Tue, 14 Apr 2015

Package runjags updated to version 2.0.1-4 with previous version 2.0.1-2 dated 2015-04-12

Title: Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
Description: User-friendly interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A JAGS extension module provides additional distributions including the Pareto family of distributions, the DuMouchel prior and the half-Cauchy prior.
Author: Matthew Denwood [aut, cre], Martyn Plummer [cph] (Copyright holder of the code in /src/distributions/jags, src/distributions/DPar1.*, configure.ac, and original copyright holder of some modified code where indicated)
Maintainer: Matthew Denwood

Diff between runjags versions 2.0.1-2 dated 2015-04-12 and 2.0.1-4 dated 2015-04-14

 DESCRIPTION             |   12 +--
 MD5                     |   14 +--
 build/vignette.rds      |binary
 inst/doc/UserGuide.pdf  |binary
 inst/doc/quickjags.R    |    9 --
 inst/doc/quickjags.Rmd  |   30 ++------
 inst/doc/quickjags.html |  171 +++++++++++++++++++-----------------------------
 vignettes/quickjags.Rmd |   30 ++------
 8 files changed, 99 insertions(+), 167 deletions(-)

More information about runjags at CRAN
Permanent link

New package SPRT with initial version 1.0
Package: SPRT
Type: Package
Title: Wald's Sequential Probability Ratio Test
Version: 1.0
Date: 2015-04-14
Author: Stephane Mikael Bottine
Maintainer: Stephane Mikael Bottine
Description: Perform Wald's Sequential Probability Ratio Test on variables with a Normal, Bernoulli, Exponential and Poisson distribution. Plot acceptance and continuation regions, or create your own with the help of closures.
License: BSD_2_clause + file LICENSE
Packaged: 2015-04-14 15:26:52 UTC; BOTTINES
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-15 01:01:11

More information about SPRT at CRAN
Permanent link

Package bild updated to version 1.1-5 with previous version 1.1-3 dated 2013-02-18

Title: BInary Longitudinal Data
Description: Performs logistic regression for binary longitudinal data, allowing for serial dependence among observations from a given individual and a random intercept term. Estimation is via maximization of the exact likelihood of a suitably defined model. Missing values and unbalanced data are allowed, with some restrictions.
Author: M. Helena Gonçalves, M. Salomé Cabral and Adelchi Azzalini, apart from a set of Fortran-77 subroutines written by R. Piessens and E. de Doncker, belonging to the suite "Quadpack".
Maintainer: M. Helena Gonçalves

Diff between bild versions 1.1-3 dated 2013-02-18 and 1.1-5 dated 2015-04-14

 bild-1.1-3/bild/INDEX                     |only
 bild-1.1-3/bild/history.txt               |only
 bild-1.1-5/bild/DESCRIPTION               |   27 ++---
 bild-1.1-5/bild/MD5                       |   29 ++---
 bild-1.1-5/bild/NEWS                      |only
 bild-1.1-5/bild/inst/CITATION             |  156 +++++++++++++++++++-----------
 bild-1.1-5/bild/man/airpollution.rd       |    9 -
 bild-1.1-5/bild/man/anova-methods.Rd      |   30 +++--
 bild-1.1-5/bild/man/bild-class.Rd         |    2 
 bild-1.1-5/bild/man/bild-package.Rd       |    4 
 bild-1.1-5/bild/man/bild.Rd               |   30 +++--
 bild-1.1-5/bild/man/bildIntegrate.Rd      |   12 +-
 bild-1.1-5/bild/man/locust.rd             |    7 -
 bild-1.1-5/bild/man/muscatine.rd          |    4 
 bild-1.1-5/bild/man/plot-methods.Rd       |   23 ++--
 bild-1.1-5/bild/man/summary-methods.Rd    |    4 
 bild-1.1-5/bild/man/summary.bild-class.Rd |    4 
 17 files changed, 198 insertions(+), 143 deletions(-)

More information about bild at CRAN
Permanent link

New package sivipm with initial version 1.0-0
Package: sivipm
Version: 1.0-0
Date: 2015-04-15
Title: Sensitivity Indices with Dependent Inputs
Author: A. Bouvier [aut], J.-P. Gauchi [aut, cre], E. Volatier [ctb]
Maintainer: Annie Bouvier
Depends: methods, seqinr
Description: Sensitivity indices with dependent correlated inputs, using a method based on PLS regression.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: yes
Packaged: 2015-04-14 11:34:27 UTC; abouvier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-14 16:28:43

More information about sivipm at CRAN
Permanent link

New package readxl with initial version 0.1.0
Package: readxl
Title: Read Excel Files
Version: 0.1.0
Authors@R: c( person("Hadley", "Wickham", ,"hadley@rstudio.com", role = c("aut", "cre")), person("RStudio", role = "cph", comment = "Copyright holder of all R code and all C/C++ code without explicit copyright attribution"), person("Marcin", "Kalicinski", role = c("ctb", "cph"), comment = "Author of included RapidXML code"), person("Komarov Valery", role = c("ctb", "cph"), comment = "Author of included libxls code"), person("Christophe Leitienne", role = c("ctb", "cph"), comment = "Author of included libxls code"), person("Bob Colbert", role = c("ctb", "cph"), comment = "Author of included libxls code"), person("David Hoerl", role = c("ctb", "cph"), comment = "Author of included libxls code") )
Description: Import excel files into R. Supports '.xls' via the embedded 'libxls' C library (http://sourceforge.net/projects/libxls/) and '.xlsx' via the embedded 'RapidXML' C++ library (http://rapidxml.sourceforge.net). Works on Windows, Mac and Linux without external dependencies.
License: GPL-3 + file LICENSE
LazyData: true
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.5)
Suggests: testthat
Packaged: 2015-04-14 13:24:38 UTC; hadley
Author: Hadley Wickham [aut, cre], RStudio [cph] (Copyright holder of all R code and all C/C++ code without explicit copyright attribution), Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Komarov Valery [ctb, cph] (Author of included libxls code), Christophe Leitienne [ctb, cph] (Author of included libxls code), Bob Colbert [ctb, cph] (Author of included libxls code), David Hoerl [ctb, cph] (Author of included libxls code)
Maintainer: Hadley Wickham
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-04-14 16:28:42

More information about readxl at CRAN
Permanent link

Package openair updated to version 1.5 with previous version 1.1-5 dated 2015-02-09

Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre], Karl Ropkins [aut]
Maintainer: David Carslaw

