Title: 'TSdbi' Database Comparison
Diff between TScompare versions 2013.9-1 dated 2013-09-29 and 2015.4-1 dated 2015-04-30
Description: Utilities for comparing the equality of series on two databases.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 22 +++++++++++-----------
MD5 | 14 +++++++++-----
NAMESPACE | 1 +
NEWS | 10 ++++++++++
R/TScompare.R | 10 +++++-----
build/vignette.rds |binary
inst/testWithDatabases |only
inst/testWithInternet |only
8 files changed, 36 insertions(+), 21 deletions(-)
Title: Regression Modeling Strategies
Diff between rms versions 4.3-0 dated 2015-02-16 and 4.3-1 dated 2015-04-30
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. rms is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. rms works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 12 -
MD5 | 42 ++---
NAMESPACE | 6
NEWS | 12 +
R/Rq.s | 18 +-
R/bplot.s | 11 -
R/contrast.s | 2
R/ggplot.Predict.s | 413 +++++++++++++++++++++++++++-----------------------
R/lrm.fit.s | 11 -
R/orm.fit.s | 7
R/plot.Predict.s | 16 -
R/predictrms.s | 2
R/summary.rms.s | 4
R/survplot.npsurv.s | 46 +++++
R/val.surv.s | 6
R/validate.rpart.s | 4
man/Rq.Rd | 5
man/bplot.Rd | 2
man/ggplot.Predict.Rd | 43 +++--
man/survplot.Rd | 8
tests/Rq.s | 2
tests/ggplot2.r | 34 +++-
22 files changed, 419 insertions(+), 287 deletions(-)
Title: Network Dynamic Temporal Visualizations
Diff between ndtv versions 0.5.1 dated 2014-01-31 and 0.6.1 dated 2015-04-30
Description: Renders dynamic network data from "networkDynamic" objects as animated movies or other representations of relational structure and node attributes that change over time.
Author: Skye Bender-deMoll [cre, aut],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll
ndtv-0.5.1/ndtv/exec |only
ndtv-0.5.1/ndtv/vignettes/ndtv.pdf |only
ndtv-0.6.1/ndtv/ChangeLog | 11
ndtv-0.6.1/ndtv/DESCRIPTION | 21 -
ndtv-0.6.1/ndtv/MD5 | 70 +++--
ndtv-0.6.1/ndtv/NAMESPACE | 3
ndtv-0.6.1/ndtv/R/animate.layouts.R | 62 ++++-
ndtv-0.6.1/ndtv/R/export.dot.R | 46 ++-
ndtv-0.6.1/ndtv/R/export.movie.R | 36 +--
ndtv-0.6.1/ndtv/R/installers.R | 14 -
ndtv-0.6.1/ndtv/R/proximity.timeline.R | 283 +++++++++++++++++-------
ndtv-0.6.1/ndtv/R/render.d3_animation.R |only
ndtv-0.6.1/ndtv/R/tea_utils.R | 105 +++++++-
ndtv-0.6.1/ndtv/build |only
ndtv-0.6.1/ndtv/data/toy_epi_sim.rda |only
ndtv-0.6.1/ndtv/inst/doc/ndtv.R |only
ndtv-0.6.1/ndtv/inst/doc/ndtv.Rnw |only
ndtv-0.6.1/ndtv/inst/doc/ndtv.pdf |binary
ndtv-0.6.1/ndtv/inst/java |only
ndtv-0.6.1/ndtv/inst/javascript |only
ndtv-0.6.1/ndtv/java |only
ndtv-0.6.1/ndtv/man/export.dot.Rd | 4
ndtv-0.6.1/ndtv/man/export.pajek.net.Rd | 1
ndtv-0.6.1/ndtv/man/msm.sim.Rd | 6
ndtv-0.6.1/ndtv/man/ndtv-package.Rd | 39 ++-
ndtv-0.6.1/ndtv/man/network.layout.animate.Rd | 12 -
ndtv-0.6.1/ndtv/man/proximity.timeline.Rd | 77 +++++-
ndtv-0.6.1/ndtv/man/render.animation.Rd | 8
ndtv-0.6.1/ndtv/man/render.d3movie.Rd |only
ndtv-0.6.1/ndtv/man/timeline.Rd | 65 ++++-
ndtv-0.6.1/ndtv/man/toy_epi_sim.Rd |only
ndtv-0.6.1/ndtv/tests/d3_animation_tests.R |only
ndtv-0.6.1/ndtv/tests/layout_tests.R | 52 ++++
ndtv-0.6.1/ndtv/tests/proximity.timeline_test.R | 91 +++++++
ndtv-0.6.1/ndtv/tests/timeline_test.R | 31 ++
ndtv-0.6.1/ndtv/vignettes/ndtv.Rnw | 145 ++++++++++--
36 files changed, 935 insertions(+), 247 deletions(-)
Title: Row-Based Functions for R Objects
Diff between rowr versions 1.1.1 dated 2014-11-26 and 1.1.2 dated 2015-04-30
Description: Allows the manipulation of R objects as if they were
organized rows in a way that is familiar to people used to working with
databases. It allows more consistent and predictable output to common
functions, and generalizes a number of utility functions to to be failsafe
with any number and type of input objects.
Author: Craig Varrichio
Maintainer: Craig Varrichio
DESCRIPTION | 14 +++++++-------
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 2 +-
R/rowr.R | 8 +++++---
man/as2.Rd | 3 ++-
man/buffer.Rd | 3 ++-
man/cbind.fill.Rd | 4 +++-
man/coalesce.Rd | 3 ++-
man/count.Rd | 3 ++-
man/insertRows.Rd | 3 ++-
man/len.Rd | 3 ++-
man/rollApply.Rd | 3 ++-
man/rowApply.Rd | 3 ++-
man/rowr.Rd | 5 +++--
man/rows.Rd | 3 ++-
man/vectorize.Rd | 3 ++-
16 files changed, 54 insertions(+), 39 deletions(-)
Title: Analyze Multinomial Processing Tree Models
Diff between MPTinR versions 1.7.5 dated 2015-03-22 and 1.8.0 dated 2015-04-30
Description: Provides a user-friendly way for the analysis of multinomial processing tree (MPT) models (e.g., Riefer, D. M., and Batchelder, W. H. [1988]. Multinomial modeling and the measurement of cognitive processes. Psychological Review, 95, 318-339) for single and multiple datasets. The main functions perform model fitting and model selection. Model selection can be done using AIC, BIC, or the Fisher Information Approximation (FIA) a measure based on the Minimum Description Length (MDL) framework. The model and restrictions can be specified in external files or within an R script in an intuitive syntax or using the context-free language for MPTs. The 'classical' .EQN file format for model files is also supported. Besides MPTs, this package can fit a wide variety of other cognitive models such as SDT models (see fit.model). It also supports multicore fitting and FIA calculation (using the snowfall package), can generate or bootstrap data for simulations, and plot predicted versus observed data.
