Title: Time Frame Coding Kernel Extensions
Diff between tframePlus versions 2013.9-1 dated 2013-09-24 and 2015.1-2 dated 2015-04-27
Description: Extensions and additional tframe utilities.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 18 ++++++-------
MD5 | 17 ++++++------
NAMESPACE | 10 ++++++-
NEWS | 29 +++++++++++++++++++++
R/timeSeries.R | 13 +++++++++
R/utils.R | 70 +++++++++++++++++++++++++++++++++++------------------
R/xts.R | 8 +++---
R/zoo.R | 4 +--
build/vignette.rds |binary
tests/zoo2.R |only
10 files changed, 120 insertions(+), 49 deletions(-)
Title: Various Programming Utilities
Diff between R.utils versions 2.0.1 dated 2015-04-26 and 2.0.2 dated 2015-04-27
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 +++---
MD5 | 49 +++++++++++++++++++--------------------
NEWS | 9 +++++++
R/Arguments.R | 29 ++++++++++++++++++-----
R/Options.R | 54 +++++++++++++++++++++----------------------
R/Sys.readlink2.R | 2 -
R/System.R | 4 +--
R/fileAccess.R | 2 -
R/findFiles.R | 4 +--
R/isEof.connection.R | 4 +--
R/readWindowsShortcut.R | 8 +++---
R/removeDirectory.R | 2 -
R/toUrl.R | 2 -
man/Options.Rd | 54 +++++++++++++++++++++----------------------
man/as.character.Options.Rd | 38 +++++++++++++++---------------
man/as.list.Options.Rd | 28 +++++++++++-----------
man/equals.Options.Rd | 36 ++++++++++++++--------------
man/getFilename.Arguments.Rd | 4 +++
man/getLeaves.Options.Rd | 28 +++++++++++-----------
man/getOption.Options.Rd | 54 +++++++++++++++++++++----------------------
man/hasOption.Options.Rd | 42 ++++++++++++++++-----------------
man/names.Options.Rd | 28 +++++++++++-----------
man/nbrOfOptions.Options.Rd | 28 +++++++++++-----------
man/setOption.Options.Rd | 48 +++++++++++++++++++-------------------
man/str.Options.Rd | 40 +++++++++++++++----------------
tests/Arguments-FILES.R |only
26 files changed, 318 insertions(+), 287 deletions(-)
Title: Interface to the Search API for the 'PLoS' Journals
Diff between rplos versions 0.4.6 dated 2015-01-23 and 0.4.7 dated 2015-04-27
Description: A programmatic interface to the 'SOLR' based
search API (http://api.plos.org/) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing faceted searches, doing
highlight searches, and viewing results of highlighted
searches in a browser.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain
rplos-0.4.6/rplos/vignettes/figure |only
rplos-0.4.7/rplos/DESCRIPTION | 23 +-
rplos-0.4.7/rplos/MD5 | 75 ++++-----
rplos-0.4.7/rplos/NAMESPACE | 3
rplos-0.4.7/rplos/NEWS | 11 +
rplos-0.4.7/rplos/R/citations.R |only
rplos-0.4.7/rplos/README.md | 175 +++++++++++-----------
rplos-0.4.7/rplos/build/vignette.rds |binary
rplos-0.4.7/rplos/inst/doc/facethighlight.html | 100 +++++-------
rplos-0.4.7/rplos/inst/doc/fulltext.html | 100 +++++-------
rplos-0.4.7/rplos/inst/doc/rplos_vignette.html | 100 +++++-------
rplos-0.4.7/rplos/man/addmissing.Rd | 2
rplos-0.4.7/rplos/man/check_response.Rd | 2
rplos-0.4.7/rplos/man/citations.Rd |only
rplos-0.4.7/rplos/man/concat_todf.Rd | 2
rplos-0.4.7/rplos/man/crossref-defunct.Rd | 2
rplos-0.4.7/rplos/man/facetplos.Rd | 2
rplos-0.4.7/rplos/man/formatarticleurl.Rd | 2
rplos-0.4.7/rplos/man/full_text_urls.Rd | 2
rplos-0.4.7/rplos/man/highbrow.Rd | 2
rplos-0.4.7/rplos/man/highplos.Rd | 2
rplos-0.4.7/rplos/man/insertnones.Rd | 2
rplos-0.4.7/rplos/man/isocodes.Rd | 2
rplos-0.4.7/rplos/man/journalnamekey.Rd | 2
rplos-0.4.7/rplos/man/plos_fulltext.Rd | 2
rplos-0.4.7/rplos/man/plosabstract.Rd | 2
rplos-0.4.7/rplos/man/plosauthor.Rd | 2
rplos-0.4.7/rplos/man/plosfields.Rd | 2
rplos-0.4.7/rplos/man/plosfigtabcaps.Rd | 2
rplos-0.4.7/rplos/man/plossubject.Rd | 2
rplos-0.4.7/rplos/man/plostitle.Rd | 2
rplos-0.4.7/rplos/man/plosviews.Rd | 2
rplos-0.4.7/rplos/man/plosword.Rd | 2
rplos-0.4.7/rplos/man/plot_throughtime.Rd | 2
rplos-0.4.7/rplos/man/rplos-defunct.Rd | 2
rplos-0.4.7/rplos/man/rplos.Rd | 2
rplos-0.4.7/rplos/man/searchplos.Rd | 2
rplos-0.4.7/rplos/tests/testthat/test-citations.R |only
38 files changed, 305 insertions(+), 332 deletions(-)
Title: Friendly Regular Expressions
Diff between rex versions 0.2.0 dated 2014-11-26 and 1.0.1 dated 2015-04-27
Description: A friendly interface for the construction of regular expressions.
Author: Kevin Ushey [aut],
Jim Hester [aut, cre],
Robert Krzyzanowski [aut]
Maintainer: Jim Hester
DESCRIPTION | 28 ++++++------
MD5 | 90 ++++++++++++++++++++++------------------
NAMESPACE | 2
R/aaa.R | 12 +----
R/character_class.R | 10 ++++
R/escape.R | 26 +++--------
R/lookarounds.R | 7 +++
R/match.R | 60 ++++++++++++--------------
R/rex-mode.R | 2
R/rex.R | 9 ----
R/shortcuts.R | 4 +
R/utils.R | 2
R/zzz.R | 5 +-
README.md | 2
build/vignette.rds |binary
inst/doc/log_parsing.html | 6 +-
inst/doc/stackoverflow.R |only
inst/doc/stackoverflow.Rmd |only
inst/doc/stackoverflow.html |only
inst/doc/url_parsing.html | 4 -
man/as.regex.Rd | 2
man/capture.Rd | 16 +++----
man/character_class.Rd | 7 ++-
man/character_class_escape.Rd | 2
man/counts.Rd | 19 ++++----
man/escape.Rd | 2
man/group.Rd | 19 ++++----
man/lookarounds.Rd | 20 ++++++--
man/not.Rd | 19 ++++----
man/or.Rd | 19 ++++----
man/pipe.Rd | 2
man/re_matches.Rd | 4 -
man/re_substitutes.Rd | 9 ++--
man/regex.Rd | 7 ---
man/register_shortcuts.Rd | 2
man/rex.Rd | 19 ++++----
man/rex_mode.Rd | 2
man/shortcuts.Rd | 25 +++++------
man/single_shortcuts.Rd | 2
man/wildcards.Rd | 19 ++++----
tests/testthat/test-aaa.R |only
tests/testthat/test-common.R | 2
tests/testthat/test-escape.R |only
tests/testthat/test-match.R | 48 +++++++++++++++------
tests/testthat/test-print.R |only
tests/testthat/test-rex_mode.R |only
tests/testthat/test-shortcuts.R |only
tests/testthat/test-zzz.R |only
vignettes/log_parsing.Rmd | 11 +---
vignettes/stackoverflow.Rmd |only
vignettes/url_parsing.Rmd | 16 +++----
51 files changed, 292 insertions(+), 270 deletions(-)
Title: Patient-Centered Network Meta-Analysis
Diff between pcnetmeta versions 2.0 dated 2015-03-20 and 2.1 dated 2015-04-27
Description: Provides functions to perform arm-based network meta-analysis for datasets with binary and continuous outcomes.
Author: Lifeng Lin, Jing Zhang, and Haitao Chu
Maintainer: Lifeng Lin
pcnetmeta-2.0/pcnetmeta/R/model.binary.hom.R |only
pcnetmeta-2.0/pcnetmeta/R/model.cont.hom.R |only
pcnetmeta-2.0/pcnetmeta/R/model.followup.hom.R |only
pcnetmeta-2.0/pcnetmeta/R/model.py.hom.R |only
pcnetmeta-2.1/pcnetmeta/DESCRIPTION | 18 +-
pcnetmeta-2.1/pcnetmeta/MD5 | 82 +++++-----
pcnetmeta-2.1/pcnetmeta/NAMESPACE | 4
pcnetmeta-2.1/pcnetmeta/R/ci.plot.R | 17 +-
pcnetmeta-2.1/pcnetmeta/R/forest.plot.R |only
pcnetmeta-2.1/pcnetmeta/R/model.binary.het.cor.R | 37 ++++
pcnetmeta-2.1/pcnetmeta/R/model.binary.het.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.binary.het.ind.R | 69 +++++++-
pcnetmeta-2.1/pcnetmeta/R/model.binary.hom.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.binary.hom.ind.R |only
pcnetmeta-2.1/pcnetmeta/R/model.cont.het.cor.R | 32 +++
pcnetmeta-2.1/pcnetmeta/R/model.cont.het.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.cont.het.ind.R | 59 ++++++-
pcnetmeta-2.1/pcnetmeta/R/model.cont.hom.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.cont.hom.ind.R |only
pcnetmeta-2.1/pcnetmeta/R/model.followup.het.cor.R | 36 ++++
pcnetmeta-2.1/pcnetmeta/R/model.followup.het.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.followup.het.ind.R | 67 +++++++-
pcnetmeta-2.1/pcnetmeta/R/model.followup.hom.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.followup.hom.ind.R |only
pcnetmeta-2.1/pcnetmeta/R/model.py.het.cor.R | 35 +++-
pcnetmeta-2.1/pcnetmeta/R/model.py.het.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.py.het.ind.R | 65 +++++++-
pcnetmeta-2.1/pcnetmeta/R/model.py.hom.eqcor.R |only
pcnetmeta-2.1/pcnetmeta/R/model.py.hom.ind.R |only
pcnetmeta-2.1/pcnetmeta/R/nma.ab.R | 130 +++++++++++-----
pcnetmeta-2.1/pcnetmeta/R/nma.ab.cont.R | 107 +++++++++----
pcnetmeta-2.1/pcnetmeta/R/nma.ab.followup.R | 153 ++++++++++++------
pcnetmeta-2.1/pcnetmeta/R/nma.ab.py.R | 154 ++++++++++++-------
pcnetmeta-2.1/pcnetmeta/R/nma.networkplot.R | 46 ++++-
pcnetmeta-2.1/pcnetmeta/R/rank.prob.R |only
pcnetmeta-2.1/pcnetmeta/data/diabetes.rda |binary
pcnetmeta-2.1/pcnetmeta/data/dietaryfat.rda |binary
pcnetmeta-2.1/pcnetmeta/data/parkinson.rda |binary
pcnetmeta-2.1/pcnetmeta/data/smoke.rda |binary
pcnetmeta-2.1/pcnetmeta/man/ci.plot.Rd | 18 --
pcnetmeta-2.1/pcnetmeta/man/diabetes.Rd | 14 -
pcnetmeta-2.1/pcnetmeta/man/dietaryfat.Rd | 14 -
pcnetmeta-2.1/pcnetmeta/man/forest.plot.Rd |only
pcnetmeta-2.1/pcnetmeta/man/nma.ab.Rd | 103 ++++++------
pcnetmeta-2.1/pcnetmeta/man/nma.ab.cont.Rd | 76 ++++-----
pcnetmeta-2.1/pcnetmeta/man/nma.ab.followup.Rd | 80 ++++-----
pcnetmeta-2.1/pcnetmeta/man/nma.ab.py.Rd | 75 ++++-----
pcnetmeta-2.1/pcnetmeta/man/nma.networkplot.Rd | 48 +++--
pcnetmeta-2.1/pcnetmeta/man/parkinson.Rd | 12 -
pcnetmeta-2.1/pcnetmeta/man/pcnetmeta-package.Rd | 25 ---
pcnetmeta-2.1/pcnetmeta/man/rank.prob.Rd |only
pcnetmeta-2.1/pcnetmeta/man/smoke.Rd | 12 -
52 files changed, 1090 insertions(+), 498 deletions(-)
Title: Estimation of Conditional Quantiles using Optimal Quantization
Diff between QuantifQuantile versions 2.0 dated 2015-04-22 and 2.1 dated 2015-04-27
More information about QuantifQuantile at CRAN
Description: Estimation of conditional quantiles using optimal quantization.
