Title: Ensure Values at Runtime
Diff between ensurer versions 1.0 dated 2014-11-18 and 1.1 dated 2015-04-21
Description: Add simple runtime contracts to R values. These ensure that values
fulfil certain conditions and will raise appropriate errors if they do not.
Author: Stefan Milton Bache
Maintainer: Stefan Milton Bache
DESCRIPTION | 14 ++--
LICENSE | 4 -
MD5 | 38 ++++++------
NAMESPACE | 4 +
NEWS |only
R/check_that.R |only
R/ensure_that.R | 20 ++++--
R/ensurer.R | 54 +++++++++---------
R/ensurer_env.R | 18 +++++-
R/ensures_that.R | 113 ++++++++++++++++++++++++++------------
R/utility_functions.R | 13 +++-
README.md | 63 ++++++++++++---------
build/vignette.rds |binary
inst/doc/ensurer.R | 18 +++---
inst/doc/ensurer.Rmd | 49 +++++++++-------
inst/doc/ensurer.html | 47 +++++++++------
man/ensurer.Rd | 57 +++++++++----------
man/ensures_that.Rd | 78 +++++++++++++++-----------
man/print.ensurer.Rd | 3 -
tests/testthat/test-ensure_that.r | 10 +++
vignettes/ensurer.Rmd | 37 +++++++-----
21 files changed, 387 insertions(+), 253 deletions(-)
Title: Efficient Effect Size Computation
Diff between effsize versions 0.5.2 dated 2014-08-28 and 0.5.4 dated 2015-04-21
Description: A collection of functions to compute the standardized
effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha-Delaney A).
The computation algorithms have been optimized to allow efficient computation even
with very large data sets.
Author: Marco Torchiano [aut, cre]
Maintainer: Marco Torchiano
DESCRIPTION | 23 +++++++++++++----------
MD5 | 18 +++++++++++-------
NAMESPACE | 7 +++++++
R/CliffDelta.R | 8 ++++----
R/CohenD.R | 14 +++++++++++++-
R/VD_A.R | 2 +-
man/cohen.d.Rd | 4 ++++
man/effsize-package.Rd | 17 +++++------------
tests |only
9 files changed, 58 insertions(+), 35 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions in
Causal Models
Diff between causaleffect versions 1.0 dated 2014-09-25 and 1.1 dated 2015-04-21
Description: An implementation of a conditional causal effect identification algorithm constructed by Ilya Shpitser and Judea Pearl (2006) for deriving expressions of joint interventional distributions in causal models, which contain unobserved variables and induce directed acyclic graphs.
Author: Santtu Tikka
Maintainer: Santtu Tikka
causaleffect-1.0/causaleffect/R/anRpackage-internal.R |only
causaleffect-1.1/causaleffect/DESCRIPTION | 12 +++---
causaleffect-1.1/causaleffect/MD5 | 16 ++++----
causaleffect-1.1/causaleffect/NAMESPACE | 2 -
causaleffect-1.1/causaleffect/R/causal.effect.R | 22 +++++++++---
causaleffect-1.1/causaleffect/R/getExpression.probability.R | 6 +--
causaleffect-1.1/causaleffect/R/id.R | 16 ++++----
causaleffect-1.1/causaleffect/R/idc.R |only
causaleffect-1.1/causaleffect/man/causal.effect.Rd | 20 +++++++---
causaleffect-1.1/causaleffect/man/causaleffect-package.Rd | 22 +++++++-----
10 files changed, 70 insertions(+), 46 deletions(-)
Title: Rcpp Integration for the Armadillo Templated Linear Algebra
Library
Diff between RcppArmadillo versions 0.4.650.1.1 dated 2015-02-26 and 0.5.000.0 dated 2015-04-21
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo. Armadillo is licensed under the MPL 2.0, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 21 +
DESCRIPTION | 8
MD5 | 132 +++----
build/vignette.rds |binary
inst/NEWS.Rd | 28 +
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/include/armadillo | 32 +
inst/include/armadillo_bits/Col_bones.hpp | 10
inst/include/armadillo_bits/Col_meat.hpp | 60 ++-
inst/include/armadillo_bits/Cube_meat.hpp | 20 -
inst/include/armadillo_bits/Mat_bones.hpp | 8
inst/include/armadillo_bits/Mat_meat.hpp | 144 +++++++
inst/include/armadillo_bits/Op_bones.hpp | 3
inst/include/armadillo_bits/Proxy.hpp | 48 ++
inst/include/armadillo_bits/Row_bones.hpp | 10
inst/include/armadillo_bits/Row_meat.hpp | 60 ++-
inst/include/armadillo_bits/SpCol_bones.hpp | 41 --
inst/include/armadillo_bits/SpCol_meat.hpp | 157 --------
inst/include/armadillo_bits/SpMat_bones.hpp | 10
inst/include/armadillo_bits/SpMat_meat.hpp | 78 +++-
inst/include/armadillo_bits/SpProxy.hpp | 2
inst/include/armadillo_bits/SpRow_bones.hpp | 40 --
inst/include/armadillo_bits/SpRow_meat.hpp | 180 ---------
inst/include/armadillo_bits/arma_cmath.hpp | 6
inst/include/armadillo_bits/arma_config.hpp | 11
inst/include/armadillo_bits/arma_ostream_meat.hpp | 24 +
inst/include/armadillo_bits/arma_version.hpp | 12
inst/include/armadillo_bits/atlas_wrapper.hpp | 56 +-
inst/include/armadillo_bits/auxlib_meat.hpp | 94 ++++-
inst/include/armadillo_bits/compiler_setup.hpp | 28 +
inst/include/armadillo_bits/config.hpp | 52 +-
inst/include/armadillo_bits/debug.hpp | 119 +++++-
inst/include/armadillo_bits/diagview_meat.hpp | 10
inst/include/armadillo_bits/diskio_meat.hpp | 194 +++++++++-
inst/include/armadillo_bits/field_meat.hpp | 10
inst/include/armadillo_bits/fn_accu.hpp | 78 +++-
inst/include/armadillo_bits/fn_all.hpp | 11
inst/include/armadillo_bits/fn_any.hpp | 11
inst/include/armadillo_bits/fn_eigs_gen.hpp | 2
inst/include/armadillo_bits/fn_elem.hpp | 14
inst/include/armadillo_bits/fn_join.hpp | 55 ++
inst/include/armadillo_bits/fn_n_unique.hpp | 2
inst/include/armadillo_bits/fn_nonzeros.hpp |only
inst/include/armadillo_bits/fn_norm_sparse.hpp | 1
inst/include/armadillo_bits/fn_randg.hpp | 9
inst/include/armadillo_bits/fn_repmat.hpp | 18
inst/include/armadillo_bits/fn_sort_index.hpp | 271 --------------
inst/include/armadillo_bits/fn_spsolve.hpp |only
inst/include/armadillo_bits/fn_svds.hpp |only
inst/include/armadillo_bits/forward_bones.hpp | 54 ++
inst/include/armadillo_bits/gmm_diag_meat.hpp | 17
inst/include/armadillo_bits/include_superlu.hpp |only
inst/include/armadillo_bits/mtOp_bones.hpp | 13
inst/include/armadillo_bits/mul_gemm.hpp | 2
inst/include/armadillo_bits/mul_gemv.hpp | 2
inst/include/armadillo_bits/op_nonzeros_bones.hpp |only
inst/include/armadillo_bits/op_nonzeros_meat.hpp |only
inst/include/armadillo_bits/op_shuffle_meat.hpp | 2
inst/include/armadillo_bits/op_sort_index_bones.hpp |only
inst/include/armadillo_bits/op_sort_index_meat.hpp |only
inst/include/armadillo_bits/sp_auxlib_bones.hpp | 24 +
inst/include/armadillo_bits/sp_auxlib_meat.hpp | 374 +++++++++++++++++++-
inst/include/armadillo_bits/spdiagview_bones.hpp |only
inst/include/armadillo_bits/spdiagview_meat.hpp |only
inst/include/armadillo_bits/spglue_join_bones.hpp |only
inst/include/armadillo_bits/spglue_join_meat.hpp |only
inst/include/armadillo_bits/spop_misc_bones.hpp | 25 +
inst/include/armadillo_bits/spop_misc_meat.hpp | 80 ++++
inst/include/armadillo_bits/subview_meat.hpp | 8
inst/include/armadillo_bits/superlu_bones.hpp |only
inst/include/armadillo_bits/superlu_wrapper.hpp |only
inst/include/armadillo_bits/typedef_elem.hpp | 37 +
inst/include/armadillo_bits/unwrap.hpp | 4
74 files changed, 1874 insertions(+), 948 deletions(-)
Title: Calculate the NLTT Statistic
Diff between nLTT versions 1.0 dated 2015-01-19 and 1.1 dated 2015-04-21
Description: Provides functions to calculate the normalised Lineage-Through-Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
Author: Thijs Janzen
Maintainer: Thijs Janzen
nLTT-1.0/nLTT/man/normLTTdiffABS.Rd |only
nLTT-1.0/nLTT/man/normLTTdiffSQ.Rd |only
nLTT-1.1/nLTT/DESCRIPTION | 12 ++++++------
nLTT-1.1/nLTT/MD5 | 15 +++++++--------
nLTT-1.1/nLTT/R/nLTTDiff.R | 10 ++++++++++
nLTT-1.1/nLTT/man/ABC_SMC_nLTT.Rd | 2 +-
nLTT-1.1/nLTT/man/MCMC_nLTT.Rd | 2 +-
nLTT-1.1/nLTT/man/nLTT-internal.Rd | 4 +++-
nLTT-1.1/nLTT/man/nLTT-package.Rd | 25 ++++++++++++++++---------
nLTT-1.1/nLTT/man/nLTTstat.Rd |only
10 files changed, 44 insertions(+), 26 deletions(-)
Title: Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Diff between GUILDS versions 1.2 dated 2014-09-07 and 1.2.1 dated 2015-04-21
Description: The GUILDS package combines a range of sampling formulas for the unified neutral model of biogeography and biodiversity. Alongside the sampling formulas, it includes methods to perform maximum likelihood optimization of the sampling formulas, methods to generate data given the neutral model, and methods to estimate the expected species abundance distribution. Sampling formulas included in the GUILDS package are the Etienne Sampling Formula (Etienne 2005), the guild sampling formula, where guilds are assumed to differ in dispersal ability (Janzen et al. 2015), and the guilds sampling formula conditioned on guild size (Janzen et al. 2015).