Author: Henrik Singmann [aut, cre],
David Kellen [aut],
Quentin Gronau [aut],
Christian Mueller [ctb],
Akhil S Bhel [ctb]
Maintainer: Henrik Singmann
DESCRIPTION | 15 ++++++---------
MD5 | 18 +++++++++---------
NEWS | 20 ++++++++++++++++++++
R/prepare.mpt.fia.R | 11 ++++++++---
data/d.broeder.rda |binary
data/rb.fig1.data.rda |binary
data/rb.fig2.data.rda |binary
man/MPTinR-package.Rd | 6 +++---
src/determinant.cpp | 5 ++++-
src/determinant_c.cpp | 2 +-
10 files changed, 51 insertions(+), 26 deletions(-)
Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Diff between MixGHD versions 1.4 dated 2015-03-04 and 1.5 dated 2015-04-30
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution.The first model 'MGHD' is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD', mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' is a 'MSGHD' with convex contour plots. The 'MCGHD', mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora, Ryan P. Browne, Brian C. Franczak and Paul D. McNicholas.
Maintainer: Cristina Tortora
DESCRIPTION | 12 -
MD5 | 34 +--
NAMESPACE | 1
R/GHD.R | 427 ++++++++++++++++++++++++++++++++------------------
R/MCGHD.R | 7
R/MGHD.R | 12 -
R/MGHFA.R | 2
R/MSGHD.R | 8
R/Selection.R | 129 +++++++++++++--
R/cMSGHD.R | 9 -
man/DA.Rd | 4
man/MCGHD.Rd | 12 -
man/MGHD.Rd | 3
man/MGHFA.Rd | 2
man/MSGHD.Rd | 15 -
man/MixGHD-package.Rd | 14 -
man/Selection.Rd | 4
man/cMSGHD.Rd | 3
18 files changed, 469 insertions(+), 229 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems
Diff between LLSR versions 0.0.1.9015 dated 2015-03-12 and 0.0.1.9225 dated 2015-04-30
Description: The methods implemented here were based in the protocol proposed by Merchuk et al. (1998) and Murugesan & Perumalsamy (2005) to analyse Aqueous Two-Phases Systems. Each function brings in its description the reference for the original article which described it. These methods defines nonlinear equations that can be used to fit experimental data through regression methods and also allow us calculate other important system parameters (such as its critical composition, equivolume concentration and phase's composition). The package will include (every other update) new functions in order to comprise useful functions in liquid-liquid analysis.
Author: Diego F Coelho
Maintainer: Diego F Coelho
LLSR-0.0.1.9015/LLSR/R/gsnchk.R |only
LLSR-0.0.1.9015/LLSR/R/mrchk.R |only
LLSR-0.0.1.9015/LLSR/R/mrgsn.R |only
LLSR-0.0.1.9015/LLSR/R/plotll.R |only
LLSR-0.0.1.9015/LLSR/R/xyJn.R |only
LLSR-0.0.1.9015/LLSR/man/gsnchk.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrchk.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrchk.crpt.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrchk.plot.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrchk.tielines.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrgsn.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrgsn.bancroft.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrgsn.othmer.Rd |only
LLSR-0.0.1.9015/LLSR/man/mrgsn.plot.Rd |only
LLSR-0.0.1.9015/LLSR/man/plotll.Rd |only
LLSR-0.0.1.9015/LLSR/man/xyJn.Rd |only
LLSR-0.0.1.9225/LLSR/DESCRIPTION | 11 +---
LLSR-0.0.1.9225/LLSR/MD5 | 58 +++++++++++++---------
LLSR-0.0.1.9225/LLSR/NAMESPACE | 48 +++++++++---------
LLSR-0.0.1.9225/LLSR/R/AQSearch.CAS.R |only
LLSR-0.0.1.9225/LLSR/R/AQSearch.R |only
LLSR-0.0.1.9225/LLSR/R/AQSearchUtils.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.err.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.gsnchk.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.mathDesc.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.mrchk.R |only
LLSR-0.0.1.9225/LLSR/R/AQSys.mrgsn.R |only
LLSR-0.0.1.9225/LLSR/R/AQSysCurve.R |only
LLSR-0.0.1.9225/LLSR/R/AQSysDB.R |only
LLSR-0.0.1.9225/LLSR/R/AQSysFormulas.R |only
LLSR-0.0.1.9225/LLSR/R/AQSysUtils.R |only
LLSR-0.0.1.9225/LLSR/R/LLSRUtils.R |only
LLSR-0.0.1.9225/LLSR/R/LLSRxy.R |only
LLSR-0.0.1.9225/LLSR/R/datasets.R | 38 +++++++-------
LLSR-0.0.1.9225/LLSR/README.md |only
LLSR-0.0.1.9225/LLSR/man/AQSearch.CAS.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSearch.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSys.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSys.crpt.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSys.gsnchk.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSys.plot.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSys.tielines.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSysBancroft.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSysCurve.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSysDB.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSysList.Rd |only
LLSR-0.0.1.9225/LLSR/man/AQSysOthmer.Rd |only
LLSR-0.0.1.9225/LLSR/man/LLSR.info.Rd |only
LLSR-0.0.1.9225/LLSR/man/LLSRxy.Rd |only
LLSR-0.0.1.9225/LLSR/man/peg4kslt.Rd | 52 +++++++++----------
LLSR-0.0.1.9225/LLSR/tests/testthat.R | 8 +--
LLSR-0.0.1.9225/LLSR/tests/testthat/testMainFns.R | 26 ++++-----
53 files changed, 129 insertions(+), 112 deletions(-)
Title: Multivariate Adaptive Regression Splines
Diff between earth versions 4.2.0 dated 2015-01-12 and 4.3.0 dated 2015-04-30
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow
earth-4.2.0/earth/.Rinstignore |only
earth-4.2.0/earth/R/plot.model.selection.R |only