Construction of an optimal grid of N quantizers, estimation of conditional
quantiles and data driven selection of the size N of the grid. Graphical
illustrations for the selection of N and of resulting estimated curves or
surfaces when the dimension of the covariate is one or two.
Author: Isabelle Charlier and Davy Paindaveine and Jerome Saracco
Maintainer: Isabelle Charlier
DESCRIPTION | 8 ++++----
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 2 +-
R/QuantifQuantile.R | 18 +++++++++++-------
R/QuantifQuantile.d.R | 12 ++++++++----
R/QuantifQuantile.d2.R | 12 ++++++++----
R/plot.QuantifQuantile.R | 6 +++---
R/print.QuantifQuantile.R | 4 ++--
R/summary.QuantifQuantile.R | 4 ++--
man/QuantifQuantile.Rd | 22 +++++++++++++---------
man/QuantifQuantile.d.Rd | 15 ++++++++++-----
man/QuantifQuantile.d2.Rd | 15 ++++++++++-----
man/choice.grid.Rd | 3 ++-
man/plot.QuantifQuantile.Rd | 9 +++++----
man/print.QuantifQuantile.Rd | 7 ++++---
man/summary.QuantifQuantile.Rd | 7 ++++---
16 files changed, 102 insertions(+), 72 deletions(-)
Permanent link
Title: Empirical Likelihood Analysis for the Cox Model and
Yang-Prentice (2005) Model
Diff between ELYP versions 0.7-1 dated 2015-03-27 and 0.7-2 dated 2015-04-27
Description: Empirical likelihood ratio tests for the Yang and Prentice (short/long term hazards ratio) models.
Empirical likelihood tests within a Cox model, for parameters defined via
both baseline hazard function and regression parameters.
Author: Mai Zhou
Maintainer: Mai Zhou
DESCRIPTION | 8 ++++----
MD5 | 30 +++++++++++++++---------------
R/fitYP4.R | 2 +-
R/fitYP41.R | 2 +-
R/myLLfun.R | 2 +-
R/myLLfun2.R | 2 +-
R/myffitYP3.R | 2 +-
R/simuDataYP.R | 2 +-
man/CoxEL.Rd | 16 ++++++++++------
man/CoxFindL2.Rd | 31 +++++++++++++++++++------------
man/CoxFindL3.Rd | 5 +++--
man/CoxFindU2.Rd | 10 ++--------
man/CoxFindU3.Rd | 4 ++--
man/findL3.Rd | 2 +-
man/findU3.Rd | 2 +-
man/simuDataYP.Rd | 10 +++++-----
16 files changed, 68 insertions(+), 62 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Diff between dataRetrieval versions 2.2.0 dated 2015-04-09 and 2.2.1 dated 2015-04-27
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information System (NWIS) tools. Both EPA and USGS water
quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut]
Maintainer: Laura DeCicco
dataRetrieval-2.2.0/dataRetrieval/vignettes/dataRetrieval-concordance.tex |only
dataRetrieval-2.2.0/dataRetrieval/vignettes/figure |only
dataRetrieval-2.2.1/dataRetrieval/DESCRIPTION | 10 -
dataRetrieval-2.2.1/dataRetrieval/MD5 | 83 ++++------
dataRetrieval-2.2.1/dataRetrieval/NAMESPACE | 2
dataRetrieval-2.2.1/dataRetrieval/R/importWaterML1.r | 30 ++-
dataRetrieval-2.2.1/dataRetrieval/R/readWQPdata.R | 1
dataRetrieval-2.2.1/dataRetrieval/R/whatWQPsites.R | 16 +
dataRetrieval-2.2.1/dataRetrieval/build/vignette.rds |binary
dataRetrieval-2.2.1/dataRetrieval/inst/doc/dataRetrieval.pdf |binary
dataRetrieval-2.2.1/dataRetrieval/man/checkWQPdates.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/constructNWISURL.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/constructWQPURL.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/countyCd.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/dataRetrieval-package.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/getWebServiceData.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/importRDB1.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/importWQP.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/importWaterML1.Rd | 6
dataRetrieval-2.2.1/dataRetrieval/man/importWaterML2.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/pCodeToName.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/parameterCdFile.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISdata.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISdv.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISgwl.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISmeas.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISpCode.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISpeak.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISqw.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISrating.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISsite.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readNWISuv.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readWQPdata.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/readWQPqw.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/renameNWISColumns.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/stateCd.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/stateCdLookup.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/whatNWISdata.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/whatNWISsites.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/whatWQPsites.Rd | 2
dataRetrieval-2.2.1/dataRetrieval/man/zeroPad.Rd | 2
41 files changed, 116 insertions(+), 92 deletions(-)
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Diff between checkpoint versions 0.3.9 dated 2015-03-17 and 0.3.10 dated 2015-04-27
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install
packages as they existed on CRAN on a specific snapshot date as if you had
a CRAN time machine. To achieve reproducibility, the checkpoint() function
installs the packages required or called by your project and scripts to a
local library exactly as they existed at the specified point in time. Only
those packages are available to your project, thereby avoiding any package
updates that came later and may have altered your results. In this way,
anyone using checkpoint's checkpoint() can ensure the reproducibility of
your scripts or projects at any time. To create the snapshot archives, once
a day (at midnight UTC) Revolution Analytics refreshes the Austria CRAN mirror, on the "Managed
R Archived Network" server (http://mran.revolutionanalytics.com/).
Immediately after completion of the rsync mirror process, the process takes a
snapshot, thus creating the archive. Snapshot archives exist starting from
2014-09-17.
Author: Revolution Analytics
Maintainer: Andrie de Vries
DESCRIPTION | 12 ++---
MD5 | 23 +++++-----
NAMESPACE | 1
R/checkpoint.R | 56 +++++++++++++++----------
R/checkpoint_paths.R | 35 +++++++++++++--
R/installMissingBasePackages.R | 11 ++---
R/setSnapshot.R |only
R/test-common-functions.R | 4 -
build/vignette.rds |binary
inst/examples/example_setSnapshot.R |only
man/setSnapshot.Rd |only
tests/testthat/test-0-snapshots.R | 2
tests/testthat/test-2-checkpoint.R | 79 ++++++++++++++++++++++++------------
vignettes/checkpoint.Rmd | 11 ++---
14 files changed, 153 insertions(+), 81 deletions(-)
Title: Simulation and Group Sequential Monitoring of Randomized
Two-Stage Treatment Efficacy Trials with Time-to-Event
Endpoints
Diff between seqDesign versions 1.0.2 dated 2014-10-08 and 1.1 dated 2015-04-27
Description: A modification of the preventive vaccine efficacy trial design of Gilbert, Grove et al. (2011, Statistical Communications in Infectious Diseases) is implemented, with application generally to individual-randomized clinical trials with multiple active treatment groups and a shared control group, and a study endpoint that is a time-to-event endpoint subject to right-censoring. The design accounts for the issues that the efficacy of the treatment/vaccine groups may take time to accrue while the multiple treatment administrations/vaccinations are given; there is interest in assessing the durability of treatment efficacy over time; and group sequential monitoring of each treatment group for potential harm, non-efficacy/efficacy futility, and high efficacy is warranted. The design divides the trial into two stages of time periods, where each treatment is first evaluated for efficacy in the first stage of follow-up, and, if and only if it shows significant treatment efficacy in stage one, it is evaluated for longer-term durability of efficacy in stage two. The package produces plots and tables describing operating characteristics of a specified design including an unconditional power for intention-to-treat and per-protocol/as-treated analyses; trial duration; probabilities of the different possible trial monitoring outcomes (e.g., stopping early for non-efficacy); unconditional power for comparing treatment efficacies; and distributions of numbers of endpoint events occurring after the treatments/vaccinations are given, useful as input parameters for the design of studies of the association of biomarkers with a clinical outcome (surrogate endpoint problem). The code can be used for a single active treatment versus control design and for a single-stage design.
