Title: Distance Sampling Analyses
Diff between Rdistance versions 1.2.1 dated 2015-04-01 and 1.2.2 dated 2015-04-22
Description: Analysis of distance sampling data collected on line transect surveys. Estimates distance-based detection functions and abundances.
Author: Trent McDonald [cre, aut],
Ryan Nielson [aut],
Jason Carlisle [aut],
Ben Augustine [ctb],
James Griswald [ctb],
Joel Reynolds [ctb],
Pham Quang [ctb],
Earl Becker [ctb],
Aaron Christ [ctb],
Brook Russelland [ctb],
Patrick McKann [ctb]
Maintainer: Trent McDonald
Rdistance-1.2.1/Rdistance/data/sparrow.covs.rda |only
Rdistance-1.2.1/Rdistance/data/sparrow.dists.rda |only
Rdistance-1.2.1/Rdistance/man/sparrow.covs.Rd |only
Rdistance-1.2.1/Rdistance/man/sparrow.dists.Rd |only
Rdistance-1.2.1/Rdistance/vignettes/vignette.sparrow.example.R |only
Rdistance-1.2.2/Rdistance/DESCRIPTION | 12 -
Rdistance-1.2.2/Rdistance/MD5 | 46 ++-
Rdistance-1.2.2/Rdistance/R/F.abund.estim.r | 118 +---------
Rdistance-1.2.2/Rdistance/R/F.automated.CDA.r | 15 -
Rdistance-1.2.2/Rdistance/R/F.dfunc.estim.R | 11
Rdistance-1.2.2/Rdistance/R/perp.dists.R | 4
Rdistance-1.2.2/Rdistance/R/zzz.R | 2
Rdistance-1.2.2/Rdistance/build |only
Rdistance-1.2.2/Rdistance/data/sparrow.detections.rda |only
Rdistance-1.2.2/Rdistance/data/sparrow.transects.rda |only
Rdistance-1.2.2/Rdistance/inst |only
Rdistance-1.2.2/Rdistance/man/AIC.dfunc.Rd | 10
Rdistance-1.2.2/Rdistance/man/ESW.Rd | 10
Rdistance-1.2.2/Rdistance/man/F.abund.estim.Rd | 32 +-
Rdistance-1.2.2/Rdistance/man/F.automated.CDA.Rd | 18 -
Rdistance-1.2.2/Rdistance/man/F.dfunc.estim.Rd | 63 +----
Rdistance-1.2.2/Rdistance/man/Rdistance-package.Rd | 23 -
Rdistance-1.2.2/Rdistance/man/coef.dfunc.Rd | 10
Rdistance-1.2.2/Rdistance/man/perp.dists.Rd | 12 -
Rdistance-1.2.2/Rdistance/man/sparrow.detections.Rd |only
Rdistance-1.2.2/Rdistance/man/sparrow.transects.Rd |only
Rdistance-1.2.2/Rdistance/vignettes/Rdistance_BeginnerTutorial.Rmd |only
Rdistance-1.2.2/Rdistance/vignettes/Rdistance_CustomDetectionFunction.Rmd |only
28 files changed, 148 insertions(+), 238 deletions(-)
Title: Nested Association Mapping Analysis
Diff between NAM versions 1.2 dated 2015-04-07 and 1.3 dated 2015-04-22
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier
DESCRIPTION | 8
MD5 | 18 -
NAMESPACE | 3
R/gibbs.R | 16 -
R/gwas.R | 90 +++++
R/gwas2.R | 813 +++++++++++++++++++++++++++++------------------------
R/manhattan.R | 47 +--
man/NAM-package.Rd | 4
man/gibbs.Rd | 151 ++++-----
man/gwas.Rd | 7
10 files changed, 668 insertions(+), 489 deletions(-)
Title: Global Charcoal Database
Diff between GCD versions 3.0.4 dated 2014-05-22 and 3.0.5 dated 2015-04-22
Description: Contains the Global Charcoal database data. Data include charcoal
series (age, depth, charcoal quantity, associated units and methods) and
informations on sedimentary sites (localisation, depositional environment, biome, etc.).
Author: Global Paleofire Working Group
Maintainer: Olivier Blarquez
GCD-3.0.4/GCD/R/potveg.R |only
GCD-3.0.4/GCD/man/plot.potveg.Rd |only
GCD-3.0.4/GCD/man/potveg.Rd |only
GCD-3.0.5/GCD/DESCRIPTION | 15 +--
GCD-3.0.5/GCD/MD5 | 18 +--
GCD-3.0.5/GCD/NAMESPACE | 5 -
GCD-3.0.5/GCD/NEWS | 9 +
GCD-3.0.5/GCD/R/GCD-package.R |only
GCD-3.0.5/GCD/man/GCD-internal.Rd | 10 +-
GCD-3.0.5/GCD/man/GCD-package.Rd | 49 +++++-----
GCD-3.0.5/GCD/man/paleofiredata.Rd | 30 +++---
GCD-3.0.5/GCD/man/paleofiresites.Rd | 168 +++++++++++++++++++++---------------
12 files changed, 169 insertions(+), 135 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero/One Inflated
Beta Regression
Diff between zoib versions 1.2.1 dated 2015-03-26 and 1.3.0 dated 2015-04-22
Description: Fits beta regression and zero/one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu
Maintainer: Fang Liu
DESCRIPTION | 8 +++----
MD5 | 50 +++++++++++++++++++++++------------------------
R/fixed01.R | 2 -
R/zoib.R | 40 +++++++++++++++++++++++++++----------
inst/bugs/fixed.bug | 5 +---
inst/bugs/fixed0.bug | 4 +--
inst/bugs/fixed01.bug | 19 ++++++++++-------
inst/bugs/fixed1.bug | 6 ++---
inst/bugs/joint_1z.bug | 6 ++---
inst/bugs/joint_1z0.bug | 6 ++---
inst/bugs/joint_1z01.bug | 5 ++--
inst/bugs/joint_1z1.bug | 5 ++--
inst/bugs/joint_2z.bug | 5 ++--
inst/bugs/joint_2z0.bug | 5 ++--
inst/bugs/joint_2z01.bug | 5 ++--
inst/bugs/joint_2z1.bug | 5 ++--
inst/bugs/sep_1z.bug | 4 +--
inst/bugs/sep_1z0.bug | 4 +--
inst/bugs/sep_1z01.bug | 4 +--
inst/bugs/sep_1z1.bug | 5 ++--
inst/bugs/sep_2z.bug | 5 ++--
inst/bugs/sep_2z0.bug | 5 ++--
inst/bugs/sep_2z01.bug | 5 ++--
inst/bugs/sep_2z1.bug | 5 ++--
man/zoib-package.Rd | 6 ++---
man/zoib.Rd | 10 +++++----
26 files changed, 131 insertions(+), 98 deletions(-)
Title: Read and Analyze PLEXOS Solutions
Diff between rplexos versions 0.13 dated 2015-03-18 and 1.0 dated 2015-04-22
Description: Efficiently read and analyze PLEXOS solutions by converting them
into SQLite databases that can be easily queried. It supports collation of
solutions that may have been divided into different time partitions,
as well as the comparison across different scenarios.
Author: Eduardo Ibanez [aut, cre],
Marcin Kalicinski [ctb] (for the included RapidXml source),
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
DESCRIPTION | 20 -
MD5 | 69 +++---
NAMESPACE | 4
R/debug.R | 25 ++
R/process_folder.R | 8
R/process_input.R | 2
R/process_solution.R | 6
R/query.R | 34 +--
build/vignette.rds |binary
inst/doc/rplexos.R | 77 ++++++
inst/doc/rplexos.Rmd | 172 +++++++++++++--
inst/doc/rplexos.html | 439 ++++++++++++++++++---------------------
inst/extdata |only
man/get_query.Rd | 2
man/is_sample_stats.Rd | 2
man/list_folders.Rd | 2
man/location_solution_rplexos.Rd |only
man/plexos_open.Rd | 2
man/process_folder.Rd | 2
man/query_class_member.Rd | 2
man/query_config.Rd | 2
man/query_log.Rd | 2
man/query_master.Rd | 7
man/query_master_each.Rd | 4
man/query_phase.Rd | 2
man/query_property.Rd | 2
man/query_sql.Rd | 2
man/query_time.Rd | 2
man/rplexos.Rd | 2
man/start_debug_rplexos.Rd | 2
man/start_parallel_rplexos.Rd | 2
man/valid_columns.Rd | 2
src/RcppExports.cpp | 28 --
tests |only
vignettes/rplexos.Rmd | 170 +++++++++++++--
35 files changed, 712 insertions(+), 385 deletions(-)
More information about shinydashboard at CRAN
Permanent link
Title: Statistical Tools for Probing Moderation Effects
Diff between probemod versions 0.2 dated 2015-04-21 and 0.2.1 dated 2015-04-22
Description: Contains functions that are useful for probing moderation effects (or interactions) including techniques such as pick-a-point (also known as spotlight analysis) and Johnson-Neyman (also known as floodlight analysis). Plot function is also provided to facilitate visualization of results from each of these techniques.