Author: Thijs Janzen
Maintainer: Thijs Janzen
DESCRIPTION | 16 ++++++++--------
MD5 | 14 +++++++-------
man/GUILDS-package.Rd | 17 +++++++++--------
man/logLikelihood.ESF.Rd | 2 +-
man/logLikelihood.Guilds.Conditional.Rd | 4 ++--
man/logLikelihood.Guilds.Rd | 6 +++---
man/maxLikelihood.Guilds.Conditional.Rd | 2 +-
man/maxLikelihood.Guilds.Rd | 2 +-
8 files changed, 32 insertions(+), 31 deletions(-)
Title: Another Object Orientation System
Diff between aoos versions 0.1.0 dated 2014-12-19 and 0.2.0 dated 2015-04-21
Description: Another implementation of object-orientation in R. Has reference
semantics and is built around S4.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz
DESCRIPTION | 20 +--
MD5 | 61 +++++++----
NAMESPACE | 11 +-
NEWS | 31 +++++
R/Accessor.R |only
R/Binary.R |only
R/Class.R |only
R/Private.R |only
R/Show.R |only
R/aoos.R | 34 ++----
R/defineClass.R | 83 ++++++++++-----
R/public-interfaces.R | 30 +++++
build/vignette.rds |binary
inst/doc/Introduction.R | 108 --------------------
inst/doc/Introduction.Rmd | 162 +------------------------------
inst/doc/Introduction.html | 177 +---------------------------------
inst/doc/aoosClasses.R |only
inst/doc/aoosClasses.Rmd |only
inst/doc/aoosClasses.html |only
inst/doc/referenceClasses.R |only
inst/doc/referenceClasses.Rmd |only
inst/doc/referenceClasses.html |only
man/Accessor.Rd |only
man/Binary.Rd |only
man/Class.Rd |only
man/Private.Rd |only
man/Show.Rd |only
man/aoos.Rd | 2
man/defineClass.Rd | 31 ++++-
man/publicInterface.Rd | 8 +
tests/testthat.R | 2
tests/testthat/test-Accessor.R |only
tests/testthat/test-Binary.R |only
tests/testthat/test-Class.R |only
tests/testthat/test-basics.R | 82 +++++++++++++--
tests/testthat/test-inheritance.R | 46 ++++++--
tests/testthat/test-publicInterface.R | 68 ++++++++++++-
tests/testthat/test-self.R | 8 -
tests/testthat/test-summary.R | 10 -
vignettes/Introduction.Rmd | 162 +------------------------------
vignettes/aoosClasses.Rmd |only
vignettes/referenceClasses.Rmd |only
42 files changed, 426 insertions(+), 710 deletions(-)
Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Diff between sitar versions 1.0.1 dated 2014-06-27 and 1.0.2 dated 2015-04-21
Description: Functions for fitting and plotting SITAR (Super Imposition by Translation And Rotation) growth curve models. SITAR is a shape-invariant model with a regression B-spline mean curve and subject-specific random effects on both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole
sitar-1.0.1/sitar/man/funcall.rd |only
sitar-1.0.1/sitar/man/makess.rd |only
sitar-1.0.1/sitar/man/mplot.rd |only
sitar-1.0.1/sitar/man/recalib.rd |only
sitar-1.0.1/sitar/man/xaxsd.rd |only
sitar-1.0.2/sitar/DESCRIPTION | 16 +-
sitar-1.0.2/sitar/MD5 | 61 ++++----
sitar-1.0.2/sitar/NAMESPACE | 8 -
sitar-1.0.2/sitar/NEWS | 34 ++++
sitar-1.0.2/sitar/R/LMSfit.R |only
sitar-1.0.2/sitar/R/lms2z.R | 10 -
sitar-1.0.2/sitar/R/mplot.R | 16 +-
sitar-1.0.2/sitar/R/plot.sitar.R | 60 +++++---
sitar-1.0.2/sitar/R/predict.R |only
sitar-1.0.2/sitar/R/sitar.R | 85 ++++++-----
sitar-1.0.2/sitar/R/sitarlib.R | 196 +++++----------------------
sitar-1.0.2/sitar/R/update.sitar.R |only
sitar-1.0.2/sitar/man/LMSfit.Rd |only
sitar-1.0.2/sitar/man/cLMS.Rd | 4
sitar-1.0.2/sitar/man/funcall.Rd |only
sitar-1.0.2/sitar/man/getData.sitar.Rd |only
sitar-1.0.2/sitar/man/getVarCov.sitar.Rd |only
sitar-1.0.2/sitar/man/heights.Rd | 25 +++
sitar-1.0.2/sitar/man/lms2z.Rd | 14 -
sitar-1.0.2/sitar/man/makess.Rd |only
sitar-1.0.2/sitar/man/mplot.Rd |only
sitar-1.0.2/sitar/man/plot.sitar.Rd | 10 -
sitar-1.0.2/sitar/man/plotclean.Rd | 10 -
sitar-1.0.2/sitar/man/predict.sitar.Rd |only
sitar-1.0.2/sitar/man/print.summary.sitar.Rd | 2
sitar-1.0.2/sitar/man/recalib.Rd |only
sitar-1.0.2/sitar/man/sitar-package.Rd | 40 +++--
sitar-1.0.2/sitar/man/sitar.Rd | 43 +++--
sitar-1.0.2/sitar/man/summary.sitar.Rd | 8 -
sitar-1.0.2/sitar/man/uk90.Rd | 12 +
sitar-1.0.2/sitar/man/ukwhopt.Rd | 17 +-
sitar-1.0.2/sitar/man/velout.Rd | 7
sitar-1.0.2/sitar/man/who06.Rd | 4
sitar-1.0.2/sitar/man/xaxsd.Rd |only
sitar-1.0.2/sitar/man/y2plot.Rd | 8 -
40 files changed, 348 insertions(+), 342 deletions(-)
Title: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Diff between RDML versions 0.8-3 dated 2015-04-08 and 0.8-4 dated 2015-04-21
Description: Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram
visualization for the structure of RDML object.
Author: Konstantin A. Blagodatskikh [cre, aut],
Stefan Roediger [aut],
Michal Burdukiewicz [aut]
Maintainer: Konstantin A. Blagodatskikh
CHANGELOG | 6
DESCRIPTION | 17 +-
MD5 | 30 +--
NAMESPACE | 24 +-
R/RDML.AsDendrogram.R | 2
R/RDML.Merge.R | 4
R/RDML.R | 10 -
R/RDML.init.R | 242 ++++++++++++++++------------
man/RDML.class.Rd | 378 ++++++++++++++++++++++-----------------------
man/asdendrogram-method.Rd | 60 +++----
man/astable-method.Rd | 156 +++++++++---------
man/getfdata-method.Rd | 114 ++++++-------
man/merge-method.Rd | 50 ++---
man/names.RDML.Rd | 48 ++---
man/new-method.Rd | 78 ++++-----
man/setfdata-method.Rd | 102 ++++++------
16 files changed, 678 insertions(+), 643 deletions(-)
Title: Running 'MLwiN' from Within R
Diff between R2MLwiN versions 0.8-0 dated 2015-03-04 and 0.8-1 dated 2015-04-21
Description: An R command interface to the 'MLwiN' multilevel
modelling software package.