Author: Michal Juraska and Doug Grove, with contributions from Xuesong Yu and Peter B. Gilbert
Maintainer: Michal Juraska
seqDesign-1.0.2/seqDesign/inst/extdata/seqDesignReport.Rnw |only
seqDesign-1.1/seqDesign/DESCRIPTION | 16
seqDesign-1.1/seqDesign/MD5 | 31
seqDesign-1.1/seqDesign/NAMESPACE | 6
seqDesign-1.1/seqDesign/R/seqDesign.R | 6526 +++++-----
seqDesign-1.1/seqDesign/build/vignette.rds |binary
seqDesign-1.1/seqDesign/inst/doc/seqDesignInstructions.R | 101
seqDesign-1.1/seqDesign/inst/doc/seqDesignInstructions.Rnw | 211
seqDesign-1.1/seqDesign/inst/doc/seqDesignInstructions.pdf |binary
seqDesign-1.1/seqDesign/inst/extdata/seqDesignReportSample.Rnw |only
seqDesign-1.1/seqDesign/inst/extdata/seqDesignReportSample.pdf |binary
seqDesign-1.1/seqDesign/man/VEpowerPP.Rd | 169
seqDesign-1.1/seqDesign/man/censTrial.Rd | 153
seqDesign-1.1/seqDesign/man/getBlockSize.Rd |only
seqDesign-1.1/seqDesign/man/monitorTrial.Rd | 233
seqDesign-1.1/seqDesign/man/rankTrial.Rd | 186
seqDesign-1.1/seqDesign/man/simTrial.Rd | 181
seqDesign-1.1/seqDesign/vignettes/seqDesignInstructions.Rnw | 211
18 files changed, 4115 insertions(+), 3909 deletions(-)
Title: Utility Sparse Matrix Functions for Quantitative Language
Comparison
Diff between qlcMatrix versions 0.9.2 dated 2014-05-19 and 0.9.4 dated 2015-04-27
Description: Extension of the functionality of the Matrix package for using sparse matrices. Some of the functions are very general, while other are highly specific for special data format as used for quantitative language comparison (QLC).
Author: Michael Cysouw
Maintainer: Michael Cysouw
qlcMatrix-0.9.2/qlcMatrix/R/qlcMatrix.R |only
qlcMatrix-0.9.4/qlcMatrix/DESCRIPTION | 17 +++---
qlcMatrix-0.9.4/qlcMatrix/MD5 | 55 ++++++++++++---------
qlcMatrix-0.9.4/qlcMatrix/NAMESPACE | 3 -
qlcMatrix-0.9.4/qlcMatrix/R/assoc.R |only
qlcMatrix-0.9.4/qlcMatrix/R/base.R |only
qlcMatrix-0.9.4/qlcMatrix/R/sim.R |only
qlcMatrix-0.9.4/qlcMatrix/R/split.R |only
qlcMatrix-0.9.4/qlcMatrix/R/utils.R |only
qlcMatrix-0.9.4/qlcMatrix/README.md | 10 +++
qlcMatrix-0.9.4/qlcMatrix/build |only
qlcMatrix-0.9.4/qlcMatrix/inst |only
qlcMatrix-0.9.4/qlcMatrix/man/assocSparse.Rd | 6 +-
qlcMatrix-0.9.4/qlcMatrix/man/bibles.Rd | 8 +--
qlcMatrix-0.9.4/qlcMatrix/man/corSparse.Rd | 22 ++++----
qlcMatrix-0.9.4/qlcMatrix/man/cosNominal.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/cosSparse.Rd | 14 ++---
qlcMatrix-0.9.4/qlcMatrix/man/huber.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/pwMatrix.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/qlcMatrix-package.Rd | 8 +--
qlcMatrix-0.9.4/qlcMatrix/man/rowMax.Rd | 10 +--
qlcMatrix-0.9.4/qlcMatrix/man/sim.nominal.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/sim.strings.Rd | 8 +--
qlcMatrix-0.9.4/qlcMatrix/man/sim.wordlist.Rd | 4 -
qlcMatrix-0.9.4/qlcMatrix/man/sim.words.Rd | 4 -
qlcMatrix-0.9.4/qlcMatrix/man/splitStrings.Rd | 6 +-
qlcMatrix-0.9.4/qlcMatrix/man/splitTable.Rd | 10 ++-
qlcMatrix-0.9.4/qlcMatrix/man/splitText.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/splitWordlist.Rd | 4 -
qlcMatrix-0.9.4/qlcMatrix/man/unfold.Rd | 2
qlcMatrix-0.9.4/qlcMatrix/man/wals.Rd | 8 +--
qlcMatrix-0.9.4/qlcMatrix/vignettes |only
32 files changed, 116 insertions(+), 93 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.5.1 dated 2015-01-21 and 1.5.4 dated 2015-04-27
Description: A general purpose toolbox for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multi-levels include within and between group statistics, including correlations and factor analysis. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
psych-1.5.1/psych/R/CTA_lrn.R |only
psych-1.5.1/psych/R/cosiner.R |only
psych-1.5.1/psych/R/cta.new.R |only
psych-1.5.1/psych/R/nearcor.r |only
psych-1.5.4/psych/DESCRIPTION | 10
psych-1.5.4/psych/MD5 | 177 +++++-----
psych-1.5.4/psych/NAMESPACE | 25 +
psych-1.5.4/psych/R/ICLUST.R | 17
psych-1.5.4/psych/R/biplot.psych.R | 14
psych-1.5.4/psych/R/cluster.plot.R | 14
psych-1.5.4/psych/R/cor.plot.R | 6
psych-1.5.4/psych/R/corr.test.R | 7
psych-1.5.4/psych/R/cosinor.R | 2
psych-1.5.4/psych/R/cta.15.R |only
psych-1.5.4/psych/R/cta.R | 2
psych-1.5.4/psych/R/describe.R | 12
psych-1.5.4/psych/R/df2latex.R | 108 ++++--
psych-1.5.4/psych/R/diagram.R | 10
psych-1.5.4/psych/R/error.bars.by.R | 8
psych-1.5.4/psych/R/fa.R | 27 +
psych-1.5.4/psych/R/fa.diagram.R | 17
psych-1.5.4/psych/R/fa.parallel.R | 314 ++++++++++++------
psych-1.5.4/psych/R/fa.parallel.poly.R | 2
psych-1.5.4/psych/R/faBy.R | 52 ++
psych-1.5.4/psych/R/factor.stats.R | 83 +++-
psych-1.5.4/psych/R/kappa.R | 29 +
psych-1.5.4/psych/R/mat.regress.R | 150 ++++----
psych-1.5.4/psych/R/mediate.r | 143 +++++---
psych-1.5.4/psych/R/misc.R | 73 ++--
psych-1.5.4/psych/R/mixed.cor.R | 11
psych-1.5.4/psych/R/pairs.panels.R | 469 ++++++++++++---------------
psych-1.5.4/psych/R/phi.R | 3
psych-1.5.4/psych/R/principal.R | 2
psych-1.5.4/psych/R/print.psych.R | 71 +++-
psych-1.5.4/psych/R/print.psych.fa.R | 9
psych-1.5.4/psych/R/schmid.R | 2
psych-1.5.4/psych/R/score.items.R | 12
psych-1.5.4/psych/R/scoreOverlap.r | 61 ++-
psych-1.5.4/psych/R/set.cor.R | 37 +-
psych-1.5.4/psych/R/sim.parallel.r | 12
psych-1.5.4/psych/R/sim.structural.R | 11
psych-1.5.4/psych/R/smc.R | 57 +++
psych-1.5.4/psych/R/splitHalf.R | 33 +
psych-1.5.4/psych/R/statsBy.r | 15
psych-1.5.4/psych/R/summary.psych.R | 11
psych-1.5.4/psych/R/target.rot.R | 1
psych-1.5.4/psych/R/test.all.R | 21 +
psych-1.5.4/psych/R/test.psych.r | 40 ++
psych-1.5.4/psych/inst/CITATION | 4
psych-1.5.4/psych/inst/NEWS.Rd | 63 +++
psych-1.5.4/psych/inst/doc/overview.R | 2
psych-1.5.4/psych/inst/doc/overview.Rnw | 4
psych-1.5.4/psych/inst/doc/overview.pdf |binary
psych-1.5.4/psych/inst/doc/psych_for_sem.pdf |binary
psych-1.5.4/psych/man/ICLUST.Rd | 8
psych-1.5.4/psych/man/ICLUST.graph.Rd | 6
psych-1.5.4/psych/man/ICLUST.rgraph.Rd | 6
psych-1.5.4/psych/man/VSS.Rd | 6
psych-1.5.4/psych/man/alpha.Rd | 2
psych-1.5.4/psych/man/best.scales.Rd | 36 --
psych-1.5.4/psych/man/blot.Rd | 2
psych-1.5.4/psych/man/cluster.loadings.Rd | 2
psych-1.5.4/psych/man/cluster.plot.Rd | 2
psych-1.5.4/psych/man/cor.plot.Rd | 6
psych-1.5.4/psych/man/corr.test.Rd | 7
psych-1.5.4/psych/man/cosinor.Rd | 162 +++++++--
psych-1.5.4/psych/man/cta.Rd | 37 +-
psych-1.5.4/psych/man/describe.Rd | 8
psych-1.5.4/psych/man/df2latex.Rd | 39 +-
psych-1.5.4/psych/man/diagram.Rd | 2
psych-1.5.4/psych/man/epi.Rd | 5
psych-1.5.4/psych/man/error.bars.by.Rd | 15
psych-1.5.4/psych/man/fa.Rd | 44 +-
psych-1.5.4/psych/man/fa.diagram.Rd | 6
psych-1.5.4/psych/man/fa.parallel.Rd | 38 +-
psych-1.5.4/psych/man/guttman.Rd | 10
psych-1.5.4/psych/man/kappa.Rd | 4
psych-1.5.4/psych/man/mediate.Rd | 27 +
psych-1.5.4/psych/man/misc.Rd | 17
psych-1.5.4/psych/man/mixed.cor.Rd | 4
psych-1.5.4/psych/man/msq.Rd | 61 ++-
psych-1.5.4/psych/man/omega.Rd | 51 +-
psych-1.5.4/psych/man/pairs.panels.Rd | 10
psych-1.5.4/psych/man/score.items.Rd | 13
psych-1.5.4/psych/man/set.cor.Rd | 5
psych-1.5.4/psych/man/sim.item.Rd | 2
psych-1.5.4/psych/man/sim.structural.Rd | 9
psych-1.5.4/psych/man/simulation.circ.Rd | 2
psych-1.5.4/psych/man/smc.Rd | 4
psych-1.5.4/psych/man/statsBy.Rd | 17
psych-1.5.4/psych/man/test.psych.Rd | 8
psych-1.5.4/psych/vignettes/overview.Rnw | 4
92 files changed, 1916 insertions(+), 1024 deletions(-)
Title: Visualization and Analysis Tools for Neural Networks
Diff between NeuralNetTools versions 1.0.1 dated 2015-01-28 and 1.3.1 dated 2015-04-27
More information about NeuralNetTools at CRAN
Description: Visualization and analysis tools to aid in the interpretation of
neural network models. Functions are available for plotting,
quantifying variable importance, conducting a sensitivity analysis, and
obtaining a simple list of model weights.