Author: Jiat Chow Tan [aut, cre]
Maintainer: Jiat Chow Tan
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 11 +++++++----
R/jn.R | 20 +++++++++++---------
R/pickapoint.R | 19 +++++++++++--------
R/plot.jn.R | 4 ++--
man/plot.jn.Rd | 4 ++--
7 files changed, 43 insertions(+), 35 deletions(-)
Title: Analysis of Charcoal Records from the Global Charcoal Database
Diff between paleofire versions 1.1.5 dated 2014-12-01 and 1.1.6 dated 2015-04-22
Description: Tools to extract and analyse charcoal sedimentary data stored in
the Global Charcoal Database. Main functionalities includes data extraction
and sites selection, transformation and interpolation of the charcoal
records as well as compositing.
Author: Global Paleofire Working Group
Maintainer: Olivier Blarquez
paleofire-1.1.5/paleofire/man/1paleofiRe-package.Rd |only
paleofire-1.1.6/paleofire/DESCRIPTION | 17
paleofire-1.1.6/paleofire/MD5 | 126 +++----
paleofire-1.1.6/paleofire/NAMESPACE | 5
paleofire-1.1.6/paleofire/NEWS | 20 +
paleofire-1.1.6/paleofire/R/contiguous.R |only
paleofire-1.1.6/paleofire/R/kdffreq.R |only
paleofire-1.1.6/paleofire/R/paleofire-package.R |only
paleofire-1.1.6/paleofire/R/pfAddData.R | 56 +++
paleofire-1.1.6/paleofire/R/pfBoxCox.R | 35 +
paleofire-1.1.6/paleofire/R/pfCircular.R | 68 +++
paleofire-1.1.6/paleofire/R/pfComposite.R | 80 ++++
paleofire-1.1.6/paleofire/R/pfCompositeLF.R | 126 ++++++-
paleofire-1.1.6/paleofire/R/pfDiagnostic.R | 58 +++
paleofire-1.1.6/paleofire/R/pfDotMap.r | 282 ++++++++++++----
paleofire-1.1.6/paleofire/R/pfExtract.R | 28 +
paleofire-1.1.6/paleofire/R/pfGridding.R | 205 ++++++++++-
paleofire-1.1.6/paleofire/R/pfInteractive.R | 33 +
paleofire-1.1.6/paleofire/R/pfKruskal.R | 83 ++++
paleofire-1.1.6/paleofire/R/pfMinMax.R | 31 +
paleofire-1.1.6/paleofire/R/pfPublication.R | 3
paleofire-1.1.6/paleofire/R/pfResolution.R | 23 +
paleofire-1.1.6/paleofire/R/pfSimpleGrid.r |only
paleofire-1.1.6/paleofire/R/pfSiteSel.R | 133 +++++++
paleofire-1.1.6/paleofire/R/pfToKml.R | 20 +
paleofire-1.1.6/paleofire/R/pfTransform.R | 69 +++
paleofire-1.1.6/paleofire/R/potveg.R |only
paleofire-1.1.6/paleofire/R/pretreatment.R | 72 ++++
paleofire-1.1.6/paleofire/R/zzz.R | 48 ++
paleofire-1.1.6/paleofire/build/vignette.rds |binary
paleofire-1.1.6/paleofire/data/countries.rda |only
paleofire-1.1.6/paleofire/data/datalist | 1
paleofire-1.1.6/paleofire/inst/doc/paleofire-paper.Rnw | 1
paleofire-1.1.6/paleofire/inst/doc/paleofire-paper.pdf |binary
paleofire-1.1.6/paleofire/man/checkGCDversion.Rd | 28 -
paleofire-1.1.6/paleofire/man/contiguous.Rd |only
paleofire-1.1.6/paleofire/man/kdffreq.Rd |only
paleofire-1.1.6/paleofire/man/paleofire-internal.Rd | 14
paleofire-1.1.6/paleofire/man/paleofire-package.Rd |only
paleofire-1.1.6/paleofire/man/pfAddData.Rd | 75 ++--
paleofire-1.1.6/paleofire/man/pfBoxCox.Rd | 55 +--
paleofire-1.1.6/paleofire/man/pfCircular.Rd | 65 +--
paleofire-1.1.6/paleofire/man/pfComposite.Rd | 77 ++--
paleofire-1.1.6/paleofire/man/pfCompositeLF.Rd | 106 +++---
paleofire-1.1.6/paleofire/man/pfDiagnostic.Rd | 131 +++----
paleofire-1.1.6/paleofire/man/pfDotMap.Rd | 209 +++++++----
paleofire-1.1.6/paleofire/man/pfExtract.Rd | 32 -
paleofire-1.1.6/paleofire/man/pfGridding.Rd | 127 ++++---
paleofire-1.1.6/paleofire/man/pfInteractive.Rd | 34 -
paleofire-1.1.6/paleofire/man/pfKruskal.Rd | 51 +-
paleofire-1.1.6/paleofire/man/pfMinMax.Rd | 30 -
paleofire-1.1.6/paleofire/man/pfPublication.Rd | 2
paleofire-1.1.6/paleofire/man/pfResolution.Rd | 42 --
paleofire-1.1.6/paleofire/man/pfSimpleGrid.Rd |only
paleofire-1.1.6/paleofire/man/pfSiteSel.Rd | 56 +--
paleofire-1.1.6/paleofire/man/pfToKml.Rd | 33 -
paleofire-1.1.6/paleofire/man/pfTransform.Rd | 131 +++----
paleofire-1.1.6/paleofire/man/plot.CHAR.Rd | 34 -
paleofire-1.1.6/paleofire/man/plot.contiguous.Rd |only
paleofire-1.1.6/paleofire/man/plot.kdffreq.Rd |only
paleofire-1.1.6/paleofire/man/plot.pfCircular.Rd | 52 +-
paleofire-1.1.6/paleofire/man/plot.pfComposite.Rd | 54 +--
paleofire-1.1.6/paleofire/man/plot.pfCompositeLF.Rd | 68 ++-
paleofire-1.1.6/paleofire/man/plot.pfGridding.Rd | 102 +++--
paleofire-1.1.6/paleofire/man/plot.pfKruskal.Rd | 62 +--
paleofire-1.1.6/paleofire/man/plot.pfSiteSel.Rd | 59 +--
paleofire-1.1.6/paleofire/man/plot.potveg.Rd |only
paleofire-1.1.6/paleofire/man/potveg.Rd |only
paleofire-1.1.6/paleofire/man/pretreatment.Rd | 67 +--
paleofire-1.1.6/paleofire/man/summary.pfSiteSel.Rd | 35 -
paleofire-1.1.6/paleofire/man/triCube.Rd |only
paleofire-1.1.6/paleofire/vignettes/paleofire-paper.Rnw | 1
72 files changed, 2421 insertions(+), 1034 deletions(-)
Title: 'Markdown' Rendering for R
Diff between markdown versions 0.7.4 dated 2014-08-24 and 0.7.7 dated 2015-04-22
Description: Provides R bindings to the 'Sundown' 'Markdown' rendering library
(https://github.com/vmg/sundown). 'Markdown' is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
http://en.wikipedia.org/wiki/Markdown for more information about 'Markdown'.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie
DESCRIPTION | 19 +++++++------
MD5 | 44 ++++++++++++++++----------------
NEWS | 19 +++++++++++++
R/renderMarkdown.R | 55 +++++++++++++++++++++-------------------
R/rpubsUpload.R | 55 ++++++++++++++++++++++++++++++++--------
README.md | 2 +
build/vignette.rds |binary
inst/doc/markdown-examples.R | 4 +-
inst/doc/markdown-examples.html | 8 ++---
inst/doc/markdown-output.R | 4 +-
inst/doc/markdown-output.html | 8 ++---
inst/examples/HTMLOptions.R | 4 +-
man/markdown.Rd | 1
man/markdownExtensions.Rd | 1
man/markdownHTMLOptions.Rd | 1
man/markdownToHTML.Rd | 1
man/registeredRenderers.Rd | 1
man/renderMarkdown.Rd | 29 ++++++++++++---------
man/rendererExists.Rd | 1
man/rendererOutputType.Rd | 1
man/rpubsUpload.Rd | 1
man/smartypants.Rd | 1
tests/tests.Rout.save | 12 ++++----
23 files changed, 172 insertions(+), 100 deletions(-)
Title: Geographic Display of Survey Data Statistics
Diff between mapStats versions 2.3 dated 2015-02-19 and 2.4 dated 2015-04-22
Description: Automated calculation and visualization of survey data statistics on a color-coded map.
Author: Samuel Ackerman
Maintainer: Samuel Ackerman
DESCRIPTION | 8 +++---
MD5 | 21 +++++++++--------
R/calcStats.R | 32 ++++++++++++++++++++++++++-
R/jiggleClass.R | 44 +++++++++++++++++++++++++------------
R/mapStats.R | 4 +--
R/nobsEach.R |only
R/plotStats.R | 55 +++++++++++++++++++++++++++++++++++------------
demo/map_examples.R | 32 +++++++++++++++------------
man/jiggleClass.Rd | 43 ++++++++++++++++++++++++++++++------
man/mapStats-internal.Rd | 9 ++++++-
man/mapStats-package.Rd | 2 -
man/mapStats.Rd | 4 ++-
12 files changed, 186 insertions(+), 68 deletions(-)
Title: Karl Broman's R Code
Diff between broman versions 0.48-2 dated 2014-05-07 and 0.55-2 dated 2015-04-22
Description: Miscellaneous R functions.