Diff between openair versions 1.1-5 dated 2015-02-09 and 1.5 dated 2015-04-14

 DESCRIPTION                |   16 
 MD5                        |  185 +-
 NAMESPACE                  |  170 +-
 NEWS                       |only
 R/GoogleMapsPlot.R         | 1894 ++++++++++++++---------------
 R/TaylorDiagram.R          | 1278 ++++++++++---------
 R/TheilSen.R               | 1172 +++++++++---------
 R/airbaseFindCode.R        |  270 ++--
 R/airbaseInfo.R            |   88 -
 R/airbaseSplice.R          |  180 +-
 R/airbaseStats.R           |  674 +++++-----
 R/aqStats.R                |   48 
 R/calcFno2.R               |  586 ++++-----
 R/calendarPlot.R           | 1020 +++++++--------
 R/corPlot.R                |  800 ++++++------
 R/cutData.R                |   16 
 R/getMeta.R                |   14 
 R/import.R                 |  392 +++---
 R/importADMS.R             | 1974 +++++++++++++++---------------
 R/importAirbase.R          |  270 ++--
 R/importKCL.R              | 1191 +++++++++---------
 R/linearRelation.R         |  816 ++++++------
 R/openair-package.R        |  180 +-
 R/percentileRose.R         | 1112 ++++++++---------
 R/polarAnnulus.R           | 1470 +++++++++++-----------
 R/polarCluster.R           |  708 +++++-----
 R/polarFreq.R              |  922 +++++++-------
 R/polarPlot.R              | 1746 +++++++++++++-------------
 R/scatterPlot.R            | 2930 ++++++++++++++++++++++-----------------------
 R/smoothTrend.R            |  954 +++++++-------
 R/timeAverage.R            | 1012 +++++++--------
 R/timePlot.R               | 1242 +++++++++----------
 R/timeVariation.R          | 2067 ++++++++++++++++---------------
 R/trajLevel.R              |  889 ++++++-------
 R/trajPlot.R               |  624 ++++-----
 R/trendLevel.R             | 1202 +++++++++---------
 R/utilities.R              | 2030 +++++++++++++++----------------
 R/windRose.R               | 1482 +++++++++++-----------
 README.md                  |  326 ++---
 data/mydata.RData          |binary
 inst/CITATION              |   27 
 man/GoogleMapsPlot.Rd      |  438 +++---
 man/TaylorDiagram.Rd       |  550 ++++----
 man/TheilSen.Rd            |  546 ++++----
 man/airbaseFindCode.Rd     |  172 +-
 man/airbaseInfo.Rd         |   84 -
 man/airbaseSplice.Rd       |  122 -
 man/airbaseStats.Rd        |  536 ++++----
 man/aqStats.Rd             |  194 +-
 man/calcFno2.Rd            |  224 +--
 man/calcPercentile.Rd      |  130 -
 man/calendarPlot.Rd        |  404 +++---
 man/conditionalEval.Rd     |  398 +++---
 man/conditionalQuantile.Rd |  330 ++---
 man/corPlot.Rd             |  306 ++--
 man/cutData.Rd             |  318 ++--
 man/drawOpenKey.Rd         |  366 ++---
 man/import.Rd              |  280 ++--
 man/importADMS.Rd          |  318 ++--
 man/importAURN.Rd          |  670 +++++-----
 man/importAURNCsv.Rd       |  356 ++---
 man/importAirbase.Rd       |  166 +-
 man/importKCL.Rd           |  972 +++++++-------
 man/importMeta.Rd          |  138 +-
 man/importSAQN.Rd          |  356 ++---
 man/importTraj.Rd          |  300 ++--
 man/kernelExceed.Rd        |  304 ++--
 man/linearRelation.Rd      |  292 ++--
 man/modStats.Rd            |  298 ++--
 man/mydata.Rd              |  100 -
 man/openColours.Rd         |  176 +-
 man/openair.Rd             |  190 +-
 man/percentileRose.Rd      |  386 ++---
 man/polarAnnulus.Rd        |  524 ++++----
 man/polarCluster.Rd        |  360 ++---
 man/polarFreq.Rd           |  432 +++---
 man/polarPlot.Rd           |  810 ++++++------
 man/quickText.Rd           |   90 -
 man/rollingMean.Rd         |  130 -
 man/scatterPlot.Rd         |  708 +++++-----
 man/selectByDate.Rd        |  166 +-
 man/selectRunning.Rd       |  114 -
 man/smoothTrend.Rd         |  448 +++---
 man/splitByDate.Rd         |   84 -
 man/summaryPlot.Rd         |  324 ++--
 man/timeAverage.Rd         |  392 +++---
 man/timePlot.Rd            |  582 ++++----
 man/timeProp.Rd            |  312 ++--
 man/timeVariation.Rd       |  615 ++++-----
 man/trajCluster.Rd         |  270 ++--
 man/trajLevel.Rd           |  522 ++++----
 man/trajPlot.Rd            |  318 ++--
 man/trendLevel.Rd          |  402 +++---
 man/windRose.Rd            |  585 ++++----
 94 files changed, 26342 insertions(+), 26243 deletions(-)

More information about openair at CRAN
Permanent link

Package InvariantCausalPrediction updated to version 0.3-1 with previous version 0.3 dated 2015-04-13

Title: Invariant Causal Prediction
Description: Confidence intervals for causal effects, using data collected in different experimental or environmental conditions. Hidden variables can be included in the model with a more experimental version.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen

Diff between InvariantCausalPrediction versions 0.3 dated 2015-04-13 and 0.3-1 dated 2015-04-14

 InvariantCausalPrediction-0.3-1/InvariantCausalPrediction/DESCRIPTION          |    8 ++++----
 InvariantCausalPrediction-0.3-1/InvariantCausalPrediction/MD5                  |    8 ++++----
 InvariantCausalPrediction-0.3-1/InvariantCausalPrediction/NAMESPACE            |    2 +-
 InvariantCausalPrediction-0.3-1/InvariantCausalPrediction/R/hiddenICE.R        |only
 InvariantCausalPrediction-0.3-1/InvariantCausalPrediction/man/hiddenICE.Rd     |only
 InvariantCausalPrediction-0.3/InvariantCausalPrediction/R/feedbackNetwork.R    |only
 InvariantCausalPrediction-0.3/InvariantCausalPrediction/man/feedbackNetwork.Rd |only
 7 files changed, 9 insertions(+), 9 deletions(-)

More information about InvariantCausalPrediction at CRAN
Permanent link

Package flexsurv updated to version 0.6 with previous version 0.5 dated 2014-09-22

Title: Flexible Parametric Survival and Multi-State Models
Description: Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.
Author: Christopher Jackson
Maintainer: Christopher Jackson

Diff between flexsurv versions 0.5 dated 2014-09-22 and 0.6 dated 2015-04-14

 DESCRIPTION                       |   16 
 MD5                               |   65 
 NAMESPACE                         |    7 
 R/Gompertz.R                      |    1 
 R/Llogis.R                        |only
 R/flexsurvreg.R                   | 1858 ++++++++++++-----------
 R/mstate.R                        |  184 +-
 R/utils.R                         |   17 
 build/vignette.rds                |binary
 inst/NEWS                         |   41 
 inst/doc/flexsurv-examples.R      |   48 
 inst/doc/flexsurv-examples.pdf    |binary
 inst/doc/flexsurv.R               |  489 ++----
 inst/doc/flexsurv.pdf             |binary
 man/Llogis.Rd                     |only
 man/flexsurvreg.Rd                |   17 
 man/flexsurvspline.Rd             |   10 
 man/msfit.flexsurvreg.Rd          |   39 
 man/pars.fmsm.Rd                  |only
 man/pmatrix.fs.Rd                 |    7 
 man/pmatrix.simfs.Rd              |    9 
 man/sim.fmsm.Rd                   |   17 
 man/summary.flexsurvreg.Rd        |   11 
 man/totlos.fs.Rd                  |    7 
 man/totlos.simfs.Rd               |    9 
 tests/testthat/test_custom.R      |   54 
 tests/testthat/test_deriv.R       |    7 
 tests/testthat/test_flexsurvreg.R |   47 
 tests/testthat/test_mstate.R      |   78 
 tests/testthat/test_outputs.R     |    4 
 tests/testthat/test_spline.R      |    7 
 tests/testthat/test_utils.R       |   38 
 vignettes/flexsurv-examples.Rnw   |   78 
 vignettes/flexsurv.Rnw            | 3039 ++++++++++++++++++++------------------
 vignettes/flexsurv.bib            |  224 +-
 35 files changed, 3575 insertions(+), 2853 deletions(-)