earth-4.2.0/earth/R/plotmor.R |only
earth-4.3.0/earth/DESCRIPTION | 8
earth-4.3.0/earth/MD5 | 171
earth-4.3.0/earth/NAMESPACE | 21
earth-4.3.0/earth/NEWS | 12
earth-4.3.0/earth/R/as.char.R |only
earth-4.3.0/earth/R/call.dots.R |only
earth-4.3.0/earth/R/check.index.R |only
earth-4.3.0/earth/R/do.par.R |only
earth-4.3.0/earth/R/dot.R |only
earth-4.3.0/earth/R/dotlib.R |only
earth-4.3.0/earth/R/earth.R | 396
earth-4.3.0/earth/R/earth.cv.R | 84
earth-4.3.0/earth/R/earth.cv.lib.R | 4
earth-4.3.0/earth/R/earth.glm.R | 91
earth-4.3.0/earth/R/earth.methods.R | 22
earth-4.3.0/earth/R/earth.regress.R | 28
earth-4.3.0/earth/R/earthlib.R | 651 -
earth-4.3.0/earth/R/elegend.R | 58
earth-4.3.0/earth/R/evimp.R | 76
earth-4.3.0/earth/R/expand.arg.R | 41
earth-4.3.0/earth/R/format.earth.R | 86
earth-4.3.0/earth/R/lib.R |only
earth-4.3.0/earth/R/mars.to.earth.R | 43
earth-4.3.0/earth/R/model.matrix.earth.R | 176
earth-4.3.0/earth/R/plot.earth.R | 1002 +
earth-4.3.0/earth/R/plotd.R | 581 -
earth-4.3.0/earth/R/plotmo.methods.earth.R | 54
earth-4.3.0/earth/R/predict.earth.R | 47
earth-4.3.0/earth/R/print.earth.R | 74
earth-4.3.0/earth/R/printcall.R |only
earth-4.3.0/earth/R/residuals.earth.R | 99
earth-4.3.0/earth/R/stop.if.dots.R |only
earth-4.3.0/earth/R/varmod.R | 437
earth-4.3.0/earth/inst/doc/earth-notes.pdf |binary
earth-4.3.0/earth/inst/doc/earth-varmod.pdf |binary
earth-4.3.0/earth/inst/slowtests/earth.times.bat | 2
earth-4.3.0/earth/inst/slowtests/make.bat | 18
earth-4.3.0/earth/inst/slowtests/test.big.R | 41
earth-4.3.0/earth/inst/slowtests/test.big.Rout.save | 273
earth-4.3.0/earth/inst/slowtests/test.big.bat | 7
earth-4.3.0/earth/inst/slowtests/test.cv.R | 13
earth-4.3.0/earth/inst/slowtests/test.cv.Rout.save | 130
earth-4.3.0/earth/inst/slowtests/test.cv.bat | 7
earth-4.3.0/earth/inst/slowtests/test.earthc.bat | 11
earth-4.3.0/earth/inst/slowtests/test.earthc.mak | 2
earth-4.3.0/earth/inst/slowtests/test.earthc.out.save | 186
earth-4.3.0/earth/inst/slowtests/test.earthmain.clang.bat | 13
earth-4.3.0/earth/inst/slowtests/test.earthmain.gcc.bat | 11
earth-4.3.0/earth/inst/slowtests/test.earthmain.gcc64.bat |only
earth-4.3.0/earth/inst/slowtests/test.earthmain.out.save | 6
earth-4.3.0/earth/inst/slowtests/test.earthmain.vc.bat | 12
earth-4.3.0/earth/inst/slowtests/test.full.R | 174
earth-4.3.0/earth/inst/slowtests/test.full.Rout.save | 6825 +++---------
earth-4.3.0/earth/inst/slowtests/test.full.bat | 7
earth-4.3.0/earth/inst/slowtests/test.glm.R | 69
earth-4.3.0/earth/inst/slowtests/test.glm.Rout.save | 5249 ++-------
earth-4.3.0/earth/inst/slowtests/test.glm.bat | 7
earth-4.3.0/earth/inst/slowtests/test.mods.R | 4
earth-4.3.0/earth/inst/slowtests/test.mods.Rout.save | 11
earth-4.3.0/earth/inst/slowtests/test.mods.bat | 7
earth-4.3.0/earth/inst/slowtests/test.plotd.R | 70
earth-4.3.0/earth/inst/slowtests/test.plotd.Rout.save | 269
earth-4.3.0/earth/inst/slowtests/test.plotd.bat | 7
earth-4.3.0/earth/inst/slowtests/test.varmod.R | 92
earth-4.3.0/earth/inst/slowtests/test.varmod.Rout.save | 486
earth-4.3.0/earth/inst/slowtests/test.varmod.bat | 7
earth-4.3.0/earth/inst/slowtests/test.varmod.mgcv.R |only
earth-4.3.0/earth/inst/slowtests/test.varmod.mgcv.Rout.save |only
earth-4.3.0/earth/inst/slowtests/test.varmod.mgcv.bat |only
earth-4.3.0/earth/inst/slowtests/test.weights.R | 47
earth-4.3.0/earth/inst/slowtests/test.weights.Rout.save | 120
earth-4.3.0/earth/inst/slowtests/test.weights.bat | 7
earth-4.3.0/earth/man/contr.earth.response.Rd | 2
earth-4.3.0/earth/man/earth.Rd | 82
earth-4.3.0/earth/man/evimp.Rd | 6
earth-4.3.0/earth/man/format.earth.Rd | 2
earth-4.3.0/earth/man/model.matrix.earth.Rd | 2
earth-4.3.0/earth/man/ozone1.Rd | 4
earth-4.3.0/earth/man/plot.earth.Rd | 529
earth-4.3.0/earth/man/plot.earth.models.Rd | 78
earth-4.3.0/earth/man/plot.evimp.Rd | 9
earth-4.3.0/earth/man/plot.varmod.Rd | 30
earth-4.3.0/earth/man/plotd.Rd | 41
earth-4.3.0/earth/man/predict.earth.Rd | 10
earth-4.3.0/earth/man/predict.varmod.Rd | 2
earth-4.3.0/earth/man/residuals.earth.Rd | 6
earth-4.3.0/earth/man/summary.earth.Rd | 17
earth-4.3.0/earth/man/update.earth.Rd | 2
earth-4.3.0/earth/man/varmod.Rd | 11
earth-4.3.0/earth/src/earth.c | 362
earth-4.3.0/earth/src/earth.h | 12
earth-4.3.0/earth/src/leaps.f | 1810 +--
95 files changed, 7514 insertions(+), 13955 deletions(-)
Title: Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Diff between constrainedKriging versions 0.2.3 dated 2014-05-26 and 0.2.4 dated 2015-04-30
More information about constrainedKriging at CRAN
Description: Provides functions for
efficient computations of nonlinear spatial predictions with
local change of support. This package supplies functions for
tow-dimensional spatial interpolation by constrained,
covariance-matching constrained and universal (external drift)
kriging for points or block of any shape for data with a
nonstationary mean function and an isotropic weakly stationary
variogram. The linear spatial interpolation methods,
constrained and covariance-matching constrained kriging,
provide approximately unbiased prediction for nonlinear target
values under change of support. This package
extends the range of geostatistical tools available in R and
provides a veritable alternative to conditional simulation for
nonlinear spatial prediction problems with local change of
support.
