Package rfordummies updated to version 0.1.1 with previous version 0.0-2 dated 2014-08-18

Title: Code Examples to Accompany the Book "R for Dummies"
Description: Contains all the code examples in the book "R for Dummies" (1st edition). You can view the table of contents as well as the sample code for each chapter.
Author: Andrie de Vries [aut, cre], Joris Meys [aut]
Maintainer: Andrie de Vries

Diff between rfordummies versions 0.0-2 dated 2014-08-18 and 0.1.1 dated 2015-04-24

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Package spacetime updated to version 1.1-4 with previous version 1.1-3 dated 2015-01-22

Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal combining or aggregating, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [cre, aut], Benedikt Graeler [ctb], Tom Gottfried [ctb], Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma

Diff between spacetime versions 1.1-3 dated 2015-01-22 and 1.1-4 dated 2015-04-24

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Package sp updated to version 1.1-0 with previous version 1.0-17 dated 2015-01-08

Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Josh O'Brien [ctb]
Maintainer: Edzer Pebesma

Diff between sp versions 1.0-17 dated 2015-01-08 and 1.1-0 dated 2015-04-24

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Package RCurl updated to version 1.95-4.6 with previous version 1.95-4.5 dated 2014-12-06

Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang

Diff between RCurl versions 1.95-4.5 dated 2014-12-06 and 1.95-4.6 dated 2015-04-24

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 4 files changed, 9 insertions(+), 11 deletions(-)

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Package maptools updated to version 0.8-36 with previous version 0.8-34 dated 2015-02-03

Title: Tools for Reading and Handling Spatial Objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHG shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
Author: Roger Bivand [cre, aut], Nicholas Lewin-Koh [aut], Edzer Pebesma [ctb], Eric Archer [ctb], Adrian Baddeley [ctb], Hans-Jörg Bibiko [ctb], Steven Brey [ctb], Jonathan Callahan [ctb], German Carrillo [ctb], Stéphane Dray [ctb], David Forrest [ctb], Michael Friendly [ctb], Patrick Giraudoux [ctb], Duncan Golicher [ctb], Virgilio Gómez Rubio [ctb], Patrick Hausmann [ctb], Karl Ove Hufthammer [ctb], Thomas Jagger [ctb], Sebastian Luque [ctb], Don MacQueen [ctb], Andrew Niccolai [ctb], Edzer Pebesma [ctb], Oscar Perpiñán Lamigueiro [ctb], Tom Short [ctb], Greg Snow [ctb], Ben Stabler [ctb], Murray Stokely [ctb], Rolf Turner [ctb]
Maintainer: Roger Bivand

Diff between maptools versions 0.8-34 dated 2015-02-03 and 0.8-36 dated 2015-04-24

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Package TSMySQL (with last version 2013.9-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-29 2013.9-1
2012-10-02 2012.8-1
2012-05-03 2012.4-1
2012-03-29 2012.3-1
2011-11-02 2011.11-1
2011-09-14 2011.8-2
2011-08-14 2011.8-1
2011-07-25 2011.7-1
2011-03-23 2011.3-1
2010-12-22 2010.12-1
2010-05-31 2010.5-1
2010-04-11 2010.3-1
2009-12-16 2009.10-1
2009-10-27 2009.5-1
2009-03-25 2009.3-2
2009-03-22 2009.3-1
2008-11-03 2008.11-1
2008-08-06 2008.8-1
2008-05-08 2008.5-1
2007-11-05 2007.10-1

Permanent link

Package DiceKriging updated to version 1.5.5 with previous version 1.5.4 dated 2015-01-05

Title: Kriging Methods for Computer Experiments
Description: Estimation, validation and prediction of kriging models. Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributors: Clement Chevalier, Yann Richet.
Maintainer: Olivier Roustant

Diff between DiceKriging versions 1.5.4 dated 2015-01-05 and 1.5.5 dated 2015-04-24