More information about flexsurv at CRAN
Permanent link

Package CRTSize updated to version 1.0 with previous version 0.4 dated 2015-02-02

Title: Sample Size Estimation Functions for Cluster Randomized Trials
Description: Sample size estimation in cluster (group) randomized trials. Contains traditional power-based methods, empirical smoothing (Rotondi and Donner, 2009), and updated meta-analysis techniques (Rotondi and Donner, 2012).
Author: Michael A Rotondi
Maintainer: Michael A Rotondi

Diff between CRTSize versions 0.4 dated 2015-02-02 and 1.0 dated 2015-04-14

 DESCRIPTION        |   10 +++++-----
 MD5                |   10 +++++-----
 R/n4incidence.R    |   13 ++++++++-----
 R/n4means.R        |    4 ++--
 R/n4props.R        |    2 +-
 man/n4meansMeta.Rd |    4 ++--
 6 files changed, 23 insertions(+), 20 deletions(-)

More information about CRTSize at CRAN
Permanent link

Package Rvcg updated to version 0.11 with previous version 0.10.1 dated 2014-12-22

Title: Manipulations of Triangular Meshes Based on the VCGLIB API
Description: Operations on triangular meshes based on VCGLIB. This package integrates nicely with the R-package "rgl" to render the meshes processed by Rvcg. The Visualization and Computer Graphics Library (VCG for short) is an open source portable C++ templated library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes. The library, composed by more than 100k lines of code, is released under the GPL license, and it is the base of most of the software tools of the Visual Computing Lab of the Italian National Research Council Institute ISTI (http://vcg.isti.cnr.it), like metro and MeshLab. The vcglib source is pulled from trunk (svn://svn.code.sf.net/p/vcg/code/trunk/vcglib) and patched to work with options determined by the configure script as well as to work with the header files included by RcppEigen.
Author: Stefan Schlager; the authors of VCGLIB for the included version of the code
Maintainer: Stefan Schlager

Diff between Rvcg versions 0.10.1 dated 2014-12-22 and 0.11 dated 2015-04-14

 Rvcg-0.10.1/Rvcg/src/vcglib/vcg/space/index/index2D                                                 |only
 Rvcg-0.10.1/Rvcg/src/vcglib/wrap/miq                                                                |only
 Rvcg-0.11/Rvcg/DESCRIPTION                                                                          |    8 
 Rvcg-0.11/Rvcg/MD5                                                                                  |  342 
 Rvcg-0.11/Rvcg/NAMESPACE                                                                            |    2 
 Rvcg-0.11/Rvcg/R/Rvcg-package.R                                                                     |    4 
 Rvcg-0.11/Rvcg/R/vcgClost.r                                                                         |    1 
 Rvcg-0.11/Rvcg/R/vcgKDtree.r                                                                        |   11 
 Rvcg-0.11/Rvcg/inst/NEWS.Rd                                                                         |   18 
 Rvcg-0.11/Rvcg/man/Rvcg-package.Rd                                                                  |    7 
 Rvcg-0.11/Rvcg/man/dummyhead.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/humface.Rd                                                                       |    3 
 Rvcg-0.11/Rvcg/man/meshintegrity.Rd                                                                 |    3 
 Rvcg-0.11/Rvcg/man/setRays.Rd                                                                       |    3 
 Rvcg-0.11/Rvcg/man/vcgBary.Rd                                                                       |    3 
 Rvcg-0.11/Rvcg/man/vcgBorder.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/vcgClean.Rd                                                                      |    3 
 Rvcg-0.11/Rvcg/man/vcgClost.Rd                                                                      |    4 
 Rvcg-0.11/Rvcg/man/vcgClostKD.Rd                                                                    |    3 
 Rvcg-0.11/Rvcg/man/vcgCurve.Rd                                                                      |    3 
 Rvcg-0.11/Rvcg/man/vcgGetEdge.Rd                                                                    |    3 
 Rvcg-0.11/Rvcg/man/vcgImport.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/vcgIsolated.Rd                                                                   |    3 
 Rvcg-0.11/Rvcg/man/vcgIsosurface.Rd                                                                 |    3 
 Rvcg-0.11/Rvcg/man/vcgKDtree.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/vcgMeshres.Rd                                                                    |    3 
 Rvcg-0.11/Rvcg/man/vcgNonBorderEdge.Rd                                                              |    3 
 Rvcg-0.11/Rvcg/man/vcgPlyRead.Rd                                                                    |    3 
 Rvcg-0.11/Rvcg/man/vcgPlyWrite.Rd                                                                   |    3 
 Rvcg-0.11/Rvcg/man/vcgQEdecim.Rd                                                                    |    3 
 Rvcg-0.11/Rvcg/man/vcgRaySearch.Rd                                                                  |    3 
 Rvcg-0.11/Rvcg/man/vcgSample.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/vcgSmooth.Rd                                                                     |    3 
 Rvcg-0.11/Rvcg/man/vcgStlWrite.Rd                                                                   |    3 
 Rvcg-0.11/Rvcg/man/vcgUniformRemesh.Rd                                                              |    3 
 Rvcg-0.11/Rvcg/man/vcgUpdateNormals.Rd                                                              |    3 
 Rvcg-0.11/Rvcg/man/vcgVFadj.Rd                                                                      |    3 
 Rvcg-0.11/Rvcg/src/Rclean.cpp                                                                       |    8 
 Rvcg-0.11/Rvcg/src/Rkdtree.cpp                                                                      |   37 
 Rvcg-0.11/Rvcg/src/Runiform_resample.cpp                                                            |    2 
 Rvcg-0.11/Rvcg/src/RvcgKD.h                                                                         |   11 
 Rvcg-0.11/Rvcg/src/Volume.h                                                                         |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/autoalign_4pcs.h                                   |   33 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/clean.h                                            | 2039 ++---
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/closest.h                                          |   64 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/clustering.h                                       |   34 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/advancing_front.h                           |   47 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/ball_pivoting.h                             |  286 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/marching_cubes.h                            |   10 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/mc_trivial_walker.h                         |  101 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/platonic.h                                  |  221 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/create/resampler.h                                 | 1127 +--
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/geodesic.h                                         |   20 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/harmonic.h                                         |  490 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/hole.h                                             |    8 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/implicit_smooth.h                                  |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/inside.h                                           |   43 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/local_optimization/tri_edge_collapse_quadric.h     |  384 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/local_optimization/tri_edge_collapse_quadric_tex.h |   10 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/local_optimization/tri_edge_flip.h                 |  968 +-
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/mesh_assert.h                                      |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/mesh_to_matrix.h                                   |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/distortion.h                       |  463 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/poisson_solver.h                   |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/tangent_field_operators.h          | 1515 ++--
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/point_sampling.h                                   |  265 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/pointcloud_normal.h                                |   49 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/polygon_polychord_collapse.h                       |  889 +-
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/polygon_support.h                                  |   80 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/quadrangulator.h                                   |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/refine.h                                           |    1 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/refine_loop.h                                      |  942 +-
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/smooth.h                                           |  147 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/stat.h                                             |    6 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/symmetry.h                                         |   49 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/color.h                                     |  115 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/curvature.h                                 |   36 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/curvature_fitting.h                         |  464 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/flag.h                                      |   80 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/normal.h                                    |   41 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/quality.h                                   |   20 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/update/selection.h                                 |    3 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/voronoi_processing.h                               |  113 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/algorithms/voronoi_volume_sampling.h                          |  244 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/allocate.h                                                    | 2475 +++---
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/append.h                                                      |   66 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/base.h                                                        |   82 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/complex.h                                                     |    1 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/exception.h                                                   |   17 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/complex/used_types.h                                                  |    1 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/container/simple_temporary_data.h                                     |   20 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/camera.h                                                         |   19 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/gen_normal.h                                                     |  103 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/matrix33.h                                                       |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/matrix44.h                                                       |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/quadric5.h                                                       | 1059 +-
 Rvcg-0.11/Rvcg/src/vcglib/vcg/math/shot.h                                                           |  130 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/edge/component.h                                              |  154 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/edge/pos.h                                                    |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/base.h                                                   |  306 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/component.h                                              |   50 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/component_ocf.h                                          |   83 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/component_polygon.h                                      |  123 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/pos.h                                                    |  677 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/face/topology.h                                               |    4 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/tetrahedron/pos.h                                             |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/vertex/component.h                                            |  151 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/simplex/vertex/component_ocf.h                                        |  350 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/box2.h                                                          |    6 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/color4.h                                                        |  147 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/colorspace.h                                                    | 3664 +++++-----
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/deprecated_point3.h                                             |    7 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/base2d.h                                                  |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/closest2d.h                                               |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/grid_closest2d.h                                          |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/grid_static_ptr2d.h                                       |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/grid_util.h                                               |   20 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/grid_util2d.h                                             |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/kdtree/kdtree.h                                           |  623 +
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/kdtree/kdtree.h.rej                                       |  111 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/kdtree/priorityqueue.h                                    |  188 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/kdtree/priorityqueue.h.rej                                |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/octree.h                                                  |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/perfect_spatial_hashing.h                                 | 3062 ++++----
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/space_iterators.h                                         |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/space_iterators2d.h                                       |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/spatial_hashing.h                                         |  538 -
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/index/spatial_hashing2d.h                                       |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/intersection2.h                                                 |   52 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/intersection3.h                                                 |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/polygon3.h                                                      |only
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/ray2.h                                                          |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/rect_packer.h                                                   |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/segment2.h                                                      |   25 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/tetra3.h                                                        |    2 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/texcoord2.h                                                     |   75 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/triangle2.h                                                     |  183 
 Rvcg-0.11/Rvcg/src/vcglib/vcg/space/triangle3.h                                                     |  171 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gl/gl_field.h                                                        |   92 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gl/glu_tessellator_cap.h                                             |    7 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gl/math.h                                                            |   33 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gl/pick.h                                                            |  124 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gl/trimesh.h                                                         |  320 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/glw/program.h                                                        | 1062 +-
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/coordinateframe.cpp                                              |   46 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/coordinateframe.h                                                |    4 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/rubberband.cpp                                                   |    4 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/trackmode.cpp                                                    |  354 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/trackmode.h                                                      |    2 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/trackutils.h                                                     |  200 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/gui/view.h                                                           |   49 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/igl                                                                  |only
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_dxf.h                                              |    5 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_field.h                                            |   83 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_idtf.h                                             |    4 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_obj.h                                              |   19 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_off.h                                              |  272 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_ply.h                                              | 1214 +--
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_stl.h                                              |  156 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/export_u3d.h                                              |  423 -
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_asc.h                                              |    4 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_ctm.h                                              |    3 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_field.h                                            |    1 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_gts.h                                              |    2 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_nvm.h                                              |   89 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_obj.h                                              |   58 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_off.h                                              |   19 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_out.h                                              |  102 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_ply.h                                              | 1842 ++---
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/import_ptx.h                                              |  782 +-
 Rvcg-0.11/Rvcg/src/vcglib/wrap/io_trimesh/precision.h                                               |only
 Rvcg-0.11/Rvcg/src/vcglib/wrap/qt/gl_label.h                                                        |   14 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/system/qgetopt.cpp                                                   |   15 
 Rvcg-0.11/Rvcg/src/vcglib/wrap/system/qgetopt.h                                                     |    7 
 174 files changed, 17950 insertions(+), 16168 deletions(-)