Author: Christoph Hofer
Maintainer: Christoph Hofer
DESCRIPTION | 18 +++---
MD5 | 28 ++++-----
NAMESPACE | 13 ++++
R/f.bb.cov.one.configuration.R | 18 +++---
R/f.build.pixel.R | 8 +-
R/f.calc.Q.R | 2
R/f.covmat.support.R | 43 ++++++++++++++-
R/f.kriging.functions.R | 116 ++++++++++++++++++++++++++++++++++++++++-
R/f.kriging.method.R | 31 ++++++++++
R/f.pixconfig.R | 8 +-
R/f.point.block.cov.R | 26 ++++-----
R/f.points.CKrige.R | 4 -
R/f.polygoncovmat.R | 10 +--
R/f.polygons.CKrige.R | 4 -
inst/ChangeLog.txt | 2
15 files changed, 265 insertions(+), 66 deletions(-)
Permanent link
Title: Compare Two ROC Curves that Intersect
Diff between Comp2ROC versions 1.0 dated 2013-05-20 and 1.1 dated 2015-04-30
Description: Comparison of two ROC curves throughout the methodology propose by Ana C. Braga.
Author: Ana C. Braga with contributions from Hugo Frade and Sara Carvalho
Maintainer: Ana C. Braga
DESCRIPTION | 16 -
MD5 | 70 ++---
NAMESPACE | 4
R/areatriangles.R | 48 +--
R/comp.roc.curves.R | 112 ++++-----
R/comp.roc.delong.R | 214 ++++++++++-------
R/curvesegslope.R | 24 -
R/curvesegsloperef.R | 24 -
R/diffareatriangles.R | 22 -
R/linedistance.R | 50 ++--
R/lineslope.R | 18 -
R/read.file.R | 105 +++++---
R/read.manually.introduced.R | 62 ++---
R/roc.curves.boot.R | 496 ++++++++++++++++++++--------------------
R/roc.curves.plot.R | 20 -
R/rocboot.summary.R | 70 ++---
R/rocsampling.R | 118 ++++-----
R/rocsampling.summary.R | 16 -
R/save.file.summary.R | 72 ++---
man/Comp2ROC-package.Rd | 89 +++----
man/areatriangles.Rd | 69 ++---
man/comp.roc.curves.Rd | 86 +++---
man/comp.roc.delong.Rd | 120 ++++-----
man/curvesegslope.Rd | 57 ++--
man/curvesegsloperef.Rd | 63 ++---
man/diffareatriangles.Rd | 67 ++---
man/linedistance.Rd | 100 ++++----
man/lineslope.Rd | 58 ++--
man/read.file.Rd | 139 +++++------
man/read.manually.introduced.Rd | 126 +++++-----
man/roc.curves.boot.Rd | 136 +++++-----
man/roc.curves.plot.Rd | 101 +++-----
man/rocboot.summary.Rd | 79 +++---
man/rocsampling.Rd | 125 ++++------
man/rocsampling.summary.Rd | 62 ++---
man/save.file.summary.Rd | 118 ++++-----
36 files changed, 1608 insertions(+), 1548 deletions(-)
Title: 'TSdbi' Extensions for 'SQLite'
Diff between TSSQLite versions 2013.9-1 dated 2013-09-29 and 2015.4-1 dated 2015-04-30
Description: An 'SQLite' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSSQLite-2013.9-1/TSSQLite/tests |only
TSSQLite-2015.4-1/TSSQLite/DESCRIPTION | 21 +--
TSSQLite-2015.4-1/TSSQLite/MD5 | 16 +-
TSSQLite-2015.4-1/TSSQLite/NAMESPACE | 7 -
TSSQLite-2015.4-1/TSSQLite/NEWS | 17 +++
TSSQLite-2015.4-1/TSSQLite/R/TSdbiMethods.R | 33 +++--
TSSQLite-2015.4-1/TSSQLite/build/vignette.rds |binary
TSSQLite-2015.4-1/TSSQLite/inst/testWithInternet |only
TSSQLite-2015.4-1/TSSQLite/inst/testWithSQLiteServer |only
TSSQLite-2015.4-1/TSSQLite/man/TSdbiMethods.Rd | 105 ++++++++-----------
10 files changed, 103 insertions(+), 96 deletions(-)
Title: 'TSdbi' Extensions for 'PostgreSQL'
Diff between TSPostgreSQL versions 2013.9-1 dated 2013-09-29 and 2015.4-1 dated 2015-04-30
Description: A 'PostgreSQL' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 21 ++++++++--------
MD5 | 14 ++++++----
NAMESPACE | 7 +++--
NEWS | 16 ++++++++++++
R/TSdbiMethods.R | 28 +++++++++------------
build/vignette.rds |binary
inst/testWithInternet |only
inst/testWithPostgreSQLserver |only
man/TSdbiMethods.Rd | 55 +++++++++++++-----------------------------
9 files changed, 70 insertions(+), 71 deletions(-)
Title: 'TSdbi' Extensions for ODBC
Diff between TSodbc versions 2013.9-1 dated 2013-09-29 and 2015.4-1 dated 2015-04-30
Description: An ODBC interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 21 ++++-----
MD5 | 15 ++++--
NAMESPACE | 10 +---
NEWS | 26 +++++++++++
R/TSdbiMethods.R | 108 ++++++++++++++++++++----------------------------
build/vignette.rds |binary
inst/testWithInternet |only
inst/testWithODBCserver |only
man/Internal.Rd |only
man/TSdbiMethods.Rd | 74 +++++++-------------------------
10 files changed, 111 insertions(+), 143 deletions(-)
Title: 'TSdbi' Extensions for Fame
Diff between TSfame versions 2013.8-2 dated 2013-09-29 and 2015.4-1 dated 2015-04-30
Description: A 'fame' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSfame-2013.8-2/TSfame/tests |only
TSfame-2015.4-1/TSfame/DESCRIPTION | 20 +++---
TSfame-2015.4-1/TSfame/MD5 | 27 ++++----
TSfame-2015.4-1/TSfame/NAMESPACE | 8 --
TSfame-2015.4-1/TSfame/NEWS | 18 +++++
