R/extract.R | 362 +++------- searchable-0.3.3.1/searchable/R/fixed.R |only searchable-0.3.3.1/searchable/R/invert.R | 2 searchable-0.3.3.1/searchable/R/regex.R |only searchable-0.3.3.1/searchable/R/reverse.lookup.R | 23 searchable-0.3.3.1/searchable/R/searchable-package.R | 91 +- searchable-0.3.3.1/searchable/R/std.R |only searchable-0.3.3.1/searchable/R/stri_detect_std.R |only searchable-0.3.3.1/searchable/README.md | 105 +- searchable-0.3.3.1/searchable/man/boundary.Rd |only searchable-0.3.3.1/searchable/man/case.Rd |only searchable-0.3.3.1/searchable/man/coll.Rd |only searchable-0.3.3.1/searchable/man/detect.Rd |only searchable-0.3.3.1/searchable/man/extract.Rd | 137 +-- searchable-0.3.3.1/searchable/man/fixed.Rd |only searchable-0.3.3.1/searchable/man/invert.Rd | 6 searchable-0.3.3.1/searchable/man/is.string.Rd | 2 searchable-0.3.3.1/searchable/man/pattern.Rd |only searchable-0.3.3.1/searchable/man/regex.Rd |only searchable-0.3.3.1/searchable/man/reverse.lookup.Rd | 10 searchable-0.3.3.1/searchable/man/searchable-package.Rd | 75 +- searchable-0.3.3.1/searchable/man/searchable.Rd | 179 +++- searchable-0.3.3.1/searchable/man/std.Rd |only searchable-0.3.3.1/searchable/man/stri_std.Rd |only searchable-0.3.3.1/searchable/tests/testthat/test-lists.r |only searchable-0.3.3.1/searchable/tests/testthat/test-searchable.r |only searchable-0.3.3.1/searchable/tests/testthat/test-vectors.r |only 44 files changed, 611 insertions(+), 527 deletions(-)
Title: Fast and Exact Algorithms for Computing Phylogenetic
Biodiversity Measures
Description: Given a phylogenetic tree T and a sample S of species represented as
a subset of tips in T, we want to compute a measure of the diversity
of the species in S with respect to T. The current package offers the
implementations of efficient algorithms for several such measures.
Most importantly, the package includes algorithms for computing exactly and
efficiently the expectation and the variance of these measures, which are
essential for null model comparisons. Efficient computation of
richness-standardized versions of these metrics, such as the net
relatedness index (NRI), nearest taxon index (NTI), phylogenetic
diversity index (PDI), and the corresponding indices of two-sample measures
are also available in this package. The package also introduces a new
single-sample measure, the Core Ancestor Cost (CAC); the package provides
functions for computing the value and the standardised index of the CAC and,
more than that, there is an extra function available that can compute exactly
any statistical moment of the measure.
Author: Constantinos Tsirogiannis [aut, cre], Brody Sandel [aut]
Maintainer: Constantinos Tsirogiannis
Diff between PhyloMeasures versions 1.0 dated 2015-04-02 and 1.1 dated 2015-04-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ man/PhyloMeasures-package.Rd | 4 ++-- src/Measures/Core_ancestor_cost_impl.h | 4 ---- src/Measures/Mean_nearest_taxon_distance_impl.h | 5 +---- src/Measures/Phylogenetic_diversity_impl.h | 2 -- src/Phylogenetic_tree_base.h | 24 ++++++++++++------------ 7 files changed, 24 insertions(+), 33 deletions(-)
Title: Phylogenetic Analysis in R
Description: Phylogenetic analysis in R: Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
distance methods and Hadamard conjugation.