More information about Rvcg at CRAN
Permanent link

Package drc updated to version 2.5-12 with previous version 2.5-11 dated 2015-04-13

Title: Analysis of Dose-Response Curves
Description: Analysis of dose-response data is made available through a suite of flexible and versatile model fitting and after-fitting functions.
Author: Christian Ritz , Jens C. Strebig
Maintainer: Christian Ritz

Diff between drc versions 2.5-11 dated 2015-04-13 and 2.5-12 dated 2015-04-14

 DESCRIPTION     |    8 -
 MD5             |    8 -
 R/plot.drc.R    |  271 ++++++++++++++++++++++++++++++--------------------------
 man/ED.drc.Rd   |    3 
 man/plot.drc.Rd |   34 +++----
 5 files changed, 175 insertions(+), 149 deletions(-)

More information about drc at CRAN
Permanent link

New package adegraphics with initial version 1.0-1
Package: adegraphics
Type: Package
Title: An S4 Lattice-Based Package for the Representation of Multivariate Data
Version: 1.0-1
Date: 2015-04-14
Author: Stéphane Dray and Aurélie Siberchicot , with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Maintainer: Aurélie Siberchicot
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Depends: R (>= 3.0.2)
License: GPL (>= 2)
Imports: ade4, grid, KernSmooth, lattice, methods, RColorBrewer, sp (>= 1.0-16)
Suggests: Guerry, maptools, pixmap, spdep, splancs
Collate: adeGsenv.R parameter.R utils.R utilstriangle.R genericMethod.R utilsclass.R panelfunctions.R ADEg.R ADEgS.R utilsADEgS.R ADEg.C1.R C1.barchart.R C1.curve.R C1.density.R C1.gauss.R C1.dotplot.R C1.hist.R C1.interval.R ADEg.S1.R S1.boxplot.R S1.class.R S1.distri.R S1.label.R S1.match.R ADEg.S2.R S2.arrow.R S2.class.R S2.corcircle.R S2.density.R S2.distri.R S2.image.R S2.label.R S2.logo.R S2.match.R S2.traject.R S2.value.R ADEg.T.R T.image.R T.value.R T.cont.R ADEg.Tr.R Tr.class.R Tr.label.R Tr.match.R Tr.traject.R ade4-kplot.R ade4-scatter.R ade4-plot.R s.hist.R multiplot.R s.Spatial.R utilskey.R
URL: http://pbil.univ-lyon1.fr/ADE-4, Mailing list: http://listes.univ-lyon1.fr/wws/info/adelist
Encoding: UTF-8
Repository: CRAN
Repository/R-Forge/Project: ade4
Repository/R-Forge/Revision: 798
Repository/R-Forge/DateTimeStamp: 2015-04-14 07:33:51
Date/Publication: 2015-04-14 13:47:29
Packaged: 2015-04-14 07:46:17 UTC; rforge
NeedsCompilation: no

More information about adegraphics at CRAN
Permanent link

Package ade4 updated to version 1.7-2 with previous version 1.6-2 dated 2013-11-20

Title: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
Description: Multivariate data analysis and graphical display.
Author: Stéphane Dray , Anne-Béatrice Dufour , and Jean Thioulouse , with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Maintainer: Aurélie Siberchicot