TSfame-2015.4-1/TSfame/R/TSdbiMethods.R | 71 +++++++++++++---------
TSfame-2015.4-1/TSfame/R/TSdbiMethodsFS.R | 27 +++-----
TSfame-2015.4-1/TSfame/build/vignette.rds |binary
TSfame-2015.4-1/TSfame/inst/testWithFame |only
TSfame-2015.4-1/TSfame/man/Internal.Rd |only
TSfame-2015.4-1/TSfame/man/TSdbiMethods.Rd | 91 ++++++++++++-----------------
11 files changed, 134 insertions(+), 128 deletions(-)
Title: Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Diff between TripleR versions 1.4 dated 2014-09-09 and 1.4.1 dated 2015-04-30
Description: Social Relation Model (SRM) analyses for single or multiple
round-robin groups are performed. These analyses are either based on one
manifest variable, one latent construct measured by two manifest variables,
two manifest variables and their bivariate relations, or two latent
constructs each measured by two manifest variables. Within-group t-tests
for variance components and covariances are provided for single groups,
between-groups t-tests for multiple groups. Handling for missing values is
provided.
Author: F. D. Schönbrodt, M. D. Back, S. C. Schmukle
Maintainer: Felix Schönbrodt
DESCRIPTION | 12 ++++++------
MD5 | 12 ++++++------
NAMESPACE | 2 +-
NEWS | 6 ++++++
R/RR.r | 5 ++++-
R/long2matrix.R | 2 +-
inst/CITATION | 16 +++++++++++++++-
7 files changed, 39 insertions(+), 16 deletions(-)
Title: R-to-Java Interface for 'CMA-ES'
Diff between rCMA versions 1.0.0 dated 2013-03-01 and 1.1 dated 2015-04-30
Description: Tool for providing access to the Java version 'CMAEvolutionStrategy' of
Nikolaus Hansen. 'CMA-ES' is the Covariance Matrix Adaptation Evolution Strategy,
see https://www.lri.fr/~hansen/cmaes_inmatlab.html#java.
Author: Wolfgang Konen
Maintainer: Wolfgang Konen
rCMA-1.0.0/rCMA/demo/demoRJavaTR2.r |only
rCMA-1.1/rCMA/DESCRIPTION | 22 ++--
rCMA-1.1/rCMA/MD5 | 56 +++++++----
rCMA-1.1/rCMA/NAMESPACE | 2
rCMA-1.1/rCMA/R/cmaEvalMeanX.R | 53 ++++++----
rCMA-1.1/rCMA/R/cmaGetters.R | 22 ++--
rCMA-1.1/rCMA/R/rCMA.R | 116 +++++++++++++----------
rCMA-1.1/rCMA/demo/demoCMA2.R | 30 ++++--
rCMA-1.1/rCMA/demo/demoEvalMeanX.R | 17 ++-
rCMA-1.1/rCMA/demo/demoRJavaTR2.R |only
rCMA-1.1/rCMA/inst/doc/aareadme.txt |only
rCMA-1.1/rCMA/inst/doc/changes.html |only
rCMA-1.1/rCMA/inst/doc/index.html | 104 ++++++---------------
rCMA-1.1/rCMA/inst/doc/rCMA-tutorial.pdf |only
rCMA-1.1/rCMA/java |only
rCMA-1.1/rCMA/man/cmaCalcFitness.Rd | 25 ++---
rCMA-1.1/rCMA/man/cmaEvalMeanX.Rd | 141 +++++++++++++++--------------
rCMA-1.1/rCMA/man/cmaInit.Rd | 47 ++++-----
rCMA-1.1/rCMA/man/cmaNew.Rd | 33 ++----
rCMA-1.1/rCMA/man/cmaOptimDP.Rd | 132 +++++++++++++--------------
rCMA-1.1/rCMA/man/cmaSamplePopulation.Rd | 31 ++----
rCMA-1.1/rCMA/man/cmaSetDimension.Rd | 58 +++++------
rCMA-1.1/rCMA/man/cmaSetStopFitness.Rd | 56 +++++------
rCMA-1.1/rCMA/man/cmaUpdateDistribution.Rd | 23 ++--
rCMA-1.1/rCMA/man/rCMA-package.Rd | 79 +++++++---------
25 files changed, 524 insertions(+), 523 deletions(-)
Title: Calculate Indices and Theoretical Properties of Protein
Sequences
Diff between Peptides versions 1.0.3 dated 2014-12-15 and 1.0.4 dated 2015-04-30
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio
DESCRIPTION | 10 +++++-----
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 2 ++
NEWS | 3 +++
R/AAcomp.R | 1 +
R/Boman.R | 3 ++-
R/MW.R | 1 +
R/aindex.R | 1 +
R/charge.R | 5 +++--
R/hmoment.R | 3 ++-
R/hydrophobicity.R | 3 ++-
R/instaindex.R | 12 +++++-------
R/lengthpep.R | 1 +
R/membpos.R | 3 ++-
R/pI.R | 1 +
man/Peptides-package.Rd | 8 ++++----
16 files changed, 50 insertions(+), 37 deletions(-)
Title: Bayesian Analysis of qRT-PCR Data
Diff between MCMC.qpcr versions 1.1.5 dated 2015-01-27 and 1.1.7 dated 2015-04-30
Description: Quantitative RT-PCR data are analyzed using generalized linear mixed models based on lognormal-Poisson error distribution, fitted using MCMC. Control genes are not required but can be incorporated as Bayesian priors or, when template abundances correlate with conditions, as trackers of global effects (common to all genes). The package also implements a lognormal model for higher-abundance data and a "classic" model involving multi-gene normalization on a by-sample basis. Several plotting functions are included to extract and visualize results. The detailed tutorial is available here: http://www.bio.utexas.edu/research/matz_lab/matzlab/Methods_files/mcmc.qpcr.tutorial.pdf.
