Title: Vectorised Tools for URL Handling and Parsing
Diff between urltools versions 0.6 dated 2014-12-22 and 1.1.0 dated 2015-04-28
Description: A toolkit for handling URLs that so far includes functions for URL
encoding and decoding, parsing, and parameter extraction. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Author: Oliver Keyes [aut, cre], Mark Greenaway [ctb]
Maintainer: Oliver Keyes
urltools-0.6/urltools/man/extract_host.Rd |only
urltools-0.6/urltools/man/extract_parameter.Rd |only
urltools-0.6/urltools/man/replace_parameter.Rd |only
urltools-1.1.0/urltools/DESCRIPTION | 14
urltools-1.1.0/urltools/MD5 | 58 ++--
urltools-1.1.0/urltools/NAMESPACE | 19 +
urltools-1.1.0/urltools/NEWS | 25 +
urltools-1.1.0/urltools/R/RcppExports.R | 117 ++------
urltools-1.1.0/urltools/R/accessors.R |only
urltools-1.1.0/urltools/R/urltools.R | 3
urltools-1.1.0/urltools/README.md | 9
urltools-1.1.0/urltools/build/vignette.rds |binary
urltools-1.1.0/urltools/inst/doc/urltools.R | 48 ++-
urltools-1.1.0/urltools/inst/doc/urltools.Rmd | 66 +++-
urltools-1.1.0/urltools/inst/doc/urltools.html | 68 +++-
urltools-1.1.0/urltools/man/domain.Rd |only
urltools-1.1.0/urltools/man/encoder.Rd | 3
urltools-1.1.0/urltools/man/fragment.Rd |only
urltools-1.1.0/urltools/man/path.Rd |only
urltools-1.1.0/urltools/man/port.Rd |only
urltools-1.1.0/urltools/man/query.Rd |only
urltools-1.1.0/urltools/man/scheme.Rd |only
urltools-1.1.0/urltools/man/url_parameters.Rd |only
urltools-1.1.0/urltools/man/url_parse.Rd | 12
urltools-1.1.0/urltools/man/urltools.Rd | 6
urltools-1.1.0/urltools/src/Makevars |only
urltools-1.1.0/urltools/src/RcppExports.cpp | 132 +++------
urltools-1.1.0/urltools/src/accessors.cpp |only
urltools-1.1.0/urltools/src/encoding.cpp | 58 +++-
urltools-1.1.0/urltools/src/encoding.h | 90 +++---
urltools-1.1.0/urltools/src/parsing.cpp | 241 +++++++++--------
urltools-1.1.0/urltools/src/parsing.h | 158 +++++++++--
urltools-1.1.0/urltools/src/urltools.cpp | 196 ++++---------
urltools-1.1.0/urltools/tests/testthat/test_encoding.R | 4
urltools-1.1.0/urltools/tests/testthat/test_get_set.R |only
urltools-1.1.0/urltools/tests/testthat/test_parsing.R | 54 +--
urltools-1.1.0/urltools/vignettes/urltools.Rmd | 66 +++-
37 files changed, 820 insertions(+), 627 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 3.3-3 dated 2014-01-05 and 3.4-5 dated 2015-04-28
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RSEIS-3.3-3/RSEIS/man/JGET.seis.Rd |only
RSEIS-3.3-3/RSEIS/man/rseis2sac.Rd |only
RSEIS-3.3-3/RSEIS/man/write1sac.Rd |only
RSEIS-3.4-5/RSEIS/DESCRIPTION | 10 -
RSEIS-3.4-5/RSEIS/MD5 | 85 ++++++----
RSEIS-3.4-5/RSEIS/NEWS | 10 +
RSEIS-3.4-5/RSEIS/R/CHOP.SEISN.R | 11 +
RSEIS-3.4-5/RSEIS/R/FmakeDB.R | 9 -
RSEIS-3.4-5/RSEIS/R/GET.seis.R |only
RSEIS-3.4-5/RSEIS/R/GLUE.GET.seis.R | 30 ++-
RSEIS-3.4-5/RSEIS/R/INSTresponse.R | 13 +
RSEIS-3.4-5/RSEIS/R/JSAC.seis.R | 4
RSEIS-3.4-5/RSEIS/R/JSEGY.seis.R | 4
RSEIS-3.4-5/RSEIS/R/Mine.seis.R | 2
RSEIS-3.4-5/RSEIS/R/PickWIN.R |only
RSEIS-3.4-5/RSEIS/R/WINGH.R | 2
RSEIS-3.4-5/RSEIS/R/X2SAC.R | 2
RSEIS-3.4-5/RSEIS/R/convert2Rseis.R | 2
RSEIS-3.4-5/RSEIS/R/fixcomps.R | 4
RSEIS-3.4-5/RSEIS/R/getphaselag2.R | 7
RSEIS-3.4-5/RSEIS/R/makeDB.R | 2
RSEIS-3.4-5/RSEIS/R/pADDPIX.R |only
RSEIS-3.4-5/RSEIS/R/pickFUNCS.R | 273 ++---------------------------------
RSEIS-3.4-5/RSEIS/R/prepSEIS.R | 25 ++-
RSEIS-3.4-5/RSEIS/R/read1sac.R |only
RSEIS-3.4-5/RSEIS/R/read1segy.R |only
RSEIS-3.4-5/RSEIS/R/rseis2sac.R | 58 +++++--
RSEIS-3.4-5/RSEIS/R/rseis2segy.R |only
RSEIS-3.4-5/RSEIS/R/sac2rseis.R |only
RSEIS-3.4-5/RSEIS/R/segy2rseis.R |only
RSEIS-3.4-5/RSEIS/R/swig.ALLPX.R | 5
RSEIS-3.4-5/RSEIS/R/swig.R | 8 -
RSEIS-3.4-5/RSEIS/R/write1sac.R | 42 ++---
RSEIS-3.4-5/RSEIS/R/write1segy.R |only
RSEIS-3.4-5/RSEIS/man/GET.seis.Rd |only
RSEIS-3.4-5/RSEIS/man/JSAC.seis.Rd | 4
RSEIS-3.4-5/RSEIS/man/PICK.DOC.Rd | 2
RSEIS-3.4-5/RSEIS/man/SPECT.drive.Rd | 2
RSEIS-3.4-5/RSEIS/man/YPIX.Rd | 1
RSEIS-3.4-5/RSEIS/man/ZOOM.SEISN.Rd | 3
RSEIS-3.4-5/RSEIS/man/choosfilt.Rd | 2
RSEIS-3.4-5/RSEIS/man/grotseis.Rd | 15 +
RSEIS-3.4-5/RSEIS/man/plocator.Rd | 2
RSEIS-3.4-5/RSEIS/man/read1segy.Rd |only
RSEIS-3.4-5/RSEIS/man/rseis2segy.Rd |only
RSEIS-3.4-5/RSEIS/man/screens.Rd | 2
RSEIS-3.4-5/RSEIS/man/segy2rseis.Rd |only
RSEIS-3.4-5/RSEIS/man/swig.Rd | 60 ++++---
RSEIS-3.4-5/RSEIS/man/wlet.drive.Rd | 2
RSEIS-3.4-5/RSEIS/man/write1segy.Rd |only
RSEIS-3.4-5/RSEIS/man/zlocator.Rd | 4
RSEIS-3.4-5/RSEIS/src/TTray.c | 4
52 files changed, 311 insertions(+), 400 deletions(-)
Title: API Wrapper for Quandl.com
Diff between Quandl versions 2.4.0 dated 2014-11-04 and 2.6.0 dated 2015-04-28
Description: Functions for interacting directly with the Quandl API to offer data
in a number of formats usable in R, as well as the ability to search.