Diff between ade4 versions 1.6-2 dated 2013-11-20 and 1.7-2 dated 2015-04-14

 ChangeLog                  |  353 ++++++++++++++++++++
 DESCRIPTION                |   21 -
 MD5                        |  781 +++++++++++++++++++++++----------------------
 NAMESPACE                  |   56 ++-
 R/add.scatter.R            |    2 
 R/between.R                |   26 +
 R/betwitdpcoa.R            |only
 R/coinertia.R              |    4 
 R/combine.4thcorner.R      |    1 
 R/costatis.R               |   33 +
 R/dist.dudi.R              |    4 
 R/dpcoa.R                  |  284 +++++++---------
 R/dudi.R                   |   27 +
 R/foucart.R                |    4 
 R/fourthcorner.R           |    4 
 R/fourthcorner.rlq.R       |   16 
 R/kplot.foucart.R          |    4 
 R/kplot.mcoa.R             |    8 
 R/kplot.mfa.R              |    4 
 R/kplot.pta.R              |   16 
 R/kplot.sepan.R            |   10 
 R/kplot.statis.R           |    4 
 R/krandboot.R              |only
 R/krandxval.R              |only
 R/ktab.R                   |   93 +++--
 R/ktab.data.frame.R        |    5 
 R/ktab.list.df.R           |    4 
 R/ktab.list.dudi.R         |    7 
 R/ktab.match2ktabs.R       |    4 
 R/ktab.within.R            |    6 
 R/mbpcaiv.R                |only
 R/mbpls.R                  |only
 R/mcoa.R                   |   29 -
 R/mdpcoa.R                 |   10 
 R/mfa.R                    |    4 
 R/multiblock.R             |only
 R/multispati.R             |    4 
 R/orthobasis.R             |  104 ++---
 R/plot.4thcorner.R         |   36 +-
 R/print.4thcorner.R        |    2 
 R/procuste.R               |  142 ++++----
 R/pta.R                    |   27 -
 R/randboot.R               |only
 R/randtest.between.R       |   21 -
 R/randtest.rlq.R           |    2 
 R/randxval.R               |only
 R/rlq.R                    |   47 +-
 R/s.image.R                |   36 +-
 R/s.kde2d.R                |    1 
 R/s.logo.R                 |    1 
 R/scatterutil.R            |    2 
 R/sepan.R                  |    1 
 R/statico.R                |   43 ++
 R/statis.R                 |    4 
 R/testdim.R                |   16 
 R/utilities.R              |    5 
 R/within.R                 |   18 +
 data/abouheif.eg.rda       |binary
 data/acacia.rda            |binary
 data/aminoacyl.rda         |binary
 data/apis108.rda           |binary
 data/aravo.rda             |binary
 data/ardeche.rda           |binary
 data/arrival.rda           |binary
 data/atlas.rda             |binary
 data/atya.rda              |binary
 data/avijons.rda           |binary
 data/avimedi.rda           |binary
 data/aviurba.rda           |binary
 data/bacteria.rda          |binary
 data/banque.rda            |binary
 data/baran95.rda           |binary
 data/bf88.rda              |binary
 data/bordeaux.rda          |binary
 data/bsetal97.rda          |binary
 data/buech.rda             |binary
 data/butterfly.rda         |binary
 data/capitales.rda         |binary
 data/carni19.rda           |binary
 data/carni70.rda           |binary
 data/carniherbi49.rda      |binary
 data/casitas.rda           |binary
 data/chatcat.rda           |binary
 data/chats.rda             |binary
 data/chazeb.rda            |binary
 data/chevaine.rda          |binary
 data/chickenk.rda          |only
 data/clementines.rda       |binary
 data/cnc2003.rda           |binary
 data/coleo.rda             |binary
 data/corvus.rda            |binary
 data/datalist              |    2 
 data/deug.rda              |binary
 data/doubs.rda             |binary
 data/dunedata.rda          |binary
 data/ecg.rda               |binary
 data/ecomor.rda            |binary
 data/elec88.rda            |binary
 data/escopage.rda          |binary
 data/euro123.rda           |binary
 data/fission.rda           |binary
 data/friday87.rda          |binary
 data/fruits.rda            |binary
 data/ggtortoises.rda       |binary
 data/granulo.rda           |binary
 data/hdpg.rda              |binary
 data/housetasks.rda        |binary
 data/humDNAm.rda           |binary
 data/ichtyo.rda            |binary
 data/irishdata.rda         |binary
 data/julliot.rda           |binary
 data/jv73.rda              |binary
 data/kcponds.rda           |binary
 data/lascaux.rda           |binary
 data/lizards.rda           |binary
 data/macaca.rda            |binary
 data/macon.rda             |binary
 data/macroloire.rda        |binary
 data/mafragh.rda           |binary
 data/maples.rda            |binary
 data/mariages.rda          |binary
 data/meau.rda              |binary
 data/meaudret.rda          |binary
 data/microsatt.rda         |binary
 data/mjrochet.rda          |binary
 data/mollusc.rda           |binary
 data/monde84.rda           |binary
 data/morphosport.rda       |binary
 data/newick.eg.rda         |binary
 data/njplot.rda            |binary
 data/olympic.rda           |binary
 data/oribatid.rda          |binary
 data/ours.rda              |binary
 data/palm.rda              |binary
 data/pap.rda               |binary
 data/pcw.rda               |only
 data/perthi02.rda          |binary
 data/piosphere.rda         |binary
 data/presid2002.rda        |binary
 data/procella.rda          |binary
 data/rankrock.rda          |binary
 data/rhizobium.rda         |binary
 data/rhone.rda             |binary
 data/rpjdl.rda             |binary
 data/santacatalina.rda     |binary
 data/sarcelles.rda         |binary
 data/seconde.rda           |binary
 data/skulls.rda            |binary
 data/steppe.rda            |binary
 data/syndicats.rda         |binary
 data/t3012.rda             |binary
 data/tarentaise.rda        |binary
 data/taxo.eg.rda           |binary
 data/tintoodiel.rda        |binary
 data/tithonia.rda          |binary
 data/tortues.rda           |binary
 data/toxicity.rda          |binary
 data/trichometeo.rda       |binary
 data/ungulates.rda         |binary
 data/vegtf.rda             |binary
 data/veuvage.rda           |binary
 data/westafrica.rda        |binary
 data/woangers.rda          |binary
 data/worksurv.rda          |binary
 data/yanomama.rda          |binary
 data/zealand.rda           |binary
 man/EH.Rd                  |    2 
 man/PI2newick.Rd           |    2 
 man/abouheif.eg.Rd         |    2 
 man/acacia.Rd              |   19 -
 man/add.scatter.Rd         |  103 +++--
 man/ade4.package.Rd        |    2 
 man/adegraphicsLoaded.Rd   |only
 man/aminoacyl.Rd           |    2 
 man/amova.Rd               |    2 
 man/aravo.Rd               |   25 -
 man/ardeche.Rd             |    6 
 man/area.plot.Rd           |  172 +++++----
 man/as.taxo.Rd             |    2 
 man/atlas.Rd               |   89 +++--
 man/atya.Rd                |   26 -
 man/avijons.Rd             |  104 +++--
 man/avimedi.Rd             |   40 +-
 man/bacteria.Rd            |   11 
 man/banque.Rd              |    8 
 man/baran95.Rd             |   64 ++-
 man/between.Rd             |   30 +
 man/betweencoinertia.Rd    |    4 
 man/bf88.Rd                |   31 +
 man/bsetal97.Rd            |    2 
 man/buech.Rd               |   25 -
 man/butterfly.Rd           |   29 +
 man/bwca.dpcoa.Rd          |only
 man/cailliez.Rd            |    2 
 man/capitales.Rd           |   57 ++-
 man/carni70.Rd             |    9 
 man/cca.Rd                 |   99 +++--
 man/chats.Rd               |   40 +-
 man/chazeb.Rd              |    3 
 man/chevaine.Rd            |   67 +--
 man/chickenk.Rd            |only