Author: Klaus Schliep, Emmanuel Paradis
Maintainer: Klaus Schliep
Diff between phangorn versions 1.99-12 dated 2015-02-13 and 1.99-13 dated 2015-04-07
phangorn-1.99-12/phangorn/R/RcppExports.R |only phangorn-1.99-12/phangorn/src/init.c |only phangorn-1.99-13/phangorn/DESCRIPTION | 10 phangorn-1.99-13/phangorn/MD5 | 42 - phangorn-1.99-13/phangorn/NAMESPACE | 6 phangorn-1.99-13/phangorn/NEWS | 10 phangorn-1.99-13/phangorn/R/distSeq.R | 3 phangorn-1.99-13/phangorn/R/fitch.R | 48 - phangorn-1.99-13/phangorn/R/hadamard.R |only phangorn-1.99-13/phangorn/R/parsimony.R | 51 + phangorn-1.99-13/phangorn/R/phyDat.R | 222 +++++++- phangorn-1.99-13/phangorn/R/phylo.R | 570 ++++++---------------- phangorn-1.99-13/phangorn/R/treedist.R | 2 phangorn-1.99-13/phangorn/R/zzz.R | 5 phangorn-1.99-13/phangorn/build/vignette.rds |binary phangorn-1.99-13/phangorn/man/distanceHadamard.Rd | 74 +- phangorn-1.99-13/phangorn/man/phyDat.Rd | 192 +++---- phangorn-1.99-13/phangorn/man/pmlCluster.Rd | 6 phangorn-1.99-13/phangorn/man/pmlPart.Rd | 8 phangorn-1.99-13/phangorn/src/dist.c | 2 phangorn-1.99-13/phangorn/src/ml.c | 426 +++++++++------- phangorn-1.99-13/phangorn/src/phangorn.c | 40 - phangorn-1.99-13/phangorn/src/read_aa.c |only phangorn-1.99-13/phangorn/vignettes/phangorn.bib | 105 +++- 24 files changed, 952 insertions(+), 870 deletions(-)
Title: Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Description: A set of handy functions. Includes a versatile one line progress bar, one
line function timer with detailed output, time delay function, text histogram, object
preview, CRAN package search, simpler package installer, Linux command install check,
a flexible Mode function, top function, simulation of correlated data, and more.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper
Diff between NCmisc versions 1.1.3 dated 2014-09-03 and 1.1.4 dated 2015-04-07
DESCRIPTION | 19 + MD5 | 104 +++++----- NAMESPACE | 11 - R/NCmisc.R | 409 ++++++++++++++++++++++++++++++++++++++++-- man/Dim.Rd | 3 man/Header.Rd | 3 man/Mode.Rd | 3 man/NCmisc-internal.Rd | 1 man/NCmisc-package.Rd | 22 +- man/Rfile.index.Rd | 6 man/Substitute.Rd | 3 man/Unlist.Rd | 3 man/Z.to.p.Rd |only man/check.linux.install.Rd | 5 man/comify.Rd |only man/cor.with.Rd | 3 man/dup.pairs.Rd |only man/estimate.memory.Rd | 3 man/exists.not.function.Rd | 3 man/extend.pc.Rd | 9 man/fakeLines.Rd | 3 man/file.split.Rd | 12 + man/force.percentage.Rd | 3 man/force.scalar.Rd | 3 man/get.distinct.cols.Rd | 3 man/getRepositories.Rd | 4 man/has.method.Rd |only man/headl.Rd | 3 man/list.functions.in.file.Rd |only man/list.to.env.Rd | 10 - man/loess.scatter.Rd | 7 man/loop.tracker.Rd | 3 man/memory.summary.Rd | 3 man/must.use.package.Rd | 9 man/narm.Rd | 3 man/out.of.Rd | 3 man/p.to.Z.Rd |only man/packages.loaded.Rd | 4 man/pad.left.Rd | 3 man/pctile.Rd | 3 man/ppa.Rd |only man/preview.Rd | 3 man/prv.Rd | 3 man/prv.large.Rd | 3 man/rmv.spc.Rd | 3 man/search.cran.Rd | 4 man/sim.cor.Rd | 3 man/simple.date.Rd | 3 man/spc.Rd | 3 man/standardize.Rd | 3 man/summarise.r.datasets.Rd | 5 man/textogram.Rd | 3 man/timeit.Rd | 3 man/toheader.Rd | 3 man/top.Rd | 3 man/wait.Rd | 3 man/which.outlier.Rd |only 57 files changed, 600 insertions(+), 137 deletions(-)
Title: Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Description: This software package implements functions to simulate spherical, ellipsoid and cubic polyatomic nanoparticles with arbitrary crystal structures and to calculate the associated pair-distribution function and X-ray/neutron total-scattering signals. It also provides a target function that can be used for simultaneous fitting of small- and wide-angle total scattering data in real and reciprocal spaces. The target function can be generated either as a sum of weighted residuals for individual datasets or as a vector of residuals suitable for optimization using multi-criteria algorithms (e.g. Pareto methods).