Author: Karl W Broman
Maintainer: Karl W Broman
broman-0.48-2/broman/R/get.R |only
broman-0.48-2/broman/R/loadwork.R |only
broman-0.48-2/broman/inst/tests |only
broman-0.48-2/broman/man/attachwork.Rd |only
broman-0.48-2/broman/man/get0.Rd |only
broman-0.48-2/broman/man/loadwork.Rd |only
broman-0.48-2/broman/tests/run-all.R |only
broman-0.55-2/broman/DESCRIPTION | 19 -
broman-0.55-2/broman/MD5 | 189 ++++++-----
broman-0.55-2/broman/NAMESPACE | 20 -
broman-0.55-2/broman/R/arrowlocator.R | 25 -
broman-0.55-2/broman/R/attrnames.R |only
broman-0.55-2/broman/R/brocolors.R | 433 +++++++++++++-------------
broman-0.55-2/broman/R/cf.R | 14
broman-0.55-2/broman/R/colwalpha.R |only
broman-0.55-2/broman/R/convert2hex.R | 55 ---
broman-0.55-2/broman/R/errors2pushbullet.R |only
broman-0.55-2/broman/R/exit.R |only
broman-0.55-2/broman/R/fisher.R | 46 +-
broman-0.55-2/broman/R/grayplot.R | 231 +++++++------
broman-0.55-2/broman/R/help.R | 7
broman-0.55-2/broman/R/histlines.R | 30 -
broman-0.55-2/broman/R/holmans_triangle.R | 272 +++++++---------
broman-0.55-2/broman/R/kbdate.R | 16
broman-0.55-2/broman/R/lenuniq.R |only
broman-0.55-2/broman/R/loadfile.R |only
broman-0.55-2/broman/R/make.R | 28 +
broman-0.55-2/broman/R/manyboxplot.R | 85 ++---
broman-0.55-2/broman/R/mypairs.R | 37 +-
broman-0.55-2/broman/R/myround.R | 29 -
broman-0.55-2/broman/R/normalize.R | 41 +-
broman-0.55-2/broman/R/note.R |only
broman-0.55-2/broman/R/objectsizes.R | 19 -
broman-0.55-2/broman/R/pastedot.R | 18 -
broman-0.55-2/broman/R/permtest.R | 124 +++----
broman-0.55-2/broman/R/qr.R | 23 -
broman-0.55-2/broman/R/quantileSE.R | 25 -
broman-0.55-2/broman/R/revrainbow.R | 9
broman-0.55-2/broman/R/rmvn.R | 15
broman-0.55-2/broman/R/runningmean.R | 160 ++++-----
broman-0.55-2/broman/R/simp.R | 53 +--
broman-0.55-2/broman/R/strwidth2lines.R | 6
broman-0.55-2/broman/R/strwidth2xlim.R | 22 -
broman-0.55-2/broman/R/theme_karl.R |only
broman-0.55-2/broman/R/util.R | 11
broman-0.55-2/broman/R/venn_diagram.R | 302 ++++++++----------
broman-0.55-2/broman/R/winsorize.R | 19 -
broman-0.55-2/broman/R/xlimlabel.R | 24 -
broman-0.55-2/broman/README.md |only
broman-0.55-2/broman/inst/README.md |only
broman-0.55-2/broman/inst/STATUS.txt | 86 ++++-
broman-0.55-2/broman/man/arrowlocator.Rd | 6
broman-0.55-2/broman/man/attachfile.Rd | 16
broman-0.55-2/broman/man/attrnames.Rd |only
broman-0.55-2/broman/man/brocolors.Rd | 6
broman-0.55-2/broman/man/bromanversion.Rd | 6
broman-0.55-2/broman/man/cf.Rd | 6
broman-0.55-2/broman/man/chisq.Rd | 6
broman-0.55-2/broman/man/colwalpha.Rd |only
broman-0.55-2/broman/man/convert2hex.Rd | 6
broman-0.55-2/broman/man/done.Rd |only
broman-0.55-2/broman/man/errors2pushbullet.Rd |only
broman-0.55-2/broman/man/exit.Rd |only
broman-0.55-2/broman/man/fisher.Rd | 6
broman-0.55-2/broman/man/grayplot.Rd | 16
broman-0.55-2/broman/man/h.Rd | 6
broman-0.55-2/broman/man/hex2dec.Rd | 3
broman-0.55-2/broman/man/histlines.Rd | 6
broman-0.55-2/broman/man/kbdate.Rd | 6
broman-0.55-2/broman/man/lenuniq.Rd |only
broman-0.55-2/broman/man/loadfile.Rd | 16
broman-0.55-2/broman/man/make.Rd | 16
broman-0.55-2/broman/man/manyboxplot.Rd | 6
broman-0.55-2/broman/man/mypairs.Rd | 6
broman-0.55-2/broman/man/myround.Rd | 6
broman-0.55-2/broman/man/normalize.Rd | 6
broman-0.55-2/broman/man/note.Rd |only
broman-0.55-2/broman/man/objectsizes.Rd | 6
broman-0.55-2/broman/man/paired.perm.test.Rd | 6
broman-0.55-2/broman/man/paste..Rd | 6
broman-0.55-2/broman/man/paste00.Rd | 6
broman-0.55-2/broman/man/perm.test.Rd | 6
broman-0.55-2/broman/man/plot_crayons.Rd | 21 -
broman-0.55-2/broman/man/qqline2.Rd | 3
broman-0.55-2/broman/man/qr2.Rd | 6
broman-0.55-2/broman/man/quantileSE.Rd | 6
broman-0.55-2/broman/man/revrainbow.Rd | 6
broman-0.55-2/broman/man/rmvn.Rd | 6
broman-0.55-2/broman/man/runningmean.Rd | 3
broman-0.55-2/broman/man/runningratio.Rd | 3
broman-0.55-2/broman/man/simp.Rd | 6
broman-0.55-2/broman/man/strwidth2lines.Rd | 3
broman-0.55-2/broman/man/strwidth2xlim.Rd | 3
broman-0.55-2/broman/man/theme_karl.Rd |only
broman-0.55-2/broman/man/triarrow.Rd | 6
broman-0.55-2/broman/man/trilines.Rd | 6
broman-0.55-2/broman/man/triplot.Rd | 6
broman-0.55-2/broman/man/tripoints.Rd | 6
broman-0.55-2/broman/man/venn.Rd | 6
broman-0.55-2/broman/man/winsorize.Rd | 6
broman-0.55-2/broman/man/xlimlabel.Rd | 3
broman-0.55-2/broman/src/normalize.c | 134 ++++----
broman-0.55-2/broman/src/runningmean.c | 148 ++++----
broman-0.55-2/broman/tests/testthat |only
broman-0.55-2/broman/tests/testthat.R |only
105 files changed, 1514 insertions(+), 1547 deletions(-)
Title: Data Visualization for Statistics in Social Science
Diff between sjPlot versions 1.7 dated 2015-03-11 and 1.8 dated 2015-04-22
Description: Collection of several plotting and table output functions for visualizing data.