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck
DESCRIPTION | 10 -
MD5 | 30 +++--
NAMESPACE | 10 +
R/NeuralNetTools_gar.R | 266 +++++++++++++++++++++++------------------------
R/NeuralNetTools_lek.R | 2
R/NeuralNetTools_old.R |only
R/NeuralNetTools_plot.R | 12 +-
R/NeuralNetTools_utils.R | 75 ++++++++++++-
README.md | 93 +++++++++++++++-
inst |only
man/garson.Rd | 51 +++++----
man/lekprofile.Rd | 4
man/neuraldat.Rd | 2
man/neuralskips.Rd |only
man/neuralweights.Rd | 6 -
man/olden.Rd |only
man/plotnet.Rd | 4
man/pred_sens.Rd | 2
18 files changed, 379 insertions(+), 188 deletions(-)
Permanent link
Title: Loading System Fonts into R
Diff between sysfonts versions 0.4 dated 2015-01-12 and 0.5 dated 2015-04-27
Description: Using FreeType to load system fonts
and Google Fonts (https://www.google.com/fonts) into R.
It is supposed to support other packages such as 'R2SWF'
and 'showtext'.
Author: Yixuan Qiu and authors/contributors of the
included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu
DESCRIPTION | 14 +++++++-------
MD5 | 7 ++++---
NEWS | 10 ++++++++++
R/google.R | 29 ++++++++++++++++++++++++-----
inst/fonts/webfonts.bz2 |only
5 files changed, 45 insertions(+), 15 deletions(-)
Title: Sequential Parameter Optimization Toolbox
Diff between SPOT versions 1.0.4184 dated 2013-06-26 and 1.0.5543 dated 2015-04-27
Description: The Sequential Parameter Optimization Toolbox provides a set of tools for Parameter-tuning, based on modelling techniques, DoE and statistical methods.
Author: Thomas Bartz-Beielstein [aut],
Martin Zaefferer [cre, ctb],
Joerg Ziegenhirt [ctb],
Wolfgang Konen [ctb],
Oliver Flasch [ctb],
Patrick Koch [ctb],
Martina Friese [ctb]
Maintainer: Martin Zaefferer
SPOT-1.0.4184/SPOT/R/spotComparison.R |only
SPOT-1.0.4184/SPOT/R/spotExplainInterfaces.R |only
SPOT-1.0.4184/SPOT/man/spotAlgStart....Rd |only
SPOT-1.0.4184/SPOT/man/spotCompare.Rd |only
SPOT-1.0.4184/SPOT/man/spotCreateDesign....Rd |only
SPOT-1.0.4184/SPOT/man/spotHelpInterfaces....Rd |only
SPOT-1.0.4184/SPOT/man/spotOcbaTest.Rd |only
SPOT-1.0.4184/SPOT/man/spotPlotPower.Rd |only
SPOT-1.0.4184/SPOT/man/spotPlotSeverity.Rd |only
SPOT-1.0.4184/SPOT/man/spotPower.Rd |only
SPOT-1.0.4184/SPOT/man/spotPredict....Rd |only
SPOT-1.0.4184/SPOT/man/spotPrepareSystem.Rd |only
SPOT-1.0.4184/SPOT/man/spotSeverity.Rd |only
SPOT-1.0.5543/SPOT/DESCRIPTION | 86 -
SPOT-1.0.5543/SPOT/MD5 | 630 ++++++-------
SPOT-1.0.5543/SPOT/NAMESPACE | 41
SPOT-1.0.5543/SPOT/NEWS | 41
SPOT-1.0.5543/SPOT/R/sms_emoa.r | 142 +-
SPOT-1.0.5543/SPOT/R/spot.R | 101 +-
SPOT-1.0.5543/SPOT/R/spotAlgStartEs.R | 74 -
SPOT-1.0.5543/SPOT/R/spotAlgStartEsGlg.R | 12
SPOT-1.0.5543/SPOT/R/spotAlgStartRgp.R | 8
SPOT-1.0.5543/SPOT/R/spotAlgStartSmsEmoaGlg.R | 4
SPOT-1.0.5543/SPOT/R/spotCreateDesignBasicDoe.R | 4
SPOT-1.0.5543/SPOT/R/spotCreateDesignFactors.R | 9
SPOT-1.0.5543/SPOT/R/spotCreateDesignFrF2.R | 14
SPOT-1.0.5543/SPOT/R/spotCreateDesignLhd.R | 94 +
SPOT-1.0.5543/SPOT/R/spotCreateDesignLhs.R | 2
SPOT-1.0.5543/SPOT/R/spotCreateDesignLhsOpt.R | 2
SPOT-1.0.5543/SPOT/R/spotEnsembleFunctions.R | 28
SPOT-1.0.5543/SPOT/R/spotEnsembleSingleBLAbern.R | 2
SPOT-1.0.5543/SPOT/R/spotExpectedImprovement.R | 28
SPOT-1.0.5543/SPOT/R/spotFuncStartBranin.R | 3
SPOT-1.0.5543/SPOT/R/spotFuncStartMexicanHat.R | 3
SPOT-1.0.5543/SPOT/R/spotFuncStartRastrigin.R | 3
SPOT-1.0.5543/SPOT/R/spotFuncStartRosenbrock.R | 4
SPOT-1.0.5543/SPOT/R/spotFuncStartSixHump.R | 51 -
SPOT-1.0.5543/SPOT/R/spotFuncStartSphere.R | 5
SPOT-1.0.5543/SPOT/R/spotFuncTools.R | 202 ++--
SPOT-1.0.5543/SPOT/R/spotGenerateSequentialDesign.R | 45
SPOT-1.0.5543/SPOT/R/spotGetOptions.R | 35
SPOT-1.0.5543/SPOT/R/spotHelpFunctions.R | 4
SPOT-1.0.5543/SPOT/R/spotMcoSort.R | 20
SPOT-1.0.5543/SPOT/R/spotModelOptim.R | 51 -
SPOT-1.0.5543/SPOT/R/spotModelParetoOptim.R | 54 -
SPOT-1.0.5543/SPOT/R/spotModelSelection.R | 12
SPOT-1.0.5543/SPOT/R/spotOcba.R | 178 +--
SPOT-1.0.5543/SPOT/R/spotOptimEs.R | 26
SPOT-1.0.5543/SPOT/R/spotOptimizationFunctions.R | 52 -
SPOT-1.0.5543/SPOT/R/spotPlot.R | 9
SPOT-1.0.5543/SPOT/R/spotPredictCoForrester.R | 364 +++----
SPOT-1.0.5543/SPOT/R/spotPredictDace.R | 234 +---
SPOT-1.0.5543/SPOT/R/spotPredictDice.R | 10
SPOT-1.0.5543/SPOT/R/spotPredictEarth.R | 13
SPOT-1.0.5543/SPOT/R/spotPredictEnsembleMultiAlternate.R | 3
SPOT-1.0.5543/SPOT/R/spotPredictEnsembleMultiRank.R | 5
SPOT-1.0.5543/SPOT/R/spotPredictEsvm.R | 14
SPOT-1.0.5543/SPOT/R/spotPredictForrester.R | 439 ++++-----
SPOT-1.0.5543/SPOT/R/spotPredictGausspr.R | 6
SPOT-1.0.5543/SPOT/R/spotPredictHelpFunctions.R | 22
SPOT-1.0.5543/SPOT/R/spotPredictKrig.R | 5
SPOT-1.0.5543/SPOT/R/spotPredictKsvm.R | 19
SPOT-1.0.5543/SPOT/R/spotPredictLm.R | 17
SPOT-1.0.5543/SPOT/R/spotPredictLmFactor.R | 24
SPOT-1.0.5543/SPOT/R/spotPredictMCO.R | 11
SPOT-1.0.5543/SPOT/R/spotPredictMLP.R | 26
SPOT-1.0.5543/SPOT/R/spotPredictMlegp.R | 24
SPOT-1.0.5543/SPOT/R/spotPredictNeuralnet.R |only
SPOT-1.0.5543/SPOT/R/spotPredictQrnn.R | 10
SPOT-1.0.5543/SPOT/R/spotPredictRandomForest.R | 2
SPOT-1.0.5543/SPOT/R/spotPredictTgp.R | 7
SPOT-1.0.5543/SPOT/R/spotPredictTree.R | 7
SPOT-1.0.5543/SPOT/R/spotPrepareData.R | 14
SPOT-1.0.5543/SPOT/R/spotRepairMissingValues.R |only
SPOT-1.0.5543/SPOT/R/spotRepeats.R | 66 -
SPOT-1.0.5543/SPOT/R/spotReport3d.R | 17
SPOT-1.0.5543/SPOT/R/spotReportContour.R | 7
SPOT-1.0.5543/SPOT/R/spotReportDefault.R | 4
SPOT-1.0.5543/SPOT/R/spotReportEarth.R | 4
SPOT-1.0.5543/SPOT/R/spotReportMAMP.R | 86 -
SPOT-1.0.5543/SPOT/R/spotReportSAMP.R | 30
SPOT-1.0.5543/SPOT/R/spotReportSens.R | 7
SPOT-1.0.5543/SPOT/R/spotStatistics.R | 4
SPOT-1.0.5543/SPOT/R/spotSurf.R | 40
SPOT-1.0.5543/SPOT/R/spotTargetFunctions.R | 16
SPOT-1.0.5543/SPOT/demo/00Index | 1
SPOT-1.0.5543/SPOT/demo/spotDemo23RgpKtfg.R |only
SPOT-1.0.5543/SPOT/inst/demo23RgpKtfg |only
SPOT-1.0.5543/SPOT/inst/doc/SPOT.pdf |binary
SPOT-1.0.5543/SPOT/inst/doc/index.html | 2
SPOT-1.0.5543/SPOT/java |only
SPOT-1.0.5543/SPOT/man/SPOT-package.Rd | 55 -
SPOT-1.0.5543/SPOT/man/Testfunctions.Rd | 76 -
SPOT-1.0.5543/SPOT/man/corrcubic.Rd | 40
SPOT-1.0.5543/SPOT/man/correxp.Rd | 40
SPOT-1.0.5543/SPOT/man/correxpg.Rd | 41
SPOT-1.0.5543/SPOT/man/corrgauss.Rd | 40
SPOT-1.0.5543/SPOT/man/corrkriging.Rd | 38
SPOT-1.0.5543/SPOT/man/corrlin.Rd | 40
SPOT-1.0.5543/SPOT/man/corrnoisygauss.Rd | 38
SPOT-1.0.5543/SPOT/man/corrnoisykriging.Rd | 38
SPOT-1.0.5543/SPOT/man/corrspherical.Rd | 40
SPOT-1.0.5543/SPOT/man/corrspline.Rd | 40