Author: Anton Gagin, Katharine Mullen, Igor Levin
Maintainer: Anton Gagin
Diff between nanop versions 2.0-4 dated 2014-08-25 and 2.0-5 dated 2015-04-07
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS | 2 ++ R/displacePart.R | 19 ++++++++++++------- data |only inst/CITATION | 2 +- 6 files changed, 24 insertions(+), 16 deletions(-)
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier
Diff between NAM versions 1.1.2 dated 2015-04-01 and 1.2 dated 2015-04-07
NAM-1.1.2/NAM/man/manhattan.Rd |only NAM-1.2/NAM/DESCRIPTION | 12 NAM-1.2/NAM/MD5 | 25 - NAM-1.2/NAM/NAMESPACE | 7 NAM-1.2/NAM/R/Fst.R | 85 ++- NAM-1.2/NAM/R/gibbs.R | 392 ++++++++-------- NAM-1.2/NAM/R/gwas.R | 967 ++++++++++++++++++++--------------------- NAM-1.2/NAM/R/manhattan.R | 63 +- NAM-1.2/NAM/R/snpH2.R | 15 NAM-1.2/NAM/man/Fst.Rd | 17 NAM-1.2/NAM/man/NAM-package.Rd | 66 +- NAM-1.2/NAM/man/gibbs.Rd | 6 NAM-1.2/NAM/man/gwas.Rd | 136 +++-- NAM-1.2/NAM/man/snpH2.Rd | 67 +- 14 files changed, 955 insertions(+), 903 deletions(-)
Title: Running OpenBUGS from R
Description: Using this package,
it is possible to call a BUGS model, summarize inferences and
convergence in a table and graph, and save the simulations in arrays for easy access
in R.
Author: originally written as R2WinBUGS by Andrew Gelman
Maintainer: Neal Thomas
Diff between R2OpenBUGS versions 3.2-2.2 dated 2013-04-10 and 3.2-3.1 dated 2015-04-07
R2OpenBUGS-3.2-2.2/R2OpenBUGS/CreatevalidateOpenBUGS.R |only R2OpenBUGS-3.2-2.2/R2OpenBUGS/inst/doc/R2OpenBUGS.R |only R2OpenBUGS-3.2-2.2/R2OpenBUGS/tests |only R2OpenBUGS-3.2-3.1/R2OpenBUGS/DESCRIPTION | 28 ++++++++--------- R2OpenBUGS-3.2-3.1/R2OpenBUGS/MD5 | 15 +++------ R2OpenBUGS-3.2-3.1/R2OpenBUGS/NAMESPACE | 1 R2OpenBUGS-3.2-3.1/R2OpenBUGS/R/findOpenBUGS.R | 6 +-- R2OpenBUGS-3.2-3.1/R2OpenBUGS/build |only R2OpenBUGS-3.2-3.1/R2OpenBUGS/inst/NEWS | 3 + R2OpenBUGS-3.2-3.1/R2OpenBUGS/man/bugs.Rd | 4 +- 10 files changed, 29 insertions(+), 28 deletions(-)
Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre],
David Hunter [ctb],
Mark Handcock [ctb],
Skye Bender-deMoll [ctb],
Jeffrey Horner [ctb]
Maintainer: Carter T. Butts
Diff between network versions 1.11.3 dated 2014-12-06 and 1.12.0 dated 2015-04-07
ChangeLog | 7 DESCRIPTION | 10 MD5 | 27 - NAMESPACE | 35 + R/coercion.R | 2 R/plot.R | 877 +++++++++++++++++++++++++------------------ inst/CITATION | 96 +++- inst/doc/networkVignette.pdf |binary man/network-package.Rd | 6 man/network.Rd | 6 man/network.edgelabel.Rd | 8 man/plot.network.Rd | 2 man/preparePlotArgs.Rd |only tests/general.tests2.R | 23 + tests/plot_tests.R | 12 15 files changed, 707 insertions(+), 404 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol
Diff between Deriv versions 3.0 dated 2015-03-06 and 3.2 dated 2015-04-07
DESCRIPTION | 9 - MD5 | 24 +-- NEWS | 16 ++ R/Deriv.R | 248 +++++++++++++++++++------------------ R/Simplify.R | 196 ++++++++++++++++++----------- README.md | 2 inst/CITATION | 2 man/Deriv-package.Rd | 2 man/Deriv.Rd | 40 ++++- tests/testthat/test_Deriv.R | 28 ++-- tests/testthat/test_Deriv.R.bck | 25 ++- tests/testthat/test_Simplify.R | 3 tests/testthat/test_Simplify.R.bck | 4 13 files changed, 365 insertions(+), 234 deletions(-)
Title: Bayesian Generalized Linear Regression
Description: Bayesian Generalized Linear Regression.
