Thu, 09 Apr 2015

Package Thermimage updated to version 1.0.1 with previous version 1.0 dated 2015-04-02

Title: Functions for Handling Thermal Images
Description: A collection of functions and routines for inputting thermal image video files, plotting and converting binary raw data into estimates of temperature.
Author: Glenn J. Tattersall, PhD
Maintainer: Glenn J. Tattersall

Diff between Thermimage versions 1.0 dated 2015-04-02 and 1.0.1 dated 2015-04-09

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 7 files changed, 88 insertions(+), 31 deletions(-)

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Package retrosheet updated to version 1.0.1 with previous version 1.0 dated 2015-04-08

Title: Import Professional Baseball Data from 'Retrosheet'
Description: A collection of tools for importing the professional baseball data available from http://www.retrosheet.org. In particular, the event (play-by-play) files can be especially difficult to parse. This package does the parsing on those files, returning the requested event as a structured R object. It will also retrieve the game-log, roster, and schedule files if requested.
Author: Richard Scriven [aut, cre]
Maintainer: Richard Scriven

Diff between retrosheet versions 1.0 dated 2015-04-08 and 1.0.1 dated 2015-04-09

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 8 files changed, 48 insertions(+), 48 deletions(-)

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New package RandomFieldsUtils with initial version 0.0.1
Package: RandomFieldsUtils
Version: 0.0.1
Title: Utilities for the Simulation and Analysis of Random Fields
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb]
Maintainer: Martin Schlather
Depends: R (>= 3.1)
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
License: GPL (>= 3)
URL: http://ms.math.uni-mannheim.de/de/publications/software
Packaged: 2015-04-09 19:17:44 UTC; schlather
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-04-10 01:24:12

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Package pocrm updated to version 0.9 with previous version 0.8 dated 2014-07-24

Title: Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Description: Provides functions to implement and simulate the partial order continual reassessment method (PO-CRM) for use in Phase I trials of combinations of agents. Provides a function for generating a set of initial guesses (skeleton) for the toxicity probabilities at each combination that correspond to the set of possible orderings of the toxicity probabilities specified by the user.
Author: Nolan A. Wages
Maintainer: "Varhegyi, Nikole (nev4g)"

Diff between pocrm versions 0.8 dated 2014-07-24 and 0.9 dated 2015-04-09

 DESCRIPTION |   13 ++++++-------
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Package leafletR updated to version 0.3-2 with previous version 0.3-1 dated 2014-10-23

Title: Interactive Web-Maps Based on the Leaflet JavaScript Library
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. leafletR provides basic web-mapping functionality to combine vector data and online map tiles from different sources. See for more information on Leaflet.
Author: Christian Graul, with contributions from Francois Guillem
Maintainer: Christian Graul

Diff between leafletR versions 0.3-1 dated 2014-10-23 and 0.3-2 dated 2015-04-09

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Package import updated to version 1.0.2 with previous version 1.0.1 dated 2015-03-10

Title: An Import Mechanism for R
Description: This is an alternative mechanism for importing objects from packages. The syntax allows for importing multiple objects from a package with a single command in an expressive way. The import package bridges some of the gap between using library (or require) and direct (single-object) imports. Furthermore the imported objects are not placed in the current environment.
Author: Stefan Milton Bache
Maintainer: Stefan Milton Bache

Diff between import versions 1.0.1 dated 2015-03-10 and 1.0.2 dated 2015-04-09

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 10 files changed, 184 insertions(+), 94 deletions(-)

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Package hiddenf updated to version 1.3 with previous version 1.2 dated 2015-03-25

Title: The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity
Description: Computes the F-test and Bonferroni-adjusted p-value for a test of interaction in two-factor studies. Reports corresponding interaction plot and analysis of variance table and p-values from several other tests of non-additivity.
Author: Jason A. Osborne, Christopher T. Franck and Bongseog Choi
Maintainer: Jason A. Osborne

Diff between hiddenf versions 1.2 dated 2015-03-25 and 1.3 dated 2015-04-09

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Package dataRetrieval updated to version 2.2.0 with previous version 2.1.2 dated 2015-02-20

Title: Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (EPA) water quality and hydrology data from web services. USGS web services are discovered from the National Water Information System (NWIS) tools. Both EPA and USGS water quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre], David Lorenz [aut]
Maintainer: Laura DeCicco

Diff between dataRetrieval versions 2.1.2 dated 2015-02-20 and 2.2.0 dated 2015-04-09

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Package chipPCR updated to version 0.0.8-10 with previous version 0.0.8-8 dated 2015-03-12

Title: Toolkit of Helper Functions to Pre-Process Amplification Data
Description: A collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. Contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experimental nucleic acid amplification systems (VideoScan HCU, capillary convective PCR (ccPCR)) and commercial systems are included. Amplification curves were generated by helicase dependent amplification (HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used.
Author: Stefan Roediger [cre, aut], Michal Burdukiewicz [aut], Konstantin A. Blagodatskikh [ctb]
Maintainer: Stefan Roediger

Diff between chipPCR versions 0.0.8-8 dated 2015-03-12 and 0.0.8-10 dated 2015-04-09

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Package reader updated to version 1.0.5 with previous version 1.0.4 dated 2014-09-01