Author: Daniel Lüdecke
Maintainer: Daniel Lüdecke
sjPlot-1.7/sjPlot/R/efc.R |only
sjPlot-1.7/sjPlot/R/sjImportSPSS.R |only
sjPlot-1.7/sjPlot/R/sjRecode.R |only
sjPlot-1.7/sjPlot/R/sjStatistics.R |only
sjPlot-1.7/sjPlot/data |only
sjPlot-1.7/sjPlot/man/chisq_gof.Rd |only
sjPlot-1.7/sjPlot/man/cramer.Rd |only
sjPlot-1.7/sjPlot/man/cronb.Rd |only
sjPlot-1.7/sjPlot/man/dicho.Rd |only
sjPlot-1.7/sjPlot/man/efc.Rd |only
sjPlot-1.7/sjPlot/man/efc2.Rd |only
sjPlot-1.7/sjPlot/man/efc3.Rd |only
sjPlot-1.7/sjPlot/man/eta_sq.Rd |only
sjPlot-1.7/sjPlot/man/get_val_labels.Rd |only
sjPlot-1.7/sjPlot/man/get_var_labels.Rd |only
sjPlot-1.7/sjPlot/man/group_labels.Rd |only
sjPlot-1.7/sjPlot/man/group_str.Rd |only
sjPlot-1.7/sjPlot/man/group_var.Rd |only
sjPlot-1.7/sjPlot/man/levene_test.Rd |only
sjPlot-1.7/sjPlot/man/mean_n.Rd |only
sjPlot-1.7/sjPlot/man/mic.Rd |only
sjPlot-1.7/sjPlot/man/mwu.Rd |only
sjPlot-1.7/sjPlot/man/phi.Rd |only
sjPlot-1.7/sjPlot/man/read_sas.Rd |only
sjPlot-1.7/sjPlot/man/read_spss.Rd |only
sjPlot-1.7/sjPlot/man/read_stata.Rd |only
sjPlot-1.7/sjPlot/man/recode_to.Rd |only
sjPlot-1.7/sjPlot/man/reliab_test.Rd |only
sjPlot-1.7/sjPlot/man/set_na.Rd |only
sjPlot-1.7/sjPlot/man/set_val_labels.Rd |only
sjPlot-1.7/sjPlot/man/set_var_labels.Rd |only
sjPlot-1.7/sjPlot/man/std_beta.Rd |only
sjPlot-1.7/sjPlot/man/std_e.Rd |only
sjPlot-1.7/sjPlot/man/str_pos.Rd |only
sjPlot-1.7/sjPlot/man/table_values.Rd |only
sjPlot-1.7/sjPlot/man/to_fac.Rd |only
sjPlot-1.7/sjPlot/man/to_label.Rd |only
sjPlot-1.7/sjPlot/man/to_sjPlot.Rd |only
sjPlot-1.7/sjPlot/man/to_value.Rd |only
sjPlot-1.7/sjPlot/man/weight.Rd |only
sjPlot-1.7/sjPlot/man/weight2.Rd |only
sjPlot-1.7/sjPlot/man/word_wrap.Rd |only
sjPlot-1.7/sjPlot/man/write_spss.Rd |only
sjPlot-1.7/sjPlot/man/write_stata.Rd |only
sjPlot-1.8/sjPlot/DESCRIPTION | 20
sjPlot-1.8/sjPlot/MD5 | 214 -
sjPlot-1.8/sjPlot/NAMESPACE | 43
sjPlot-1.8/sjPlot/NEWS | 48
sjPlot-1.8/sjPlot/R/helpfunctions.R | 1373 +++++-----
sjPlot-1.8/sjPlot/R/sjPlotAncovaLSMeans.R | 1025 +++++---
sjPlot-1.8/sjPlot/R/sjPlotAnova.R | 1046 ++++----
sjPlot-1.8/sjPlot/R/sjPlotClusterAnalysis.R | 1786 ++++++--------
sjPlot-1.8/sjPlot/R/sjPlotCorr.R | 37
sjPlot-1.8/sjPlot/R/sjPlotDist.R | 1088 ++++----
sjPlot-1.8/sjPlot/R/sjPlotFrequencies.R | 465 +--
sjPlot-1.8/sjPlot/R/sjPlotGLME.R | 3393 ++++++++++++++-------------
sjPlot-1.8/sjPlot/R/sjPlotGroupFrequencies.R | 2449 +++++++++----------
sjPlot-1.8/sjPlot/R/sjPlotInteractions.R | 1261 +++++++---
sjPlot-1.8/sjPlot/R/sjPlotLikert.R | 169 -
sjPlot-1.8/sjPlot/R/sjPlotLinreg.R | 1836 +++++++-------
sjPlot-1.8/sjPlot/R/sjPlotLinregMultiple.R | 808 +++---
sjPlot-1.8/sjPlot/R/sjPlotOdds.R | 299 +-
sjPlot-1.8/sjPlot/R/sjPlotOddsMultiple.R | 190 -
sjPlot-1.8/sjPlot/R/sjPlotPCA.R | 206 +
sjPlot-1.8/sjPlot/R/sjPlotPearsonsChi2Test.R | 295 +-
sjPlot-1.8/sjPlot/R/sjPlotPropTable.R | 434 +--
sjPlot-1.8/sjPlot/R/sjPlotScatter.R | 660 ++---
sjPlot-1.8/sjPlot/R/sjPlotSetTheme.R | 1615 ++++++------
sjPlot-1.8/sjPlot/R/sjPlotStackFrequencies.R | 260 +-
sjPlot-1.8/sjPlot/R/sjTabCorr.R | 1069 ++++----
sjPlot-1.8/sjPlot/R/sjTabDataFrame.R | 179 -
sjPlot-1.8/sjPlot/R/sjTabFrequencies.R | 103
sjPlot-1.8/sjPlot/R/sjTabGrpmean.R | 42
sjPlot-1.8/sjPlot/R/sjTabItemAnalysis.R | 110
sjPlot-1.8/sjPlot/R/sjTabLinReg.R | 312 +-
sjPlot-1.8/sjPlot/R/sjTabMannWhitney.R |only
sjPlot-1.8/sjPlot/R/sjTabOdds.R | 155 -
sjPlot-1.8/sjPlot/R/sjTabPCA.R | 99
sjPlot-1.8/sjPlot/R/sjTabPropTable.R | 291 --
sjPlot-1.8/sjPlot/R/sjTabSPSS.R | 84
sjPlot-1.8/sjPlot/R/sjTabStackFrq.R | 237 +
sjPlot-1.8/sjPlot/R/zzz.R |only
sjPlot-1.8/sjPlot/README.md | 75
sjPlot-1.8/sjPlot/man/adjust_plot_range.Rd | 5
sjPlot-1.8/sjPlot/man/dist_chisq.Rd | 2
sjPlot-1.8/sjPlot/man/dist_f.Rd | 2
sjPlot-1.8/sjPlot/man/dist_norm.Rd | 2
sjPlot-1.8/sjPlot/man/dist_t.Rd | 2
sjPlot-1.8/sjPlot/man/sj.setGeomColors.Rd | 2
sjPlot-1.8/sjPlot/man/sjPlot-package.Rd | 26
sjPlot-1.8/sjPlot/man/sjc.cluster.Rd | 12
sjPlot-1.8/sjPlot/man/sjc.dend.Rd | 7
sjPlot-1.8/sjPlot/man/sjc.elbow.Rd | 8
sjPlot-1.8/sjPlot/man/sjc.grpdisc.Rd | 7
sjPlot-1.8/sjPlot/man/sjc.kgap.Rd | 2
sjPlot-1.8/sjPlot/man/sjc.qclus.Rd | 12
sjPlot-1.8/sjPlot/man/sjp.aov1.Rd | 14
sjPlot-1.8/sjPlot/man/sjp.chi2.Rd | 4
sjPlot-1.8/sjPlot/man/sjp.corr.Rd | 5
sjPlot-1.8/sjPlot/man/sjp.emm.int.Rd | 106
sjPlot-1.8/sjPlot/man/sjp.frq.Rd | 19
sjPlot-1.8/sjPlot/man/sjp.glm.Rd | 21
sjPlot-1.8/sjPlot/man/sjp.glmer.Rd | 428 +--
sjPlot-1.8/sjPlot/man/sjp.glmm.Rd | 54
sjPlot-1.8/sjPlot/man/sjp.grpfrq.Rd | 23
sjPlot-1.8/sjPlot/man/sjp.int.Rd | 268 +-
sjPlot-1.8/sjPlot/man/sjp.likert.Rd | 69
sjPlot-1.8/sjPlot/man/sjp.lm.Rd | 23
sjPlot-1.8/sjPlot/man/sjp.lmer.Rd | 395 +--
sjPlot-1.8/sjPlot/man/sjp.lmm.Rd | 53
sjPlot-1.8/sjPlot/man/sjp.pca.Rd | 82
sjPlot-1.8/sjPlot/man/sjp.scatter.Rd | 13
sjPlot-1.8/sjPlot/man/sjp.setTheme.Rd | 26
sjPlot-1.8/sjPlot/man/sjp.stackfrq.Rd | 77
sjPlot-1.8/sjPlot/man/sjp.xtab.Rd | 73
sjPlot-1.8/sjPlot/man/sjt.corr.Rd | 377 +--
sjPlot-1.8/sjPlot/man/sjt.df.Rd | 309 +-
sjPlot-1.8/sjPlot/man/sjt.frq.Rd | 453 +--
sjPlot-1.8/sjPlot/man/sjt.glm.Rd | 673 ++---
sjPlot-1.8/sjPlot/man/sjt.grpmean.Rd | 7
sjPlot-1.8/sjPlot/man/sjt.itemanalysis.Rd | 396 +--
sjPlot-1.8/sjPlot/man/sjt.lm.Rd | 827 +++---
sjPlot-1.8/sjPlot/man/sjt.mwu.Rd |only
sjPlot-1.8/sjPlot/man/sjt.pca.Rd | 396 +--
sjPlot-1.8/sjPlot/man/sjt.stackfrq.Rd | 430 +--
sjPlot-1.8/sjPlot/man/sjt.xtab.Rd | 461 +--
sjPlot-1.8/sjPlot/man/view_spss.Rd | 255 +-
sjPlot-1.8/sjPlot/tests |only
128 files changed, 15652 insertions(+), 14550 deletions(-)
Title: Analytical Tools for Radiation Oncology
Diff between RadOnc versions 1.0.9 dated 2014-11-21 and 1.1.0 dated 2015-04-22
Description: Designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology, the tools herein enable import of dose-volume histogram information from Varian's 'Eclipse' platform and 3D structural representations and dosimetric information from 'DICOM-RT' files. These tools also enable subsequent visualization and statistical analysis of these data.