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New package RJafroc with initial version 0.0.1
Package: RJafroc
Type: Package
Title: Analysis of Data Acquired Using the Receiver Operating Characteristic Paradigm and Its Extensions
Version: 0.0.1
Date: 2015-04-21
Authors@R: c(person("Xuetong", "Zhai", role = c("aut", "cre"), email = "xuetong.zhai@gmail.com"), person("Dev", "Chakraborty", role = c("aut", "ths"), email = "dpc10ster@gmail.com"))
Maintainer: Xuetong Zhai
Depends: tools, xlsx, ggplot2, stringr, utils
Suggests: knitr
VignetteBuilder: knitr
Description: A common task in medical imaging is assessing whether a new imaging system or device is an improvement over an existing one. Observer performance methodology, such as receiver operating characteristic analysis, is widely used for this purpose. Receiver operating characteristic studies are often required for regulatory approval of new devices. The purpose of this work is to software for the analysis of data acquired using the receiver operating characteristic paradigm and its location specific extensions. It is an enhanced implementation of existing Windows software (http://www.devchakraborty.com). In this paradigm the radiologist rates each image for confidence in presence of disease. The images are typically split equally between actually non-diseased and diseased. A common figure of merit is the area under the receiver operating characteristic curve, which has the physical interpretation as the probability that a diseased image is rated higher than a non-diseased one. In receiver operating characteristic studies a number of radiologists (readers) rate images in two or more treatments, and the object of the analysis is to determine the significance of the inter-treatment difference between reader-averaged figures of merit. In the free-response paradigm the reader marks the locations of suspicious regions and rates each region for confidence in presence of disease, and credit for detection is only given if a true lesion is correctly localized. In the region of interest paradigm each image is divided into a number of regions and the reader rates each region. Each paradigm requires definition of a valid figure of merit that rewards correct decisions and penalizes incorrect ones and specialized significance testing procedures are applied. The package reads data in all currently used data formats including Excel. Significance testing uses two models in widespread use, a jackknife pseudo-value based model and an analysis of variance model with correlated errors. Included are tools for (1) calculating a variety of free-response figures of merit; (2) sample size estimation for planning a future study based on pilot data; (3) viewing empirical operating characteristics in receiver operating characteristic and free-response paradigms; (4) producing formatted report files; and (5) saving a data file in appropriate format for analysis with alternate software.
License: GPL-3
LazyData: true
URL: http://www.devchakraborty.com
Packaged: 2015-04-23 03:52:09 UTC; XuetongZhai
Author: Xuetong Zhai [aut, cre], Dev Chakraborty [aut, ths]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-24 08:18:56

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Package tsDyn updated to version 0.9-43 with previous version 0.9-41 dated 2014-08-26

Title: Nonlinear Time Series Models with Regime Switching
Description: Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Author: Antonio Fabio Di Narzo [aut], Jose Luis Aznarte [ctb], Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler

Diff between tsDyn versions 0.9-41 dated 2014-08-26 and 0.9-43 dated 2015-04-24

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Permanent link

New package RRTCS with initial version 0.0.1
Package: RRTCS
Type: Package
Title: Randomized Response Techniques for Complex Surveys
Version: 0.0.1
Date: 2015-04-22
Author: Beatriz Cobo Rodríguez, María del Mar Rueda García, Antonio Arcos Cebrián
Maintainer: Beatriz Cobo Rodríguez
Description: Point and interval estimation of linear parameters with data obtained from complex surveys (including stratified and clustered samples) when randomization techniques are used. The randomized response technique was developed to obtain estimates that are more valid when studying sensitive topics. Estimators and variances for 14 randomized response methods for qualitative variables and 7 randomized response methods for quantitative variables are also implemented. In addition, some data sets from surveys with these randomization methods are included in the package.
License: GPL (>= 2)
Encoding: UTF-8
Imports: sampling, samplingVarEst
Packaged: 2015-04-23 18:21:36 UTC; Usuario
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-04-24 06:50:24

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Package PBSmapping updated to version 2.69.76 with previous version 2.68.68 dated 2015-01-14