Author: Zhengzheng Zhang [aut, cre],
Chris Charlton [aut],
Richard Parker [aut],
George Leckie [aut],
William Browne [aut]
Maintainer: Zhengzheng Zhang
DESCRIPTION | 18 -
MD5 | 38 +-
NEWS | 26 +
R/Formula.translate.R | 13
R/predLines.r | 47 +-
R/prior2macro.R | 24 -
R/runMLwiN.R | 785 +++++++++++++++++++++++++-------------------------
R/trajectories.R | 15
R/write.IGLS.R | 2
R/write.MCMC.R | 20 -
R/ws2foreign.R | 32 +-
demo/MCMCGuide07.R | 2
demo/MCMCGuide10.R | 2
demo/MCMCGuide17.R | 2
demo/MCMCGuide18.R | 4
demo/MCMCGuide23.R | 2
demo/MCMCGuide24.R | 2
demo/MCMCGuide25.R | 2
man/prior2macro.Rd | 11
man/runMLwiN.Rd | 42 +-
20 files changed, 578 insertions(+), 511 deletions(-)
Title: Advanced Tables for Markdown/HTML
Diff between htmlTable versions 1.2 dated 2015-03-03 and 1.3 dated 2015-04-21
Description: Tables with state-of-the-art layout elements such as
row spanners, column spanners, table spanners, zebra striping,
and more. While allowing advanced layout, the underlying CSS structure is
simple in order to maximize compatibility with word processors such as
MS Word or LibreOffice.
The package also contains a few text formatting functions that help outputting
text compatible with HTML/LaTeX.
Author: Max Gordon
Maintainer: Max Gordon
DESCRIPTION | 10 -
MD5 | 82 ++++-----
NAMESPACE | 2
NEWS | 6
R/htmlTable.R | 65 +++++--
R/htmlTable_helpers.R | 18 +-
R/txtFrmt.R | 75 +++++----
build/vignette.rds |binary
inst/doc/general.R | 38 +++-
inst/doc/general.Rmd | 72 ++++++--
inst/doc/general.html | 330 +++++++++++++++++++++++++++++-----------
inst/doc/tables.html | 24 +-
man/SCB.Rd | 2
man/htmlTable.Rd | 2
man/outputInt.Rd | 2
man/prAddCells.Rd | 2
man/prAddSemicolon2StrEnd.Rd | 2
man/prAttr4RgroupAdd.Rd | 2
man/prGetAlign.Rd | 2
man/prGetCgroupHeader.Rd | 2
man/prGetRgroupLine.Rd | 2
man/prGetRowlabelPos.Rd | 2
man/prGetStyle.Rd | 2
man/prGetThead.Rd | 2
man/prMergeClr.Rd | 2
man/prPrepareAlign.Rd | 2
man/prPrepareCgroup.Rd | 2
man/prPrepareColors.Rd | 2
man/prPrepareCss.Rd | 2
man/prSkipRownames.Rd | 2
man/prTblNo.Rd | 2
man/pvalueFormatter.Rd | 2
man/splitLines4Table.Rd | 2
man/tblNoLast.Rd | 2
man/tblNoNext.Rd | 2
man/txtInt.Rd | 2
man/txtMergeLines.Rd | 2
man/txtPval.Rd | 2
man/txtRound.Rd | 13 -
tests/testthat/test-htmlTable.R | 12 +
tests/testthat/test-txtFrmt.R | 12 +
vignettes/general.Rmd | 72 ++++++--
42 files changed, 609 insertions(+), 274 deletions(-)
Title: Tools for Sotkanet Open Data Portal
Diff between sotkanet versions 0.9.03 dated 2014-04-07 and 0.9.10 dated 2015-04-21
Description: Tools to download data from the Sotkanet open data portal.
Author: Leo Lahti, Einari Happonen, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti
sotkanet-0.9.03/sotkanet/README.md |only
sotkanet-0.9.03/sotkanet/inst/NEWS |only
sotkanet-0.9.03/sotkanet/inst/blog |only
sotkanet-0.9.03/sotkanet/inst/extras |only
sotkanet-0.9.03/sotkanet/inst/vign |only
sotkanet-0.9.03/sotkanet/vignettes/figure |only
sotkanet-0.9.10/sotkanet/DESCRIPTION | 20
sotkanet-0.9.10/sotkanet/LICENSE | 4
sotkanet-0.9.10/sotkanet/MD5 | 57 -
sotkanet-0.9.10/sotkanet/NAMESPACE | 4
sotkanet-0.9.10/sotkanet/R/firstlib.R | 18
sotkanet-0.9.10/sotkanet/R/internal.R | 90 -
sotkanet-0.9.10/sotkanet/R/sotkanet-package.R | 4
sotkanet-0.9.10/sotkanet/R/sotkanet.R | 75 -
sotkanet-0.9.10/sotkanet/README |only
sotkanet-0.9.10/sotkanet/build/vignette.rds |binary
sotkanet-0.9.10/sotkanet/inst/CITATION | 5
sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.R | 70 -
sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.Rmd | 52 -
sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.html | 508 ++++++----
sotkanet-0.9.10/sotkanet/man/GetDataSotkanet.Rd | 30
sotkanet-0.9.10/sotkanet/man/GetDataSotkanetSingleIndicator.Rd | 27
sotkanet-0.9.10/sotkanet/man/SotkanetCollect.Rd | 13
sotkanet-0.9.10/sotkanet/man/SotkanetData.Rd | 17
sotkanet-0.9.10/sotkanet/man/SotkanetIndicators.Rd | 20
sotkanet-0.9.10/sotkanet/man/SotkanetRegions.Rd | 11
sotkanet-0.9.10/sotkanet/man/base_url.Rd |only
sotkanet-0.9.10/sotkanet/man/sotkanet-package.Rd | 19
sotkanet-0.9.10/sotkanet/man/sotkanet.csv_query.Rd | 9
sotkanet-0.9.10/sotkanet/man/sotkanet.json_query.Rd | 9
sotkanet-0.9.10/sotkanet/vignettes/sotkanet_tutorial.Rmd | 52 -
31 files changed, 659 insertions(+), 455 deletions(-)
Title: Manage a CRAN-Style Local Repository
Diff between managelocalrepo versions 0.1.4 dated 2014-10-25 and 0.1.5 dated 2015-04-21
More information about managelocalrepo at CRAN
Description: This will allow easier management of a CRAN-style repository on
local networks (i.e. not on CRAN). This might be necessary where hosted
packages contain intellectual property owned by a corporation.
Author: Imanuel Costigan
Maintainer: Imanuel Costigan
DESCRIPTION | 10 +--
MD5 | 20 +++----
NAMESPACE | 2
NEWS | 4 +
R/manage_local_repo.R | 108 +++++++++++++++++++++----------------------
README.md | 10 +--
man/create_terminal_dir.Rd | 3 -
man/full_repo_dir.Rd | 3 -
man/managelocalrepo.Rd | 3 -
man/quick_release_package.Rd | 3 -
man/release_package.Rd | 5 +
11 files changed, 90 insertions(+), 81 deletions(-)
Permanent link
Title: Tools for Splitting, Applying and Combining Data
Diff between plyr versions 1.8.1 dated 2014-02-26 and 1.8.2 dated 2015-04-21
Description: A set of tools that solves a common set of problems: you
need to break a big problem down into manageable pieces, operate on each
piece and then put all the pieces back together. For example, you might
want to fit a model to each spatial location or time point in your study,
summarise data by panels or collapse high-dimensional arrays to simpler
summary statistics. The development of 'plyr' has been generously supported
by 'Becton Dickinson'.