Author: Reid F. Thompson
Maintainer: Reid F. Thompson
RadOnc-1.0.9/RadOnc/R/getStructureList.R |only
RadOnc-1.0.9/RadOnc/build |only
RadOnc-1.0.9/RadOnc/inst/doc/RadOnc.R |only
RadOnc-1.0.9/RadOnc/inst/doc/RadOnc.Rnw |only
RadOnc-1.0.9/RadOnc/man/getStructureList.Rd |only
RadOnc-1.1.0/RadOnc/DESCRIPTION | 12 -
RadOnc-1.1.0/RadOnc/MD5 | 39 ++----
RadOnc-1.1.0/RadOnc/NAMESPACE | 2
RadOnc-1.1.0/RadOnc/R/CLASSES.R | 2
RadOnc-1.1.0/RadOnc/R/DVH.R | 40 +++++-
RadOnc-1.1.0/RadOnc/R/convert.DVH.R | 72 +++++++----
RadOnc-1.1.0/RadOnc/R/mean.DVH.R | 28 ----
RadOnc-1.1.0/RadOnc/R/plot.DVH.R | 18 +-
RadOnc-1.1.0/RadOnc/R/read.DICOM.RT.R | 3
RadOnc-1.1.0/RadOnc/R/read.DVH.R | 166 ++++++++++++++++++++-------
RadOnc-1.1.0/RadOnc/R/subset.R |only
RadOnc-1.1.0/RadOnc/inst/NEWS.Rd | 46 +++++++
RadOnc-1.1.0/RadOnc/inst/doc/RadOnc.pdf |binary
RadOnc-1.1.0/RadOnc/man/DVH-class.Rd | 2
RadOnc-1.1.0/RadOnc/man/DVH.list-class.Rd | 4
RadOnc-1.1.0/RadOnc/man/plot-methods.Rd | 5
RadOnc-1.1.0/RadOnc/man/structure3D-class.Rd | 7 -
RadOnc-1.1.0/RadOnc/man/subset.Rd |only
RadOnc-1.1.0/RadOnc/vignettes/RadOnc.Rnw | 35 +++--
24 files changed, 328 insertions(+), 153 deletions(-)
Title: Management, Display, and Processing of Medical Imaging Data
Diff between MRIaggr versions 1.0 dated 2015-03-10 and 1.1 dated 2015-04-22
Description: Provide a compact storage for medical imaging data with access and display possibilities. Basic tools for processing brain imaging data are proposed like extraction of brain voxels, morphological image segmentation, and filtering / normalization of contrast parameters. Specific tools are also provided for blood perfusion imaging to calculate hypoperfusion and reperfusion volumes.
Author: Brice Ozenne
Maintainer: Brice Ozenne
MRIaggr-1.0/MRIaggr/man/calcCriteriaGR.Rd |only
MRIaggr-1.0/MRIaggr/man/calcRegionalIntensity.Rd |only
MRIaggr-1.0/MRIaggr/man/calcSigmaGR.Rd |only
MRIaggr-1.0/MRIaggr/man/constSweave.Rd |only
MRIaggr-1.1/MRIaggr/DESCRIPTION | 13
MRIaggr-1.1/MRIaggr/MD5 | 141 +-
MRIaggr-1.1/MRIaggr/NAMESPACE | 14
MRIaggr-1.1/MRIaggr/R/Associated_functions.R | 1161 +++++++++--------
MRIaggr-1.1/MRIaggr/R/Class_Carto3D.R | 63
MRIaggr-1.1/MRIaggr/R/Class_MRIaggr.R | 963 ++++++++------
MRIaggr-1.1/MRIaggr/R/GR_functions.R | 440 +++---
MRIaggr-1.1/MRIaggr/R/Generic_functions.R | 23
MRIaggr-1.1/MRIaggr/R/RcppExports.R | 4
MRIaggr-1.1/MRIaggr/data/MRIaggr.Pat1_red.RData |binary
MRIaggr-1.1/MRIaggr/demo/Analysis.R | 6
MRIaggr-1.1/MRIaggr/demo/preProcessing.R | 13
MRIaggr-1.1/MRIaggr/inst/List_of_arguments.R | 804 ++++++-----
MRIaggr-1.1/MRIaggr/inst/NEWS |only
MRIaggr-1.1/MRIaggr/inst/TODO |only
MRIaggr-1.1/MRIaggr/inst/Tests/Test2-1_IRMaggr.R | 30
MRIaggr-1.1/MRIaggr/inst/Tests/Test2-3_fctsAssociees.R | 39
MRIaggr-1.1/MRIaggr/inst/Tests/Test2-4_fctsGR.R | 14
MRIaggr-1.1/MRIaggr/inst/calcCriteriaGR.Rd |only
MRIaggr-1.1/MRIaggr/inst/calcSigmaGR.Rd |only
MRIaggr-1.1/MRIaggr/man/Carto3D-class.Rd | 26
MRIaggr-1.1/MRIaggr/man/Carto3D2MRIaggr.Rd | 11
MRIaggr-1.1/MRIaggr/man/EDK.Rd | 6
MRIaggr-1.1/MRIaggr/man/MRIaggr-class.Rd | 61
MRIaggr-1.1/MRIaggr/man/affectContrast.Rd | 8
MRIaggr-1.1/MRIaggr/man/affectDescStats.Rd | 3
MRIaggr-1.1/MRIaggr/man/affectHemisphere.Rd | 6
MRIaggr-1.1/MRIaggr/man/array2df.Rd | 4
MRIaggr-1.1/MRIaggr/man/calcAUPRC.Rd | 3
MRIaggr-1.1/MRIaggr/man/calcBrainMask.Rd | 6
MRIaggr-1.1/MRIaggr/man/calcDistMask.Rd | 5
MRIaggr-1.1/MRIaggr/man/calcFilter.Rd | 19
MRIaggr-1.1/MRIaggr/man/calcGR.Rd | 5
MRIaggr-1.1/MRIaggr/man/calcGroupsMask.Rd | 13
MRIaggr-1.1/MRIaggr/man/calcGroupsW.Rd | 4
MRIaggr-1.1/MRIaggr/man/calcHemi_cpp.Rd | 17
MRIaggr-1.1/MRIaggr/man/calcHemisphere.Rd | 7
MRIaggr-1.1/MRIaggr/man/calcROCthreshold.Rd | 3
MRIaggr-1.1/MRIaggr/man/calcRegionaContrast.Rd |only
MRIaggr-1.1/MRIaggr/man/calcSmoothMask.Rd | 4
MRIaggr-1.1/MRIaggr/man/calcTableHypoReperf.Rd | 2
MRIaggr-1.1/MRIaggr/man/calcThresholdMRIaggr.Rd | 16
MRIaggr-1.1/MRIaggr/man/calcTissueType.Rd | 13
MRIaggr-1.1/MRIaggr/man/calcW.Rd | 18
MRIaggr-1.1/MRIaggr/man/constCarto3D.Rd | 7
MRIaggr-1.1/MRIaggr/man/constCompressMRIaggr.Rd | 2
MRIaggr-1.1/MRIaggr/man/constLatex.Rd |only
MRIaggr-1.1/MRIaggr/man/constMRIaggr.Rd | 51
MRIaggr-1.1/MRIaggr/man/constReduceMRIaggr.Rd | 4
MRIaggr-1.1/MRIaggr/man/df2array.Rd | 15
MRIaggr-1.1/MRIaggr/man/heatmapMRIaggr.Rd | 3
MRIaggr-1.1/MRIaggr/man/initConstLatex.Rd |only
MRIaggr-1.1/MRIaggr/man/initFilter.Rd | 2
MRIaggr-1.1/MRIaggr/man/initMask.Rd |only
MRIaggr-1.1/MRIaggr/man/initParameter.Rd | 2
MRIaggr-1.1/MRIaggr/man/multiplot.Rd | 10
MRIaggr-1.1/MRIaggr/man/outline.Rd | 2
MRIaggr-1.1/MRIaggr/man/outlineMRIaggr.Rd | 2
MRIaggr-1.1/MRIaggr/man/readMRI.Rd | 43
MRIaggr-1.1/MRIaggr/man/selectContrast.Rd | 15
MRIaggr-1.1/MRIaggr/man/selectCoords.Rd | 11
MRIaggr-1.1/MRIaggr/man/selectDefault_value.Rd | 4
MRIaggr-1.1/MRIaggr/man/selectDescStats.Rd | 5
MRIaggr-1.1/MRIaggr/man/selectHemispheres.Rd | 4
MRIaggr-1.1/MRIaggr/man/selectHistory.Rd | 2
MRIaggr-1.1/MRIaggr/man/selectIdentifier.Rd | 4
MRIaggr-1.1/MRIaggr/man/selectN.Rd | 3
MRIaggr-1.1/MRIaggr/man/selectParameter.Rd | 4
MRIaggr-1.1/MRIaggr/man/selectVoxelDim.Rd | 4
MRIaggr-1.1/MRIaggr/man/summary.MRIaggr.Rd | 8
MRIaggr-1.1/MRIaggr/man/writeMRI.Rd |only
MRIaggr-1.1/MRIaggr/man/writeMRIaggr.Rd |only
MRIaggr-1.1/MRIaggr/src/Associated_functions.cpp | 172 +-
MRIaggr-1.1/MRIaggr/src/RcppExports.cpp | 19
MRIaggr-1.1/MRIaggr/tests |only
79 files changed, 2444 insertions(+), 1942 deletions(-)
Title: Estimation of Conditional Quantiles using Optimal Quantization
Diff between QuantifQuantile versions 1.0 dated 2014-08-28 and 2.0 dated 2015-04-22
More information about QuantifQuantile at CRAN
Description: Estimation of conditional quantiles using optimal quantization.
Construction of an optimal grid of N quantizers, estimation of conditional
quantiles and data driven selection of the size N of the grid. Graphical
illustrations for the selection of N and of resulting estimated curves or
surfaces when the dimension of the covariate is one or two.