SPOT-1.0.5543/SPOT/man/daceBuilder.Rd | 110 --
SPOT-1.0.5543/SPOT/man/daceEvalFit.Rd | 18
SPOT-1.0.5543/SPOT/man/daceFixTheta.Rd | 44
SPOT-1.0.5543/SPOT/man/daceGetFit.Rd | 52 -
SPOT-1.0.5543/SPOT/man/daceLikelihood.Rd | 20
SPOT-1.0.5543/SPOT/man/daceObjfunc.Rd | 49 -
SPOT-1.0.5543/SPOT/man/dacePredictor.Rd | 67 -
SPOT-1.0.5543/SPOT/man/dacePrepareFit.Rd | 44
SPOT-1.0.5543/SPOT/man/daceStartParameters.Rd | 42
SPOT-1.0.5543/SPOT/man/forrBuilder.Rd | 119 --
SPOT-1.0.5543/SPOT/man/forrCoBuilder.Rd | 137 +-
SPOT-1.0.5543/SPOT/man/forrCoLikelihood.Rd | 40
SPOT-1.0.5543/SPOT/man/forrCoModel.Rd | 21
SPOT-1.0.5543/SPOT/man/forrCoRegPredictor.Rd | 31
SPOT-1.0.5543/SPOT/man/forrIF.Rd | 10
SPOT-1.0.5543/SPOT/man/forrRegLikelihood.Rd | 28
SPOT-1.0.5543/SPOT/man/forrRegPredictor.Rd | 41
SPOT-1.0.5543/SPOT/man/forrReintPredictor.Rd | 41
SPOT-1.0.5543/SPOT/man/predict.forr.Rd |only
SPOT-1.0.5543/SPOT/man/print.Rd | 28
SPOT-1.0.5543/SPOT/man/regpoly0.Rd | 28
SPOT-1.0.5543/SPOT/man/regpoly1.Rd | 31
SPOT-1.0.5543/SPOT/man/regpoly2.Rd | 30
SPOT-1.0.5543/SPOT/man/repmat.Rd | 15
SPOT-1.0.5543/SPOT/man/spot.Rd | 82 -
SPOT-1.0.5543/SPOT/man/spotAlgEs.Rd | 105 --
SPOT-1.0.5543/SPOT/man/spotAlgEsDominantReco.Rd | 22
SPOT-1.0.5543/SPOT/man/spotAlgEsGetSuccessRate.Rd | 16
SPOT-1.0.5543/SPOT/man/spotAlgEsHps.Rd | 17
SPOT-1.0.5543/SPOT/man/spotAlgEsIndividualInitial.Rd | 37
SPOT-1.0.5543/SPOT/man/spotAlgEsInitParentPop.Rd | 37
SPOT-1.0.5543/SPOT/man/spotAlgEsInterReco.Rd | 22
SPOT-1.0.5543/SPOT/man/spotAlgEsInterRecoBeSw02.Rd | 18
SPOT-1.0.5543/SPOT/man/spotAlgEsMarriage.Rd | 16
SPOT-1.0.5543/SPOT/man/spotAlgEsMarriageWithReplace.Rd | 17
SPOT-1.0.5543/SPOT/man/spotAlgEsObjMutation.Rd | 10
SPOT-1.0.5543/SPOT/man/spotAlgEsQuickTest.Rd | 31
SPOT-1.0.5543/SPOT/man/spotAlgEsSelection.Rd | 19
SPOT-1.0.5543/SPOT/man/spotAlgEsStratMutation.Rd | 25
SPOT-1.0.5543/SPOT/man/spotAlgEsTermination.Rd | 34
SPOT-1.0.5543/SPOT/man/spotAlgStartEs.Rd | 42
SPOT-1.0.5543/SPOT/man/spotAlgStartEsGlg.Rd | 43
SPOT-1.0.5543/SPOT/man/spotAlgStartEsVar.Rd | 48
SPOT-1.0.5543/SPOT/man/spotAlgStartRgp.Rd | 40
SPOT-1.0.5543/SPOT/man/spotAlgStartSann.Rd | 46
SPOT-1.0.5543/SPOT/man/spotAlgStartSannVar.Rd | 52 -
SPOT-1.0.5543/SPOT/man/spotAlgStartSmsEmoaGlg.Rd | 43
SPOT-1.0.5543/SPOT/man/spotCalcNoise.Rd | 24
SPOT-1.0.5543/SPOT/man/spotCallCoFunction.Rd | 26
SPOT-1.0.5543/SPOT/man/spotCodeFormulas.Rd | 20
SPOT-1.0.5543/SPOT/man/spotCreateDesignBasicDoe.Rd | 39
SPOT-1.0.5543/SPOT/man/spotCreateDesignFactors.Rd | 29
SPOT-1.0.5543/SPOT/man/spotCreateDesignFrF2.Rd | 33
SPOT-1.0.5543/SPOT/man/spotCreateDesignLhd.Rd | 37
SPOT-1.0.5543/SPOT/man/spotCreateDesignLhs.Rd | 29
SPOT-1.0.5543/SPOT/man/spotCreateDesignLhsOpt.Rd | 29
SPOT-1.0.5543/SPOT/man/spotEnsembleMinimum.Rd | 11
SPOT-1.0.5543/SPOT/man/spotEnsembleModelBuilding.Rd | 25
SPOT-1.0.5543/SPOT/man/spotEnsembleModelEvaluate.Rd | 21
SPOT-1.0.5543/SPOT/man/spotEnsembleMultiAlternate.Rd | 84 -
SPOT-1.0.5543/SPOT/man/spotEnsembleMultiAverage.Rd | 90 -
SPOT-1.0.5543/SPOT/man/spotEnsembleMultiChoose.Rd | 89 -
SPOT-1.0.5543/SPOT/man/spotEnsembleMultiRank.Rd | 74 -
SPOT-1.0.5543/SPOT/man/spotEnsembleMultiRankWeighted.Rd | 72 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleBLAbern.Rd | 78 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleBLAnorm.Rd | 78 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleEpsGreedy.Rd | 84 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSinglePOKER.Rd | 91 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleRoundSearch.Rd | 79 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleSoftMax.Rd | 94 -
SPOT-1.0.5543/SPOT/man/spotEnsembleSingleUCB1.Rd | 83 -
SPOT-1.0.5543/SPOT/man/spotEnsembleStatsMin.Rd | 12
SPOT-1.0.5543/SPOT/man/spotEnsembleStatsSd.Rd | 12
SPOT-1.0.5543/SPOT/man/spotEnsembleSubdesigns.Rd | 26
SPOT-1.0.5543/SPOT/man/spotEnsembleSummedRank.Rd | 14
SPOT-1.0.5543/SPOT/man/spotEnsembleSummedRankWeighted.Rd | 16
SPOT-1.0.5543/SPOT/man/spotExiPsi.Rd | 14
SPOT-1.0.5543/SPOT/man/spotFeedback.Rd | 84 -
SPOT-1.0.5543/SPOT/man/spotForceFactorDesign.Rd | 20
SPOT-1.0.5543/SPOT/man/spotForceFactorX.Rd | 18
SPOT-1.0.5543/SPOT/man/spotFuncStartBranin.Rd | 36
SPOT-1.0.5543/SPOT/man/spotFuncStartDisBranin.Rd | 36
SPOT-1.0.5543/SPOT/man/spotFuncStartMexicanHat.Rd | 36
SPOT-1.0.5543/SPOT/man/spotFuncStartRastrigin.Rd | 38
SPOT-1.0.5543/SPOT/man/spotFuncStartRosenbrock.Rd | 36
SPOT-1.0.5543/SPOT/man/spotFuncStartSixHump.Rd | 38
SPOT-1.0.5543/SPOT/man/spotFuncStartSphere.Rd | 36
SPOT-1.0.5543/SPOT/man/spotGenerateSequentialDesign.Rd | 31
SPOT-1.0.5543/SPOT/man/spotGetAllRepeats.Rd | 12
SPOT-1.0.5543/SPOT/man/spotGetMergedDataMatrixB.Rd | 31
SPOT-1.0.5543/SPOT/man/spotGetOptions.Rd | 263 +----
SPOT-1.0.5543/SPOT/man/spotGetRawDataMatrixB.Rd | 32
SPOT-1.0.5543/SPOT/man/spotGetRawResData.Rd | 26
SPOT-1.0.5543/SPOT/man/spotGetRepeats.Rd | 16
SPOT-1.0.5543/SPOT/man/spotGlgCore.Rd | 34
SPOT-1.0.5543/SPOT/man/spotGlgCreate.Rd | 65 -
SPOT-1.0.5543/SPOT/man/spotGlgCreateN.Rd | 68 -
SPOT-1.0.5543/SPOT/man/spotGlgCreateRot.Rd | 63 -
SPOT-1.0.5543/SPOT/man/spotGlgCreateRotSearched.Rd | 64 -
SPOT-1.0.5543/SPOT/man/spotGlgEval.Rd | 35
SPOT-1.0.5543/SPOT/man/spotGlgEvalN.Rd | 33
SPOT-1.0.5543/SPOT/man/spotGlgEvalRot.Rd | 34
SPOT-1.0.5543/SPOT/man/spotGlgInit.Rd | 72 -
SPOT-1.0.5543/SPOT/man/spotGlgInitN.Rd | 74 -
SPOT-1.0.5543/SPOT/man/spotGui.Rd | 14
SPOT-1.0.5543/SPOT/man/spotHelpBslash.Rd | 13
SPOT-1.0.5543/SPOT/man/spotHlpF.norm.Rd | 13
SPOT-1.0.5543/SPOT/man/spotHlpF.norminv.Rd | 14
SPOT-1.0.5543/SPOT/man/spotInfillExpImp.Rd | 19
SPOT-1.0.5543/SPOT/man/spotInfillHyperVolume.Rd | 22
SPOT-1.0.5543/SPOT/man/spotInfillLcbHyperVolume.Rd | 41
SPOT-1.0.5543/SPOT/man/spotInfillLcbMulti.Rd | 19
SPOT-1.0.5543/SPOT/man/spotInfillLcbSingle.Rd | 14
SPOT-1.0.5543/SPOT/man/spotInfillProbImp.Rd | 20
SPOT-1.0.5543/SPOT/man/spotInfillSD.Rd | 17
SPOT-1.0.5543/SPOT/man/spotInfillSExI2d.Rd | 36
SPOT-1.0.5543/SPOT/man/spotInitializePredictor.Rd | 38
SPOT-1.0.5543/SPOT/man/spotInstAndLoadPackages.Rd | 32
SPOT-1.0.5543/SPOT/man/spotInvChisq.Rd | 14
SPOT-1.0.5543/SPOT/man/spotMcoCrowdTournament.Rd | 23
SPOT-1.0.5543/SPOT/man/spotMcoSelectionHypervol.Rd | 50 -
SPOT-1.0.5543/SPOT/man/spotMcoSort.Rd | 29
SPOT-1.0.5543/SPOT/man/spotMcoTournament.Rd | 22
SPOT-1.0.5543/SPOT/man/spotMetaFlattenFbsRow.Rd | 17
SPOT-1.0.5543/SPOT/man/spotModel.func.Rd | 35
SPOT-1.0.5543/SPOT/man/spotModel.predict.Rd | 26
SPOT-1.0.5543/SPOT/man/spotModel.train.Rd | 36
