Title: Time Series Factor Analysis
Diff between tsfa versions 2014.2-2 dated 2014-02-24 and 2014.10-1 dated 2015-05-01
Description: Extraction of Factors from Multivariate Time Series. See ?00tsfa-Intro for more details.
Author: Paul Gilbert and Erik Meijer
Maintainer: Paul Gilbert
DESCRIPTION | 13 +++++--------
MD5 | 10 +++++-----
NEWS | 4 ++++
R/tsfa.R | 2 +-
build/vignette.rds |binary
inst/doc/Guide.pdf |binary
6 files changed, 15 insertions(+), 14 deletions(-)
Title: Calculate Single Station Metabolism from Diurnal Oxygen Curves
Diff between StreamMetabolism versions 1.0 dated 2013-11-13 and 1.1 dated 2015-05-01
More information about StreamMetabolism at CRAN
Description: I provide functions to calculate Gross Primary Productivity, Net Ecocsystem Production, and Ecosystem Respiration from single station diurnal Oxygen curves.
Author: Stephen A Sefick Jr.
Maintainer: Stephen A Sefick Jr.
StreamMetabolism-1.0/StreamMetabolism/R/EcosystemProduction.20.R |only
StreamMetabolism-1.0/StreamMetabolism/R/EcosystemProduction.K.R |only
StreamMetabolism-1.0/StreamMetabolism/R/EcosystemProduction.R |only
StreamMetabolism-1.0/StreamMetabolism/R/rear.flux.R |only
StreamMetabolism-1.0/StreamMetabolism/R/window.chron.R |only
StreamMetabolism-1.0/StreamMetabolism/man/EcosystemProduction.20.Rd |only
StreamMetabolism-1.0/StreamMetabolism/man/EcosystemProduction.K.Rd |only
StreamMetabolism-1.0/StreamMetabolism/man/EcosystemProduction.Rd |only
StreamMetabolism-1.0/StreamMetabolism/man/StreamMetabolism-package.Rd |only
StreamMetabolism-1.0/StreamMetabolism/man/rear.flux.Rd |only
StreamMetabolism-1.0/StreamMetabolism/man/window.chron.Rd |only
StreamMetabolism-1.1/StreamMetabolism/DESCRIPTION | 15 ++----
StreamMetabolism-1.1/StreamMetabolism/MD5 | 24 +++-------
StreamMetabolism-1.1/StreamMetabolism/R/SM.R |only
StreamMetabolism-1.1/StreamMetabolism/R/window_chron.R |only
StreamMetabolism-1.1/StreamMetabolism/README.md |only
StreamMetabolism-1.1/StreamMetabolism/man/Kt.Rd | 6 +-
StreamMetabolism-1.1/StreamMetabolism/man/ODobbins.Rd | 2
StreamMetabolism-1.1/StreamMetabolism/man/SM.Rd |only
StreamMetabolism-1.1/StreamMetabolism/man/sunrise.set.Rd | 12 ++++-
StreamMetabolism-1.1/StreamMetabolism/man/window_chron.Rd |only
21 files changed, 30 insertions(+), 29 deletions(-)
Permanent link
Title: Components of Canadian Monetary and Credit Aggregates
Diff between CDNmoney versions 2012.4-1 dated 2012-05-03 and 2012.4-2 dated 2015-05-01
Description: Components of Canadian Credit Aggregates and Monetary Aggregates with continuity adjustments.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 10 ++++----
MD5 | 33 ++++++++++++++---------------
NEWS | 4 +++
build |only
data/CanadianCreditData.asof.28Jan2005.rda |binary
data/CanadianCreditData.asof.3Mar2006.rda |binary
data/CanadianCreditData.asof.5Jun2007.rda |binary
data/CanadianCreditData.asof.6Mar2009.rda |binary
data/CanadianCreditData.rda |binary
data/CanadianMoneyData.asof.26Aug2002.rda |binary
data/CanadianMoneyData.asof.28Jan2005.rda |binary
data/CanadianMoneyData.asof.3Mar2006.rda |binary
data/CanadianMoneyData.asof.5Jun2007.rda |binary
data/CanadianMoneyData.asof.6Feb2004.rda |binary
data/CanadianMoneyData.asof.6Mar2009.rda |binary
data/CanadianMoneyData.rda |binary
inst/doc/CDNmoney.pdf |binary
man/CanadianMoneyData.Rd | 9 +++++--
18 files changed, 32 insertions(+), 24 deletions(-)
Title: Work with GitHub Gists
Diff between gistr versions 0.1.0 dated 2015-01-04 and 0.2.0 dated 2015-05-01
Description: Work with GitHub gists from R (e.g.,
http://en.wikipedia.org/wiki/GitHub#Gist,
https://help.github.com/articles/about-gists/). A gist is simply one or
more files with code/text/images/etc. This package allows the user to
create new gists, update gists with new files, rename files, delete files,
get and delete gists, star and un-star gists, fork gists, open a gist in
your default browser, get embed code for a gist, list gist commits, and
get rate limit information when authenticated. Some requests require
authentication and some do not. Gists website: https://gist.github.com/.