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz
DESCRIPTION | 12 ++++++------
MD5 | 8 ++++----
R/mcmc.qpcr.R | 17 ++++++++++++-----
man/MCMC.qpcr-package.Rd | 4 ++--
man/mcmc.qpcr.Rd | 22 ++++++++++++++++------
5 files changed, 40 insertions(+), 23 deletions(-)
Title: Meta Analysis via Shiny
Diff between MAVIS versions 1.0 dated 2014-11-28 and 1.1 dated 2015-04-30
Description: Interactive shiny application for running a meta-analysis,
provides support for both random effects and fixed effects models with the 'metafor' package.
Additional support is included for calculating effect sizes plus
support for single case designs, graphical output, and detecting publication bias.
Author: Authors@R: c(person("William Kyle", "Hamilton", role = c("aut", "cre"),
email = "kyle.hamilton@gmail.com"),
person("Atsushi", "Mizumoto", role = "aut"),
person("Burak", "Aydin", role = c("ctb", "trl"),
person("Kathleen", "Coburn", role = "ctb"))
Maintainer: William Kyle Hamilton
DESCRIPTION | 23 -
MD5 | 14
NAMESPACE | 3
NEWS |only
R/MAVIS.R | 7
README.md | 34 ++
inst/CITATION |only
inst/shiny/server.R | 782 ++++++++++++++++++++++++++++++++++++----------------
inst/shiny/ui.R | 601 ++++++++++++++++++++++++++++++---------
9 files changed, 1067 insertions(+), 397 deletions(-)
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Diff between glmmLasso versions 1.3.3 dated 2014-09-11 and 1.3.4 dated 2015-04-30
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll
DESCRIPTION | 14 ++++----
MD5 | 8 ++--
R/glmmLasso.r | 77 ++++++++++++++++++++++++++++++------------------
demo/glmmLasso-soccer.r | 14 ++++----
man/glmmLasso.rd | 25 ++++++---------
5 files changed, 78 insertions(+), 60 deletions(-)
Title: Create Diagrams and Flowcharts Using R
Diff between DiagrammeR versions 0.5 dated 2015-03-19 and 0.6 dated 2015-04-30
Description: Allows to create diagrams and flowcharts using R.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone
DiagrammeR-0.5/DiagrammeR/R/graphviz_nodes_edges_df.R |only
DiagrammeR-0.5/DiagrammeR/R/graphviz_single_df.R |only
DiagrammeR-0.5/DiagrammeR/man/graphviz_nodes_edges_df.Rd |only
DiagrammeR-0.5/DiagrammeR/man/graphviz_single_df.Rd |only
DiagrammeR-0.6/DiagrammeR/DESCRIPTION | 21
DiagrammeR-0.6/DiagrammeR/MD5 | 60
DiagrammeR-0.6/DiagrammeR/NAMESPACE | 15
DiagrammeR-0.6/DiagrammeR/R/combine_edges.R |only
DiagrammeR-0.6/DiagrammeR/R/combine_nodes.R |only
DiagrammeR-0.6/DiagrammeR/R/create_edges.R |only
DiagrammeR-0.6/DiagrammeR/R/create_nodes.R |only
DiagrammeR-0.6/DiagrammeR/R/get_nodes.R |only
DiagrammeR-0.6/DiagrammeR/R/graphviz_export.R | 2
DiagrammeR-0.6/DiagrammeR/R/graphviz_graph.R |only
DiagrammeR-0.6/DiagrammeR/R/graphviz_render.R |only
DiagrammeR-0.6/DiagrammeR/R/node_info.R |only
DiagrammeR-0.6/DiagrammeR/R/scale_edges.R |only
DiagrammeR-0.6/DiagrammeR/R/scale_nodes.R |only
DiagrammeR-0.6/DiagrammeR/README.md | 901 ++++++----
DiagrammeR-0.6/DiagrammeR/inst/doc/DiagrammeR.html | 34
DiagrammeR-0.6/DiagrammeR/inst/htmlwidgets/DiagrammeR.js | 9
DiagrammeR-0.6/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.css | 5
DiagrammeR-0.6/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.slim.min.js | 26
DiagrammeR-0.6/DiagrammeR/man/DiagrammeR.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/DiagrammeROutput.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/combine_edges.Rd |only
DiagrammeR-0.6/DiagrammeR/man/combine_nodes.Rd |only
DiagrammeR-0.6/DiagrammeR/man/create_edges.Rd |only
DiagrammeR-0.6/DiagrammeR/man/create_nodes.Rd |only
DiagrammeR-0.6/DiagrammeR/man/exportSVG.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/get_nodes.Rd |only
DiagrammeR-0.6/DiagrammeR/man/grViz.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/grVizOutput.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/graphviz_graph.Rd |only
DiagrammeR-0.6/DiagrammeR/man/graphviz_render.Rd |only
DiagrammeR-0.6/DiagrammeR/man/mermaid.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/node_info.Rd |only
DiagrammeR-0.6/DiagrammeR/man/renderDiagrammeR.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/renderGrViz.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/replace_in_spec.Rd | 2
DiagrammeR-0.6/DiagrammeR/man/scale_edges.Rd |only
DiagrammeR-0.6/DiagrammeR/man/scale_nodes.Rd |only
DiagrammeR-0.6/DiagrammeR/man/x11_hex.Rd | 2
43 files changed, 682 insertions(+), 411 deletions(-)
Title: Simple, Consistent Wrappers for Common String Operations
Diff between stringr versions 0.6.2 dated 2012-12-06 and 1.0.0 dated 2015-04-30
Description: A consistent, simple and easy to use set of wrappers around the
fantastic 'stringi' package. All function and argument names (and positions)
are consistent, all functions deal with "NA"'s and zero length vectors
in the same way, and the output from one function is easy to feed into
the input of another.