Title: Mapping Fisheries Data and Spatial Analysis Tools
Description: This software has evolved from fisheries research conducted at the Pacific Biological Station (PBS) in `Nanaimo', British Columbia, Canada. It extends the R language to include two-dimensional plotting features similar to those commonly available in a Geographic Information System (GIS). Embedded C code speeds algorithms from computational geometry, such as finding polygons that contain specified point events or converting between longitude-latitude and Universal Transverse Mercator (UTM) coordinates. Additionally, we include `C++' code developed by Angus Johnson for the `Clipper' library. Also included are data for a global shoreline and other data sets in the public domain. The R directory `.../library/PBSmapping/doc' offers a complete user's guide, which should be consulted to use package functions effectively.
Author: Jon T. Schnute [aut], Nicholas Boers [aut], Rowan Haigh [aut, cre], Alex Couture-Beil [ctb], Denis Chabot [ctb], Chris Grandin [ctb], Angus Johnson [ctb], Paul Wessel [ctb], Franklin Antonio [ctb], Nicholas J. Lewin-Koh [ctb], Roger Bivand [ctb]
Maintainer: Rowan Haigh

Diff between PBSmapping versions 2.68.68 dated 2015-01-14 and 2.69.76 dated 2015-04-24

 PBSmapping-2.68.68/PBSmapping/man/nepacLLhigh.Rd         |only
 PBSmapping-2.68.68/PBSmapping/man/worldLL.Rd             |only
 PBSmapping-2.68.68/PBSmapping/man/worldLLhigh.Rd         |only
 PBSmapping-2.69.76/PBSmapping/DESCRIPTION                |   45 
 PBSmapping-2.69.76/PBSmapping/MD5                        |   41 
 PBSmapping-2.69.76/PBSmapping/NAMESPACE                  |    9 
 PBSmapping-2.69.76/PBSmapping/R/PBSfigs.r                |    4 
 PBSmapping-2.69.76/PBSmapping/R/PBSmapping.r             |  273 
 PBSmapping-2.69.76/PBSmapping/data/nepacLL.rda           |binary
 PBSmapping-2.69.76/PBSmapping/data/surveyData.rda        |binary
 PBSmapping-2.69.76/PBSmapping/inst/doc/ChangeLog.txt     |  181 
 PBSmapping-2.69.76/PBSmapping/inst/doc/PBSmapping-UG.pdf |binary
 PBSmapping-2.69.76/PBSmapping/inst/doc/index.html        |    2 
 PBSmapping-2.69.76/PBSmapping/man/EventData.Rd           |   67 
 PBSmapping-2.69.76/PBSmapping/man/LocationSet.Rd         |   34 
 PBSmapping-2.69.76/PBSmapping/man/PolyData.Rd            |   33 
 PBSmapping-2.69.76/PBSmapping/man/PolySet.Rd             |   31 
 PBSmapping-2.69.76/PBSmapping/man/importGSHHS.Rd         |  143 
 PBSmapping-2.69.76/PBSmapping/man/joinPolys.Rd           |   55 
 PBSmapping-2.69.76/PBSmapping/man/nepacLL.Rd             |   63 
 PBSmapping-2.69.76/PBSmapping/src/clipper.cpp            | 4772 ++++++++-------
 PBSmapping-2.69.76/PBSmapping/src/clipper.h              |  358 -
 PBSmapping-2.69.76/PBSmapping/src/clipperWrapper.cpp     |  198 
 23 files changed, 3767 insertions(+), 2542 deletions(-)

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Package mma updated to version 2.0-0 with previous version 1.0-1 dated 2015-04-10

Title: Multiple Mediation Analysis
Description: Used for general multiple mediation analysis. The analysis method is described in Yu et al. 2014, "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189.
Author: Qingzhao Yu
Maintainer: Qingzhao Yu

Diff between mma versions 1.0-1 dated 2015-04-10 and 2.0-0 dated 2015-04-24

 DESCRIPTION           |    8 +-
 MD5                   |   14 ++---
 R/mma.r               |  135 ++++++++++++++++++++++++++++++++++++++++----------
 man/boot.med.binx.Rd  |    3 -
 man/boot.med.contx.Rd |    1 
 man/mma.Rd            |    1 
 man/plot.mma.Rd       |   18 ++++--
 man/summary.mma.Rd    |    7 +-
 8 files changed, 140 insertions(+), 47 deletions(-)

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