Author: Raymond McTaggart [aut, cre],
Gergely Daroczi [aut],
Quandl Inc. [cph]
Maintainer: Raymond McTaggart
Quandl-2.4.0/Quandl/R/Quandlpush.R |only
Quandl-2.4.0/Quandl/inst |only
Quandl-2.4.0/Quandl/man/Quandl.curlopts.Rd |only
Quandl-2.4.0/Quandl/man/Quandl.push.Rd |only
Quandl-2.4.0/Quandl/tests/test-all.R |only
Quandl-2.6.0/Quandl/ChangeLog | 27 +
Quandl-2.6.0/Quandl/DESCRIPTION | 29 -
Quandl-2.6.0/Quandl/LICENSE | 2
Quandl-2.6.0/Quandl/MD5 | 34 -
Quandl-2.6.0/Quandl/NAMESPACE | 13
Quandl-2.6.0/Quandl/R/Quandl.R | 499 +++++++++++++++-----------
Quandl-2.6.0/Quandl/R/Quandlapi.R | 87 +---
Quandl-2.6.0/Quandl/R/Quandlsearch.R | 94 ++--
Quandl-2.6.0/Quandl/README.md | 53 --
Quandl-2.6.0/Quandl/man/Quandl.Rd | 20 -
Quandl-2.6.0/Quandl/man/Quandl.auth.Rd | 3
Quandl-2.6.0/Quandl/man/Quandl.dataset.get.Rd |only
Quandl-2.6.0/Quandl/man/Quandl.search.Rd | 7
Quandl-2.6.0/Quandl/man/metaData.Rd | 3
Quandl-2.6.0/Quandl/man/quandl.api.Rd | 11
Quandl-2.6.0/Quandl/tests/testthat |only
Quandl-2.6.0/Quandl/tests/testthat.R |only
22 files changed, 496 insertions(+), 386 deletions(-)
Title: Omics Data Integration Project
Diff between mixOmics versions 5.0-3 dated 2014-09-01 and 5.0-4 dated 2015-04-28
Description: We provide statistical integrative techniques and
variants to analyse highly dimensional data sets: regularized
Canonical Correlation Analysis ('rCCA') and sparse Partial Least Squares variants ('sPLS')
to unravel relationships between two heterogeneous data sets of size (n times p) and (n times q) where the p and
q variables are measured on the same samples or individuals n. These data may come from high throughput
technologies, such as 'omics' data (e.g. transcriptomics, metabolomics or proteomics
data) that require an integrative or joint analysis. However, 'mixOmics' can also be applied to any other
large data sets where p + q >> n. 'rCCA' is a regularized version of Canonical Correlation Analysis to deal with
the large number of variables. 'sPLS' allows variable selection in a one step procedure and two frameworks
are proposed: regression and canonical analysis. Numerous graphical outputs are provided to help interpreting
the results. Recent methodological developments include: sparse PLS-Discriminant Analysis ('sPLS-DA'), Independent
Principal Component Analysis ('IPCA'), multilevel analysis using variance decomposition of the data and integration
of multiple data sets with regularized Generalised Canonical Correlation Analysis ('rGCCA') and variants (sparse 'GCCA'). More details can be found
on our website.
Author: Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean with key contributors Florian Rohart, Benoit Gautier
and contributions from Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet.