Author: Hadley Wickham [aut, cre, cph],
RStudio [cph]
Maintainer: Hadley Wickham
stringr-0.6.2/stringr/NEWS |only
stringr-0.6.2/stringr/R/checks.r |only
stringr-0.6.2/stringr/R/utils.r |only
stringr-0.6.2/stringr/R/vectorise.r |only
stringr-0.6.2/stringr/inst/tests |only
stringr-0.6.2/stringr/man/fixed.Rd |only
stringr-0.6.2/stringr/man/ignore.case.Rd |only
stringr-0.6.2/stringr/man/perl.Rd |only
stringr-0.6.2/stringr/man/str_extract_all.Rd |only
stringr-0.6.2/stringr/man/str_locate_all.Rd |only
stringr-0.6.2/stringr/man/str_match_all.Rd |only
stringr-0.6.2/stringr/man/str_replace_all.Rd |only
stringr-0.6.2/stringr/man/str_split_fixed.Rd |only
stringr-0.6.2/stringr/man/str_sub_replace.Rd |only
stringr-0.6.2/stringr/tests/test-all.R |only
stringr-1.0.0/stringr/DESCRIPTION | 39 ++--
stringr-1.0.0/stringr/MD5 | 128 ++++++++--------
stringr-1.0.0/stringr/NAMESPACE | 16 ++
stringr-1.0.0/stringr/R/c.r | 45 +++--
stringr-1.0.0/stringr/R/case.R |only
stringr-1.0.0/stringr/R/conv.R |only
stringr-1.0.0/stringr/R/count.r | 42 ++---
stringr-1.0.0/stringr/R/detect.r | 50 +++---
stringr-1.0.0/stringr/R/dup.r | 22 --
stringr-1.0.0/stringr/R/extract.r | 73 ++++-----
stringr-1.0.0/stringr/R/length.r | 35 +++-
stringr-1.0.0/stringr/R/locate.r | 116 +++++---------
stringr-1.0.0/stringr/R/match.r | 88 ++++-------
stringr-1.0.0/stringr/R/modifiers.r | 184 ++++++++++++++++-------
stringr-1.0.0/stringr/R/pad-trim.r | 69 +++-----
stringr-1.0.0/stringr/R/replace.r | 103 ++++++++----
stringr-1.0.0/stringr/R/sort.R |only
stringr-1.0.0/stringr/R/split.r | 128 +++++-----------
stringr-1.0.0/stringr/R/stringr.R |only
stringr-1.0.0/stringr/R/sub.r | 95 ++++-------
stringr-1.0.0/stringr/R/subset.R |only
stringr-1.0.0/stringr/R/utils.R |only
stringr-1.0.0/stringr/R/word.r | 6
stringr-1.0.0/stringr/R/wrap.r | 18 +-
stringr-1.0.0/stringr/README.md | 49 ++++--
stringr-1.0.0/stringr/build |only
stringr-1.0.0/stringr/inst/doc |only
stringr-1.0.0/stringr/man/case.Rd |only
stringr-1.0.0/stringr/man/invert_match.Rd | 13 -
stringr-1.0.0/stringr/man/modifier-deprecated.Rd |only
stringr-1.0.0/stringr/man/modifiers.Rd |only
stringr-1.0.0/stringr/man/pipe.Rd |only
stringr-1.0.0/stringr/man/str_c.Rd | 48 +++---
stringr-1.0.0/stringr/man/str_conv.Rd |only
stringr-1.0.0/stringr/man/str_count.Rd | 43 +++--
stringr-1.0.0/stringr/man/str_detect.Rd | 35 ++--
stringr-1.0.0/stringr/man/str_dup.Rd | 13 -
stringr-1.0.0/stringr/man/str_extract.Rd | 57 +++++--
stringr-1.0.0/stringr/man/str_length.Rd | 38 +++-
stringr-1.0.0/stringr/man/str_locate.Rd | 61 +++++--
stringr-1.0.0/stringr/man/str_match.Rd | 39 +++-
stringr-1.0.0/stringr/man/str_order.Rd |only
stringr-1.0.0/stringr/man/str_pad.Rd | 27 ++-
stringr-1.0.0/stringr/man/str_replace.Rd | 59 ++++---
stringr-1.0.0/stringr/man/str_replace_na.Rd |only
stringr-1.0.0/stringr/man/str_split.Rd | 52 ++++--
stringr-1.0.0/stringr/man/str_sub.Rd | 64 +++++---
stringr-1.0.0/stringr/man/str_subset.Rd |only
stringr-1.0.0/stringr/man/str_trim.Rd | 17 +-
stringr-1.0.0/stringr/man/str_wrap.Rd | 27 +--
stringr-1.0.0/stringr/man/stringr.Rd |only
stringr-1.0.0/stringr/man/word.Rd | 25 +--
stringr-1.0.0/stringr/tests/testthat |only
stringr-1.0.0/stringr/tests/testthat.R |only
stringr-1.0.0/stringr/vignettes |only
70 files changed, 1067 insertions(+), 857 deletions(-)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Diff between sets versions 1.0-13 dated 2013-03-19 and 1.0-14 dated 2015-04-30
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and
fuzzy multisets, customizable sets, and intervals.