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham
plyr-1.8.1/plyr/NEWS |only
plyr-1.8.1/plyr/R/utils-functional.r |only
plyr-1.8.1/plyr/inst/tests |only
plyr-1.8.1/plyr/tests/test-all.R |only
plyr-1.8.2/plyr/DESCRIPTION | 39 +--
plyr-1.8.2/plyr/MD5 | 334 +++++++++++++-------------
plyr-1.8.2/plyr/NAMESPACE | 3
plyr-1.8.2/plyr/R/RcppExports.R | 5
plyr-1.8.2/plyr/R/a_ply.r | 4
plyr-1.8.2/plyr/R/aaply.r | 3
plyr-1.8.2/plyr/R/adply.r | 17 +
plyr-1.8.2/plyr/R/d_ply.r | 4
plyr-1.8.2/plyr/R/daply.r | 2
plyr-1.8.2/plyr/R/data-frame.r | 6
plyr-1.8.2/plyr/R/ddply.r | 3
plyr-1.8.2/plyr/R/dimensions.r | 1
plyr-1.8.2/plyr/R/dlply.r | 2
plyr-1.8.2/plyr/R/each.r | 13 -
plyr-1.8.2/plyr/R/here.r | 2
plyr-1.8.2/plyr/R/id.r | 4
plyr-1.8.2/plyr/R/idataframe.r | 3
plyr-1.8.2/plyr/R/indexed.r | 2
plyr-1.8.2/plyr/R/join-all.r | 2
plyr-1.8.2/plyr/R/join.r | 2
plyr-1.8.2/plyr/R/l_ply.r | 57 +++-
plyr-1.8.2/plyr/R/ldply.r | 5
plyr-1.8.2/plyr/R/liply.r | 18 -
plyr-1.8.2/plyr/R/list-to-array.r | 3
plyr-1.8.2/plyr/R/llply.r | 4
plyr-1.8.2/plyr/R/mutate.r | 2
plyr-1.8.2/plyr/R/name-rows.r | 1
plyr-1.8.2/plyr/R/parallel.r | 15 -
plyr-1.8.2/plyr/R/plyr-deprecated.r |only
plyr-1.8.2/plyr/R/plyr.r | 2
plyr-1.8.2/plyr/R/progress-time.r | 2
plyr-1.8.2/plyr/R/progress.r | 20 -
plyr-1.8.2/plyr/R/quote.r | 7
plyr-1.8.2/plyr/R/rbind-fill-matrix.r | 2
plyr-1.8.2/plyr/R/rbind-fill.r | 10
plyr-1.8.2/plyr/R/rdply.r | 16 -
plyr-1.8.2/plyr/R/rename.r | 17 +
plyr-1.8.2/plyr/R/rlply.r | 8
plyr-1.8.2/plyr/R/splitter-a.r | 30 ++
plyr-1.8.2/plyr/R/summarise.r | 4
plyr-1.8.2/plyr/R/take.r | 2
plyr-1.8.2/plyr/R/try.r | 10
plyr-1.8.2/plyr/R/utils.r | 7
plyr-1.8.2/plyr/README.md | 2
plyr-1.8.2/plyr/man/a_ply.Rd | 72 ++---
plyr-1.8.2/plyr/man/aaply.Rd | 79 +++---
plyr-1.8.2/plyr/man/adply.Rd | 90 +++----
plyr-1.8.2/plyr/man/alply.Rd | 69 ++---
plyr-1.8.2/plyr/man/amv_dim.Rd | 5
plyr-1.8.2/plyr/man/amv_dimnames.Rd | 5
plyr-1.8.2/plyr/man/arrange.Rd | 9
plyr-1.8.2/plyr/man/as.data.frame.function.Rd | 18 -
plyr-1.8.2/plyr/man/as.list.split.Rd | 7
plyr-1.8.2/plyr/man/as.quoted.Rd | 11
plyr-1.8.2/plyr/man/baseball.Rd | 44 ++-
plyr-1.8.2/plyr/man/colwise.Rd | 12
plyr-1.8.2/plyr/man/compact.Rd | 5
plyr-1.8.2/plyr/man/count.Rd | 13 -
plyr-1.8.2/plyr/man/create_progress_bar.Rd | 8
plyr-1.8.2/plyr/man/d_ply.Rd | 62 ++--
plyr-1.8.2/plyr/man/daply.Rd | 59 ++--
plyr-1.8.2/plyr/man/ddply.Rd | 66 ++---
plyr-1.8.2/plyr/man/defaults.Rd | 7
plyr-1.8.2/plyr/man/desc.Rd | 5
plyr-1.8.2/plyr/man/dims.Rd | 5
plyr-1.8.2/plyr/man/dlply.Rd | 54 ++--
plyr-1.8.2/plyr/man/each.Rd | 7
plyr-1.8.2/plyr/man/empty.Rd | 5
plyr-1.8.2/plyr/man/eval.quoted.Rd | 8
plyr-1.8.2/plyr/man/failwith.Rd | 9
plyr-1.8.2/plyr/man/get-split.Rd | 9
plyr-1.8.2/plyr/man/here.Rd | 5
plyr-1.8.2/plyr/man/id.Rd | 7
plyr-1.8.2/plyr/man/id_var.Rd | 3
plyr-1.8.2/plyr/man/idata.frame.Rd | 5
plyr-1.8.2/plyr/man/indexed_array.Rd | 7
plyr-1.8.2/plyr/man/indexed_df.Rd | 10
plyr-1.8.2/plyr/man/is.discrete.Rd | 5
plyr-1.8.2/plyr/man/is.formula.Rd | 3
plyr-1.8.2/plyr/man/isplit2.Rd | 9
plyr-1.8.2/plyr/man/join.Rd | 24 -
plyr-1.8.2/plyr/man/join.keys.Rd | 9
plyr-1.8.2/plyr/man/join_all.Rd | 22 -
plyr-1.8.2/plyr/man/l_ply.Rd | 52 ++--
plyr-1.8.2/plyr/man/laply.Rd | 48 +--
plyr-1.8.2/plyr/man/ldply.Rd | 71 ++---
plyr-1.8.2/plyr/man/liply.Rd | 22 -
plyr-1.8.2/plyr/man/list_to_array.Rd | 11
plyr-1.8.2/plyr/man/list_to_dataframe.Rd | 12
plyr-1.8.2/plyr/man/list_to_vector.Rd | 5
plyr-1.8.2/plyr/man/llply.Rd | 42 +--
plyr-1.8.2/plyr/man/loop_apply.Rd | 9
plyr-1.8.2/plyr/man/m_ply.Rd | 54 ++--
plyr-1.8.2/plyr/man/maply.Rd | 64 ++--
plyr-1.8.2/plyr/man/mapvalues.Rd | 13 -
plyr-1.8.2/plyr/man/match_df.Rd | 11
plyr-1.8.2/plyr/man/mdply.Rd | 67 ++---
plyr-1.8.2/plyr/man/mlply.Rd | 56 ++--
plyr-1.8.2/plyr/man/mutate.Rd | 8
plyr-1.8.2/plyr/man/name_rows.Rd | 8
plyr-1.8.2/plyr/man/names.quoted.Rd | 3
plyr-1.8.2/plyr/man/nunique.Rd | 5
plyr-1.8.2/plyr/man/ozone.Rd | 3
plyr-1.8.2/plyr/man/plyr-deprecated.Rd |only
plyr-1.8.2/plyr/man/plyr.Rd | 70 ++---
plyr-1.8.2/plyr/man/print.quoted.Rd | 3
plyr-1.8.2/plyr/man/print.split.Rd | 7
plyr-1.8.2/plyr/man/progress_none.Rd | 3
plyr-1.8.2/plyr/man/progress_text.Rd | 9
plyr-1.8.2/plyr/man/progress_time.Rd | 3
plyr-1.8.2/plyr/man/progress_tk.Rd | 10
plyr-1.8.2/plyr/man/progress_win.Rd | 8
plyr-1.8.2/plyr/man/quickdf.Rd | 5
plyr-1.8.2/plyr/man/quoted.Rd | 13 -
plyr-1.8.2/plyr/man/r_ply.Rd | 13 -
plyr-1.8.2/plyr/man/raply.Rd | 14 -
plyr-1.8.2/plyr/man/rbind.fill.Rd | 12
plyr-1.8.2/plyr/man/rbind.fill.matrix.Rd | 8
plyr-1.8.2/plyr/man/rdply.Rd | 21 -
plyr-1.8.2/plyr/man/reduce_dim.Rd | 5
plyr-1.8.2/plyr/man/rename.Rd | 24 +
plyr-1.8.2/plyr/man/revalue.Rd | 13 -
plyr-1.8.2/plyr/man/rlply.Rd | 10
plyr-1.8.2/plyr/man/round_any.Rd | 12
plyr-1.8.2/plyr/man/splat.Rd | 5
plyr-1.8.2/plyr/man/split_indices.Rd | 14 -
plyr-1.8.2/plyr/man/split_labels.Rd | 8
plyr-1.8.2/plyr/man/splitter_a.Rd | 25 +
plyr-1.8.2/plyr/man/splitter_d.Rd | 9
plyr-1.8.2/plyr/man/strip_splits.Rd | 5
plyr-1.8.2/plyr/man/summarise.Rd | 7
plyr-1.8.2/plyr/man/take.Rd | 15 -
plyr-1.8.2/plyr/man/true.Rd | 5
plyr-1.8.2/plyr/man/try_default.Rd | 14 -
plyr-1.8.2/plyr/man/tryapply.Rd | 10
plyr-1.8.2/plyr/man/unrowname.Rd | 5
plyr-1.8.2/plyr/man/vaggregate.Rd | 18 -
plyr-1.8.2/plyr/src/RcppExports.cpp | 34 +-
plyr-1.8.2/plyr/src/split-numeric.cpp | 16 -
plyr-1.8.2/plyr/tests/testthat |only
plyr-1.8.2/plyr/tests/testthat.R |only
145 files changed, 1368 insertions(+), 1196 deletions(-)
Title: Using R to Run 'JAGS'
Diff between R2jags versions 0.05-03 dated 2015-03-05 and 0.5-6 dated 2015-04-21
Description: Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.
Author: Yu-Sung Su
Maintainer: Yu-Sung Su
CHANGELOG | 5 +++++
DESCRIPTION | 14 +++++++-------
MD5 | 4 ++--
3 files changed, 14 insertions(+), 9 deletions(-)
Title: Relationship Between Species and Groups of Sites
Diff between indicspecies versions 1.7.4 dated 2014-11-24 and 1.7.5 dated 2015-04-21
Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites. Also includes functions to measure species niche breadth using resource categories.