Maintainer: Kim-Anh Le Cao
mixOmics-5.0-3/mixOmics/R/jet.colors.R |only
mixOmics-5.0-3/mixOmics/R/select.var.R |only
mixOmics-5.0-3/mixOmics/data/data.simu.rda |only
mixOmics-5.0-3/mixOmics/man/data.simu.Rd |only
mixOmics-5.0-3/mixOmics/man/jet.colors.Rd |only
mixOmics-5.0-3/mixOmics/man/select.var.Rd |only
mixOmics-5.0-4/mixOmics/DESCRIPTION | 45
mixOmics-5.0-4/mixOmics/MD5 | 244
mixOmics-5.0-4/mixOmics/NAMESPACE | 24
mixOmics-5.0-4/mixOmics/NEWS | 21
mixOmics-5.0-4/mixOmics/R/Mfold.R | 6
mixOmics-5.0-4/mixOmics/R/bin.color.R | 198
mixOmics-5.0-4/mixOmics/R/cim.R | 10
mixOmics-5.0-4/mixOmics/R/cim.pls.R | 6
mixOmics-5.0-4/mixOmics/R/cim.rcc.R | 6
mixOmics-5.0-4/mixOmics/R/cim.spls.R | 6
mixOmics-5.0-4/mixOmics/R/color.GreenRed.R |only
mixOmics-5.0-4/mixOmics/R/color.jet.R |only
mixOmics-5.0-4/mixOmics/R/color.mixo.R |only
mixOmics-5.0-4/mixOmics/R/color.spectral.R |only
mixOmics-5.0-4/mixOmics/R/image.tune.rcc.R | 6
mixOmics-5.0-4/mixOmics/R/imgCor.R | 348 -
mixOmics-5.0-4/mixOmics/R/ipca.R | 240
mixOmics-5.0-4/mixOmics/R/loo.R | 6
mixOmics-5.0-4/mixOmics/R/map.R | 70
mixOmics-5.0-4/mixOmics/R/mat.rank.R | 48
mixOmics-5.0-4/mixOmics/R/multilevel.R | 513 -
mixOmics-5.0-4/mixOmics/R/nearZeroVar.R | 101
mixOmics-5.0-4/mixOmics/R/network.R | 1122 +--
mixOmics-5.0-4/mixOmics/R/network.rcc.R | 6
mixOmics-5.0-4/mixOmics/R/network.spls.R | 6
mixOmics-5.0-4/mixOmics/R/nipals.R | 6
mixOmics-5.0-4/mixOmics/R/pca.R | 222
mixOmics-5.0-4/mixOmics/R/pcasvd.R | 134
mixOmics-5.0-4/mixOmics/R/perf.R | 783 +-
mixOmics-5.0-4/mixOmics/R/pheatmap.multilevel.R | 159
mixOmics-5.0-4/mixOmics/R/pheatmap.multilevel.splsda1fact.R |only
mixOmics-5.0-4/mixOmics/R/pheatmap.multilevel.splsda2fact.R |only
mixOmics-5.0-4/mixOmics/R/plot.pca.R | 48
mixOmics-5.0-4/mixOmics/R/plot.perf.R | 21
mixOmics-5.0-4/mixOmics/R/plot.rcc.R | 32
mixOmics-5.0-4/mixOmics/R/plot3dIndiv.R | 820 +-
mixOmics-5.0-4/mixOmics/R/plot3dVar.R | 3482 ++++++------
mixOmics-5.0-4/mixOmics/R/plotIndiv.R | 411 -
mixOmics-5.0-4/mixOmics/R/plotVar.R | 238
mixOmics-5.0-4/mixOmics/R/pls.R | 197
mixOmics-5.0-4/mixOmics/R/plsda.R | 43
mixOmics-5.0-4/mixOmics/R/predict.R | 4
mixOmics-5.0-4/mixOmics/R/print.methods.R | 784 +-
mixOmics-5.0-4/mixOmics/R/rcc.R | 228
mixOmics-5.0-4/mixOmics/R/s.match.R | 207
mixOmics-5.0-4/mixOmics/R/scatterutil.R | 3
mixOmics-5.0-4/mixOmics/R/selectVar.R |only
mixOmics-5.0-4/mixOmics/R/sipca.R | 258
mixOmics-5.0-4/mixOmics/R/spca.R | 360 -
mixOmics-5.0-4/mixOmics/R/spls.R | 240
mixOmics-5.0-4/mixOmics/R/splsda.R | 41
mixOmics-5.0-4/mixOmics/R/summary.R | 24
mixOmics-5.0-4/mixOmics/R/tau.estim.R |only
mixOmics-5.0-4/mixOmics/R/tune.multilevel.R | 365 -
mixOmics-5.0-4/mixOmics/R/tune.pca.R | 268
mixOmics-5.0-4/mixOmics/R/tune.rcc.R | 6
mixOmics-5.0-4/mixOmics/R/tune.splsdalevel1.R |only
mixOmics-5.0-4/mixOmics/R/tune.splsdalevel2.R |only
mixOmics-5.0-4/mixOmics/R/tune.splslevel.R |only
mixOmics-5.0-4/mixOmics/R/unmap.R | 118
mixOmics-5.0-4/mixOmics/R/valid.R | 6
mixOmics-5.0-4/mixOmics/R/vip.R | 6
mixOmics-5.0-4/mixOmics/R/withinVariation.R |only
mixOmics-5.0-4/mixOmics/R/wrapper.rgcca.R | 23
mixOmics-5.0-4/mixOmics/R/wrapper.sgcca.R | 23
mixOmics-5.0-4/mixOmics/data/breast.tumors.rda |binary
mixOmics-5.0-4/mixOmics/data/datalist | 4
mixOmics-5.0-4/mixOmics/data/linnerud.rda |binary
mixOmics-5.0-4/mixOmics/data/liver.toxicity.rda |binary
mixOmics-5.0-4/mixOmics/data/multidrug.rda |binary
mixOmics-5.0-4/mixOmics/data/nutrimouse.rda |binary
mixOmics-5.0-4/mixOmics/data/prostate.rda |binary
mixOmics-5.0-4/mixOmics/data/srbct.rda |binary
mixOmics-5.0-4/mixOmics/data/vac18.rda |binary
mixOmics-5.0-4/mixOmics/data/vac18.simulated.rda |only
mixOmics-5.0-4/mixOmics/data/yeast.rda |binary
mixOmics-5.0-4/mixOmics/man/breast.tumors.Rd | 114
mixOmics-5.0-4/mixOmics/man/cim.Rd | 364 -
mixOmics-5.0-4/mixOmics/man/color.jet.Rd |only
mixOmics-5.0-4/mixOmics/man/estim.regul.Rd | 20
mixOmics-5.0-4/mixOmics/man/image.estim.regul.Rd | 20
mixOmics-5.0-4/mixOmics/man/image.tune.rcc.Rd | 88
mixOmics-5.0-4/mixOmics/man/imgCor.Rd | 188
mixOmics-5.0-4/mixOmics/man/internal-functions.Rd | 7
mixOmics-5.0-4/mixOmics/man/ipca.Rd | 192
mixOmics-5.0-4/mixOmics/man/linnerud.Rd | 2
mixOmics-5.0-4/mixOmics/man/liver.toxicity.Rd | 2
mixOmics-5.0-4/mixOmics/man/mat.rank.Rd | 113
mixOmics-5.0-4/mixOmics/man/multidrug.Rd | 168
mixOmics-5.0-4/mixOmics/man/multilevel.Rd | 287
mixOmics-5.0-4/mixOmics/man/nearZeroVar.Rd | 8
mixOmics-5.0-4/mixOmics/man/network.Rd | 35
mixOmics-5.0-4/mixOmics/man/nipals.Rd | 148
mixOmics-5.0-4/mixOmics/man/nutrimouse.Rd | 2
mixOmics-5.0-4/mixOmics/man/pca.Rd | 4
mixOmics-5.0-4/mixOmics/man/pcatune.Rd | 20