Author: Isabelle Charlier and Davy Paindaveine and Jerome Saracco
Maintainer: Isabelle Charlier
QuantifQuantile-1.0/QuantifQuantile/R/plot.select.N.QuantifQuantile.R |only
QuantifQuantile-1.0/QuantifQuantile/man/plot.select.N.QuantifQuantile.Rd |only
QuantifQuantile-2.0/QuantifQuantile/DESCRIPTION | 12
QuantifQuantile-2.0/QuantifQuantile/MD5 | 30 -
QuantifQuantile-2.0/QuantifQuantile/NAMESPACE | 5
QuantifQuantile-2.0/QuantifQuantile/R/QuantifQuantile.R | 43 +-
QuantifQuantile-2.0/QuantifQuantile/R/QuantifQuantile.d.R | 39 +-
QuantifQuantile-2.0/QuantifQuantile/R/QuantifQuantile.d2.R | 36 +-
QuantifQuantile-2.0/QuantifQuantile/R/plot.QuantifQuantile.R | 165 +++++++---
QuantifQuantile-2.0/QuantifQuantile/R/print.QuantifQuantile.R | 50 +--
QuantifQuantile-2.0/QuantifQuantile/R/summary.QuantifQuantile.R | 8
QuantifQuantile-2.0/QuantifQuantile/man/QuantifQuantile.Rd | 22 -
QuantifQuantile-2.0/QuantifQuantile/man/QuantifQuantile.d.Rd | 19 -
QuantifQuantile-2.0/QuantifQuantile/man/QuantifQuantile.d2.Rd | 19 -
QuantifQuantile-2.0/QuantifQuantile/man/plot.QuantifQuantile.Rd | 37 +-
QuantifQuantile-2.0/QuantifQuantile/man/print.QuantifQuantile.Rd | 4
QuantifQuantile-2.0/QuantifQuantile/man/summary.QuantifQuantile.Rd | 6
17 files changed, 306 insertions(+), 189 deletions(-)
Permanent link
Title: Normal Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Diff between mclust versions 5.0.0 dated 2015-04-09 and 5.0.1 dated 2015-04-22
Description: Normal Mixture Modelling fitted via EM algorithm for Model-Based Clustering, Classification, and Density Estimation, including Bayesian regularization.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut],
Luca Scrucca [aut, cre],
Thomas Brendan Murphy [ctb],
Michael Fop [ctb]
Maintainer: Luca Scrucca
DESCRIPTION | 10 +-
MD5 | 42 +++++-----
NAMESPACE | 7 +
R/clustCombi.R | 9 +-
R/init.R | 126 ++++++++++++++++----------------
R/mclust.R | 7 -
R/mclustda.R | 4 +
build/vignette.rds |binary
data/Baudry_etal_2010_JCGS_examples.rda |binary
data/GvHD.rda |binary
data/acidity.rda |binary
data/chevron.rda |binary
data/cross.rda |binary
data/diabetes.rda |binary
data/thyroid.rda |binary
data/wreath.rda |binary
inst/NEWS | 8 +-
man/entPlot.Rd | 4 -
man/hc.Rd | 7 +
man/mclustModelNames.Rd | 5 +
man/randomPairs.Rd | 4 -
src/mclust.f | 2
22 files changed, 124 insertions(+), 111 deletions(-)
Title: Log-Multiplicative Models, Including Association Models
Diff between logmult versions 0.6.1 dated 2015-01-13 and 0.6.2 dated 2015-04-22
Description: Functions to fit log-multiplicative models using gnm, with
support for convenient printing, plots, and jackknife/bootstrap
standard errors. For complex survey data, models can be fitted from
design objects from the 'survey' package. Currently supported models
include UNIDIFF (Erikson & Goldthorpe), a.k.a. log-multiplicative
layer effect model (Xie), and several association models: Goodman's
row-column association models of the RC(M) and RC(M)-L families
with one or several dimensions; two skew-symmetric association
models proposed by Yamaguchi and by van der Heijden & Mooijaart.
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat
DESCRIPTION | 8 +++---
MD5 | 6 ++--
NEWS | 3 ++
R/yrcskew.R | 75 +++++++++++++++++++++++++++++++-----------------------------
4 files changed, 49 insertions(+), 43 deletions(-)
Title: Generalized Nonlinear Models
Diff between gnm versions 1.0-7 dated 2014-01-02 and 1.0-8 dated 2015-04-22
Description: Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.
Author: Heather Turner [aut, cre],
David Firth [aut],
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Martin Maechler [ctb]
Maintainer: Heather Turner
gnm-1.0-7/gnm/data/House2001.csv.gz |only
gnm-1.0-7/gnm/data/backPain.txt.gz |only
gnm-1.0-7/gnm/data/barley.csv.gz |only
gnm-1.0-7/gnm/data/barley.txt.gz |only
gnm-1.0-7/gnm/data/mentalHealth.txt.gz |only
gnm-1.0-7/gnm/data/voting.txt.gz |only
gnm-1.0-7/gnm/data/wheat.txt.gz |only
gnm-1.0-8/gnm/DESCRIPTION | 38 +-
gnm-1.0-8/gnm/MD5 | 374 +++++++++++++---------------
gnm-1.0-8/gnm/R/Const.R | 15 +
gnm-1.0-8/gnm/R/Diag.R | 15 +
gnm-1.0-8/gnm/R/Dref.R | 15 +
gnm-1.0-8/gnm/R/DrefWeights.R | 15 +
gnm-1.0-8/gnm/R/Exp.R | 15 +
gnm-1.0-8/gnm/R/Inv.R | 15 +
gnm-1.0-8/gnm/R/Log.R | 15 +
gnm-1.0-8/gnm/R/Logistic.R | 15 +
gnm-1.0-8/gnm/R/Logit.R | 15 +
gnm-1.0-8/gnm/R/MPinv.R | 15 +
gnm-1.0-8/gnm/R/Mult.R | 15 +
gnm-1.0-8/gnm/R/MultHomog.R | 15 +
gnm-1.0-8/gnm/R/Raise.R | 15 +
gnm-1.0-8/gnm/R/Symm.R | 15 +
gnm-1.0-8/gnm/R/Topo.R | 15 +
gnm-1.0-8/gnm/R/add1.gnm.R | 23 +
gnm-1.0-8/gnm/R/addterm.gnm.R | 15 +
gnm-1.0-8/gnm/R/alias.gnm.R | 15 +
gnm-1.0-8/gnm/R/anova.gnm.R | 21 +
gnm-1.0-8/gnm/R/asGnm.R | 15 +
gnm-1.0-8/gnm/R/asGnm.default.R | 15 +
gnm-1.0-8/gnm/R/asGnm.glm.R | 15 +
gnm-1.0-8/gnm/R/asGnm.lm.R | 15 +
gnm-1.0-8/gnm/R/boxcox.gnm.R | 15 +
gnm-1.0-8/gnm/R/checkCall.R | 15 +
gnm-1.0-8/gnm/R/checkEstimable.R | 21 +
gnm-1.0-8/gnm/R/cholInv.R | 15 +
gnm-1.0-8/gnm/R/coef.gnm.R | 15 +
gnm-1.0-8/gnm/R/confint.gnm.R | 24 +
gnm-1.0-8/gnm/R/confint.profile.gnm.R | 18 +
gnm-1.0-8/gnm/R/cooks.distance.gnm.R | 18 +
gnm-1.0-8/gnm/R/dfbeta.gnm.R | 15 +
gnm-1.0-8/gnm/R/dfbetas.gnm.R | 15 +
gnm-1.0-8/gnm/R/drop1.gnm.R | 23 +
gnm-1.0-8/gnm/R/dropterm.gnm.R | 15 +
gnm-1.0-8/gnm/R/dummy.coef.gnm.R | 17 +
gnm-1.0-8/gnm/R/effects.gnm.R | 15 +
gnm-1.0-8/gnm/R/exitInfo.R | 15 +
gnm-1.0-8/gnm/R/expandCategorical.R | 57 ++--
gnm-1.0-8/gnm/R/fitted.gnm.R | 15 +
gnm-1.0-8/gnm/R/getContrasts.R | 17 +
gnm-1.0-8/gnm/R/getData.R | 19 +
gnm-1.0-8/gnm/R/glm.fit.e.R | 64 ++--
gnm-1.0-8/gnm/R/gnm-defunct.R | 15 +
gnm-1.0-8/gnm/R/gnm.R | 43 ++-
gnm-1.0-8/gnm/R/gnmFit.R | 21 +
gnm-1.0-8/gnm/R/gnmStart.R | 15 +
gnm-1.0-8/gnm/R/gnmTerms.R | 17 +
gnm-1.0-8/gnm/R/gnmTools.R | 27 +-
gnm-1.0-8/gnm/R/grp.sum.R | 15 +
gnm-1.0-8/gnm/R/hashSplit.R | 15 +
gnm-1.0-8/gnm/R/hatvalues.gnm.R | 20 +
gnm-1.0-8/gnm/R/influence.gnm.R | 17 +
gnm-1.0-8/gnm/R/instances.R | 15 +
gnm-1.0-8/gnm/R/kappa.gnm.R | 17 +
gnm-1.0-8/gnm/R/labels.gnm.R | 15 +
gnm-1.0-8/gnm/R/logtrans.gnm.R | 15 +
gnm-1.0-8/gnm/R/meanResiduals.R | 24 +