Author: Miquel De Caceres, Florian Jansen
Maintainer: Miquel De Caceres
indicspecies-1.7.4/indicspecies/R/nichearea.R |only
indicspecies-1.7.5/indicspecies/DESCRIPTION | 12 +-
indicspecies-1.7.5/indicspecies/MD5 | 28 ++---
indicspecies-1.7.5/indicspecies/NAMESPACE | 7 +
indicspecies-1.7.5/indicspecies/R/indicators.r | 2
indicspecies-1.7.5/indicspecies/R/plotcoverage.r | 56 +++++-----
indicspecies-1.7.5/indicspecies/R/summary.indicators.R |only
indicspecies-1.7.5/indicspecies/build/vignette.rds |binary
indicspecies-1.7.5/indicspecies/inst/doc/indicspeciesTutorial.R | 6 -
indicspecies-1.7.5/indicspecies/inst/doc/indicspeciesTutorial.Rnw | 6 -
indicspecies-1.7.5/indicspecies/man/coverage.Rd | 3
indicspecies-1.7.5/indicspecies/man/indicators.Rd | 9 +
indicspecies-1.7.5/indicspecies/man/indicspecies-package.Rd | 6 -
indicspecies-1.7.5/indicspecies/man/nichevar.Rd | 31 ++++-
indicspecies-1.7.5/indicspecies/vignettes/PigeonExample-005.pdf |binary
indicspecies-1.7.5/indicspecies/vignettes/indicspeciesTutorial.Rnw | 6 -
16 files changed, 100 insertions(+), 72 deletions(-)
Title: DNA Profiling Evidence Analysis
Diff between DNAprofiles versions 0.3 dated 2015-04-20 and 0.3.1 dated 2015-04-21
Description: Methods for studying forensic DNA profiling, in particular familial database searches.
Author: Maarten Kruijver
Maintainer: Maarten Kruijver
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/misc.R | 2 +-
build/vignette.rds |binary
inst/doc/exceedance-probabilities.Rmd | 2 +-
inst/doc/exceedance-probabilities.html | 12 ++++++------
man/normalize.freqs.Rd | 2 +-
vignettes/exceedance-probabilities.Rmd | 2 +-
9 files changed, 27 insertions(+), 22 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design For MTA
Diff between dfmta versions 1.1-2 dated 2015-01-24 and 1.2 dated 2015-04-21
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization".
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
configure | 18 +++++++++---------
src/dfmta.cpp | 33 ++++++++++++++-------------------
4 files changed, 32 insertions(+), 37 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Diff between dfcomb versions 2.0-2 dated 2015-01-24 and 2.1 dated 2015-04-21
Description: Phase I/II adaptive dose-finding design for combination
studies. Several methods are proposed depending on the type of
combinations: (1) the combination of two cytotoxic agents, and (2)
combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
configure | 18 +++++++++---------
src/plateau.cpp | 29 ++++++++++-------------------
4 files changed, 29 insertions(+), 38 deletions(-)
Title: Sensitivity Analysis for Causal Inference
Diff between treatSens versions 1.0 dated 2014-09-12 and 1.1 dated 2015-04-21
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie, Masataka Harada, Jennifer Hill
Maintainer: "Nicole Bohme Carnegie"
DESCRIPTION | 10 -
MD5 | 28 ++--
NAMESPACE | 3
R/X_partials.R | 8 -
R/calc_range.R | 127 ++++++++-----------
R/grid_range.R | 2
R/housekeeping.R | 31 +++-
R/object_def.R | 9 +
R/sensPlot.R | 302 +++++++++++++++++++++++++++++++++++++----------
R/treatSens.R | 17 +-
R/warnings.R | 7 -
inst/CITATION | 7 -
man/sensPlot.Rd | 2
man/treatSens-package.Rd | 2
man/treatSens.Rd | 14 --
15 files changed, 373 insertions(+), 196 deletions(-)
Title: Database Interface and MySQL Driver for R
Diff between RMySQL versions 0.10.2 dated 2015-02-24 and 0.10.3 dated 2015-04-21
Description: Implements DBI-compliant Interface to MySQL and MariaDB Databases.
Author: Jeroen Ooms [aut, cre],
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms
RMySQL-0.10.2/RMySQL/R/zzz_compatibility.R |only
RMySQL-0.10.3/RMySQL/DESCRIPTION | 10 -
RMySQL-0.10.3/RMySQL/MD5 | 55 ++++------
RMySQL-0.10.3/RMySQL/NAMESPACE | 3
RMySQL-0.10.3/RMySQL/R/data-type.R | 3
RMySQL-0.10.3/RMySQL/man/MySQLConnection-class.Rd | 2
RMySQL-0.10.3/RMySQL/man/MySQLDriver-class.Rd | 2
RMySQL-0.10.3/RMySQL/man/MySQLResult-class.Rd | 2
RMySQL-0.10.3/RMySQL/man/constants.Rd | 2
RMySQL-0.10.3/RMySQL/man/db-meta.Rd | 5
RMySQL-0.10.3/RMySQL/man/dbApply.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbColumnInfo-MySQLConnection-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbConnect-MySQLDriver-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbDataType-MySQLDriver-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbEscapeStrings.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbGetInfo-MySQLDriver-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbNextResult.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbQuoteIdentifier-MySQLConnection-character-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbReadTable.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbUnloadDriver-MySQLDriver-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/dbWriteTable.Rd | 2
RMySQL-0.10.3/RMySQL/man/isIdCurrent.Rd | 2
RMySQL-0.10.3/RMySQL/man/make.db.names-MySQLConnection-character-method.Rd | 2
RMySQL-0.10.3/RMySQL/man/mysqlBuildTableDefinition.Rd | 2
RMySQL-0.10.3/RMySQL/man/mysqlClientLibraryVersions.Rd | 2
RMySQL-0.10.3/RMySQL/man/mysqlHasDefault.Rd | 2
RMySQL-0.10.3/RMySQL/man/query.Rd | 2
RMySQL-0.10.3/RMySQL/man/result-meta.Rd | 2
RMySQL-0.10.3/RMySQL/man/transactions.Rd | 2
29 files changed, 58 insertions(+), 64 deletions(-)
Title: Read, Write, Manipulate and Convert GenAlEx-Format Genotype
Files
Diff between readGenalex versions 0.4.1 dated 2015-01-12 and 1.0 dated 2015-04-21
Description: A collection of R functions to read, write, manipulate, and
convert genotype data in GenAlEx format. GenAlEx is a widely-used Excel
plugin for manipulating and analysing genotype data. This package reads
GenAlEx data from text or Excel files and creates an annotated data frame
of class 'genalex'. Several functions are provided for accessing,
manipulating, printing, writing and converting this data. GenAlEx and its
documentation are available at http://biology-assets.anu.edu.au/GenAlEx.