SPOT-1.0.5543/SPOT/man/spotModelDescentLm.Rd | 24
SPOT-1.0.5543/SPOT/man/spotModelOptim.Rd | 101 --
SPOT-1.0.5543/SPOT/man/spotModelParetoOptim.Rd | 43
SPOT-1.0.5543/SPOT/man/spotNormDesign.Rd | 34
SPOT-1.0.5543/SPOT/man/spotNormalizeMatrix.Rd | 23
SPOT-1.0.5543/SPOT/man/spotNormalizeMatrix2.Rd | 27
SPOT-1.0.5543/SPOT/man/spotOcba.Rd | 26
SPOT-1.0.5543/SPOT/man/spotOptim.Rd | 85 -
SPOT-1.0.5543/SPOT/man/spotOptimEs.Rd | 119 +-
SPOT-1.0.5543/SPOT/man/spotOptimInterface.Rd | 54 -
SPOT-1.0.5543/SPOT/man/spotOptimLHS.Rd | 55 -
SPOT-1.0.5543/SPOT/man/spotOptimizationInterface.Rd | 137 +-
SPOT-1.0.5543/SPOT/man/spotOptimizationInterfaceMco.Rd | 81 -
SPOT-1.0.5543/SPOT/man/spotParetoOptMulti.Rd | 10
SPOT-1.0.5543/SPOT/man/spotPenalizeMissingValues.Rd |only
SPOT-1.0.5543/SPOT/man/spotPlotBst.Rd | 19
SPOT-1.0.5543/SPOT/man/spotPredictCoForrester.Rd | 97 --
SPOT-1.0.5543/SPOT/man/spotPredictDace.Rd | 91 -
SPOT-1.0.5543/SPOT/man/spotPredictDice.Rd | 39
SPOT-1.0.5543/SPOT/man/spotPredictEarth.Rd | 60 -
SPOT-1.0.5543/SPOT/man/spotPredictEsvm.Rd | 36
SPOT-1.0.5543/SPOT/man/spotPredictForrester.Rd | 85 -
SPOT-1.0.5543/SPOT/man/spotPredictGausspr.Rd | 35
SPOT-1.0.5543/SPOT/man/spotPredictKrig.Rd | 34
SPOT-1.0.5543/SPOT/man/spotPredictKsvm.Rd | 36
SPOT-1.0.5543/SPOT/man/spotPredictLm.Rd | 46
SPOT-1.0.5543/SPOT/man/spotPredictLmFactor.Rd | 55 -
SPOT-1.0.5543/SPOT/man/spotPredictMCO.Rd | 65 -
SPOT-1.0.5543/SPOT/man/spotPredictMLP.Rd | 35
SPOT-1.0.5543/SPOT/man/spotPredictMlegp.Rd | 59 -
SPOT-1.0.5543/SPOT/man/spotPredictNeuralnet.Rd |only
SPOT-1.0.5543/SPOT/man/spotPredictOptMulti.Rd | 10
SPOT-1.0.5543/SPOT/man/spotPredictQrnn.Rd | 35
SPOT-1.0.5543/SPOT/man/spotPredictRandomForest.Rd | 58 -
SPOT-1.0.5543/SPOT/man/spotPredictRandomForestMlegp.Rd | 38
SPOT-1.0.5543/SPOT/man/spotPredictTest.Rd | 37
SPOT-1.0.5543/SPOT/man/spotPredictTgp.Rd | 37
SPOT-1.0.5543/SPOT/man/spotPredictTree.Rd | 37
SPOT-1.0.5543/SPOT/man/spotPrepare.Rd | 39
SPOT-1.0.5543/SPOT/man/spotPrepareData.Rd | 46
SPOT-1.0.5543/SPOT/man/spotPrepareDataAsMatrixC.Rd | 28
SPOT-1.0.5543/SPOT/man/spotPrepareResult.Rd |only
SPOT-1.0.5543/SPOT/man/spotPrint.Rd | 19
SPOT-1.0.5543/SPOT/man/spotROI.Rd | 31
SPOT-1.0.5543/SPOT/man/spotReadBstFile.Rd | 26
SPOT-1.0.5543/SPOT/man/spotReadRoi.Rd | 18
SPOT-1.0.5543/SPOT/man/spotRepairMissingValues.Rd |only
SPOT-1.0.5543/SPOT/man/spotRepairMissingValuesCoKriging.Rd |only
SPOT-1.0.5543/SPOT/man/spotRepeats.Rd | 17
SPOT-1.0.5543/SPOT/man/spotRepeatsOcba.Rd | 18
SPOT-1.0.5543/SPOT/man/spotReport3d.Rd | 50 -
SPOT-1.0.5543/SPOT/man/spotReport3dMulti.Rd | 42
SPOT-1.0.5543/SPOT/man/spotReportContour.Rd | 50 -
SPOT-1.0.5543/SPOT/man/spotReportContourMulti.Rd | 29
SPOT-1.0.5543/SPOT/man/spotReportDefault.Rd | 40
SPOT-1.0.5543/SPOT/man/spotReportEarth.Rd | 16
SPOT-1.0.5543/SPOT/man/spotReportMAMP.Rd | 20
SPOT-1.0.5543/SPOT/man/spotReportMetaDefault.Rd | 28
SPOT-1.0.5543/SPOT/man/spotReportSAMP.Rd | 20
SPOT-1.0.5543/SPOT/man/spotReportSens.Rd | 20
SPOT-1.0.5543/SPOT/man/spotReportSensY.Rd | 19
SPOT-1.0.5543/SPOT/man/spotReverseNormalizeMatrix.Rd | 24
SPOT-1.0.5543/SPOT/man/spotRgpTargetFunction.Rd | 27
SPOT-1.0.5543/SPOT/man/spotSExI2d.Rd | 47
SPOT-1.0.5543/SPOT/man/spotSelectionCriteria.Rd | 53 -
SPOT-1.0.5543/SPOT/man/spotSeqDesignIncreaseMultTwo.Rd | 20
SPOT-1.0.5543/SPOT/man/spotSeqDesignIncreasePlusOne.Rd | 20
SPOT-1.0.5543/SPOT/man/spotSmsEmoa.Rd | 43
SPOT-1.0.5543/SPOT/man/spotSmsEmoaKriging.Rd | 38
SPOT-1.0.5543/SPOT/man/spotStepAutoOpt.Rd | 36
SPOT-1.0.5543/SPOT/man/spotStepInitial.Rd | 42
SPOT-1.0.5543/SPOT/man/spotStepMetaOpt.Rd | 26
SPOT-1.0.5543/SPOT/man/spotStepReport.Rd | 26
SPOT-1.0.5543/SPOT/man/spotStepRunAlg.Rd | 47
SPOT-1.0.5543/SPOT/man/spotStepSequential.Rd | 30
SPOT-1.0.5543/SPOT/man/spotSurf3d.Rd | 36
SPOT-1.0.5543/SPOT/man/spotSurfContour.Rd | 64 -
SPOT-1.0.5543/SPOT/man/spotVersion.Rd | 11
SPOT-1.0.5543/SPOT/man/spotWriteAroi.Rd | 22
SPOT-1.0.5543/SPOT/man/spotWriteBest.Rd | 33
SPOT-1.0.5543/SPOT/man/spotWriteDes.Rd | 24
SPOT-1.0.5543/SPOT/man/spotWriteLines.Rd | 23
SPOT-1.0.5543/SPOT/man/spotWriteRes.Rd |only
SPOT-1.0.5543/SPOT/man/spotWriteRoiFileForRepeats.Rd | 15
SPOT-1.0.5543/SPOT/vignettes/SPOT.Rnw | 2
315 files changed, 5270 insertions(+), 7219 deletions(-)
Title: Using Fonts More Easily in R Graphs
Diff between showtext versions 0.3 dated 2015-03-11 and 0.4-1 dated 2015-04-27
Description: Making it easy to use various types of fonts
(TrueType, OpenType, Type 1, web fonts, etc.) in R graphs, and
supporting most output formats of R graphics including PNG, PDF and
SVG. Text glyphs will be converted into polygons or raster images,
hence after the plot has been created, it no longer relies on the font files.
No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu
DESCRIPTION | 12 +-
MD5 | 36 +++---
NAMESPACE | 2
R/showtext.R | 261 ++++++++++++++++++++++++++++++++++++++---------
R/zzz.R | 15 ++
README.md | 272 +++++++++++++++++++++++++++++++++++---------------
inst/NEWS.Rd | 21 +++
man/showtext.auto.Rd |only
man/showtext.begin.Rd | 83 ++++++---------
man/showtext.end.Rd | 6 -
man/showtext.opts.Rd |only
src/devfuns.c | 79 ++++++++++----
src/devfuns.h |only
src/fonts.c |only
src/fonts.h | 21 +++
src/outline.c | 35 ------
src/outline.h | 66 ++++--------
src/raster.c |only
src/raster.h |only
src/showtext.c | 17 +--
src/util.c | 140 +++++--------------------
src/util.h | 27 ++++
22 files changed, 674 insertions(+), 419 deletions(-)
Title: Prediction of Therapeutic Success
Diff between EffectTreat versions 0.1-1 dated 2014-12-11 and 0.1-11 dated 2015-04-27
Description: In personalized medicine, one wants to know, for a given patient and his or her outcome for a predictor (pre-treatment variable), how likely it is that a treatment will be more beneficial than an alternative treatment. This package allows for the quantification of the predictive causal association (i.e., the association between the predictor variable and the individual causal effect of the treatment) and related metrics. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NAMESPACE | 9 +++++++++
NEWS | 3 +++
man/Example.Data.Rd | 2 +-
5 files changed, 22 insertions(+), 10 deletions(-)
Title: Full Interactive GUI for Dynamic Biplot in R
Diff between dynBiplotGUI versions 1.1.2 dated 2014-12-10 and 1.1.3 dated 2015-04-27
Description: A GUI to solve dynamic biplots and classical biplot. Try matrices of 2-way and 3-way. The GUI can be run in multiple languages.
