Fri, 01 May 2015

New package WaterML with initial version 0.9.6
Package: WaterML
Title: Fetch and Analyze Data from WaterML or CUAHSI WaterOneFlow Web Service
Version: 0.9.6
Authors@R: person("Jiri","Kadlec", email="jirikadlec2@gmail.com", role=c("aut", "cre"))
Description: Lets you connect to any CUAHSI WaterOneFlow web service from any hydroserver. To see list of available hydroservers, see http://hiscentral.cuahsi.org. The package has five data download functions: GetServices(): show all public HydroServers from the HIS Central Catalog. GetVariables(): Show a data.frame with all variables on the server. GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables, methods and quality control levels are available at the specific site. GetValues(): Given a site code, variable code, start time and endtime, fetch a data.frame of all the observation time series data values. The data.frame has two columns: time and DataValue. This function has an optional "daily" parameter, you can set daily="max", daily="min" or daily="mean" to get aggregated daily values. The package also has five data upload functions: AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues(). These functions can be used for uploading data to a HydroServer Lite ODM database via the JSON data upload web service interface.
Depends: R (>= 3.0.1)
Imports: XML, RJSONIO, httr
License: MIT + file LICENSE
LazyData: true
NeedsCompilation: no
Packaged: 2015-05-01 19:39:47 UTC; Jiri
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec
Repository: CRAN
Date/Publication: 2015-05-01 23:35:20

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Package tsfa updated to version 2014.10-1 with previous version 2014.2-2 dated 2014-02-24

Title: Time Series Factor Analysis
Description: Extraction of Factors from Multivariate Time Series. See ?00tsfa-Intro for more details.
Author: Paul Gilbert and Erik Meijer
Maintainer: Paul Gilbert

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Package StreamMetabolism updated to version 1.1 with previous version 1.0 dated 2013-11-13

Title: Calculate Single Station Metabolism from Diurnal Oxygen Curves
Description: I provide functions to calculate Gross Primary Productivity, Net Ecocsystem Production, and Ecosystem Respiration from single station diurnal Oxygen curves.
Author: Stephen A Sefick Jr.
Maintainer: Stephen A Sefick Jr.

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Package CDNmoney updated to version 2012.4-2 with previous version 2012.4-1 dated 2012-05-03

Title: Components of Canadian Monetary and Credit Aggregates
Description: Components of Canadian Credit Aggregates and Monetary Aggregates with continuity adjustments.
Author: Paul Gilbert
Maintainer: Paul Gilbert

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Package gistr updated to version 0.2.0 with previous version 0.1.0 dated 2015-01-04

Title: Work with GitHub Gists
Description: Work with GitHub gists from R (e.g., http://en.wikipedia.org/wiki/GitHub#Gist, https://help.github.com/articles/about-gists/). A gist is simply one or more files with code/text/images/etc. This package allows the user to create new gists, update gists with new files, rename files, delete files, get and delete gists, star and un-star gists, fork gists, open a gist in your default browser, get embed code for a gist, list gist commits, and get rate limit information when authenticated. Some requests require authentication and some do not. Gists website: https://gist.github.com/.
Author: Ramnath Vaidyanathan [aut], Karthik Ram [aut], Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain

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Package capm updated to version 0.8.0 with previous version 0.7.0 dated 2015-03-04

Title: Companion Animal Population Management
Description: Quantitative analysis to support companion animal population management.
Author: Oswaldo Santos Baquero [aut, cre], Marcos Amaku [ctb], Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero

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Package RcppArmadillo updated to version 0.5.100.1.0 with previous version 0.5.000.0 dated 2015-04-21

Title: Rcpp Integration for the Armadillo Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

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Package TShistQuote (with last version 2013.9-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-02 2011.11-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2010-12-22 2010.12-1
2010-05-31 2010.5-1
2009-12-28 2009.12-1
2009-07-27 2009.7-1
2009-02-24 2009.1-1
2008-11-03 2008.11-1

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Package TSxls (with last version 2013.8-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-29 2013.8-2
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-02 2011.11-1
2011-08-05 2011.7-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2011-01-03 2010.12-1

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Package TSgetSymbol (with last version 2013.9-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-28 2011.11-2
2011-11-03 2011.11-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2010-12-22 2010.12-1