Author: Douglas G. Scofield [aut, cre]
Maintainer: Douglas G. Scofield
readGenalex-0.4.1/readGenalex/R/computeGenalexColumns.R |only
readGenalex-0.4.1/readGenalex/R/dropGenalexLoci.R |only
readGenalex-0.4.1/readGenalex/R/getGenalexLocus.R |only
readGenalex-0.4.1/readGenalex/R/is.genalex.R |only
readGenalex-0.4.1/readGenalex/R/printGenalexGenotype.R |only
readGenalex-0.4.1/readGenalex/R/putGenalexLocus.R |only
readGenalex-0.4.1/readGenalex/R/readGenalex-internal.R |only
readGenalex-0.4.1/readGenalex/R/reduceGenalexPloidy.R |only
readGenalex-0.4.1/readGenalex/R/reorderGenalexLoci.R |only
readGenalex-0.4.1/readGenalex/data/example_genotypes.RData |only
readGenalex-0.4.1/readGenalex/data/example_genotypes.txt.gz |only
readGenalex-0.4.1/readGenalex/man/computeGenalexColumns.Rd |only
readGenalex-0.4.1/readGenalex/man/dropGenalexLoci.Rd |only
readGenalex-0.4.1/readGenalex/man/example_genotypes.Rd |only
readGenalex-0.4.1/readGenalex/man/getGenalexLocus.Rd |only
readGenalex-0.4.1/readGenalex/man/printGenalexGenotype.Rd |only
readGenalex-0.4.1/readGenalex/man/putGenalexLocus.Rd |only
readGenalex-0.4.1/readGenalex/man/reduceGenalexPloidy.Rd |only
readGenalex-0.4.1/readGenalex/man/reorderGenalexLoci.Rd |only
readGenalex-1.0/readGenalex/DESCRIPTION | 33
readGenalex-1.0/readGenalex/MD5 | 85
readGenalex-1.0/readGenalex/NAMESPACE | 60
readGenalex-1.0/readGenalex/NEWS |only
readGenalex-1.0/readGenalex/R/checkNullAlleles.R |only
readGenalex-1.0/readGenalex/R/readGenalex-Genepop.R |only
readGenalex-1.0/readGenalex/R/readGenalex-data.R |only
readGenalex-1.0/readGenalex/R/readGenalex-deprecated.R |only
readGenalex-1.0/readGenalex/R/readGenalex-genetics.R |only
readGenalex-1.0/readGenalex/R/readGenalex-package.R |only
readGenalex-1.0/readGenalex/R/readGenalex-pegas.R |only
readGenalex-1.0/readGenalex/R/readGenalex-readwrite.R |only
readGenalex-1.0/readGenalex/R/readGenalex.R | 1624 +++++++++-
readGenalex-1.0/readGenalex/README.md |only
readGenalex-1.0/readGenalex/data/Qagr_adult_genotypes.RData |only
readGenalex-1.0/readGenalex/data/Qagr_pericarp_genotypes.RData |only
readGenalex-1.0/readGenalex/inst |only
readGenalex-1.0/readGenalex/man/Qagr_adult_genotypes.Rd |only
readGenalex-1.0/readGenalex/man/Qagr_pericarp_genotypes.Rd |only
readGenalex-1.0/readGenalex/man/addLocus.Rd |only
readGenalex-1.0/readGenalex/man/as.data.frame.genalex.Rd |only
readGenalex-1.0/readGenalex/man/as.genalex.Rd |only
readGenalex-1.0/readGenalex/man/as.genetics.Rd |only
readGenalex-1.0/readGenalex/man/as.loci.genalex.Rd |only
readGenalex-1.0/readGenalex/man/cbind.genalex.Rd |only
readGenalex-1.0/readGenalex/man/checkNullAlleles.Rd |only
readGenalex-1.0/readGenalex/man/dropLocus.Rd |only
readGenalex-1.0/readGenalex/man/extra.Rd |only
readGenalex-1.0/readGenalex/man/genalex.Rd |only
readGenalex-1.0/readGenalex/man/getLocus.Rd |only
readGenalex-1.0/readGenalex/man/getLocusColumns.Rd |only
readGenalex-1.0/readGenalex/man/getPopulation.Rd |only
readGenalex-1.0/readGenalex/man/is.genalex.Rd | 73
readGenalex-1.0/readGenalex/man/joinGenotypes.Rd |only
readGenalex-1.0/readGenalex/man/ploidy.Rd |only
readGenalex-1.0/readGenalex/man/printGenotype.Rd |only
readGenalex-1.0/readGenalex/man/rbind.genalex.Rd |only
readGenalex-1.0/readGenalex/man/readGenalex-deprecated.Rd |only
readGenalex-1.0/readGenalex/man/readGenalex-package.Rd | 67
readGenalex-1.0/readGenalex/man/readGenalex.Rd | 165 -
readGenalex-1.0/readGenalex/man/readGenalexExcel.Rd |only
readGenalex-1.0/readGenalex/man/reducePloidy.Rd |only
readGenalex-1.0/readGenalex/man/reorderLoci.Rd |only
readGenalex-1.0/readGenalex/man/replaceLocus.Rd |only
readGenalex-1.0/readGenalex/man/splitGenotypes.Rd |only
readGenalex-1.0/readGenalex/man/summary.genalex.Rd |only
readGenalex-1.0/readGenalex/man/writeGenalex.Rd |only
readGenalex-1.0/readGenalex/man/writeGenalexExcel.Rd |only
readGenalex-1.0/readGenalex/man/writeGenepop.Rd |only
readGenalex-1.0/readGenalex/tests |only
69 files changed, 1953 insertions(+), 154 deletions(-)
Title: Statistical Tools for Probing Moderation Effects
Diff between probemod versions 0.1 dated 2015-03-04 and 0.2 dated 2015-04-21
Description: Contains functions that are useful for probing moderation effects including techniques such as pick-a-point (also known as spotlight analysis), Johnson-Neyman (also known as floodlight analysis). Plot functions are also provided to facilitate visualization of results.
Author: Jiat Chow Tan [aut, cre]
Maintainer: Jiat Chow Tan
DESCRIPTION | 8 -
MD5 | 27 +++--
NAMESPACE | 1
NEWS |only
R/jn.R | 236 +++++++++++++++++++++++++++++++++---------------
R/pickapoint.R | 96 +++++++++++++++----
R/plot.jn.R | 48 ++++-----
R/plot.pickapoint.R |only
R/print.jn.R | 9 +
R/print.pickapoint.R | 2
man/jn.Rd | 17 ++-
man/pickapoint.Rd | 20 ++--
man/plot.jn.Rd | 19 ++-
man/plot.pickapoint.Rd |only
man/print.jn.Rd | 2
man/print.pickapoint.Rd | 2
16 files changed, 327 insertions(+), 160 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 2.1.3 dated 2015-01-31 and 2.1.4 dated 2015-04-21
Description: Extensive functions for the theory of L-moments (LMs) in addition to probability-weighted moments (PWMs), and parameter (p) estimation for numerous familiar and not-so-familiar distributions. Estimation of LMs for the same distributions is provided as are L-moment ratio diagrams. Estimation of LMs for right-tail and left-tail censoring by known or unknown threshold and also by indicator variable is available. Asymmetric trimmed LMs (TL-moments, TLMs) are supported as are numerical integrations to dynamically compute trajectories of select TLM ratios for TL-moment ratio diagram construction. LMs of residual (resid.) and reversed (rev.) resid. life are implemented along with 13 operators on quantile functions that are useful in reliability, lifetime, and survival analysis. Exact analytical bootstrap estimates of order statistics, LMs, and variances-covariances of LMs are provided. The Harri-Coble Tau34-squared Test for Normality is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asymmetric (Asy.) Exponential (Exp.) Power [L], Asy. Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen.) Exp. Poisson [L], Gen. Extreme Value [L], Gen. Lambda [L,TL], Gen. Logistic [L), Gen. Normal [L], Gen. Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Residual Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev. Gumbel [L+RC], Rice/Rician (L), Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. LMs have multivariate analogs; the sample L-comoments (LCMs) are implemented and might have considerable application with copulas because LCMs measure asymmetric association and higher comoments or comovements of variables.
Author: William Asquith
Maintainer: William Asquith
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 4 ++++
inst/CITATION | 1 -
4 files changed, 11 insertions(+), 8 deletions(-)
Title: Tools for Working with ICD-9 Codes, and Finding Comorbidities
Diff between icd9 versions 1.1 dated 2015-03-12 and 1.2 dated 2015-04-21
Description: Calculate comorbidities, Charlson scores, perform fast and accurate
validation, conversion, manipulation, filtering and comparison of ICD-9-CM
(clinical modification) codes. ICD-9 codes appear numeric but leading and
trailing zeroes, and both decimal and non-decimal "short" format codes
exist. The package enables a work flow from raw lists of ICD-9 codes from
hospital billing databases to comorbidities. ICD-9 to comorbidity mappings
from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included. Any
other mapping of codes, such as ICD-10, to comorbidities can be used.