gnm-1.0-8/gnm/R/model.frame.gnm.R | 30 +-
gnm-1.0-8/gnm/R/model.matrix.gnm.R | 15 +
gnm-1.0-8/gnm/R/naToZero.R | 15 +
gnm-1.0-8/gnm/R/nonlinTerms.R | 15 +
gnm-1.0-8/gnm/R/ofInterest.R | 15 +
gnm-1.0-8/gnm/R/ofInterestReplacement.R | 17 +
gnm-1.0-8/gnm/R/parameters.R | 15 +
gnm-1.0-8/gnm/R/pickCoef.R | 17 +
gnm-1.0-8/gnm/R/plot.gnm.R | 18 +
gnm-1.0-8/gnm/R/plot.profile.gnm.R | 26 +
gnm-1.0-8/gnm/R/pprod.R | 15 +
gnm-1.0-8/gnm/R/prattle.R | 15 +
gnm-1.0-8/gnm/R/predict.gnm.R | 129 ++++++---
gnm-1.0-8/gnm/R/print.coef.gnm.R | 15 +
gnm-1.0-8/gnm/R/print.gnm.R | 15 +
gnm-1.0-8/gnm/R/print.meanResiduals.R | 16 +
gnm-1.0-8/gnm/R/print.profile.gnm.R | 15 +
gnm-1.0-8/gnm/R/print.summary.gnm.R | 27 +-
gnm-1.0-8/gnm/R/print.vcov.gnm.R | 15 +
gnm-1.0-8/gnm/R/profile.gnm.R | 24 +
gnm-1.0-8/gnm/R/proj.gnm.R | 17 +
gnm-1.0-8/gnm/R/psum.R | 15 +
gnm-1.0-8/gnm/R/quick.glm.fit.R | 17 +
gnm-1.0-8/gnm/R/quickRank.R | 21 +
gnm-1.0-8/gnm/R/residSVD.R | 15 +
gnm-1.0-8/gnm/R/residuals.gnm.R | 31 +-
gnm-1.0-8/gnm/R/rstandard.gnm.R | 15 +
gnm-1.0-8/gnm/R/rstudent.gnm.R | 17 +
gnm-1.0-8/gnm/R/se.R | 15 +
gnm-1.0-8/gnm/R/sumExpression.R | 15 +
gnm-1.0-8/gnm/R/summary.gnm.R | 34 ++
gnm-1.0-8/gnm/R/summary.meanResiduals.R | 15 +
gnm-1.0-8/gnm/R/termPredictors.R | 15 +
gnm-1.0-8/gnm/R/termPredictors.default.R | 15 +
gnm-1.0-8/gnm/R/termPredictors.gnm.R | 15 +
gnm-1.0-8/gnm/R/unlistOneLevel.R | 15 +
gnm-1.0-8/gnm/R/update.gnm.R | 18 +
gnm-1.0-8/gnm/R/updateLinear.R | 15 +
gnm-1.0-8/gnm/R/variable.names.gnm.R | 15 +
gnm-1.0-8/gnm/R/vcov.gnm.R | 18 +
gnm-1.0-8/gnm/R/wedderburn.R | 34 +-
gnm-1.0-8/gnm/R/weighted.MM.R | 15 +
gnm-1.0-8/gnm/R/weights.gnm.R | 15 +
gnm-1.0-8/gnm/build |only
gnm-1.0-8/gnm/data/House2001.rda |binary
gnm-1.0-8/gnm/data/backPain.rda |binary
gnm-1.0-8/gnm/data/barley.rda |binary
gnm-1.0-8/gnm/data/barleyHeights.rda |binary
gnm-1.0-8/gnm/data/cautres.rda |binary
gnm-1.0-8/gnm/data/erikson.rda |binary
gnm-1.0-8/gnm/data/friend.rda |binary
gnm-1.0-8/gnm/data/mentalHealth.rda |binary
gnm-1.0-8/gnm/data/voting.rda |binary
gnm-1.0-8/gnm/data/wheat.rda |binary
gnm-1.0-8/gnm/data/yaish.rda |binary
gnm-1.0-8/gnm/demo/gnm.R | 23 -
gnm-1.0-8/gnm/inst/NEWS | 37 ++
gnm-1.0-8/gnm/inst/doc/gnmOverview.R |only
gnm-1.0-8/gnm/inst/doc/gnmOverview.Rnw | 127 +++++----
gnm-1.0-8/gnm/inst/doc/gnmOverview.pdf |binary
gnm-1.0-8/gnm/man/Diag.Rd | 2
gnm-1.0-8/gnm/man/Dref.Rd | 2
gnm-1.0-8/gnm/man/Exp.Rd | 4
gnm-1.0-8/gnm/man/House2001.Rd | 3
gnm-1.0-8/gnm/man/MPinv.Rd | 2
gnm-1.0-8/gnm/man/Mult.Rd | 5
gnm-1.0-8/gnm/man/MultHomog.Rd | 1
gnm-1.0-8/gnm/man/Symm.Rd | 2
gnm-1.0-8/gnm/man/Topo.Rd | 1
gnm-1.0-8/gnm/man/anova.gnm.Rd | 4
gnm-1.0-8/gnm/man/asGnm.Rd | 1
gnm-1.0-8/gnm/man/backPain.Rd | 3
gnm-1.0-8/gnm/man/barley.Rd | 3
gnm-1.0-8/gnm/man/barleyHeights.Rd | 3
gnm-1.0-8/gnm/man/cautres.Rd | 3
gnm-1.0-8/gnm/man/checkEstimable.Rd | 3
gnm-1.0-8/gnm/man/confint.gnm.Rd | 5
gnm-1.0-8/gnm/man/erikson.Rd | 3
gnm-1.0-8/gnm/man/exitInfo.Rd | 1
gnm-1.0-8/gnm/man/expandCategorical.Rd | 2
gnm-1.0-8/gnm/man/friend.Rd | 3
gnm-1.0-8/gnm/man/getContrasts.Rd | 4
gnm-1.0-8/gnm/man/gnm.Rd | 3
gnm-1.0-8/gnm/man/instances.Rd | 1
gnm-1.0-8/gnm/man/meanResiduals.Rd | 2
gnm-1.0-8/gnm/man/mentalHealth.Rd | 3
gnm-1.0-8/gnm/man/nonlin.function.Rd | 1
gnm-1.0-8/gnm/man/ofInterest.Rd | 1
gnm-1.0-8/gnm/man/parameters.Rd | 1
gnm-1.0-8/gnm/man/pickCoef.Rd | 3
gnm-1.0-8/gnm/man/plot.gnm.Rd | 4
gnm-1.0-8/gnm/man/predict.gnm.Rd | 1
gnm-1.0-8/gnm/man/profile.gnm.Rd | 9
gnm-1.0-8/gnm/man/residSVD.Rd | 2
gnm-1.0-8/gnm/man/se.Rd | 3
gnm-1.0-8/gnm/man/summary.gnm.Rd | 4
gnm-1.0-8/gnm/man/vcov.gnm.Rd | 1
gnm-1.0-8/gnm/man/voting.Rd | 4
gnm-1.0-8/gnm/man/wedderburn.Rd | 5
gnm-1.0-8/gnm/man/wheat.Rd | 3
gnm-1.0-8/gnm/man/yaish.Rd | 4
gnm-1.0-8/gnm/src/gnm.c | 16 +
gnm-1.0-8/gnm/tests/RC.R | 1
gnm-1.0-8/gnm/tests/RC.Rout.save | 7
gnm-1.0-8/gnm/tests/RChomog.R | 2
gnm-1.0-8/gnm/tests/RChomog.Rout.save | 8
gnm-1.0-8/gnm/tests/biplot.R | 1
gnm-1.0-8/gnm/tests/biplot.Rout.save | 7
gnm-1.0-8/gnm/tests/bwt.R | 1
gnm-1.0-8/gnm/tests/bwt.Rout.save | 7
gnm-1.0-8/gnm/tests/diagonalRef.R | 1
gnm-1.0-8/gnm/tests/diagonalRef.Rout.save | 7
gnm-1.0-8/gnm/tests/doubleUnidiff.R | 1
gnm-1.0-8/gnm/tests/doubleUnidiff.Rout.save | 7
gnm-1.0-8/gnm/tests/gammi.R | 1
gnm-1.0-8/gnm/tests/gammi.Rout.save | 7
gnm-1.0-8/gnm/tests/logexcess.Rout.save | 6
gnm-1.0-8/gnm/tests/logistic.Rout.save | 6
gnm-1.0-8/gnm/tests/nls.Rout.save | 6
gnm-1.0-8/gnm/tests/stereotype.R | 1
gnm-1.0-8/gnm/tests/stereotype.Rout.save | 7
gnm-1.0-8/gnm/tests/unidiff.R | 1
gnm-1.0-8/gnm/tests/unidiff.Rout.save | 7
gnm-1.0-8/gnm/vignettes/gnmOverview.Rnw | 127 +++++----
gnm-1.0-8/gnm/vignettes/screenshot1.png |only
gnm-1.0-8/gnm/vignettes/screenshot2.png |only
gnm-1.0-8/gnm/vignettes/screenshot3.png |only
194 files changed, 2283 insertions(+), 630 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-23 1.1.1
2014-07-01 1.1
2014-06-21 1.0
Title: Visualization of Regression Models
Diff between visreg versions 2.1-1 dated 2015-02-25 and 2.2-0 dated 2015-04-22
Description: Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R (lm, glm, coxph, rlm, gam, locfit, randomForest, etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny
DESCRIPTION | 12 ++++++------
MD5 | 26 ++++++++++++++------------
NEWS | 5 +++++
R/Response.R | 28 ++++++++++++++++++++++++----
R/Terms.R | 1 +
R/makeYName.R |only
R/setupV.R | 6 ++++--
R/setupX.R | 2 +-
R/visreg.R | 12 +++++++++---
R/visreg2d.R | 13 +++++--------
R/visregLatticePlot.R | 7 ++-----
R/visregOverlayPlot.R | 5 +----
R/visregPlot.R | 13 ++++++++-----
inst/tests/mixed-models.R | 13 ++++++-------
tests/randomForest.R |only
15 files changed, 86 insertions(+), 57 deletions(-)
Title: Estimating Hidden Population Size using Respondent Driven
Sampling Data
Diff between sspse versions 0.5 dated 2015-03-24 and 0.5-1 dated 2015-04-22
Description: An integrated set of tools to estimate the size of a networked population based on respondent-driven sampling data. The package is part of the "RDS Analyst" suite of packages for the analysis of respondent-driven sampling data.