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Package TSzip (with last version 2013.9-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-28 2011.11-2
2011-11-02 2011.11-1
2011-08-05 2011.7-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1

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Package Rcpp updated to version 0.11.6 with previous version 0.11.5 dated 2015-03-06

Title: Seamless R and C++ Integration
Description: The Rcpp package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about Rcpp is provided by several vignettes included in this package, via the Rcpp Gallery site at http://gallery.rcpp.org, the paper by Eddelbuettel and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Douglas Bates, and John Chambers
Maintainer: Dirk Eddelbuettel

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New package qte with initial version 1.0.1
Package: qte
Type: Package
Title: Quantile Treatment Effects
Version: 1.0.1
Date: 2015-04-23
Author: Brantly Callaway
Maintainer: Brantly Callaway
Description: Provides several methods for computing the Quantile Treatment Effect (QTE) and Quantile Treatment Effect on the Treated (QTET). The main cases covered are (i) Treatment is randomly assigned, (ii) Treatment is as good as randomly assigned after conditioning on some covariates (also called conditional independence or selection on observables), (iii) Identification is based on a Difference in Differences assumption (several varieties are available in the package).
Depends: R (>= 2.10)
License: GPL-2
LazyData: true
Packaged: 2015-05-01 11:40:36 UTC; brant
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-01 16:09:20

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Package PopGenome updated to version 2.1.5 with previous version 2.1.0 dated 2014-11-03

Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Description: Provides efficient tools for population genomics data analysis, able to process individual loci, large sets of loci, or whole genomes. PopGenome not only implements a wide range of population genetics statistics, but also facilitates the easy implementation of new algorithms by other researchers. PopGenome is optimized for speed via the seamless integration of C code.
Author: Bastian Pfeifer [aut, cre], Ulrich Wittelsbuerger [ctb], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Bastian Pfeifer

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Package patchSynctex updated to version 0.1-2 with previous version 0.1-1 dated 2015-05-01

Title: Communication Between Editor and Viewer for Literate Programs
Description: This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.
Author: Jan Gleixner [aut], Daniel Hicks [ctb], Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier

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Package hsdar updated to version 0.1.3 with previous version 0.1.2 dated 2015-04-08

Title: Manage, Analyse and Simulate Hyperspectral Data in R
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert

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Package greport updated to version 0.5-3 with previous version 0.5-2 dated 2014-11-21

Title: Graphical Reporting for Clinical Trials
Description: Contains many functions useful for monitoring and reporting the results of clinical trials and other experiments in which treatments are compared. LaTeX is used to typeset the resulting reports, recommended to be in the context of 'knitr'. The 'Hmisc', 'ggplot2', and 'lattice' packages are used by 'greport' for high-level graphics.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr

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Package gdata updated to version 2.16.1 with previous version 2.13.3 dated 2014-04-06

Title: Various R Programming Tools for Data Manipulation
Description: Various R programming tools for data manipulation, including: - medical unit conversions ('ConvertMedUnits', 'MedUnits'), - combining objects ('bindData', 'cbindX', 'combine', 'interleave'), - character vector operations ('centerText', 'startsWith', 'trim'), - factor manipulation ('levels', 'reorder.factor', 'mapLevels'), - obtaining information about R objects ('object.size', 'elem', 'env', 'humanReadable', 'is.what', 'll', 'keep', 'ls.funs', 'Args','nPairs', 'nobs'), - manipulating MS-Excel formatted files ('read.xls', 'installXLSXsupport', 'sheetCount', 'xlsFormats'), - generating fixed-width format files ('write.fwf'), - extricating components of date & time objects ('getYear', 'getMonth', 'getDay', 'getHour', 'getMin', 'getSec'), - operations on columns of data frames ('matchcols', 'rename.vars'), - matrix operations ('unmatrix', 'upperTriangle', 'lowerTriangle'), - operations on vectors ('case', 'unknownToNA', 'duplicated2', 'trimSum'), - operations on data frames ('frameApply', 'wideByFactor'), - value of last evaluated expression ('ans'), and - wrapper for 'sample' that ensures consistent behavior for both scalar and vector arguments ('resample').
Author: Gregory R. Warnes, Ben Bolker, Gregor Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory R. Warnes

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Package uniftest updated to version 1.1 with previous version 1.0 dated 2014-12-24