Author: Jack O. Wasey [aut, cre, cph],
William Murphy [ctb]
Maintainer: Jack O. Wasey
icd9-1.1/icd9/data/ahrqComorbidAll.RData |only
icd9-1.1/icd9/data/icd9Chapters.RData |only
icd9-1.1/icd9/inst/extdata/CMS32_DESC_LONG_DX.txt |only
icd9-1.1/icd9/inst/extdata/CMS32_DESC_SHORT_DX.txt |only
icd9-1.1/icd9/inst/extdata/ccs_multi_dx_tool_2013.csv |only
icd9-1.1/icd9/man/icd9GenerateSysData.Rd |only
icd9-1.1/icd9/man/icd9Is.Rd |only
icd9-1.1/icd9/man/icd9ParseAndSaveMappings.Rd |only
icd9-1.1/icd9/man/parseIcd9Descriptions.Rd |only
icd9-1.1/icd9/man/read.zip.url.Rd |only
icd9-1.1/icd9/src/Makevars |only
icd9-1.2/icd9/.Rinstignore |only
icd9-1.2/icd9/COPYING |only
icd9-1.2/icd9/DESCRIPTION | 28
icd9-1.2/icd9/MD5 | 292 +++---
icd9-1.2/icd9/NAMESPACE | 25
icd9-1.2/icd9/R/RcppExports.R | 114 --
icd9-1.2/icd9/R/RcppExportsShim.R |only
icd9-1.2/icd9/R/benchmark.R | 31
icd9-1.2/icd9/R/comorbid.R | 72 -
icd9-1.2/icd9/R/condense.R |only
icd9-1.2/icd9/R/convert.R | 124 +-
icd9-1.2/icd9/R/datadocs.R | 95 ++
icd9-1.2/icd9/R/explain.R | 244 +----
icd9-1.2/icd9/R/filter.R | 69 +
icd9-1.2/icd9/R/icd9-package.R | 17
icd9-1.2/icd9/R/manip.R | 40
icd9-1.2/icd9/R/parse-comorbid.R |only
icd9-1.2/icd9/R/parse-rtf.R |only
icd9-1.2/icd9/R/parse.R | 833 ++++++++----------
icd9-1.2/icd9/R/ranges.R | 314 +++---
icd9-1.2/icd9/R/real.R |only
icd9-1.2/icd9/R/sas.R | 58 -
icd9-1.2/icd9/R/score.R | 123 ++
icd9-1.2/icd9/R/sysdata.rda |binary
icd9-1.2/icd9/R/util.R | 167 ++-
icd9-1.2/icd9/R/valid.R | 112 +-
icd9-1.2/icd9/R/zzz.R | 43
icd9-1.2/icd9/README.md | 47 -
icd9-1.2/icd9/build/vignette.rds |binary
icd9-1.2/icd9/cleanup |only
icd9-1.2/icd9/configure |only
icd9-1.2/icd9/configure.ac |only
icd9-1.2/icd9/configure.win |only
icd9-1.2/icd9/data/ahrqComorbid.RData |binary
icd9-1.2/icd9/data/elixComorbid.RData |binary
icd9-1.2/icd9/data/icd9Billable.RData |only
icd9-1.2/icd9/data/icd9Chapters.rda |only
icd9-1.2/icd9/data/icd9Hierarchy.RData |binary
icd9-1.2/icd9/data/mappingNames.rda |binary
icd9-1.2/icd9/data/quanDeyoComorbid.RData |binary
icd9-1.2/icd9/data/quanElixComorbid.RData |binary
icd9-1.2/icd9/data/vermont_dx.RData |only
icd9-1.2/icd9/inst/doc/introduction.R | 45
icd9-1.2/icd9/inst/doc/introduction.Rmd | 50 -
icd9-1.2/icd9/inst/doc/introduction.html | 220 +++-
icd9-1.2/icd9/inst/extdata/all-covariates.xls |only
icd9-1.2/icd9/inst/include/icd9_RcppExports.h | 168 +--
icd9-1.2/icd9/man/ahrqComorbid.Rd | 2
icd9-1.2/icd9/man/ahrqComorbidAll.Rd | 2
icd9-1.2/icd9/man/convert.Rd | 58 -
icd9-1.2/icd9/man/cr.Rd | 2
icd9-1.2/icd9/man/elixComorbid.Rd | 2
icd9-1.2/icd9/man/elixComorbidNames.Rd | 2
icd9-1.2/icd9/man/generateSysData.Rd |only
icd9-1.2/icd9/man/icd9-package.Rd | 2
icd9-1.2/icd9/man/icd9AddLeadingZeroes.Rd | 23
icd9-1.2/icd9/man/icd9Benchmark.Rd | 2
icd9-1.2/icd9/man/icd9Billable.Rd |only
icd9-1.2/icd9/man/icd9Chapters.Rd | 5
icd9-1.2/icd9/man/icd9ChaptersToMap.Rd | 8
icd9-1.2/icd9/man/icd9Charlson.Rd | 12
icd9-1.2/icd9/man/icd9Children.Rd | 21
icd9-1.2/icd9/man/icd9Comorbid.Rd | 27
icd9-1.2/icd9/man/icd9ComorbidDfToMat.Rd | 20
icd9-1.2/icd9/man/icd9ComorbidMatToDf.Rd | 19
icd9-1.2/icd9/man/icd9Condense.Rd | 39
icd9-1.2/icd9/man/icd9Count.Rd | 13
icd9-1.2/icd9/man/icd9DiffComorbid.Rd | 2
icd9-1.2/icd9/man/icd9DropLeadingZeroes.Rd | 15
icd9-1.2/icd9/man/icd9ExpandMinor.Rd | 9
icd9-1.2/icd9/man/icd9ExpandRange.Rd | 36
icd9-1.2/icd9/man/icd9Explain.Rd | 27
icd9-1.2/icd9/man/icd9ExtractAlphaNumeric.Rd | 2
icd9-1.2/icd9/man/icd9FilterInvalid.Rd | 14
icd9-1.2/icd9/man/icd9FilterPoa.Rd | 28
icd9-1.2/icd9/man/icd9FilterValid.Rd | 13
icd9-1.2/icd9/man/icd9GetChapters.Rd | 9
icd9-1.2/icd9/man/icd9GetMajor.Rd |only
icd9-1.2/icd9/man/icd9GetValid.Rd | 12
icd9-1.2/icd9/man/icd9GuessIsShort.Rd | 2
icd9-1.2/icd9/man/icd9Hierarchy.Rd | 2
icd9-1.2/icd9/man/icd9InReferenceCode.Rd | 5
icd9-1.2/icd9/man/icd9IsA.Rd |only
icd9-1.2/icd9/man/icd9IsBillable.Rd |only
icd9-1.2/icd9/man/icd9IsN.Rd |only
icd9-1.2/icd9/man/icd9IsReal.Rd | 37
icd9-1.2/icd9/man/icd9IsValid.Rd | 21
icd9-1.2/icd9/man/icd9IsValidMapping.Rd | 2
icd9-1.2/icd9/man/icd9LongToWide.Rd | 35
icd9-1.2/icd9/man/icd9PoaChoices.Rd | 2
icd9-1.2/icd9/man/icd9ShortToDecimal.Rd |only
icd9-1.2/icd9/man/icd9Sort.Rd | 10
icd9-1.2/icd9/man/icd9VanWalraven.Rd |only
icd9-1.2/icd9/man/icd9WideToLong.Rd | 28
icd9-1.2/icd9/man/listTrimFlat.Rd |only
icd9-1.2/icd9/man/logicalToBinary.Rd | 8
icd9-1.2/icd9/man/parseAhrqSas.Rd | 19
icd9-1.2/icd9/man/parseAndSaveQuick.Rd |only
icd9-1.2/icd9/man/parseElix.Rd | 4
icd9-1.2/icd9/man/parseIcd9Chapters.Rd | 14
icd9-1.2/icd9/man/parseLeafDescriptionsAll.Rd |only
icd9-1.2/icd9/man/parseLeafDescriptionsVersion.Rd |only
icd9-1.2/icd9/man/parseQuanDeyoSas.Rd | 4
icd9-1.2/icd9/man/parseQuanElix.Rd | 4
icd9-1.2/icd9/man/parseRtfFifthDigitRanges.Rd |only
icd9-1.2/icd9/man/parseRtfLines.Rd |only
icd9-1.2/icd9/man/parseRtfYear.Rd |only
icd9-1.2/icd9/man/quanDeyoComorbid.Rd | 2
icd9-1.2/icd9/man/quanElixComorbid.Rd | 2
icd9-1.2/icd9/man/sasDropOtherAssignment.Rd | 2
icd9-1.2/icd9/man/sasExtractLetStrings.Rd | 2
icd9-1.2/icd9/man/sasFormatExtract.Rd | 10
icd9-1.2/icd9/man/sasParseAssignments.Rd | 2
icd9-1.2/icd9/man/strMultiMatch.Rd | 5
icd9-1.2/icd9/man/stripRtf.Rd |only
icd9-1.2/icd9/man/swapNamesWithVals.Rd |only
icd9-1.2/icd9/man/vermont_dx.Rd |only
icd9-1.2/icd9/src/Makevars.in |only
icd9-1.2/icd9/src/Makevars.win | 3
icd9-1.2/icd9/src/Makevars.win64 |only
icd9-1.2/icd9/src/RcppExports.cpp | 238 +----
icd9-1.2/icd9/src/comorbid.cpp | 36
icd9-1.2/icd9/src/comorbidCommon.cpp | 18
icd9-1.2/icd9/src/comorbidSetup.cpp | 189 ++--
icd9-1.2/icd9/src/config.h.in |only
icd9-1.2/icd9/src/config.h.win |only
icd9-1.2/icd9/src/convert.cpp | 238 ++---
icd9-1.2/icd9/src/convert.h | 37
icd9-1.2/icd9/src/is.cpp | 59 -
icd9-1.2/icd9/src/is.h | 22
icd9-1.2/icd9/src/local.h | 41
icd9-1.2/icd9/src/longToWide.cpp | 50 -
icd9-1.2/icd9/src/manip.cpp | 38
icd9-1.2/icd9/src/manip.h | 26
icd9-1.2/icd9/src/ranges.cpp | 280 +++---
icd9-1.2/icd9/src/ranges.h | 22
icd9-1.2/icd9/src/util.cpp | 25
icd9-1.2/icd9/src/util.h | 22
icd9-1.2/icd9/tests/test-all.R | 30
icd9-1.2/icd9/tests/testthat/helper-base.R | 31
icd9-1.2/icd9/tests/testthat/test-LongToWide.R | 24
icd9-1.2/icd9/tests/testthat/test-billable.R |only
icd9-1.2/icd9/tests/testthat/test-comorbid-calcs.R | 17
icd9-1.2/icd9/tests/testthat/test-comorbid.R | 602 +++++++++----
icd9-1.2/icd9/tests/testthat/test-condense.R |only
icd9-1.2/icd9/tests/testthat/test-convert.R | 76 -
icd9-1.2/icd9/tests/testthat/test-explain.R | 215 ----
icd9-1.2/icd9/tests/testthat/test-filter.R | 17
icd9-1.2/icd9/tests/testthat/test-hierarchy.R |only
icd9-1.2/icd9/tests/testthat/test-icd9.R | 69 +
icd9-1.2/icd9/tests/testthat/test-is.R | 53 -
icd9-1.2/icd9/tests/testthat/test-parse.R |only
icd9-1.2/icd9/tests/testthat/test-ranges.R | 374 ++++----
icd9-1.2/icd9/tests/testthat/test-reshape.R | 17
icd9-1.2/icd9/tests/testthat/test-sas.R | 30
icd9-1.2/icd9/tests/testthat/test-score.R | 61 +
icd9-1.2/icd9/tests/testthat/test-util.R | 17
icd9-1.2/icd9/tests/testthat/test-valid.R | 67 +
icd9-1.2/icd9/tools |only
icd9-1.2/icd9/vignettes/introduction.Rmd | 50 -
171 files changed, 4144 insertions(+), 2929 deletions(-)
Title: Syntax Highlighting for R Source Code
Diff between highr versions 0.4.1 dated 2015-03-29 and 0.5 dated 2015-04-21
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (http://www.andre-simon.de).