 man/clementines.Rd         |   41 +-
 man/cnc2003.Rd             |    1 
 man/coinertia.Rd           |   21 -
 man/coleo.Rd               |   27 +
 man/corkdist.Rd            |   26 -
 man/corvus.Rd              |   14 
 man/costatis.Rd            |    9 
 man/costatis.randtest.Rd   |only
 man/deug.Rd                |   15 
 man/disc.Rd                |    2 
 man/discrimin.Rd           |    5 
 man/discrimin.coa.Rd       |    2 
 man/dist.binary.Rd         |    2 
 man/dist.dudi.Rd           |    2 
 man/dist.genet.Rd          |    2 
 man/dist.neig.Rd           |    2 
 man/dist.prop.Rd           |   24 -
 man/dist.quant.Rd          |   24 -
 man/divc.Rd                |    2 
 man/divcmax.Rd             |   24 -
 man/dotchart.phylog.Rd     |    2 
 man/doubs.Rd               |   50 +-
 man/dpcoa.Rd               |   58 ++-
 man/dudi.Rd                |    5 
 man/dudi.acm.Rd            |   26 +
 man/dudi.coa.Rd            |   16 
 man/dudi.dec.Rd            |    2 
 man/dudi.fca.Rd            |   11 
 man/dudi.hillsmith.Rd      |   18 -
 man/dudi.mix.Rd            |   16 
 man/dudi.nsc.Rd            |   12 
 man/dudi.pca.Rd            |   51 +-
 man/dudi.pco.Rd            |    2 
 man/ecg.Rd                 |    2 
 man/ecomor.Rd              |   36 +-
 man/elec88.Rd              |   44 +-
 man/euro123.Rd             |   29 +
 man/foucart.Rd             |   12 
 man/friday87.Rd            |    7 
 man/fruits.Rd              |   31 +
 man/gearymoran.Rd          |   19 -
 man/ggtortoises.Rd         |   35 +-
 man/granulo.Rd             |   16 
 man/gridrowcol.Rd          |   37 +-
 man/hdpg.Rd                |   24 -
 man/housetasks.Rd          |   11 
 man/humDNAm.Rd             |    4 
 man/inertia.dudi.Rd        |    2 
 man/irishdata.Rd           |   45 ++
 man/is.euclid.Rd           |    2 
 man/julliot.Rd             |   94 +++--
 man/jv73.Rd                |   33 +
 man/kcponds.Rd             |   50 +-
 man/kdist.Rd               |    2 
 man/kdist2ktab.Rd          |   15 
 man/kdisteuclid.Rd         |   39 +-
 man/kplot.foucart.Rd       |    8 
 man/kplot.mcoa.Rd          |   12 
 man/kplot.mfa.Rd           |    3 
 man/kplot.pta.Rd           |   11 
 man/kplot.sepan.Rd         |   38 +-
 man/kplot.statis.Rd        |   14 
 man/krandtest.Rd           |    2 
 man/ktab.Rd                |   18 -
 man/ktab.data.frame.Rd     |    2 
 man/ktab.list.df.Rd        |    4 
 man/ktab.list.dudi.Rd      |   18 -
 man/ktab.within.Rd         |    2 
 man/lascaux.Rd             |   38 +-
 man/lingoes.Rd             |    2 
 man/lizards.Rd             |    2 
 man/macaca.Rd              |   22 -
 man/macroloire.Rd          |    4 
 man/mafragh.Rd             |   86 +++-
 man/mantel.randtest.Rd     |    2 
 man/mantel.rtest.Rd        |    2 
 man/maples.Rd              |    5 
 man/mariages.Rd            |   22 -
 man/mbpcaiv.Rd             |only
 man/mbpls.Rd               |only
 man/mcoa.Rd                |    2 
 man/mdpcoa.Rd              |  316 +++++++++---------
 man/meau.Rd                |   25 +
 man/meaudret.Rd            |   25 +
 man/mfa.Rd                 |    2 
 man/microsatt.Rd           |   12 
 man/mjrochet.Rd            |   22 -
 man/mld.Rd                 |    2 
 man/mollusc.Rd             |   26 +
 man/mstree.Rd              |   42 +-
 man/multiblock.Rd          |only
 man/multispati.Rd          |   71 ++--
 man/multispati.randtest.Rd |    4 
 man/multispati.rtest.Rd    |    4 
 man/neig.Rd                |   91 ++---
 man/newick.eg.Rd           |    4 
 man/newick2phylog.Rd       |   10 
 man/niche.Rd               |   41 +-
 man/nipals.Rd              |   34 +
 man/njplot.Rd              |    2 
 man/olympic.Rd             |   31 +
 man/optimEH.Rd             |    2 
 man/oribatid.Rd            |   17 
 man/originality.Rd         |    2 
 man/orisaved.Rd            |    2 
 man/orthobasis.Rd          |  119 ++++--
 man/orthogram.Rd           |    4 
 man/ours.Rd                |    6 
 man/palm.Rd                |    3 
 man/pap.Rd                 |    3 
 man/pcaiv.Rd               |    2 
 man/pcaivortho.Rd          |   43 +-
 man/pcw.Rd                 |only
 man/phylog.Rd              |   16 
 man/plot.between.Rd        |   37 +-
 man/plot.phylog.Rd         |    2 
 man/plot.within.Rd         |   34 +
 man/presid2002.Rd          |   64 ++-
 man/procella.Rd            |    2 
 man/procuste.Rd            |   78 ++--
 man/procuste.randtest.Rd   |    2 
 man/procuste.rtest.Rd      |    2 
 man/pta.Rd                 |    7 
 man/quasieuclid.Rd         |    2 
 man/randEH.Rd              |    2 
 man/randboot.Rd            |only
 man/randboot.multiblock.Rd |only
 man/randtest.amova.Rd      |    2 
 man/randtest.between.Rd    |    2 
 man/randtest.coinertia.Rd  |    2 
 man/randtest.discrimin.Rd  |    2 
 man/randtest.pcaiv.Rd      |    2 
 man/randxval.Rd            |only
 man/rankrock.Rd            |    7 
 man/reconst.Rd             |    2 
 man/rhizobium.Rd           |  156 ++++----
 man/rlq.Rd                 |    2 
 man/rpjdl.Rd               |   14 
 man/rtest.Rd               |    7 
 man/s.chull.Rd             |   11 
 man/s.class.Rd             |   58 +--
 man/s.corcircle.Rd         |   20 -
 man/s.distri.Rd            |   47 +-
 man/s.image.Rd             |   62 +--
 man/s.kde2d.Rd             |   17 
 man/s.label.Rd             |   43 +-
 man/s.logo.Rd              |   42 +-
 man/s.match.Rd             |   24 -
 man/s.match.class.Rd       |   37 +-
 man/s.traject.Rd           |   19 -
 man/s.value.Rd             |   42 +-
 man/santacatalina.Rd       |   22 -
 man/sarcelles.Rd           |   22 -
 man/scatter.acm.Rd         |    8 
 man/scatter.coa.Rd         |   29 +
 man/scatter.dudi.Rd        |    8 
 man/scatter.fca.Rd         |    9 
 man/scatterutil.Rd         |    3 
 man/sco.class.Rd           |    2 
 man/sco.distri.Rd          |   66 +--
 man/sco.gauss.Rd           |    2 
 man/sco.label.Rd           |    2 
 man/sco.match.Rd           |    2 
 man/score.Rd               |    6 
 man/score.acm.Rd           |    4 
 man/score.coa.Rd           |    6 
 man/score.pca.Rd           |    2 
 man/seconde.Rd             |    6 
 man/skulls.Rd              |    3 
 man/statico.Rd             |    4 
 man/statico.krandtest.Rd   |only
 man/statis.Rd              |   11 
 man/supcol.Rd              |   20 -
 man/suprow.Rd              |   47 +-
 man/symbols.phylog.Rd      |    2 
 man/t3012.Rd               |   16 
 man/table.paint.Rd         |    1 
 man/table.phylog.Rd        |    2 
 man/table.value.Rd         |   21 -
 man/tarentaise.Rd          |    2 
 man/testdim.Rd             |   14 
 man/testdim.multiblock.Rd  |only
 man/tintoodiel.Rd          |   40 +-
 man/tortues.Rd             |   18 -
 man/toxicity.Rd            |   15 
 man/triangle.class.Rd      |   30 -
 man/triangle.plot.Rd       |   28 -
 man/trichometeo.Rd         |   18 -
 man/variance.phylog.Rd     |    2 
 man/vegtf.Rd               |   36 +-
 man/wca.rlq.Rd             |    5 
 man/westafrica.Rd          |  112 +++---
 man/within.Rd              |   27 +
 man/withincoinertia.Rd     |    6 
 man/withinpca.Rd           |    8 
 man/witwit.coa.Rd          |   16 
 man/worksurv.Rd            |   16 
 man/zealand.Rd             |   42 +-
 src/adesub.c               |   14 
 src/adesub.h               |    1 
 src/fourthcorner.c         |    2 
 src/tests.c                |    4 
 403 files changed, 4569 insertions(+), 2887 deletions(-)