Title: Tests for Uniformity
Description: Goodness-of-fit tests for the uniform distribution.
Author: Maxim Melnik, Ruslan Pusev
Maintainer: Ruslan Pusev

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Package TSdata updated to version 2015.4-1 with previous version 2013.9-1 dated 2013-09-29

Title: 'TSdbi' Illustration
Description: Illustrates the various 'TSdbi' packages with a vignette using time series data from several sources. The vignette also illustrates some simple time series manipulation and plotting using packages 'tframe' and 'tfplot'.
Author: Paul Gilbert
Maintainer: Paul Gilbert

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Package rsdmx updated to version 0.4-6 with previous version 0.4-5 dated 2015-02-14

Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents exchanged through the Statistical Data and Metadata Exchange (SDMX) framework, currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel

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Package RNeXML updated to version 2.0.2 with previous version 2.0.1 dated 2014-12-26

Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in NeXML format. The package should add new functionality to R such as the possibility to manipulate NeXML objects in more various and refined way and compatibility with 'ape' objects.
Author: Carl Boettiger [cre, aut], Scott Chamberlain [aut], Hilmar Lapp [aut], Kseniia Shumelchyk [aut], Rutger Vos [aut]
Maintainer: Carl Boettiger

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Package rgl updated to version 0.95.1247 with previous version 0.95.1201 dated 2014-12-21

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler , Duncan Murdoch , and others (see README)
Maintainer: Duncan Murdoch

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Permanent link

Package qicharts updated to version 0.1.3 with previous version 0.1.1 dated 2014-11-11

Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control charts for measure and count data. The main function, qic(), creates run and control charts and has a simple interface with a rich set of options to control data analysis and plotting, including options for automatic data aggregation by subgroups, easy analysis of before-and-after data, exclusion of one or more data points from analysis, and splitting charts into sequential time periods. Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre], Timo Roeder [ctb]
Maintainer: Jacob Anhoej

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Package patchSynctex updated to version 0.1-1 with previous version 0.1-0 dated 2015-01-11

Title: Communication Between Editor and Viewer for Literate Programs
Description: This utility eases the debugging of literate documents ('noweb' files) by patching the synchronization information (the '.synctex(.gz)' file) produced by 'pdflatex' with concordance information produced by 'Sweave' or 'knitr' and 'Sweave' or 'knitr' ; this allows for bilateral communication between a text editor (visualizing the 'noweb' source) and a viewer (visualizing the resultant 'PDF'), thus bypassing the intermediate 'TeX' file.
Author: Jan Gleixner [aut], Daniel Hicks [ctb], Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier

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Package multiplex updated to version 1.5 with previous version 1.2 dated 2014-02-06

Title: Analysis of Multiple Social Networks with Algebra
Description: Algebraic procedures for the analysis of multiple social networks are delivered with this package. Among other things, it is possible to create and manipulate multivariate network data with different formats, and there are effective ways available to treat multiple networks with routines that combine algebraic systems like the partially ordered semigroup or the semiring structure together with the relational bundles occurring in different types of multivariate network data sets. As well an algebraic approach for two-mode networks is made through Galois derivations between families of the pair of subsets.
Author: J. Antonio Rivero Ostoic
Maintainer: Antonio Rivero Ostoic

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Package mpoly updated to version 0.1.0 with previous version 0.0.5 dated 2014-04-29

Title: Symbolic Computation and More with Multivariate Polynomials
Description: Data structures, operations, and functions for the symbolic manipulation of multivariate polynomials.
Author: David Kahle [aut, cre]
Maintainer: David Kahle

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More information about mpoly at CRAN
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Package emdbook updated to version 1.3.8 with previous version 1.3.7 dated 2015-01-12

Title: Support Functions and Data for "Ecological Models and Data"
Description: Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).
Author: Ben Bolker
Maintainer: Ben Bolker

Diff between emdbook versions 1.3.7 dated 2015-01-12 and 1.3.8 dated 2015-05-01

 DESCRIPTION         |   12 ++++++------
 MD5                 |    7 ++++---
 inst/NEWS.Rd        |    7 +++++++
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 5 files changed, 22 insertions(+), 14 deletions(-)

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Package elastic updated to version 0.4.0 with previous version 0.3.0 dated 2015-01-29