Author: Christopher Gandrud [ctb],
Qiang Li [ctb],
Yixuan Qiu [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
highr-0.4.1/highr/tests/test-R2 |only
highr-0.5/highr/DESCRIPTION | 11 +++++-----
highr-0.5/highr/MD5 | 15 ++++++--------
highr-0.5/highr/NEWS | 6 +++++
highr-0.5/highr/R/highlight.R | 30 +++++++---------------------
highr-0.5/highr/build/vignette.rds |binary
highr-0.5/highr/man/hilight.Rd | 19 ++++++-----------
highr-0.5/highr/tests/test-all.R | 2 -
highr-0.5/highr/tests/testit/test-hilight.R | 2 -
9 files changed, 36 insertions(+), 49 deletions(-)
Title: Generalized Waring Regression Model for Count Data
Diff between GWRM versions 1.1 dated 2010-02-03 and 2.0 dated 2015-04-21
Description: Statistical functions to fit, validate and describe a Generalized
Waring Regression Model (GWRM).
Author: Antonio Jose Saez-Castillo [aut, cre],
Silverio Vilchez-Lopez [aut],
Maria Jose Olmo-Jimenez [aut],
Jose Rodriguez-Avi [aut],
Antonio Conde-Sanchez [aut],
Ana Maria Martinez-Rodriguez [aut]
Maintainer: Antonio Jose Saez-Castillo
GWRM-1.1/GWRM/R/GWRM.add.R |only
GWRM-1.1/GWRM/R/GWRM.display.R |only
GWRM-1.1/GWRM/R/GWRM.fit.R |only
GWRM-1.1/GWRM/R/GWRM.stats.R |only
GWRM-1.1/GWRM/man/GWRM.add.Rd |only
GWRM-1.1/GWRM/man/GWRM.display.Rd |only
GWRM-1.1/GWRM/man/GWRM.fit.Rd |only
GWRM-1.1/GWRM/man/GWRM.stats.Rd |only
GWRM-1.1/GWRM/man/goals.rd |only
GWRM-2.0/GWRM/DESCRIPTION | 45 ++++++++++++++++++++++----------------
GWRM-2.0/GWRM/MD5 |only
GWRM-2.0/GWRM/NAMESPACE | 23 +++++++++++++++----
GWRM-2.0/GWRM/R/gw.r |only
GWRM-2.0/GWRM/build |only
GWRM-2.0/GWRM/inst/CITATION | 36 ++++++++++++------------------
GWRM-2.0/GWRM/inst/NEWS.Rd |only
GWRM-2.0/GWRM/man/GWRM-package.Rd |only
GWRM-2.0/GWRM/man/add1.gw.Rd |only
GWRM-2.0/GWRM/man/drop1.gw.Rd |only
GWRM-2.0/GWRM/man/goals.Rd |only
GWRM-2.0/GWRM/man/gw.Rd |only
GWRM-2.0/GWRM/man/partvar.Rd |only
GWRM-2.0/GWRM/man/predict.gw.Rd |only
GWRM-2.0/GWRM/man/residuals.gw.Rd |only
24 files changed, 60 insertions(+), 44 deletions(-)
Title: Genealogical Data Analysis
Diff between GENLIB versions 1.0.3 dated 2015-03-20 and 1.0.4 dated 2015-04-21
Description: Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations.
Author: Louis Houde [aut],
Jean-Francois Lefebvre [aut],
Valery Roy-Lagace [aut],
Sebastien Lemieux [aut],
Michael J. Fromberger [ctb],
Marie-Helene Roy-Gagnon [cre]
Maintainer: Marie-Helene Roy-Gagnon
DESCRIPTION | 7
MD5 | 66 +++----
NAMESPACE | 2
R/classes_methodes.R | 98 +++++------
R/fonctionsBase.R | 32 ++-
R/fonctionsPAR.R | 6
R/fonctionsPriv.R | 314 ++++++++++++++++++-------------------
R/fonctionsSimul.R | 4
R/fonctionsStat.R | 20 +-
man/GLCGMatrixGroupSingle-class.Rd | 26 +--
man/GLgen-class.Rd | 2
man/GLgroupe-class.Rd | 16 -
man/gen.completenessVar.Rd | 12 -
man/gen.f.Rd | 14 -
man/gen.find.Min.Distance.MRCA.Rd | 14 -
man/gen.findFounders.Rd | 12 -
man/gen.findMRCA.Rd | 4
man/gen.gc.Rd | 7
man/gen.half.founder.Rd | 2
man/gen.implex.Rd | 14 -
man/gen.implexVar.Rd | 14 -
man/gen.meangendepth.Rd | 4
man/gen.meangendepthVar.Rd | 10 -
man/gen.phi.Rd | 2
man/gen.phiCI.Rd | 14 -
man/gen.phiMean.Rd | 12 -
man/gen.phiOver.Rd | 14 -
man/gen.simuProb.Rd | 10 +
man/gen.simuSample.Rd | 5
man/gen.simuSampleFreq.Rd | 5
man/gen.simuSet.Rd | 16 +
man/genea140.Rd | 5
man/geneaJi.Rd | 4
src/congen.cpp | 4
34 files changed, 420 insertions(+), 371 deletions(-)
Title: Format R Code Automatically
Diff between formatR versions 1.1 dated 2015-03-29 and 1.2 dated 2015-04-21
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 11 ++++++-----
MD5 | 14 +++++++-------
NEWS | 6 ++++++
R/tidy.R | 20 +++++++++-----------
R/utils.R | 31 ++-----------------------------
build/vignette.rds |binary
inst/doc/formatR.html | 7 +++----
tests/testit/test-tidy.R | 12 ++++++------
8 files changed, 39 insertions(+), 62 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Diff between evaluate versions 0.6 dated 2015-04-13 and 0.7 dated 2015-04-21
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [cre, ctb],
Barret Schloerke [ctb]
Maintainer: Yihui Xie
DESCRIPTION | 12 +++++-----
MD5 | 42 ++++++++++++++++++------------------
NEWS | 5 ++++
R/graphics.r | 19 +---------------
R/parse.r | 26 ++++++++++++++++------
R/replay.r | 1
R/watcher.r | 3 +-
man/line_prompt.Rd | 1
man/watchout.Rd | 1
tests/test-all.R | 3 --
tests/testthat/interleave-1.r | 2 -
tests/testthat/interleave-2.r | 2 -
tests/testthat/parse.r | 2 -
tests/testthat/plot-last-comment.r | 2 -
tests/testthat/plot-multi-layout.r | 2 -
tests/testthat/plot-multi-layout2.r | 2 -
tests/testthat/plot-par2.r | 4 +--
tests/testthat/plot-persp.r | 6 ++---
tests/testthat/plot-strwidth.r | 2 -
tests/testthat/test-evaluate.r | 8 ++++--
tests/testthat/test-graphics.r | 4 +--
tests/testthat/test-parse.r | 19 +++++++++++-----
22 files changed, 91 insertions(+), 77 deletions(-)
Title: Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Diff between blockmodels versions 1.0.4 dated 2015-04-15 and 1.1.1 dated 2015-04-21
Description: Latent and Stochastic Block Model estimation by a Variational EM algorithm.
Various probability distribution are provided (Bernoulli,
Poisson...), with or without covariates.
Author: INRA, Jean-Benoist Leger
Maintainer: Jean-Benoist Leger
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++++----
NAMESPACE | 2 ++
R/zbernoulli_multiplex.R |only
man/BM_bernoulli_multiplex.Rd |only
src/dispatcher.h | 5 +++++
src/misc_functions.h | 4 ++--
src/models/bernoulli_multiplex.h |only
tests/BM_bernoulli_multiplex.R |only
9 files changed, 22 insertions(+), 11 deletions(-)