More information about ade4 at CRAN
Permanent link

Package hypred (with last version 0.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-12-21 0.5
2013-11-20 0.4
2012-08-01 0.2
2011-02-03 0.1

Permanent link
Package TSdist updated to version 2.2 with previous version 2.1 dated 2015-03-31

Title: Distance Measures for Time Series Data
Description: A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori

Diff between TSdist versions 2.1 dated 2015-03-31 and 2.2 dated 2015-04-14

 DESCRIPTION             |    8 ++++----
 MD5                     |    6 +++---
 man/TSdist-package.Rd   |    5 ++---
 man/lb.keoghDistance.Rd |    2 +-
 4 files changed, 10 insertions(+), 11 deletions(-)

More information about TSdist at CRAN
Permanent link

Package RcppParallel updated to version 4.3.8 with previous version 4.3.6 dated 2015-03-10

Title: Parallel Programming Tools for Rcpp
Description: High level functions for doing parallel programming with Rcpp. For example, the parallelFor() function can be used to convert the work of a standard serial "for" loop into a parallel one and the parallelReduce() function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut, cre], Romain Francois [aut, cph], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/), RStudio [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]
Maintainer: JJ Allaire

Diff between RcppParallel versions 4.3.6 dated 2015-03-10 and 4.3.8 dated 2015-04-14

 RcppParallel-4.3.6/RcppParallel/README.md                         |only
 RcppParallel-4.3.8/RcppParallel/DESCRIPTION                       |   12 +--
 RcppParallel-4.3.8/RcppParallel/MD5                               |   34 +++++---
 RcppParallel-4.3.8/RcppParallel/NEWS                              |   11 +-
 RcppParallel-4.3.8/RcppParallel/R/build.R                         |   24 +++---
 RcppParallel-4.3.8/RcppParallel/R/hooks.R                         |   15 +++
 RcppParallel-4.3.8/RcppParallel/inst/include/RcppParallel.h       |    2 
 RcppParallel-4.3.8/RcppParallel/inst/include/RcppParallel/TBB.h   |    1 
 RcppParallel-4.3.8/RcppParallel/inst/include/tthread/tinythread.h |    1 
 RcppParallel-4.3.8/RcppParallel/man/RcppParallel-package.Rd       |    4 -
 RcppParallel-4.3.8/RcppParallel/src/Makevars                      |   39 ++++++----
 RcppParallel-4.3.8/RcppParallel/src/tbb/build/SunOS.suncc.inc     |    2 
 RcppParallel-4.3.8/RcppParallel/src/tbb/build/linux.clang.inc     |    2 
 RcppParallel-4.3.8/RcppParallel/tests/testthat/cpp/malloc.cpp     |only
 RcppParallel-4.3.8/RcppParallel/tests/testthat/pkg                |only
 RcppParallel-4.3.8/RcppParallel/tests/testthat/test-malloc.R      |only
 RcppParallel-4.3.8/RcppParallel/tests/testthat/test-pkg.R         |only
 17 files changed, 93 insertions(+), 54 deletions(-)

More information about RcppParallel at CRAN
Permanent link

New package PGRdup with initial version 0.2
Package: PGRdup
Title: Discover Probable Duplicates in Plant Genetic Resources (PGR) Collections
Version: 0.2
Authors@R: c( person(c("J.", "Aravind"), email = "aravindj@nbpgr.ernet.in", role = c("aut", "cre")), person(c("J.", "Radhamani"), email = "radhamani@nbpgr.ernet.in", role = "aut"), person(c("Kalyani", "Srinivasan"), email = "kalyani@nbpgr.ernet.in", role = "aut"), person(c("B.", "Ananda", "Subhash"), email = "anandasubhash@gmail.com", role = "aut"), person(c("R.", "K.", "Tyagi"), email = "rktyagi@nbpgr.ernet.in", role = "aut"))
Description: Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Keyword in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.
Depends: R (>= 3.0.2)
Imports: data.table (>= 1.9.3), igraph, stringdist (>= 0.5), stringi
Copyright: 2014, ICAR-NBPGR
License: GPL-2 | GPL-3
LazyData: true
Packaged: 2015-04-14 07:02:17 UTC; sony
Author: J. Aravind [aut, cre], J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], R. K. Tyagi [aut]
Maintainer: J. Aravind
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-04-14 09:25:54

More information about PGRdup at CRAN
Permanent link

Package MissMech updated to version 1.0.2 with previous version 1.0.1 dated 2014-01-20

Title: Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
Description: To test whether the missing data mechanism, in a set of incompletely observed data, is one of missing completely at random (MCAR). For detailed description see Jamshidian, M. Jalal, S., and Jansen, C. (2014). "MissMech: An R Package for Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random (MCAR)," Journal of Statistical Software, 56(6), 1-31. URL http://www.jstatsoft.org/v56/i06/.
Author: Mortaza Jamshidian, Siavash Jalal, and Camden Jansen
Maintainer: Mortaza Jamshidian

Diff between MissMech versions 1.0.1 dated 2014-01-20 and 1.0.2 dated 2015-04-14

 MissMech-1.0.1/MissMech/R/AndersonDarling.r      |only
 MissMech-1.0.2/MissMech/DESCRIPTION              |   13 +++++++------
 MissMech-1.0.2/MissMech/MD5                      |   10 +++++-----
 MissMech-1.0.2/MissMech/NAMESPACE                |    7 +++++++
 MissMech-1.0.2/MissMech/R/AndersonDarling.R      |only
 MissMech-1.0.2/MissMech/man/MissMech-package.Rd  |    4 ++--
 MissMech-1.0.2/MissMech/man/TestMCARNormality.Rd |    8 ++++----
 7 files changed, 25 insertions(+), 17 deletions(-)

More information about MissMech at CRAN
Permanent link

Package lucid updated to version 1.2 with previous version 1.1 dated 2015-02-10

Title: Lucid Printing of Floating Point Numbers
Description: Print vectors (and data frames) of floating point numbers using a non-scientific format optimized for human readers. Vectors of numbers are rounded using significant digits, aligned at the decimal point, and all zeros trailing the decimal point are dropped.
Author: Kevin Wright
Maintainer: Kevin Wright