mixOmics-5.0-4/mixOmics/man/perf.Rd | 202
mixOmics-5.0-4/mixOmics/man/pheatmap.multilevel.Rd | 238
mixOmics-5.0-4/mixOmics/man/plot.perf.Rd | 2
mixOmics-5.0-4/mixOmics/man/plot.rcc.Rd | 90
mixOmics-5.0-4/mixOmics/man/plot3dIndiv.Rd | 6
mixOmics-5.0-4/mixOmics/man/plot3dVar.Rd | 392 -
mixOmics-5.0-4/mixOmics/man/plotIndiv.Rd | 7
mixOmics-5.0-4/mixOmics/man/plotVar.Rd | 70
mixOmics-5.0-4/mixOmics/man/pls.Rd | 176
mixOmics-5.0-4/mixOmics/man/plsda.Rd | 15
mixOmics-5.0-4/mixOmics/man/predict.Rd | 6
mixOmics-5.0-4/mixOmics/man/print.methods.Rd | 178
mixOmics-5.0-4/mixOmics/man/prostate.Rd | 70
mixOmics-5.0-4/mixOmics/man/rcc.Rd | 198
mixOmics-5.0-4/mixOmics/man/s.match.Rd | 4
mixOmics-5.0-4/mixOmics/man/scatterutil.Rd | 2
mixOmics-5.0-4/mixOmics/man/selectVar.Rd |only
mixOmics-5.0-4/mixOmics/man/sipca.Rd | 170
mixOmics-5.0-4/mixOmics/man/spca.Rd | 4
mixOmics-5.0-4/mixOmics/man/spls.Rd | 207
mixOmics-5.0-4/mixOmics/man/splsda.Rd | 189
mixOmics-5.0-4/mixOmics/man/summary.Rd | 210
mixOmics-5.0-4/mixOmics/man/tau.estimate.Rd |only
mixOmics-5.0-4/mixOmics/man/tune.multilevel.Rd | 143
mixOmics-5.0-4/mixOmics/man/tune.pca.Rd | 138
mixOmics-5.0-4/mixOmics/man/tune.rcc.Rd | 160
mixOmics-5.0-4/mixOmics/man/vac18.simulated.Rd |only
mixOmics-5.0-4/mixOmics/man/valid.Rd | 8
mixOmics-5.0-4/mixOmics/man/vip.Rd | 121
mixOmics-5.0-4/mixOmics/man/withinVariation.Rd |only
mixOmics-5.0-4/mixOmics/man/wrapper.rgcca.Rd | 120
mixOmics-5.0-4/mixOmics/man/wrapper.sgcca.Rd | 118
mixOmics-5.0-4/mixOmics/man/yeast.Rd | 78
135 files changed, 8725 insertions(+), 8975 deletions(-)
Title: Regression Models for Interval Censored Data
Diff between icenReg versions 1.0 dated 2015-04-28 and 1.1 dated 2015-04-28
Description: Regression models for interval censored data. Currently supports a semi-parametric Cox-PH and an imputation Cox-PH model which imputes the interval censored times based on Cox-PH model with an parametric baseline and then analyzes each imputed data set with the semi-parametric model.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/coxph.R | 21 +++++++++++++++++----
3 files changed, 22 insertions(+), 9 deletions(-)
Title: Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Diff between glmm versions 1.0.2 dated 2015-03-19 and 1.0.3 dated 2015-04-28
Description: Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.
Author: Christina Knudson
Maintainer: Christina Knudson
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
NAMESPACE | 1 +
R/summary.mcla.R | 16 ++++++++++++++++
inst/doc/intro.R | 13 ++++++++++++-
inst/doc/intro.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++++--
inst/doc/intro.pdf |binary
man/vcov.glmm.Rd |only
vignettes/intro.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++++--
9 files changed, 137 insertions(+), 16 deletions(-)
Title: Dunn's Test of Multiple Comparisons Using Rank Sums
Diff between dunn.test versions 1.2.3 dated 2015-02-25 and 1.2.4 dated 2015-04-28
Description: Computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. 'dunn.test' makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. 'dunn.test' accounts for tied ranks.
Author: Alexis Dinno
Maintainer: Alexis Dinno
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
R/dunn.test.R | 24 ++++++++++++------------
3 files changed, 19 insertions(+), 19 deletions(-)
Title: A Fast Solver for Parameterized Linear Programming Problems and
Constrained L1 Minimization Approach to Sparse Precision Matrix
Estimation
Diff between fastclime versions 1.2.4 dated 2014-04-29 and 1.2.5 dated 2015-04-28
Description: An efficient method of recovering precision matrices
by applying the parametric simplex method is provided in this package.
The computation is based on a linear optimization solver.
It also contains a generic Linear Programming solver and a
parameterized Linear Programming solver based on the parametric simplex method.
Author: Haotian Pang, Han Liu and Robert Vanderbei
Maintainer: Haotian Pang
fastclime-1.2.4/fastclime/src/SFGen.c |only
fastclime-1.2.5/fastclime/DESCRIPTION | 22 ++++++++++---------
fastclime-1.2.5/fastclime/MD5 | 9 +++----
fastclime-1.2.5/fastclime/R/fastclime.generator.R | 6 -----
fastclime-1.2.5/fastclime/man/fastclime.generator.Rd | 8 +-----
fastclime-1.2.5/fastclime/src/parametric.c | 11 ++++++---
6 files changed, 26 insertions(+), 30 deletions(-)
Title: Renewal Method for Extreme Values Extrapolation
Diff between Renext versions 2.1-0 dated 2013-10-04 and 2.1-10 dated 2015-04-28
Description: Extreme value analysis using the Peaks Over Threshold (POT) method also called 'methode du renouvellement' by some French-speaking hydrologists.