Author: Mark S. Handcock [aut, cre, cph],
Krista J. Gile [aut, cph]
Maintainer: Mark S. Handcock
DESCRIPTION | 12 ++++++------
MD5 | 28 ++++++++++++++--------------
NAMESPACE | 2 +-
R/plot.sspse.R | 2 +-
R/print.summary.sspse.R | 2 +-
R/sspse.utilities.R | 26 +++++++++++++++++++++-----
R/summary.size.R | 2 +-
inst/CITATION | 6 +++---
man/beginparallel.Rd | 2 +-
man/dsizeprior.Rd | 2 +-
man/plot.sspse.Rd | 2 +-
man/posteriorsize.Rd | 2 +-
man/print.summary.sspse.Rd | 2 +-
man/sspse-package.Rd | 2 +-
man/summary.sspse.Rd | 2 +-
15 files changed, 55 insertions(+), 39 deletions(-)
Title: Simulation of Evolutionary and Epidemiological Dynamics
Diff between seedy versions 1.0 dated 2014-10-16 and 1.2 dated 2015-04-22
Description: Suite of functions for the simulation, visualisation and analysis of bacterial evolution within- and between-host.
Author: Colin Worby
Maintainer: Colin Worby
DESCRIPTION | 8 ++++----
MD5 | 26 ++++++++++++++++----------
R/diversity.range.R | 4 ++--
R/flat.r |only
R/hump.r |only
R/plotoutbreak.R | 6 +++++-
R/simfixoutbreak.r |only
R/simulateoutbreak.R | 14 ++++++++++----
R/simulatepopulation.R | 21 ++++++++++++---------
R/transroutes.r | 3 ++-
man/diversity.range.Rd | 10 +++++-----
man/flat.Rd |only
man/hump.Rd |only
man/seedy-package.Rd | 4 ++--
man/simfixoutbreak.Rd |only
man/simulateoutbreak.Rd | 13 +++++++++++--
man/simulatepopulation.Rd | 25 ++++++++++++++++---------
17 files changed, 85 insertions(+), 49 deletions(-)
Title: Global Soil Information Facilities
Diff between GSIF versions 0.4-4 dated 2015-01-30 and 0.4-5 dated 2015-04-22
Description: Global Soil Information Facilities - tools (standards and functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut],
Bas Kempen [ctb],
Gerard Heuvelink [ctb],
Brendan Malone [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 12 ++--
MD5 | 58 ++++++++++-----------
NAMESPACE | 6 +-
R/AAAA.R | 2
R/AWCPTF.R | 2
R/LRI.R | 2
R/OCSKGM.R | 2
R/SoilGrid.validator.R |only
R/extract.list.R | 29 ++++++----
R/fit.gstatModel.R | 35 ++++++++----
R/fit.regModel.R | 107 ++++++++++++++++++++++++++-------------
R/fit.vgmModel.R | 36 ++++++-------
R/predict.gstatModel.R | 77 +++++++++++-----------------
R/spsample.prob.R | 6 +-
data/afsp.rda |binary
man/AWCPTF.Rd | 4 -
man/ERDICM.Rd | 2
man/FAO.SoilProfileCollection.Rd | 11 +---
man/LRI.Rd | 6 ++
man/OCSKGM.Rd | 2
man/SoilGrid.validator.Rd |only
man/afsp.Rd | 75 ++++++---------------------
man/cookfarm.Rd | 13 +++-
man/edgeroi.Rd | 4 -
man/extract.Rd | 5 +
man/fit.gstatModel.Rd | 63 +++++++++++-----------
man/fit.regModel.Rd | 26 ++++++++-
man/fit.vgmModel.Rd | 2
man/gstatModel.Rd | 2
man/mpspline.Rd | 5 -
man/spsample.prob.Rd | 14 ++---
31 files changed, 325 insertions(+), 283 deletions(-)
Title: Gender Prediction Based on First Names
Diff between genderizeR versions 1.0.0 dated 2015-02-08 and 1.1.0 dated 2015-04-22
Description: Utilizes the genderize.io API to predict gender from first
names extracted from a text vector. The accuracy of prediction could be
controlled by two parameters: counts of a first name in the database and
probability of prediction.
Author: Kamil Wais [aut, cre]
Maintainer: Kamil Wais
DESCRIPTION | 13 ++-
LICENSE | 2
MD5 | 48 +++++++-------
NAMESPACE | 2
NEWS | 52 +++++++++++----
R/findGivenNames.R | 87 +++++++++++++++++++++----
R/genderizeAPI.R | 136 +++++++++++++++++++++++++++++++---------
R/genderizeR.R | 2
R/numberOfNames.R | 8 +-
README.md | 43 +++++-------
man/authorships.Rd | 2
man/classificatonErrors.Rd | 2
man/findGivenNames.Rd | 9 ++
man/genderize.Rd | 2
man/genderizeAPI.Rd | 8 +-
man/genderizeBootstrapError.Rd | 2
man/genderizePredict.Rd | 2
man/genderizeR.Rd | 2
man/genderizeTrain.Rd | 2
man/givenNamesDB_authorships.Rd | 2
man/givenNamesDB_titles.Rd | 2
man/numberOfNames.Rd | 2
man/textPrepare.Rd | 2
man/titles.Rd | 2
tests |only
25 files changed, 299 insertions(+), 135 deletions(-)
Title: Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Diff between bootSVD versions 0.1 dated 2014-07-21 and 0.2 dated 2015-04-22
Description: Implements fast, exact bootstrap Principal Component Analysis and
Singular Value Decompositions for high dimensional data, as described in
(arxiv.org/abs/1405.0922). For data matrices that are too large to operate
on in memory, users can input objects with class 'ff' (see the 'ff'
package), where the actual data is stored on disk. In response, this
package will implement a block matrix algebra procedure for calculating the
principal components (PCs) and bootstrap PCs. Depending on options set by
the user, the 'parallel' package can be used to parallelize the calculation of
the bootstrap PCs.
Author: Aaron Fisher
Maintainer: Aaron Fisher
bootSVD-0.1/bootSVD/man/reindexDsByK.Rd |only
bootSVD-0.1/bootSVD/man/reindexPCsByK.Rd |only
bootSVD-0.2/bootSVD/DESCRIPTION | 16
bootSVD-0.2/bootSVD/MD5 | 41 -
bootSVD-0.2/bootSVD/NAMESPACE | 8
bootSVD-0.2/bootSVD/R/bootstrap_functions.R | 746 ++++++++++++++++-------
bootSVD-0.2/bootSVD/README.md | 5
bootSVD-0.2/bootSVD/man/As2Vs.Rd | 50 -
bootSVD-0.2/bootSVD/man/EEG_leadingV.Rd | 27
bootSVD-0.2/bootSVD/man/EEG_mu.Rd | 27
bootSVD-0.2/bootSVD/man/EEG_score_var.Rd | 30
bootSVD-0.2/bootSVD/man/bootPCA.Rd | 14
bootSVD-0.2/bootSVD/man/bootSVD.Rd | 253 +++----
bootSVD-0.2/bootSVD/man/bootSVD_LD.Rd | 93 --
bootSVD-0.2/bootSVD/man/fastSVD.Rd | 44 -
bootSVD-0.2/bootSVD/man/ffmatrixmult.Rd |only
bootSVD-0.2/bootSVD/man/genBootIndeces.Rd | 22
bootSVD-0.2/bootSVD/man/genQ.Rd | 15
bootSVD-0.2/bootSVD/man/getMomentsAndMomentCI.Rd | 59 -
bootSVD-0.2/bootSVD/man/os.Rd | 6
bootSVD-0.2/bootSVD/man/qrSVD.Rd | 37 -
bootSVD-0.2/bootSVD/man/reindexMatricesByK.Rd |only
bootSVD-0.2/bootSVD/man/reindexVectorsByK.Rd |only
bootSVD-0.2/bootSVD/man/simEEG.Rd | 63 -
24 files changed, 848 insertions(+), 708 deletions(-)