Diff between lucid versions 1.1 dated 2015-02-10 and 1.2 dated 2015-04-14

 DESCRIPTION                              |   10 +--
 MD5                                      |   26 +++++-----
 NAMESPACE                                |    2 
 NEWS                                     |    4 +
 R/lucid.r                                |   13 +++--
 R/vc.r                                   |   35 ++++++++++++-
 inst/doc/lucid_printing.R                |   31 ++++++++++++
 inst/doc/lucid_printing.Rnw              |   78 +++++++++++++++++++------------
 inst/doc/lucid_printing.pdf              |binary
 man/vc.Rd                                |   16 ++++--
 vignettes/figure/unnamed-chunk-5-1.pdf   |binary
 vignettes/lucid.bib                      |    7 ++
 vignettes/lucid_printing-concordance.tex |    4 -
 vignettes/lucid_printing.Rnw             |   78 +++++++++++++++++++------------
 14 files changed, 215 insertions(+), 89 deletions(-)

More information about lucid at CRAN
Permanent link

Package gamlr updated to version 1.13-1 with previous version 1.13 dated 2015-04-01

Title: Gamma Lasso Regression
Description: The gamma lasso algorithm provides regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage for this package is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms). For details see: Taddy (2015), One-Step Estimator Paths for Concave Regularization, http://arxiv.org/abs/1308.5623.
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between gamlr versions 1.13 dated 2015-04-01 and 1.13-1 dated 2015-04-14

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 src/gamlr.c |    4 ----
 3 files changed, 5 insertions(+), 9 deletions(-)

More information about gamlr at CRAN
Permanent link

Package EGRET updated to version 2.2.0 with previous version 2.1.1 dated 2015-02-17

Title: Exploration and Graphics for RivEr Trends (EGRET)
Description: Statistics and graphics for streamflow history, water quality trends, and the statistical modeling algorithm: Weighted Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco

Diff between EGRET versions 2.1.1 dated 2015-02-17 and 2.2.0 dated 2015-04-14

 EGRET-2.1.1/EGRET/vignettes/EGRET-concordance.tex |only
 EGRET-2.1.1/EGRET/vignettes/figure                |only
 EGRET-2.1.1/EGRET/vignettes/framed.sty            |only
 EGRET-2.2.0/EGRET/DESCRIPTION                     |    8 
 EGRET-2.2.0/EGRET/MD5                             |  120 +--------
 EGRET-2.2.0/EGRET/NEWS                            |   11 
 EGRET-2.2.0/EGRET/R/EGRET.R                       |    2 
 EGRET-2.2.0/EGRET/R/fluxUnit.R                    |    3 
 EGRET-2.2.0/EGRET/R/modelEstimation.R             |   11 
 EGRET-2.2.0/EGRET/R/objectDefinitions.R           |  281 +++++++++++-----------
 EGRET-2.2.0/EGRET/R/plotFlowSingle.R              |    9 
 EGRET-2.2.0/EGRET/R/sysdata.rda                   |binary
 EGRET-2.2.0/EGRET/README.md                       |    2 
 EGRET-2.2.0/EGRET/build/vignette.rds              |binary
 EGRET-2.2.0/EGRET/inst/CITATION                   |only
 EGRET-2.2.0/EGRET/inst/doc/EGRET.Rnw              |    4 
 EGRET-2.2.0/EGRET/inst/doc/EGRET.pdf              |binary
 EGRET-2.2.0/EGRET/man/EGRET-package.Rd            |    2 
 EGRET-2.2.0/EGRET/man/fluxUnit-class.Rd           |    2 
 EGRET-2.2.0/EGRET/man/modelEstimation.Rd          |    6 
 EGRET-2.2.0/EGRET/man/plotFlowSingle.Rd           |    9 
 EGRET-2.2.0/EGRET/vignettes/EGRET.Rnw             |    4 
 22 files changed, 222 insertions(+), 252 deletions(-)

More information about EGRET at CRAN
Permanent link

Package dummy updated to version 0.1.2 with previous version 0.1.0 dated 2014-11-07

Title: Automatic Creation of Dummies with Support for Predictive Modeling
Description: Efficiently create dummies of all factors and character vectors in a data frame. Support is included for learning the categories on one data set (e.g., a training set) and deploying them on another (e.g., a test set).
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings

Diff between dummy versions 0.1.0 dated 2014-11-07 and 0.1.2 dated 2015-04-14

 DESCRIPTION      |    6 +++---
 MD5              |   10 +++++++---
 R/categories.R   |    4 +++-
 R/dummy.R        |    1 +
 R/dummyNews.R    |only
 R/zzz.R          |only
 inst             |only
 man/dummyNews.Rd |only
 8 files changed, 14 insertions(+), 7 deletions(-)

More information about dummy at CRAN
Permanent link

Package domino updated to version 0.2-5 with previous version 0.2-1 dated 2014-09-09

Title: R Console Bindings for the 'Domino Command-Line Client'
Description: A wrapper on top of the 'Domino Command-Line Client'. It lets you run 'Domino' commands (e.g., "run", "upload", "download") directly from your R environment. Under the hood, it uses R's system function to run the 'Domino' executable, which must be installed as a prerequisite.
Author: Jacek Glodek
Maintainer: Nick Elprin

Diff between domino versions 0.2-1 dated 2014-09-09 and 0.2-5 dated 2015-04-14

 DESCRIPTION           |   12 +++----
 MD5                   |    9 +++--
 R/domino.R            |   78 +++++++++++++++++++++++++++++++++++++++++++++-----
 man/domino-package.Rd |    8 ++---
 man/domino.login.Rd   |   13 ++++++--
 man/domino.sync.Rd    |only
 6 files changed, 96 insertions(+), 24 deletions(-)

More information about domino at CRAN
Permanent link

Package descr updated to version 1.1 with previous version 1.0.4 dated 2014-11-04

Title: Descriptive Statistics
Description: Weighted frequency and contingency tables of categorical variables and of the comparison of the mean value of a numerical variable by the levels of a factor, and methods to produce xtable objects of the tables and to plot them. There are also functions to facilitate the character encoding conversion of objects, to quickly convert fixed width files into csv ones, and to export a data.frame to a text file with the necessary R and SPSS codes to reread the data.
Author: Jakson Aquino. Includes R source code and/or documentation written by Dirk Enzmann, Marc Schwartz, Nitin Jain, and Stefan Kraft
Maintainer: Jakson Aquino

Diff between descr versions 1.0.4 dated 2014-11-04 and 1.1 dated 2015-04-14

 DESCRIPTION                          |   20 ++--
 MD5                                  |   24 ++---
 NEWS                                 |   14 +++
 R/CrossTable.R                       |   49 +++++------
 R/crosstab.R                         |   75 +++++++++--------
 inst/po/pt_BR/LC_MESSAGES/R-descr.mo |binary
 inst/po/pt_BR/LC_MESSAGES/descr.mo   |binary
 man/crosstab.Rd                      |   21 ++--
 man/plot.CrossTable.Rd               |    2 
 po/R-descr.pot                       |  142 ++++++++++++++++-----------------
 po/R-pt_BR.po                        |  150 +++++++++++++++++------------------
 po/descr.pot                         |   16 +--
 po/pt_BR.po                          |   22 ++---
 13 files changed, 281 insertions(+), 254 deletions(-)

More information about descr at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.