Author: Yves Deville
Maintainer: Lise Bardet
ChangeLog | 15
DESCRIPTION | 13
MD5 | 32 -
NAMESPACE | 1
R/Maxlo.R | 14
R/NBlevy.R | 306 +++++------
R/rRenouv.R | 4
R/readXML.R | 1287 +++++++++++++++++++++++++-------------------------
R/transexp.R | 19
R/weibplot.R | 2
man/Brest.Rd | 48 +
man/Lomax.Rd | 100 ++-
man/Maxlo.Rd | 94 ++-
man/NBlevy.Rd | 137 +++--
man/Renext-package.Rd | 31 -
man/plot.Rendata.Rd | 18
man/readXML.Rd | 6
17 files changed, 1141 insertions(+), 986 deletions(-)
Title: Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Diff between PopVar versions 1.0 dated 2015-04-01 and 1.1 dated 2015-04-28
Description: The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015). Crop Sci. doi:10.2135/cropsci2015.01.0030. A dataset 'think_barley.rda' is included for reference and examples.
Author: Tyler Tiede [aut, cre], Mohsen Mohammadi [ctb], Kevin P. Smith [ctb]
Maintainer: Tyler Tiede
PopVar-1.0/PopVar/R/Internal_PopVar_functions_2.20.15.R |only
PopVar-1.0/PopVar/R/PopVar.R |only
PopVar-1.0/PopVar/R/XValidate.nonInd_function_Tiede_3.10.15.R |only
PopVar-1.0/PopVar/R/XValidate_Ind_function_Tiede_3.10.15.R |only
PopVar-1.0/PopVar/R/pop.predict_function_V2_3.10.15.R |only
PopVar-1.0/PopVar/R/x.val_function_3.13.15.R |only
PopVar-1.0/PopVar/man/PopVar.Rd |only
PopVar-1.1/PopVar/DESCRIPTION | 8 +--
PopVar-1.1/PopVar/MD5 | 24 +++++-----
PopVar-1.1/PopVar/NAMESPACE | 2
PopVar-1.1/PopVar/R/Internal_PopVar_functions_4.28.15.R |only
PopVar-1.1/PopVar/R/PopVar-package.R |only
PopVar-1.1/PopVar/R/XValidate.nonInd_function_4.28.15.R |only
PopVar-1.1/PopVar/R/XValidate_Ind_function_4.28.15.R |only
PopVar-1.1/PopVar/R/pop.predict_function_4.28.15.R |only
PopVar-1.1/PopVar/R/x.val_function_4.28.15.R |only
PopVar-1.1/PopVar/man/PopVar-package.Rd |only
PopVar-1.1/PopVar/man/pop.predict.Rd | 24 +++++-----
PopVar-1.1/PopVar/man/think_barley.rda.Rd | 2
PopVar-1.1/PopVar/man/x.val.Rd | 18 ++++---
20 files changed, 41 insertions(+), 37 deletions(-)
Title: Analyze and Gaussianize Heavy-Tailed, Skewed Data
Diff between LambertW versions 0.5 dated 2014-11-21 and 0.5.1 dated 2015-04-28
Description: Lambert W x F distributions are a generalized framework to analyze
skewed, heavy-tailed data. They are based on an input/output system, where
the input random variable (RV) X ~ F, and the output Y is a non-linearly
transformed version of X with similar properties, but slightly skewed and/or
heavy-tailed. This transformed RV Y has a Lambert W x F distribution.
This package contains functions to model and analyze skewed, heavy-tailed
data the Lambert Way: simulate random samples, estimate parameters, compute
quantiles, and plot/print results nicely. Probably the most important
function is 'Gaussianize', which works similarly to 'scale', but actually
makes the data Gaussian. A do-it-yourself toolkit allows users to define
their own Lambert W x 'MyFavoriteDistribution' and use it in their analysis
right away.
Author: Georg M. Goerg
Maintainer: Georg M. Goerg
LambertW-0.5.1/LambertW/DESCRIPTION | 10 -
LambertW-0.5.1/LambertW/MD5 | 105 +++++------
LambertW-0.5.1/LambertW/NAMESPACE | 4
LambertW-0.5.1/LambertW/NEWS | 23 ++
LambertW-0.5.1/LambertW/R/0_LambertW-toolkit.R | 4
LambertW-0.5.1/LambertW/R/0_LambertW-utils.R | 4
LambertW-0.5.1/LambertW/R/0_loglik-LambertW-utils.R | 4
LambertW-0.5.1/LambertW/R/Gaussianize.R | 10 -
LambertW-0.5.1/LambertW/R/LambertW-package.R | 8
LambertW-0.5.1/LambertW/R/MLE_LambertW.R | 4
LambertW-0.5.1/LambertW/R/deprecated_functions.R | 11 +
LambertW-0.5.1/LambertW/R/get_input.R | 4
LambertW-0.5.1/LambertW/R/mLambertW.R | 8
LambertW-0.5.1/LambertW/R/test_normality.R |only
LambertW-0.5.1/LambertW/R/zzz.R |only
LambertW-0.5.1/LambertW/man/G_delta_alpha.Rd | 3
LambertW-0.5.1/LambertW/man/Gaussianize.Rd | 9
LambertW-0.5.1/LambertW/man/H.Rd | 3
LambertW-0.5.1/LambertW/man/H_gamma.Rd | 3
LambertW-0.5.1/LambertW/man/IGMM.Rd | 3
LambertW-0.5.1/LambertW/man/LambertW-package.Rd | 11 -
LambertW-0.5.1/LambertW/man/LambertW-toolkit.Rd | 7
LambertW-0.5.1/LambertW/man/LambertW-utils.Rd | 7
LambertW-0.5.1/LambertW/man/LambertW_fit-methods.Rd | 3
LambertW-0.5.1/LambertW/man/LambertW_input_output-methods.Rd | 3
LambertW-0.5.1/LambertW/man/MLE_LambertW.Rd | 3
LambertW-0.5.1/LambertW/man/U-utils.Rd | 3
LambertW-0.5.1/LambertW/man/W.Rd | 3
LambertW-0.5.1/LambertW/man/W_delta.Rd | 3
LambertW-0.5.1/LambertW/man/W_gamma.Rd | 3
LambertW-0.5.1/LambertW/man/beta-utils.Rd | 3
LambertW-0.5.1/LambertW/man/common-arguments.Rd | 3
LambertW-0.5.1/LambertW/man/datasets.Rd | 3
LambertW-0.5.1/LambertW/man/delta_01.Rd | 3
LambertW-0.5.1/LambertW/man/delta_GMM.Rd | 3
LambertW-0.5.1/LambertW/man/delta_Taylor.Rd | 3
LambertW-0.5.1/LambertW/man/deprecated-functions.Rd | 6