Author: Gustavo de los Campos, Paulino Perez Rodriguez,
Maintainer: Paulino Perez Rodriguez
Diff between BGLR versions 1.0.3 dated 2014-06-10 and 1.0.4 dated 2015-04-07
BGLR-1.0.3/BGLR/man/effects.BGLR.Rd |only BGLR-1.0.4/BGLR/CHANGELOG | 5 BGLR-1.0.4/BGLR/DESCRIPTION | 12 - BGLR-1.0.4/BGLR/MD5 | 21 - BGLR-1.0.4/BGLR/NAMESPACE | 11 BGLR-1.0.4/BGLR/R/BGLR.R | 413 +++++++++++++++++++++++++++-------- BGLR-1.0.4/BGLR/R/methods.R | 12 - BGLR-1.0.4/BGLR/build/vignette.rds |binary BGLR-1.0.4/BGLR/man/BGLR.Rd | 5 BGLR-1.0.4/BGLR/man/wheat.A.Rd | 7 BGLR-1.0.4/BGLR/man/wheat.Rd | 6 BGLR-1.0.4/BGLR/src/util_sample.c | 420 ++++++++++++++++++++++++++++++++++-- 12 files changed, 771 insertions(+), 141 deletions(-)
Title: Extended Model Formulas
Description: Infrastructure for extended formulas with multiple parts on the
right-hand side and/or multiple responses on the left-hand side.
Author: Achim Zeileis [aut, cre],
Yves Croissant [aut]
Maintainer: Achim Zeileis
Diff between Formula versions 1.2-0 dated 2015-01-19 and 1.2-1 dated 2015-04-07
DESCRIPTION | 8 - MD5 | 12 +- NEWS | 10 ++ R/Formula.R | 145 ++++++++++++++++++++++-------------- inst/doc/Formula.pdf |binary man/model.frame.Formula.Rd | 30 +++++-- tests/Examples/Formula-Ex.Rout.save | 22 +++-- 7 files changed, 148 insertions(+), 79 deletions(-)
Title: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Description: Functions for the detection of footprints of selection on
dense SNP data using Extended Homozygosity Haplotype (EHH)
based tests. The package includes computation of EHH, iHS
(within population) and Rsb (across pairs of populations)
statistics. Various plotting functions are also included to
facilitate visualization and interpretation of the results.
Author: Mathieu Gautier and Renaud Vitalis
Maintainer: Mathieu Gautier
Diff between rehh versions 1.11 dated 2013-08-26 and 1.12 dated 2015-04-07
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 3 +++ R/data2haplohh.R | 4 ++-- inst/CITATION | 5 ++--- 6 files changed, 21 insertions(+), 15 deletions(-)
Title: Loading Google Adwords Data into R
Description: The aim of RAdwords is loading Adwords data into R. Therefore the
package implements three main features. First, the package provides an
authentication process for R with the Adwords API via OAUTH2. Second, the
package offers an interface to apply the Adwords query language in R and
query the Adwords API with ad-hoc reports. Third, the received data are
transformed into suitable data formats for further data processing and data
analysis.
Author: Johannes Burkhardt
Maintainer: Johannes Burkhardt
Diff between RAdwords versions 0.1.2 dated 2015-03-27 and 0.1.3 dated 2015-04-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 7 +++++++ R/getAuth.R | 3 ++- R/getData.R | 4 +++- R/loadToken.R | 2 +- R/refreshToken.R | 3 ++- 7 files changed, 24 insertions(+), 13 deletions(-)
Title: Missing Data Imputation and Model Checking
Description: R functions for performing multiple imputation with several checks.