Author: Jaime Egido [aut, cre]
Maintainer: Jaime Egido
ChangeLog | 15 +
DESCRIPTION | 10
MD5 | 16 -
R/dynBiplot.R | 529 ++++++++++++++++++++------------------------
inst/lang/Language.csv | 4
man/dynBiplot.Rd | 8
man/dynBiplotGUI-package.Rd | 6
man/panelFormat_en.Rd | 1
man/panelFormat_es.Rd | 1
9 files changed, 293 insertions(+), 297 deletions(-)
Title: Cox-Type Models for Interval-Censored Data
Diff between coxinterval versions 1.0 dated 2014-07-20 and 1.1 dated 2015-04-27
Description: Fits Cox-type models based on interval-censored data from a survival
or illness-death process.
Author: Audrey Boruvka and Richard J. Cook
Maintainer: Audrey Boruvka
coxinterval-1.0/coxinterval/R/coxaalenic.R |only
coxinterval-1.0/coxinterval/R/coxaalenic.control.R |only
coxinterval-1.0/coxinterval/R/coxaalenic.ineq.R |only
coxinterval-1.0/coxinterval/R/coxic.R |only
coxinterval-1.0/coxinterval/R/coxic.control.R |only
coxinterval-1.0/coxinterval/R/coxic.data.R |only
coxinterval-1.0/coxinterval/R/na.coxic.R |only
coxinterval-1.0/coxinterval/man/coxaalenic.Rd |only
coxinterval-1.0/coxinterval/man/coxaalenic.control.Rd |only
coxinterval-1.0/coxinterval/man/coxic.Rd |only
coxinterval-1.0/coxinterval/man/coxic.control.Rd |only
coxinterval-1.0/coxinterval/src/coxaalenic.c |only
coxinterval-1.0/coxinterval/src/coxic.c |only
coxinterval-1.1/coxinterval/DESCRIPTION | 21 ++-
coxinterval-1.1/coxinterval/INSTALL | 38 ++++--
coxinterval-1.1/coxinterval/MD5 | 77 +++++++-------
coxinterval-1.1/coxinterval/NAMESPACE | 23 ++--
coxinterval-1.1/coxinterval/NEWS |only
coxinterval-1.1/coxinterval/R/const2lin.R | 3
coxinterval-1.1/coxinterval/R/coxaalen.R |only
coxinterval-1.1/coxinterval/R/coxaalen.control.R |only
coxinterval-1.1/coxinterval/R/coxaalen.ineq.R |only
coxinterval-1.1/coxinterval/R/coxdual.R |only
coxinterval-1.1/coxinterval/R/coxdual.control.R |only
coxinterval-1.1/coxinterval/R/coxdual.data.R |only
coxinterval-1.1/coxinterval/R/jump2step.R | 3
coxinterval-1.1/coxinterval/R/lin2const.R | 3
coxinterval-1.1/coxinterval/R/maximalint.R | 15 --
coxinterval-1.1/coxinterval/R/na.coxdual.R |only
coxinterval-1.1/coxinterval/R/print.coxinterval.R | 9 +
coxinterval-1.1/coxinterval/R/print.summary.coxinterval.R | 6 -
coxinterval-1.1/coxinterval/R/step2jump.R | 3
coxinterval-1.1/coxinterval/R/step2stepfun.R |only
coxinterval-1.1/coxinterval/R/summary.coxinterval.R | 8 -
coxinterval-1.1/coxinterval/man/const2lin.Rd |only
coxinterval-1.1/coxinterval/man/cosmesis.Rd | 1
coxinterval-1.1/coxinterval/man/coxaalen.Rd |only
coxinterval-1.1/coxinterval/man/coxaalen.control.Rd |only
coxinterval-1.1/coxinterval/man/coxdual.Rd |only
coxinterval-1.1/coxinterval/man/coxdual.control.Rd |only
coxinterval-1.1/coxinterval/man/dualic.Rd | 10 -
coxinterval-1.1/coxinterval/man/dualrc.Rd | 6 -
coxinterval-1.1/coxinterval/man/jump2step.Rd |only
coxinterval-1.1/coxinterval/man/lin2const.Rd |only
coxinterval-1.1/coxinterval/man/linapprox.Rd |only
coxinterval-1.1/coxinterval/man/maximalint.Rd |only
coxinterval-1.1/coxinterval/man/print.coxinterval.Rd | 2
coxinterval-1.1/coxinterval/man/step2jump.Rd |only
coxinterval-1.1/coxinterval/man/step2stepfun.Rd |only
coxinterval-1.1/coxinterval/man/summary.coxinterval.Rd | 10 -
coxinterval-1.1/coxinterval/man/trans.Rd | 6 -
coxinterval-1.1/coxinterval/src/Makevars | 8 -
coxinterval-1.1/coxinterval/src/Makevars.win | 16 +-
coxinterval-1.1/coxinterval/src/coxaalen.c |only
coxinterval-1.1/coxinterval/src/coxdual.c |only
coxinterval-1.1/coxinterval/src/coxinterval.h | 3
coxinterval-1.1/coxinterval/src/rcplex.c | 1
57 files changed, 142 insertions(+), 130 deletions(-)
Title: Seismic Reflection and Scattering Coefficients
Diff between zoeppritz versions 1.0-4 dated 2013-03-13 and 1.0-5 dated 2015-04-27
Description: Calculate and plot scattering matrix coefficients for plane waves at interface.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 19 +++++++++----------
MD5 | 4 ++--
man/pzoeppritz.Rd | 16 +++++++++++-----
3 files changed, 22 insertions(+), 17 deletions(-)
Title: Statistical Analysis for Environmental Data
Diff between StatDA versions 1.6.7 dated 2013-08-22 and 1.6.9 dated 2015-04-27
Description: This package offers different possibilities to make statistical analysis for Environmental Data.
Author: Peter Filzmoser
Maintainer: Peter Filzmoser
DESCRIPTION | 8 +++---
MD5 | 54 +++++++++++++++++++++++----------------------
R/SymbLegend.R | 6 +++--
build |only
data/AuNEW.rda |binary
data/AuOLD.rda |binary
data/CHorANADUP.rda |binary
data/CHorFieldDUP.rda |binary
data/CHorSTANDARD.rda |binary
data/bhorizon.rda |binary
data/bordersKola.rda |binary
data/chorizon.rda |binary
data/kola.background.rda |binary
data/monch.rda |binary
data/moss.rda |binary
data/nizap.rda |binary
data/ohorizon.rda |binary
data/res.eyefit.As_C.rda |binary
data/res.eyefit.As_C_m.rda |binary
data/res.eyefit.AuNEW.rda |binary
data/res.eyefit.Ca_C.rda |binary
data/res.eyefit.Ca_O.rda |binary
data/res.eyefit.Hg_O.rda |binary
data/res.eyefit.Pb_O1.rda |binary
data/res.eyefit.Pb_O2.rda |binary
data/timetrend.rda |binary
data/topsoil.rda |binary
inst/doc/StatDA.R |only
man/plotelement.Rd | 2 -
29 files changed, 37 insertions(+), 33 deletions(-)
Title: Visualization for Seismic Tomography
Diff between RTOMO versions 1.1-2 dated 2014-01-06 and 1.1-3 dated 2015-04-27
Description: Aimed at seismic tomography, the package
plots tomographic images, and allows one to interact and query
three-dimensional tomographic models.
Vertical cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RTOMO-1.1-2/RTOMO/R/TOMO.colors.R |only
RTOMO-1.1-2/RTOMO/man/TOMO.colors.Rd |only
RTOMO-1.1-3/RTOMO/DESCRIPTION | 12 ++++-----
RTOMO-1.1-3/RTOMO/MD5 | 40 ++++++++++++++++++---------------
RTOMO-1.1-3/RTOMO/R/FANCY.TOMO.R | 2 -
RTOMO-1.1-3/RTOMO/R/HOZscale.R |only
RTOMO-1.1-3/RTOMO/R/PLOT.TOMOXSEC.R | 6 ++--
RTOMO-1.1-3/RTOMO/R/SHOWTOMO.R | 4 +--
RTOMO-1.1-3/RTOMO/R/TOMO3D.drive.R | 8 +++---
RTOMO-1.1-3/RTOMO/R/TOMOXSEC.R | 2 -
RTOMO-1.1-3/RTOMO/R/XSEC.drive.R | 4 +--
RTOMO-1.1-3/RTOMO/R/get2Drayblox.R | 4 +--
RTOMO-1.1-3/RTOMO/R/jstats.R |only
RTOMO-1.1-3/RTOMO/R/makeMOD.R | 2 -
RTOMO-1.1-3/RTOMO/R/meshgrid.R |only
RTOMO-1.1-3/RTOMO/R/pltomo.R | 2 -
RTOMO-1.1-3/RTOMO/R/tomo.colors.R |only
RTOMO-1.1-3/RTOMO/man/HOZscale.Rd |only
RTOMO-1.1-3/RTOMO/man/PLOT.TOMOXSEC.Rd | 2 -
RTOMO-1.1-3/RTOMO/man/RTOMO-package.Rd | 2 -
RTOMO-1.1-3/RTOMO/man/TOMOXSEC.Rd | 2 -
RTOMO-1.1-3/RTOMO/man/XSEC.drive.Rd | 2 -
RTOMO-1.1-3/RTOMO/man/jstats.Rd |only
RTOMO-1.1-3/RTOMO/man/meshgrid.Rd |only
RTOMO-1.1-3/RTOMO/man/pltomo.Rd | 2 -
RTOMO-1.1-3/RTOMO/man/tomo.colors.Rd |only
26 files changed, 51 insertions(+), 45 deletions(-)
Title: Seismic Hypocenter Determination
Diff between Rquake versions 2.2 dated 2014-01-06 and 2.3-1 dated 2015-04-27
Description: Hypocenter estimation and analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 12 +++----
MD5 | 14 ++++----
NAMESPACE | 3 +
R/RElocateEQ.R | 37 +++++++++++-----------
R/ROTcovQUAKE.R |only
R/plotJACKLLZ.R | 89 +++++++++++++++++++++++++++++++++++++++--------------
man/RElocateEQ.Rd | 4 +-
man/ROTcovQUAKE.Rd |only
man/plotJACKLLZ.Rd | 15 +++++++-
9 files changed, 117 insertions(+), 57 deletions(-)
Title: Kernel Density Estimation for Heaped Data
Diff between Kernelheaping versions 0.2 dated 2015-01-27 and 0.5 dated 2015-04-27
Description: In self-reported data the user often encounters heaped data, i.e. data which are rounded to a different
degree of coarseness. While this is mostly a minor problem in parametric density estimation the bias can be very large
for non-parametric methods such as kernel density estimation. This package implements a partly Bayesian algorithm treating the true unknown values as additional
parameters and estimates the rounding parameters to give a corrected kernel density estimate. It supports various standard bandwidth selection methods.
Additionally varying rounding probabilities (with the true value) and asymmetric rounding is estimable as well.