LambertW-0.5.1/LambertW/man/distname-utils.Rd | 3
LambertW-0.5.1/LambertW/man/gamma_01.Rd | 3
LambertW-0.5.1/LambertW/man/gamma_GMM.Rd | 3
LambertW-0.5.1/LambertW/man/gamma_Taylor.Rd | 3
LambertW-0.5.1/LambertW/man/get_gamma_bounds.Rd | 3
LambertW-0.5.1/LambertW/man/get_input.Rd | 7
LambertW-0.5.1/LambertW/man/get_output.Rd | 3
LambertW-0.5.1/LambertW/man/get_support.Rd | 3
LambertW-0.5.1/LambertW/man/ks.test.t.Rd | 3
LambertW-0.5.1/LambertW/man/loglik-LambertW-utils.Rd | 49 ++---
LambertW-0.5.1/LambertW/man/lp_norm.Rd | 3
LambertW-0.5.1/LambertW/man/mc.Rd | 3
LambertW-0.5.1/LambertW/man/p_m1.Rd | 3
LambertW-0.5.1/LambertW/man/tau-utils.Rd | 3
LambertW-0.5.1/LambertW/man/test_normality.Rd |only
LambertW-0.5.1/LambertW/man/test_symmetry.Rd | 3
LambertW-0.5.1/LambertW/man/theta-utils.Rd | 3
LambertW-0.5/LambertW/R/normfit.R |only
LambertW-0.5/LambertW/man/normfit.Rd |only
56 files changed, 242 insertions(+), 146 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions in
Causal Models
Diff between causaleffect versions 1.1 dated 2015-04-21 and 1.1.1 dated 2015-04-28
Description: An implementation of a conditional causal effect identification algorithm constructed by Ilya Shpitser and Judea Pearl (2006) for deriving expressions of joint interventional distributions in causal models, which contain unobserved variables and induce directed acyclic graphs.
Author: Santtu Tikka
Maintainer: Santtu Tikka
causaleffect-1.1.1/causaleffect/DESCRIPTION | 10 +++---
causaleffect-1.1.1/causaleffect/MD5 | 19 ++++++-----
causaleffect-1.1.1/causaleffect/NAMESPACE | 4 +-
causaleffect-1.1.1/causaleffect/R/causal.effect.R | 20 ++++++------
causaleffect-1.1.1/causaleffect/R/get.expression.R |only
causaleffect-1.1.1/causaleffect/R/idc.R | 13 ++++---
causaleffect-1.1.1/causaleffect/R/unobserved.graph.R |only
causaleffect-1.1.1/causaleffect/man/causal.effect.Rd | 7 ++--
causaleffect-1.1.1/causaleffect/man/causaleffect-package.Rd | 14 ++++----
causaleffect-1.1.1/causaleffect/man/get.expression.Rd |only
causaleffect-1.1.1/causaleffect/man/parse.graphml.Rd | 2 -
causaleffect-1.1/causaleffect/R/getExpression.R |only
causaleffect-1.1/causaleffect/R/getExpression.probability.R |only
13 files changed, 46 insertions(+), 43 deletions(-)
Title: Time Frame User Utilities
Diff between tfplot versions 2014.2-2 dated 2014-02-10 and 2015.4-1 dated 2015-04-28
Description: Utilities for simple manipulation and quick
plotting of time series data. These utilities use the tframe package
which provides a programming kernel for time series. Extensions to
tframe provided in tframePlus can also be used. See the Guide vignette
for examples.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 13 +++++--------
MD5 | 16 ++++++++--------
NEWS | 4 ++++
R/tfplot.R | 4 ++--
build/vignette.rds |binary
tests/autoAxis.R | 2 ++
tests/tfOnePlot.R | 1 +
tests/tfplot.R | 1 +
tests/utils.R | 10 ++++++----
9 files changed, 29 insertions(+), 22 deletions(-)
Title: Easy Handling of and Access to Files Organized in Structured
Directories
Diff between R.filesets versions 2.7.0 dated 2015-02-23 and 2.7.1 dated 2015-04-28
Description: A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterate such sets. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to be in an beta stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson
DESCRIPTION | 24 ++-
MD5 | 18 +-
NEWS | 14 +-
R/Arguments.EXTRAS.R | 6
R/FullNameInterface.R | 4
R/GenericDataFile.R | 6
R/GenericDataFileSetList.R | 6
R/GenericTabularFile.writeColumnsToFiles.R | 20 +--
R/RDataFile.R | 188 ++++++++++++++---------------
R/fullname.R | 6
10 files changed, 152 insertions(+), 140 deletions(-)
Title: Permutations of Multisets in Cool-Lex Order
Diff between multicool versions 0.1-5 dated 2015-02-26 and 0.1-6 dated 2015-04-28
Description: A set of tools to permute multisets without loops or hash tables and to generate integer partitions. The permutation functions are based on C code from Aaron Williams. Cool-lex order is similar to colexicographical order. The algorithm is described in Williams, A. Loopless Generation of Multiset Permutations by Prefix Shifts. SODA 2009, Symposium on Discrete Algorithms, New York, United States. The permutation code is distributed without restrictions. The code for stable and efficient computation of multinomial coefficients comes from Dave Barber. The code can be download from http://home.comcast.net/~tamivox/dave/multinomial/index.html and is distributed without conditions. The package also generates the integer partitions of a positive, non-zero integer n. The C++ code for this is based on Python code from Jerome Kelleher which can be found here http://jeromekelleher.net/partitions.php. The C++ code and Python code are distributed without conditions.