Title: General Purpose Interface to Elasticsearch
Description: Connect to Elasticsearch, a NoSQL database built on the Java Virtual Machine. Interacts with the Elasticsearch HTTP API (http://elasticsearch.org), including functions for setting connection details to Elasticsearch instances, loading bulk data, searching for documents with both HTTP query variables and JSON based body requests. In addition, elastic provides functions for interacting with APIs for indices, documents, nodes, clusters, an interface to the cat API, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain

Diff between elastic versions 0.3.0 dated 2015-01-29 and 0.4.0 dated 2015-05-01

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 elastic-0.4.0/elastic/R/alias.R                        |   52 ++--
 elastic-0.4.0/elastic/R/cat.r                          |  168 +++++++++++++---
 elastic-0.4.0/elastic/R/connect.R                      |  137 +++++--------
 elastic-0.4.0/elastic/R/count.r                        |    1 
 elastic-0.4.0/elastic/R/docs_bulk.r                    |  117 ++++++++++-
 elastic-0.4.0/elastic/R/docs_create.R                  |   18 -
 elastic-0.4.0/elastic/R/docs_delete.R                  |   15 -
 elastic-0.4.0/elastic/R/docs_get.r                     |   48 ++--
 elastic-0.4.0/elastic/R/docs_mget.r                    |   75 ++++---
 elastic-0.4.0/elastic/R/elastic-package.r              |   53 +++--
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 elastic-0.4.0/elastic/R/httr-verbs.R                   |   81 ++++---
 elastic-0.4.0/elastic/R/index.R                        |  126 +++++-------
 elastic-0.4.0/elastic/R/mapping.R                      |   33 +--
 elastic-0.4.0/elastic/R/mlt.R                          |   88 ++++----
 elastic-0.4.0/elastic/R/nodes.R                        |   65 ++++--
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 elastic-0.4.0/elastic/man/count.Rd                     |    2 
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 elastic-0.4.0/elastic/man/mlt.Rd                       |   72 +++---
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 elastic-0.4.0/elastic/vignettes/search.Rmd             |   36 +--
 97 files changed, 1595 insertions(+), 983 deletions(-)

More information about elastic at CRAN
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Package confreq updated to version 1.3-1 with previous version 1.3 dated 2014-11-06

Title: Configural Frequencies Analysis Using Log-Linear Modeling
Description: Offers several functions for Configural Frequencies Analysis (CFA), which is a useful statistical tool for the analysis of multiway contingency tables. CFA was introduced by G. A. Lienert as 'Konfigurations Frequenz Analyse - KFA'.
Author: Joerg-Henrik Heine, R.W. Alexandrowicz (function stirling_cfa() ) and some package testing by Mark Stemmler
Maintainer: Joerg-Henrik Heine

Diff between confreq versions 1.3 dated 2014-11-06 and 1.3-1 dated 2015-05-01

 DESCRIPTION               |   16 +++++++-------
 MD5                       |   52 +++++++++++++++++++++++-----------------------
 NAMESPACE                 |    3 +-
 NEWS                      |   10 ++++++++
 R/CFA.R                   |   15 ++++++++-----
 R/binomial_test_cfa.R     |   38 ++++++++++++++++++++++++++-------
 R/confreq-package.R       |    3 --
 R/expected_cfa.R          |    2 -
 R/summary.CFA.R           |   40 +++++++++++++++++++++++++++--------
 R/summary.S2CFA.R         |    3 +-
 man/CFA.Rd                |    3 +-
 man/S2CFA.Rd              |    3 +-
 man/binomial_test_cfa.Rd  |    3 +-
 man/chi_local_test_cfa.Rd |    3 +-
 man/confreq-package.Rd    |    3 +-
 man/dat2fre.Rd            |    3 +-
 man/design_cfg_cfa.Rd     |    3 +-
 man/df_des_cfa.Rd         |    3 +-
 man/expected_cfa.Rd       |    3 +-
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 man/lr.Rd                 |    3 +-
 man/pos_cfg_cfa.Rd        |    3 +-
 man/stirling_cfa.Rd       |    3 +-
 man/summary.CFA.Rd        |   12 +++++++---
 man/summary.S2CFA.Rd      |    3 +-
 man/z_tests_cfa.Rd        |    3 +-
 27 files changed, 163 insertions(+), 79 deletions(-)

More information about confreq at CRAN
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