Author:
Andrew Gelman
Maintainer: Yu-Sung Su
Diff between mi versions 0.10-1 dated 2015-04-06 and 0.10-2 dated 2015-04-07
CHANGELOG | 2 - DESCRIPTION | 12 +++++------ MD5 | 16 +++++++-------- NAMESPACE | 16 ++++++++------- R/AllGeneric.R | 57 +++++++++++++++++++++++-------------------------------- R/coef.R | 36 +++++++++++++++++----------------- R/fitted.R | 10 ++++----- R/sigma.hat.R | 10 ++++----- man/mi.method.Rd | 18 ++++++++--------- 9 files changed, 85 insertions(+), 92 deletions(-)
Title: Interface to Dygraphs Interactive Time Series Charting Library
Description: An R interface to the dygraphs JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire
Diff between dygraphs versions 0.4.2 dated 2015-03-04 and 0.4.3 dated 2015-04-07
dygraphs-0.4.2/dygraphs/README.md |only dygraphs-0.4.3/dygraphs/DESCRIPTION | 19 +- dygraphs-0.4.3/dygraphs/MD5 | 17 +- dygraphs-0.4.3/dygraphs/NEWS | 11 + dygraphs-0.4.3/dygraphs/R/range-selector.R | 3 dygraphs-0.4.3/dygraphs/inst/examples/examples.html | 10 - dygraphs-0.4.3/dygraphs/inst/htmlwidgets/dygraphs.js | 142 +++++++++++++---- dygraphs-0.4.3/dygraphs/inst/htmlwidgets/dygraphs.yaml | 4 dygraphs-0.4.3/dygraphs/inst/htmlwidgets/lib/jquery |only dygraphs-0.4.3/dygraphs/man/dyRangeSelector.Rd | 3 10 files changed, 158 insertions(+), 51 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing 'lm', 'glm', 'svy.glm', 'merMod' and 'polr' outputs.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre],
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vicent Dorie [ctb]
Maintainer: Yu-Sung Su
Diff between arm versions 1.8-03 dated 2015-04-03 and 1.8-4 dated 2015-04-07
arm-1.8-03/arm/R/model.matrix.bayes.R |only arm-1.8-03/arm/man/model.matrix.bayes.Rd |only arm-1.8-4/arm/CHANGELOG | 7 ++ arm-1.8-4/arm/DESCRIPTION | 12 ++-- arm-1.8-4/arm/MD5 | 36 +++++++------- arm-1.8-4/arm/NAMESPACE | 40 +++++++++------ arm-1.8-4/arm/R/AllGeneric.R | 42 +++------------- arm-1.8-4/arm/R/balance.R | 28 +++++------ arm-1.8-4/arm/R/coef.R | 78 +++++++++++-------------------- arm-1.8-4/arm/R/corrplot.R | 18 +++---- arm-1.8-4/arm/R/fitted.R | 14 ++--- arm-1.8-4/arm/R/model.matrixBayes.R |only arm-1.8-4/arm/R/sigma.hat.R | 78 ++++++------------------------- arm-1.8-4/arm/R/traceplot.R | 48 +++++++++---------- arm-1.8-4/arm/R/triangleplot.R | 46 +++++++++--------- arm-1.8-4/arm/man/model.matrixBayes.Rd |only arm-1.8-4/arm/man/multicomp.plot.Rd | 24 ++++----- arm-1.8-4/arm/man/se.coef.Rd | 22 ++++---- arm-1.8-4/arm/man/sigma.hat.Rd | 32 ++++++------ arm-1.8-4/arm/man/sim.Rd | 38 +++++++-------- arm-1.8-4/arm/man/traceplot.Rd | 6 +- 21 files changed, 247 insertions(+), 322 deletions(-)
Title: Quantitative Analysis Made Accessible
Description: Contains a number of functions that serve
two goals: first, make R more accessible to people migrating from
SPSS by adding a number of functions that behave roughly like their
SPSS equivalents; and second, make a number of slightly more
advanced functions more user friendly to relatively novice users.
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters
Diff between userfriendlyscience versions 0.2-1 dated 2015-03-23 and 0.2-2 dated 2015-04-07
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 5 +++++ R/basicSPSStranslationFunctions.r | 3 ++- R/meanDiff.r | 24 +++++++++++++++++++----- R/oneway.r | 2 +- R/scaleReliability.r | 21 ++++++++------------- man/userfriendlyscience-meanDiff.Rd | 5 ++++- man/userfriendlyscience-package.Rd | 4 ++-- 10 files changed, 61 insertions(+), 36 deletions(-)
More information about userfriendlyscience at CRAN
Permanent link
Title: A Collection of Small Text Corpora of Interesting Data
Description: A collection of small text corpora of interesting data.
It contains all data sets from https://github.com/dariusk/corpora.
Some examples:
names of animals: birds, dinosaurs, dogs; foods: beer categories,
pizza toppings; geography: English towns, rivers, oceans;
humans: authors, US presidents, occupations; science: elements,
planets; words: adjectives, verbs, proverbs, US president quotes.