Title: Suite of Functions to Flexibly Read Data from Files
Description: A set of functions to simplify reading data from files. The main function, reader(), should read most common R datafile types without needing any parameters except the filename. Other functions provide simple ways of handling file paths and extensions, and automatically detecting file format and structure.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper

Diff between reader versions 1.0.4 dated 2014-09-01 and 1.0.5 dated 2015-04-09

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Package mclust updated to version 5.0.0 with previous version 4.4 dated 2014-09-16

Title: Normal Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Description: Normal Mixture Modelling fitted via EM algorithm for Model-Based Clustering, Classification, and Density Estimation, including Bayesian regularization.
Author: Chris Fraley [aut], Adrian E. Raftery [aut], Luca Scrucca [aut, cre], Thomas Brendan Murphy [ctb], Michael Fop [ctb]
Maintainer: Luca Scrucca

Diff between mclust versions 4.4 dated 2014-09-16 and 5.0.0 dated 2015-04-09

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New package emov with initial version 0.1
Package: emov
Version: 0.1
Date: 2015-04-09
Title: Eye Movement Analysis Package for Fixation and Saccade Detection
Author: Simon Schwab
Maintainer: Simon Schwab
Depends: R (>= 1.8.0)
Description: An R package for fixation and saccade detection in eye movement recordings. Eye movements consist of alternating saccades and fixations. This package implements a dispersion-based algorithm (I-DT) proposed by Salvucci & Goldberg (2000) which detects fixation duration and position.
License: GPL-3
URL: https://github.com/schw4b/emov
BugReports: https://github.com/schw4b/emov/issues
Packaged: 2015-04-09 08:37:19 UTC; simon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-09 12:04:18

More information about emov at CRAN
Permanent link

Package dpcR updated to version 0.1.4.0 with previous version 0.1.3.3 dated 2015-02-24

Title: Digital PCR Analysis
Description: Analysis, visualisation and simulation of digital PCR experiments.
Author: Michal Burdukiewicz [cre, aut], Stefan Roediger [aut], Bart Jacobs [aut], Piotr Sobczyk [ctb]
Maintainer: Michal Burdukiewicz

Diff between dpcR versions 0.1.3.3 dated 2015-02-24 and 0.1.4.0 dated 2015-04-09

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More information about dpcR at CRAN
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New package denovolyzeR with initial version 0.1.0
Package: denovolyzeR
Title: Statistical Analyses of De Novo Genetic Variants
Version: 0.1.0
Date: 2015-04-01
Authors@R: c( person("James","Ware",email="j.ware@imperial.ac.uk",role=c("aut","cre")), person("Jason","Homsy",role="ctb"), person("Kaitlin","Samocha",role="ctb") )
Description: An integrated toolset for the analysis of de novo (sporadic) genetic sequence variants. denovolyzeR implements a mutational model that estimates the probability of a de novo genetic variant arising in each human gene, from which one can infer the expected number of de novo variants in a given population size. Observed variant frequencies can then be compared against expectation in a Poisson framework. denovolyzeR provides a suite of functions to implement these analyses for the interpretation of de novo variation in human disease.
Depends: R (>= 3.1.0)
Imports: dplyr (>= 0.3), reshape (>= 0.8)
License: GPL-3
LazyData: true
Suggests: knitr
VignetteBuilder: knitr
URL: http://jamesware.github.io/denovolyzeR
BugReports: http://github.com/jamesware/denovolyzeR/issues
Packaged: 2015-04-09 06:35:00 UTC; jamesware
Author: James Ware [aut, cre], Jason Homsy [ctb], Kaitlin Samocha [ctb]
Maintainer: James Ware
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-09 12:03:44

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Package biosignalEMG updated to version 1.0.2 with previous version 1.0 dated 2015-03-20

Title: Standard Processing Tools for Electromyogram Signals
Description: Data processing tools for electromyogram (EMG) signals to compute the rectified, integrated and averaged EMG. Tools to plot the ensemble average of the EMG.
Author: J.A. Guerrero, J.E. Macias-Diaz
Maintainer: Antonio Guerrero

Diff between biosignalEMG versions 1.0 dated 2015-03-20 and 1.0.2 dated 2015-04-09

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 biosignalEMG-1.0.2/biosignalEMG/R/synthetic.emg.R           |   82 ++++----
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Package igraphdata updated to version 0.2.2 with previous version 0.2 dated 2014-02-04

Title: A Collection of Network Data Sets for the Igraph Package
Description: A small collection of various network data sets, to use with the igraph package. They also work with the igraph0 package.
Author: Gabor Csardi
Maintainer: Gabor Csardi

Diff between igraphdata versions 0.2 dated 2014-02-04 and 0.2.2 dated 2015-04-09

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Package expsmooth updated to version 2.3 with previous version 2.02 dated 2012-10-30

Title: Data Sets from "Forecasting with Exponential Smoothing"
Description: Data sets from the book "Forecasting with exponential smoothing: the state space approach" by Hyndman, Koehler, Ord and Snyder (Springer, 2008).
Author: Rob J Hyndman
Maintainer: Rob J Hyndman

Diff between expsmooth versions 2.02 dated 2012-10-30 and 2.3 dated 2015-04-09

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 DESCRIPTION     |   20 ++++++++++----------
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 man/gasprice.Rd |   10 ++++++----
 man/ukcars.Rd   |    2 +-
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