Author: David Meyer [aut, cre],
Kurt Hornik [aut],
Christian Buchta [ctb]
Maintainer: David Meyer
DESCRIPTION | 26 +++++++++++++-------------
MD5 | 25 ++++++++++++++-----------
R/cset.R | 6 ++++--
R/fuzzyinference.R | 7 +++++--
R/gset.R | 6 ++++--
R/interval.R | 6 ++++--
R/labels.R | 2 +-
R/set.R | 9 ++++++---
R/utilities.R | 13 +++++++++----
build |only
data/fuzzy_docs.rda |binary
inst/NEWS.Rd | 6 ++++++
inst/doc/sets.R |only
inst/doc/sets.bib |only
inst/doc/sets.pdf |binary
15 files changed, 66 insertions(+), 40 deletions(-)
Title: Data Structures and Algorithms for Relations
Diff between relations versions 0.6-4 dated 2015-02-02 and 0.6-5 dated 2015-04-30
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre],
Christian Buchta [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 12 ++++++------
MD5 | 20 ++++++++++----------
R/plot.R | 15 +++++++++++----
build/vignette.rds |binary
data/Cetacea.rda |binary
data/Felines.rda |binary
data/SVM_Benchmarking_Classification.rda |binary
data/SVM_Benchmarking_Classification_Consensus.rda |binary
data/SVM_Benchmarking_Regression.rda |binary
data/SVM_Benchmarking_Regression_Consensus.rda |binary
inst/doc/relations.pdf |binary
11 files changed, 27 insertions(+), 20 deletions(-)
Title: Harrell Miscellaneous
Diff between Hmisc versions 3.15-0 dated 2015-02-16 and 3.16-0 dated 2015-04-30
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 12 +-
INDEX | 3
MD5 | 72 ++++++++--------
NAMESPACE | 3
NEWS | 22 +++++
R/Misc.s | 206 +++++++++++++++++++++++++++++++++++++++++++++++-
R/describe.s | 10 +-
R/ggMisc.s |only
R/hoeffd.s | 30 +++---
R/impute.s | 2
R/label.s | 22 ++---
R/latex.s | 56 +++++++------
R/nobsY.s | 12 ++
R/panel.bpplot.s | 2
R/rcorr.s | 17 +--
R/rcspline.restate.s | 50 +++++++----
R/sas.get.s | 2
R/scat1d.s | 2
R/sedit.s | 9 --
R/summary.formula.s | 8 -
R/summaryM.s | 26 ++++--
R/summaryP.s | 143 +++++++++++++++++++++++++--------
R/summaryS.s | 2
R/wtd.stats.s | 19 +++-
README.md | 2
man/addMarginal.Rd | 5 -
man/getHdata.Rd | 2
man/getRs.Rd |only
man/ggMisc.Rd |only
man/html.Rd | 32 ++++++-
man/knitrSet.Rd |only
man/label.Rd | 8 +
man/rcspline.restate.Rd | 2
man/summaryP.Rd | 59 ++++++++++---
man/wtd.stats.Rd | 20 +++-
src/hoeffd.f | 12 +-
src/ratfor/hoeffd.r | 6 -
src/ratfor/rcorr.r | 26 +++---
src/rcorr.f | 28 +++---
39 files changed, 676 insertions(+), 256 deletions(-)
Title: Generic SQL Helper Functions for 'TSdbi' SQL Plugins
Diff between TSsql versions 2014.4-1 dated 2014-04-08 and 2015.1-2 dated 2015-04-30
Description: Standard SQL query functions used by
SQL plugins packages for the 'TSdbi' interface to time series databases.
It will mainly be used by other packages rather than directly by end
users. The one exception is the function 'TSquery' which can be used to
construct a time series from a database containing observations over
time (e.g. balance statements for multiple years), but where the database
is not specifically designed to store time series (as with other
'TSdbi' SQL plugin packages).
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 34 ++++++++---------
MD5 | 18 ++++-----
NAMESPACE | 15 ++-----
NEWS | 25 ++++++++++++
R/TSquery.R | 5 +-
R/TSsql.R | 88 ++++++++++++++++++++------------------------
inst/TSsql/Populate.TSsql | 4 +-
inst/TSsql/TSdbi.TSsql | 4 +-
inst/TSsql/dbGetQuery.TSsql | 18 ++++-----
man/createTSdbTables.Rd | 27 ++++++-------
10 files changed, 122 insertions(+), 116 deletions(-)
Title: Sparse Group Partial Least Square Methods
Diff between sgPLS versions 1.1 dated 2015-03-14 and 1.2 dated 2015-04-30
Description: The Sparse Group Partial Least Square package (sgPLS) provides sparse, group, and sparse group versions of partial least square regression models.
Author: Benoit Liquet and Pierre Lafaye de Micheaux
Maintainer: Benoit Liquet
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/perf.R | 24 ++++++++++++------------
3 files changed, 18 insertions(+), 18 deletions(-)
Title: Data Analysis in Ecology
Diff between pgirmess versions 1.5.9 dated 2014-06-09 and 1.6.0 dated 2015-04-30
Description: Miscellaneous functions for data analysis in ecology, with special emphasis on spatial data.
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux
DESCRIPTION | 12 +++++-----
MD5 | 34 +++++++++++++++--------------
NAMESPACE | 2 -
R/clipQGIS2df.R |only
R/cormat.R | 15 -------------
R/correlog.R | 9 ++++---
R/difshannonbio.R | 6 -----
R/expandpoly.r | 1
R/mergeTrackObs.r | 30 ++++++++++++++------------
R/piankabio.R | 8 ++-----
R/piankabioboot.R | 3 --
R/rwhatbufCat.r | 4 +--
R/shannonbio.R | 5 ----
R/shannonbioboot.R | 5 ----
data/preybiom.rda |binary
data/siegelp179.rda |binary
man/clipQGIS2df.Rd |only
man/correlog.Rd | 2 -
man/mergeTrackObs.rd | 58 +++++++++++++++++++++++++++++++++++----------------
19 files changed, 93 insertions(+), 101 deletions(-)
Title: Bayesian Spectral Inference
Diff between bspec versions 1.4 dated 2013-02-21 and 1.5 dated 2015-04-30
Description: Bayesian inference on the (discrete) power spectrum of time series.
Author: Christian Roever
Maintainer: Christian Roever
DESCRIPTION | 15 +++++++--------
MD5 | 35 ++++++++++++++++++-----------------
inst/CITATION | 15 ++++++++-------
man/acf.Rd | 6 +++---
man/bspec-package.Rd |only
man/bspec.Rd | 19 +++++++++++++++----
man/empiricalspectrum.Rd | 6 +++---
man/expectation.Rd | 6 +++---
man/likelihood.Rd | 6 +++---
man/matchedfilter.Rd | 10 +++++-----
man/onesided.Rd | 2 +-
man/ppsample.Rd | 2 +-
man/quantile.Rd | 2 +-
man/sample.Rd | 2 +-
man/snr.Rd | 6 +++---
man/temper.Rd | 6 +++---
man/temperature.Rd | 6 +++---
man/welchPSD.Rd | 10 +++++-----
man/windowing.Rd | 10 +++++-----
19 files changed, 88 insertions(+), 76 deletions(-)