Author: Darius Kazemi, Matthew Rothenberg, Karl Swedberg, Matthew Hokanson,
Nathan Lachenmyer, Aaron Marriner, Mark Sample, Casey Kolderup,
Nathaniel Mitchell, Daniel D. Beck, Mike Nowak, Ryan Freebern,
Ross Barclay, Ross Binden, Justin Alford, Cole Willsea,
Andrew Gorman, Javier Arce, Patrick Rodriguez,
Liam Cooke, Will Hankinson, K. Adam White, Garrett Miller, Zac Moody,
Jordan Killpack, Brian Jones, Greg Borenstein, Noah Swartz, Nathan Black,
Russell Horton, Mark Wunsch, Kay Belardinelli, Colin Mitchell,
Michael Dewberry, Joe Mahoney
Maintainer: Gabor Csardi
Diff between rcorpora versions 1.0.0 dated 2015-04-07 and 1.0.1 dated 2015-04-07
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- R/corpora.R | 2 +- build/rcorpora.pdf |binary man/corpora.Rd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Stereo Camera Calibration and Reconstruction
Description: Functions for the collection of 3D points and curves using a stereo camera setup.
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen
Diff between StereoMorph versions 1.3 dated 2015-02-12 and 1.4 dated 2015-04-07
StereoMorph-1.3/StereoMorph/inst/extdata/apps/initial_parameters.R |only StereoMorph-1.4/StereoMorph/DESCRIPTION | 11 StereoMorph-1.4/StereoMorph/MD5 | 33 StereoMorph-1.4/StereoMorph/NAMESPACE | 3 StereoMorph-1.4/StereoMorph/R/digitizeImage.R | 262 ++ StereoMorph-1.4/StereoMorph/R/listToJSONStr.R |only StereoMorph-1.4/StereoMorph/R/readShapes.R |only StereoMorph-1.4/StereoMorph/R/readXML4R.R |only StereoMorph-1.4/StereoMorph/inst/CITATION |only StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/digitize_image.html | 85 StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/digitize_image_pre.html | 69 StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/initial_parameters.R | 70 StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/server.R | 352 +++ StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/ui.R | 2 StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/www/digitize_image.css | 129 + StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/www/digitize_image.js | 969 ++++++++-- StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/www/help.html | 44 StereoMorph-1.4/StereoMorph/inst/extdata/apps/digitizeImage/www/preserve_directory.txt |only StereoMorph-1.4/StereoMorph/man/StereoMorph-package.Rd | 11 StereoMorph-1.4/StereoMorph/man/digitizeImage.Rd | 19 StereoMorph-1.4/StereoMorph/man/readShapes.Rd |only 21 files changed, 1720 insertions(+), 339 deletions(-)
Title: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Description: Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages.
Author: Konstantin A. Blagodatskikh [cre, aut],
Stefan Roediger [aut],
Michal Burdukiewicz [aut]
Maintainer: Konstantin A. Blagodatskikh
Diff between RDML versions 0.4-2 dated 2014-09-10 and 0.8-2 dated 2015-04-07
RDML-0.4-2/RDML/R/summary.RDML.R |only RDML-0.4-2/RDML/inst/RDML_logo.png |only RDML-0.4-2/RDML/man/RDML.Rd |only RDML-0.4-2/RDML/man/summary-RDML_object.Rd |only RDML-0.8-2/RDML/CHANGELOG | 63 + RDML-0.8-2/RDML/DESCRIPTION | 37 - RDML-0.8-2/RDML/MD5 | 30 RDML-0.8-2/RDML/NAMESPACE | 29 RDML-0.8-2/RDML/R/RDML.AsDendrogram.R |only RDML-0.8-2/RDML/R/RDML.AsTable.R |only RDML-0.8-2/RDML/R/RDML.GetFData.R |only RDML-0.8-2/RDML/R/RDML.Merge.R |only RDML-0.8-2/RDML/R/RDML.R | 1026 ++++++++++++++++++----------- RDML-0.8-2/RDML/R/RDML.SetFData.R |only RDML-0.8-2/RDML/R/RDML.asserts.R |only RDML-0.8-2/RDML/R/RDML.init.R |only RDML-0.8-2/RDML/R/names.RDML.R |only RDML-0.8-2/RDML/README.md | 52 - RDML-0.8-2/RDML/man/RDML.class.Rd |only RDML-0.8-2/RDML/man/asdendrogram-method.Rd |only RDML-0.8-2/RDML/man/astable-method.Rd |only RDML-0.8-2/RDML/man/getfdata-method.Rd |only RDML-0.8-2/RDML/man/merge-method.Rd |only RDML-0.8-2/RDML/man/names.RDML.Rd |only RDML-0.8-2/RDML/man/new-method.Rd |only RDML-0.8-2/RDML/man/setfdata-method.Rd |only 26 files changed, 795 insertions(+), 442 deletions(-)