Author: Marcus Gross
Maintainer: Marcus Gross
Kernelheaping-0.2/Kernelheaping/man/Rprx2.Rd |only
Kernelheaping-0.5/Kernelheaping/DESCRIPTION | 12
Kernelheaping-0.5/Kernelheaping/MD5 | 17
Kernelheaping-0.5/Kernelheaping/NAMESPACE | 4
Kernelheaping-0.5/Kernelheaping/R/Kernelheaping.R | 2
Kernelheaping-0.5/Kernelheaping/R/functions.R | 274 ++++++----
Kernelheaping-0.5/Kernelheaping/man/Rprx.Rd |only
Kernelheaping-0.5/Kernelheaping/man/createSim.Kernelheaping.Rd | 4
Kernelheaping-0.5/Kernelheaping/man/dheaping.Rd | 27
Kernelheaping-0.5/Kernelheaping/man/sim.Kernelheaping.Rd | 32 +
Kernelheaping-0.5/Kernelheaping/man/simSummary.Kernelheaping.Rd |only
11 files changed, 239 insertions(+), 133 deletions(-)
Title: Generalized Hermite Distribution
Diff between hermite versions 1.0.2 dated 2015-03-20 and 1.1.0 dated 2015-04-27
Description: Probability functions and other utilities for the generalized Hermite distribution.
Author: David Moriña, Manuel Higueras, Pedro Puig and María Oliveira
Maintainer: David Moriña Soler
DESCRIPTION | 8 ++++----
MD5 | 24 +++++++++++++-----------
NAMESPACE | 3 +++
R/glm.hermite.R | 13 +++++++++++++
R/print.summary.glm.hermite.R |only
R/qhermite.R | 30 +++++++++++++++++++-----------
R/summary.glm.hermite.R |only
man/dhermite.Rd | 4 ++--
man/glm.hermite.Rd | 7 +++++--
man/hermite-internal.Rd | 4 ++++
man/hermite-package.Rd | 12 +++++++-----
man/phermite.Rd | 4 ++--
man/qhermite.Rd | 10 +++-------
man/rhermite.Rd | 4 +++-
14 files changed, 78 insertions(+), 45 deletions(-)
Title: Geophysics, Continuum Mechanics, Mogi Models, Gravity
Diff between geophys versions 1.3-6 dated 2014-01-13 and 1.3-8 dated 2015-04-27
Description: Codes for analyzing various problems of Geophysics, Continuum Mechanics and Mogi Models.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
R/mogi1.R | 14 +++++++-------
R/mogiM.R | 18 +++++++++---------
R/okada85.R | 10 +++++-----
demo/Fry.R | 2 +-
demo/Sdemo.R | 12 ++++++------
man/Maxstress.Rd | 2 ++
8 files changed, 43 insertions(+), 41 deletions(-)
Title: An S4 Lattice-Based Package for the Representation of
Multivariate Data
Diff between adegraphics versions 1.0-1 dated 2015-04-14 and 1.0-2 dated 2015-04-27
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Author: Stéphane Dray
Maintainer: Aurélie Siberchicot
DESCRIPTION | 15 ++++++---------
MD5 | 14 +++++++-------
NAMESPACE | 2 +-
R/ADEg.S2.R | 2 +-
R/ade4-plot.R | 2 +-
R/panelfunctions.R | 2 +-
inst/doc/adegraphics.pdf |binary
man/adegraphics-package.Rd | 4 ++--
8 files changed, 19 insertions(+), 22 deletions(-)
Title: Basic Functions for Supporting an Implementation of Choice
Experiments
Diff between support.CEs versions 0.3-2 dated 2014-06-22 and 0.3-3 dated 2015-04-27
Description: Provides seven basic functions that support an implementation of choice experiments.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki
DESCRIPTION | 20 +++++++++-----------
MD5 | 6 +++---
NEWS | 3 +++
man/support.CEs-package.Rd | 2 --
4 files changed, 15 insertions(+), 16 deletions(-)
Title: Basic Functions for Supporting an Implementation of Best-Worst
Scaling
Diff between support.BWS versions 0.1-2 dated 2014-06-22 and 0.1-3 dated 2015-04-27
Description: Provides three basic functions that support an implementation of object case (Case 1) best-worst scaling: one for converting a two-level orthogonal main-effect design/balanced incomplete block design into questions; one for creating a data set suitable for analysis; and one for calculating count-based scores.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki
DESCRIPTION | 16 ++++++++--------
MD5 | 6 +++---
NEWS | 3 +++
man/support.BWS-package.Rd | 2 --
4 files changed, 14 insertions(+), 13 deletions(-)
Title: Measuring the Difference Between Two Empirical Distributions
Diff between mded versions 0.1-1 dated 2014-06-22 and 0.1-2 dated 2015-04-27
Description: Provides a function for measuring the difference between two independent or non-independent empirical distributions and returning a significance level of the difference.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
NEWS | 3 +++
man/mded-package.Rd | 2 --
4 files changed, 13 insertions(+), 12 deletions(-)
Title: Graphical User Interface to the 'mi' Package
Diff between migui versions 0.00-09 dated 2011-11-21 and 1.1 dated 2015-04-27
Description: This GUI for the mi package walks the user through the steps of multiple imputation and the analysis of completed data.
Author: Bob Carpenter [ctb],
Ben Goodrich [cre, aut],
Yu-Sung Su [ctb]
Maintainer: Ben Goodrich
migui-0.00-09/migui/LICENSE |only
migui-0.00-09/migui/R/analysis.poolRegressionEstimates.R |only
migui-0.00-09/migui/R/analysis.saveImputedData.R |only
migui-0.00-09/migui/R/file.saveWorkspace.R |only
migui-0.00-09/migui/R/help.menu.R |only
migui-0.00-09/migui/R/imputation.checkModelFit.R |only
migui-0.00-09/migui/R/imputation.runImputation.R |only
migui-0.00-09/migui/R/load.first.R |only
migui-0.00-09/migui/R/setup.displayMissingDataPattern.R |only
migui-0.00-09/migui/R/setup.importDataFrom.R |only
migui-0.00-09/migui/R/setup.loadSession.R |only
migui-0.00-09/migui/R/setup.preprocessData.R |only
migui-0.00-09/migui/R/setup.specifyImputationInformation.R |only
migui-0.00-09/migui/R/utils.R |only
migui-1.1/migui/DESCRIPTION | 29
migui-1.1/migui/MD5 | 23
migui-1.1/migui/NAMESPACE | 8
migui-1.1/migui/R/migui.R | 1268 +++++++++++--
migui-1.1/migui/R/zzz.R |only
migui-1.1/migui/man/migui.Rd | 73
20 files changed, 1197 insertions(+), 204 deletions(-)
Title: A Package for Generalised Linear Spatial Models
Diff between geoRglm versions 0.9-4 dated 2013-12-13 and 0.9-8 dated 2015-04-27
Description: Functions for inference in generalised linear spatial models. The posterior and predictive inference is based on Markov chain Monte Carlo methods. Package geoRglm is an extension to the package geoR, which must be installed first.
Author: Ole F. Christensen [aut, cre],
Paulo J. Ribeiro Jr [aut]
Maintainer: Ole F. Christensen
geoRglm-0.9-4/geoRglm/INDEX |only
geoRglm-0.9-8/geoRglm/DESCRIPTION | 24 +++--
geoRglm-0.9-8/geoRglm/MD5 | 47 +++++-----
geoRglm-0.9-8/geoRglm/NAMESPACE | 5 -
geoRglm-0.9-8/geoRglm/R/bayes.R | 14 +--
geoRglm-0.9-8/geoRglm/R/binom.bayes.R | 6 -
geoRglm-0.9-8/geoRglm/R/binom.pred.R | 4
geoRglm-0.9-8/geoRglm/R/extensions.R | 8 -
geoRglm-0.9-8/geoRglm/R/glsm.krige.R | 2
geoRglm-0.9-8/geoRglm/R/mcmc.R | 9 --
geoRglm-0.9-8/geoRglm/R/nonpar.R | 2
geoRglm-0.9-8/geoRglm/R/pois.bayes.R | 12 +-
geoRglm-0.9-8/geoRglm/R/pois.pred.R | 6 -
geoRglm-0.9-8/geoRglm/R/zzz.R | 18 ++--
geoRglm-0.9-8/geoRglm/build/vignette.rds |binary
geoRglm-0.9-8/geoRglm/data/b50.rda |binary
geoRglm-0.9-8/geoRglm/data/b64.rda |binary
geoRglm-0.9-8/geoRglm/data/p50.rda |binary
geoRglm-0.9-8/geoRglm/data/rongelap.rda |binary
geoRglm-0.9-8/geoRglm/inst/doc/geoRglmintro.pdf |binary
geoRglm-0.9-8/geoRglm/man/binom.krige.bayes.Rd | 108 +++++++++++++-----------
geoRglm-0.9-8/geoRglm/man/glsm.mcmc.Rd | 1
geoRglm-0.9-8/geoRglm/man/output.glm.control.Rd | 14 +--
geoRglm-0.9-8/geoRglm/man/pois.krige.bayes.Rd | 44 ++++-----
geoRglm-0.9-8/geoRglm/src/geoRglm.c | 50 +++++------
25 files changed, 197 insertions(+), 177 deletions(-)
Title: Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Diff between faoutlier versions 0.4 dated 2014-05-24 and 0.5 dated 2015-04-27
Description: Tools for detecting and summarize influential cases that
can affect exploratory and confirmatory factor analysis models as well as
structural equation models more generally.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers
DESCRIPTION | 18 +-
MD5 | 54 ++++----
NAMESPACE | 9 +
NEWS | 8 +
R/GOF.R |only
R/LD.R | 123 +++++++++++--------
R/faoutlier.R | 5
R/forward.search.R | 223 +++++++++++++++++------------------
R/gCD.R | 106 ++++++++--------
R/obs.resid.R | 108 ++++++++--------
R/robustMD.R | 47 +++----
R/setClusters.R | 6
inst |only
man/GOF.Rd |only
man/LD.Rd | 32 +++--
man/faoutlier.Rd | 3
man/forward.search.Rd | 26 ++--
man/gCD.Rd | 15 +-
man/holzinger.Rd | 3
man/holzinger.outlier.Rd | 3
man/obs.resid.Rd | 9 -
man/robustMD.Rd | 11 -
man/setCluster.Rd | 3
tests/testthat/test-GOF.R |only
tests/testthat/test-LD.R | 46 ++-----
tests/testthat/test-forward.search.R | 8 -
tests/testthat/test-gCD.R | 26 ++--
tests/testthat/test-obs.resid.R | 21 ---
28 files changed, 482 insertions(+), 431 deletions(-)