Author: James Curran, Aaron Williams, Jerome Kelleher, Dave Barber
Maintainer: James Curran
DESCRIPTION | 8 ++--
MD5 | 10 ++---
R/genComp.R | 21 +++++++++-
man/genComp.Rd | 6 ++-
src/RcppExports.cpp | 100 ++++++++++++++++++----------------------------------
src/multicool.cpp | 2 -
6 files changed, 69 insertions(+), 78 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 3.3 dated 2015-03-19 and 3.3.1 dated 2015-04-28
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function, variable labels, color themes, and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is also available as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with RStudio and knitr including generation of knitr instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing
lessR-3.3.1/lessR/DESCRIPTION | 10
lessR-3.3.1/lessR/MD5 | 178 +--
lessR-3.3.1/lessR/NAMESPACE | 5
lessR-3.3.1/lessR/NEWS | 67 +
lessR-3.3.1/lessR/R/ANOVAz1.R | 21
lessR-3.3.1/lessR/R/ANOVAz2.R | 14
lessR-3.3.1/lessR/R/BoxPlot.R | 60 +
lessR-3.3.1/lessR/R/Correlation.R | 32
lessR-3.3.1/lessR/R/Density.R | 93 +
lessR-3.3.1/lessR/R/DotPlot.R | 2
lessR-3.3.1/lessR/R/Help.R | 7
lessR-3.3.1/lessR/R/Histogram.R | 51 -
lessR-3.3.1/lessR/R/Logit.R | 7
lessR-3.3.1/lessR/R/Nest.R | 217 +++-
lessR-3.3.1/lessR/R/Read.R | 16
lessR-3.3.1/lessR/R/Read2.R | 2
lessR-3.3.1/lessR/R/Regression.R | 141 +-
lessR-3.3.1/lessR/R/ScatterPlot.R | 38
lessR-3.3.1/lessR/R/SummaryStats.R | 1
lessR-3.3.1/lessR/R/Write.R | 10
lessR-3.3.1/lessR/R/bc.zmain.R | 22
lessR-3.3.1/lessR/R/bx.R | 2
lessR-3.3.1/lessR/R/bx.zmain.R | 60 -
lessR-3.3.1/lessR/R/corCFA.R | 137 --
lessR-3.3.1/lessR/R/corEFA.R | 209 ++--
lessR-3.3.1/lessR/R/corFA.zknitr.R |only
lessR-3.3.1/lessR/R/corProp.R | 90 +
lessR-3.3.1/lessR/R/corReflect.R | 56 -
lessR-3.3.1/lessR/R/corReorder.R | 113 +-
lessR-3.3.1/lessR/R/corScree.R | 26
lessR-3.3.1/lessR/R/cor_mimm.R |only
lessR-3.3.1/lessR/R/cor_resid.R |only
lessR-3.3.1/lessR/R/cr.data.frame.R | 79 -
lessR-3.3.1/lessR/R/cr.zmain.R | 94 +
lessR-3.3.1/lessR/R/details.R | 5
lessR-3.3.1/lessR/R/dist.zknitr.R |only
lessR-3.3.1/lessR/R/dn.R | 2
lessR-3.3.1/lessR/R/dn.zmain.R | 34
lessR-3.3.1/lessR/R/dp.R | 2
lessR-3.3.1/lessR/R/dp.zmain.R | 3
lessR-3.3.1/lessR/R/hs.R | 2
lessR-3.3.1/lessR/R/hst.zmain.R | 68 -
lessR-3.3.1/lessR/R/lc.zmain.R | 23
lessR-3.3.1/lessR/R/print.outall.r | 5
lessR-3.3.1/lessR/R/rd.R | 2
lessR-3.3.1/lessR/R/rd.brief.R | 2
lessR-3.3.1/lessR/R/reg.R | 3
lessR-3.3.1/lessR/R/reg.brief.R | 3
lessR-3.3.1/lessR/R/reg.z1anvBasic.R | 100 +
lessR-3.3.1/lessR/R/reg.z1bckBasic.R | 6
lessR-3.3.1/lessR/R/reg.z1fitBasic.R | 49
lessR-3.3.1/lessR/R/reg.z1modelBasic.R | 16
lessR-3.3.1/lessR/R/reg.z2Relations.R | 31
lessR-3.3.1/lessR/R/reg.z3dnResidual.R | 2
lessR-3.3.1/lessR/R/reg.z3resfitResidual.R | 7
lessR-3.3.1/lessR/R/reg.z3txtResidual.R | 40
lessR-3.3.1/lessR/R/reg.z4Pred.R | 123 +-
lessR-3.3.1/lessR/R/reg.z5Plot.R | 49
lessR-3.3.1/lessR/R/reg.zknitr.R | 1453 ++++++++++++++++++++++-------
lessR-3.3.1/lessR/R/regPlot.R | 118 +-
lessR-3.3.1/lessR/R/sp.R | 2
lessR-3.3.1/lessR/R/ss.zdata.frame.R | 37
lessR-3.3.1/lessR/R/ss.zfactor.R | 23
lessR-3.3.1/lessR/R/ss.znumeric.R | 20
lessR-3.3.1/lessR/R/tAnd.R |only
lessR-3.3.1/lessR/R/tNum.R |only
lessR-3.3.1/lessR/R/tP.R |only
lessR-3.3.1/lessR/R/tRow.R |only
lessR-3.3.1/lessR/R/tt.z1group.R | 7
lessR-3.3.1/lessR/R/tt.z2group.R | 18
lessR-3.3.1/lessR/R/ttest.R | 6
lessR-3.3.1/lessR/R/zzz.R | 254 +++--
lessR-3.3.1/lessR/man/ANOVA.Rd | 16
lessR-3.3.1/lessR/man/BoxPlot.Rd | 52 -
lessR-3.3.1/lessR/man/Correlation.Rd | 34
lessR-3.3.1/lessR/man/Density.Rd | 33
lessR-3.3.1/lessR/man/Histogram.Rd | 14
lessR-3.3.1/lessR/man/Nest.Rd | 41
lessR-3.3.1/lessR/man/Read.Rd | 6
lessR-3.3.1/lessR/man/Regression.Rd | 135 +-
lessR-3.3.1/lessR/man/ScatterPlot.Rd | 12
lessR-3.3.1/lessR/man/SummaryStats.Rd | 6
lessR-3.3.1/lessR/man/corCFA.Rd | 12
lessR-3.3.1/lessR/man/corEFA.Rd | 38
lessR-3.3.1/lessR/man/corProp.Rd | 4
lessR-3.3.1/lessR/man/corReflect.Rd | 9
lessR-3.3.1/lessR/man/corReorder.Rd | 17
lessR-3.3.1/lessR/man/print_outall.Rd | 16
lessR-3.3.1/lessR/man/regPlot.Rd | 6
lessR-3.3.1/lessR/man/tAnd.Rd |only
lessR-3.3.1/lessR/man/tNum.Rd |only
lessR-3.3.1/lessR/man/tP.Rd |only
lessR-3.3.1/lessR/man/tRow.Rd |only
lessR-3.3/lessR/src |only
94 files changed, 3319 insertions(+), 1507 deletions(-)
Title: Conversion of R Regression Output to LaTeX or HTML Tables
Diff between texreg versions 1.34 dated 2014-10-31 and 1.35 dated 2015-04-28
Description: Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld
DESCRIPTION | 26 +-
MD5 | 24 +-
NAMESPACE | 7
R/extract.R | 447 +++++++++++++++++++++++++++++++++++++++++++++++----
R/internal.R | 49 ++++-
R/texreg.R | 15 -
build/vignette.rds |binary
inst/doc/v55i08.R | 46 ++---
inst/doc/v55i08.Rnw | 26 +-
inst/doc/v55i08.pdf |binary
man/extract.Rd | 70 +++++++
man/texreg.Rd | 5
vignettes/v55i08.Rnw | 26 +-
13 files changed, 622 insertions(+), 119 deletions(-)
Title: Parsimonious Gaussian Mixture Models
Diff between pgmm versions 1.1 dated 2014-07-13 and 1.2 dated 2015-04-28
Description: Carries out model-based clustering or classification using parsimonious Gaussian mixture models.
Author: Paul D. McNicholas [aut, cre], Aisha ElSherbiny [aut], K. Raju Jampani [ctb], Aaron F. McDaid [aut], T. Brendan Murphy [aut], Larry Banks [ctb]
Maintainer: Paul D. McNicholas
pgmm-1.1/pgmm/inst |only
pgmm-1.1/pgmm/src/myalloc.c |only
pgmm-1.2/pgmm/ChangeLog | 5
pgmm-1.2/pgmm/DESCRIPTION | 17
pgmm-1.2/pgmm/MD5 | 23
pgmm-1.2/pgmm/R/pgmmEM.R | 35
pgmm-1.2/pgmm/man/pgmm.Rd | 8
pgmm-1.2/pgmm/man/pgmmEM.Rd | 6
pgmm-1.2/pgmm/src/Makevars |only
pgmm-1.2/pgmm/src/aecm.c | 1496 +++++++++++++++++++++++++-----------------
pgmm-1.2/pgmm/src/functions.h | 163 ++--
pgmm-1.2/pgmm/src/gaussj.c | 236 +-----
pgmm-1.2/pgmm/src/pgmm.c | 41 -
pgmm-1.2/pgmm/src/updates.c | 865 ++++++++++++++----------
14 files changed, 1651 insertions(+), 1244 deletions(-)
Title: D3 Scatterplot Matrices
Diff between pairsD3 versions 0.0.6 dated 2015-04-08 and 0.1.0 dated 2015-04-28
Description: Creates an interactive scatterplot matrix using the D3 JavaScript library. See
Author: Garth Tarr [aut, cre]
Maintainer: Garth Tarr
pairsD3-0.0.6/pairsD3/inst/htmlwidgets/lib/pairsD3/d3.v3.min.js |only
pairsD3-0.1.0/pairsD3/DESCRIPTION | 10 +-
pairsD3-0.1.0/pairsD3/MD5 | 27 +++--
pairsD3-0.1.0/pairsD3/NAMESPACE | 2
pairsD3-0.1.0/pairsD3/NEWS |only
pairsD3-0.1.0/pairsD3/R/pairsD3.R | 26 ++++-
pairsD3-0.1.0/pairsD3/README.md | 33 ++++++-
pairsD3-0.1.0/pairsD3/inst/htmlwidgets/lib/d3 |only
pairsD3-0.1.0/pairsD3/inst/htmlwidgets/lib/pairsD3/style.css | 46 +++++-----
pairsD3-0.1.0/pairsD3/inst/htmlwidgets/pairsD3.js | 42 ++++++---
pairsD3-0.1.0/pairsD3/inst/htmlwidgets/pairsD3.yaml | 5 -
pairsD3-0.1.0/pairsD3/man/pairsD3.Rd | 13 ++
pairsD3-0.1.0/pairsD3/man/pairsD3Output.Rd | 4
pairsD3-0.1.0/pairsD3/man/renderPairsD3.Rd | 2
pairsD3-0.1.0/pairsD3/man/savePairs.Rd | 2
pairsD3-0.1.0/pairsD3/man/shinypairs.Rd | 2
16 files changed, 143 insertions(+), 71 deletions(-)
Title: Empirical Likelihood Ratio for Censored/Truncated Data
Diff between emplik versions 0.9-9-6 dated 2014-08-26 and 1.0-1 dated 2015-04-28
Description: Empirical likelihood ratio tests for means/quantiles/hazards
from possibly censored and/or truncated data. Now does regression too.
This version contains some C code.
Author: Mai Zhou. (Art Owen for el.test(). Yifan Yang for C code.)
Maintainer: Mai Zhou
DESCRIPTION | 15 ++++----
MD5 | 45 ++++++++++++++------------
NAMESPACE | 8 ++--
R/DnR.R | 5 +-
R/RankRegTest.R | 2 -
R/RankRegTestH.R |only
R/WCY.R | 4 +-
R/WKM.R | 2 -
R/WRegTest.R | 6 +--
R/Wdataclean3.R | 6 +--
R/Wdataclean5.R | 6 +--
R/bjtestII.R |only
R/cumsumsurv.R | 4 +-
R/el.cen.EM.R | 56 +++++----------------------------
R/el.cen.EM2.R | 22 ++++++------
R/el.ltrc.EM.R | 6 +--
R/el.test.wt.R | 8 ++--
R/el.test.wt2.R | 14 --------
R/emplikHs.test22.R |only
R/iter.R | 26 +++++++--------
README | 18 +++++-----
man/RankRegTestH.Rd |only
man/WRegTest.Rd | 4 +-
man/bjtestII.Rd |only
man/emplik-internal.Rd | 15 +++++++-
src/cumsumsurv.c | 83 +++++++++++++------------------------------------
26 files changed, 143 insertions(+), 212 deletions(-)