Author: Ramnath Vaidyanathan [aut],
Karthik Ram [aut],
Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain
gistr-0.1.0/gistr/inst/examples/alm_othersources.md |only
gistr-0.1.0/gistr/tests/testthat/test-gist_create.R |only
gistr-0.1.0/gistr/vignettes/img |only
gistr-0.2.0/gistr/DESCRIPTION | 14
gistr-0.2.0/gistr/MD5 | 105 ++++--
gistr-0.2.0/gistr/NAMESPACE | 32 +-
gistr-0.2.0/gistr/NEWS | 37 ++
gistr-0.2.0/gistr/R/commits.R | 7
gistr-0.2.0/gistr/R/forks.R | 9
gistr-0.2.0/gistr/R/gist.R | 26 +
gistr-0.2.0/gistr/R/gist_create.R | 179 +++++++++--
gistr-0.2.0/gistr/R/gist_create_obj.R |only
gistr-0.2.0/gistr/R/gist_map.R |only
gistr-0.2.0/gistr/R/gistr-package.R | 4
gistr-0.2.0/gistr/R/gists.R | 5
gistr-0.2.0/gistr/R/tabl.R |only
gistr-0.2.0/gistr/R/zzz.R | 67 +++-
gistr-0.2.0/gistr/README.md | 226 +++++++++-----
gistr-0.2.0/gistr/build/vignette.rds |binary
gistr-0.2.0/gistr/inst/doc/gistr_vignette.Rmd | 145 ++++-----
gistr-0.2.0/gistr/inst/doc/gistr_vignette.html | 244 +++++++---------
gistr-0.2.0/gistr/inst/examples/alm.md |only
gistr-0.2.0/gistr/inst/examples/artifacts_eg1.Rmd |only
gistr-0.2.0/gistr/inst/examples/ecoengine_eg.geojson |only
gistr-0.2.0/gistr/inst/examples/example1.R |only
gistr-0.2.0/gistr/inst/examples/example1.md |only
gistr-0.2.0/gistr/inst/examples/example2.R |only
gistr-0.2.0/gistr/inst/examples/file.png |only
gistr-0.2.0/gistr/inst/examples/plots.Rmd |only
gistr-0.2.0/gistr/inst/examples/plots.md |only
gistr-0.2.0/gistr/inst/examples/plots_imgur.Rmd |only
gistr-0.2.0/gistr/inst/examples/plots_imgur.Rnw |only
gistr-0.2.0/gistr/inst/examples/plots_imgur.md |only
gistr-0.2.0/gistr/inst/examples/rnw_example.Rnw |only
gistr-0.2.0/gistr/inst/examples/stuff.md | 34 +-
gistr-0.2.0/gistr/inst/ignore |only
gistr-0.2.0/gistr/inst/vign/gistr_vignette.Rmd | 10
gistr-0.2.0/gistr/inst/vign/gistr_vignette.md | 145 ++++-----
gistr-0.2.0/gistr/man/browse.Rd | 2
gistr-0.2.0/gistr/man/commits.Rd | 4
gistr-0.2.0/gistr/man/delete.Rd | 4
gistr-0.2.0/gistr/man/embed.Rd | 2
gistr-0.2.0/gistr/man/files.Rd | 4
gistr-0.2.0/gistr/man/fork.Rd | 2
gistr-0.2.0/gistr/man/forks.Rd | 3
gistr-0.2.0/gistr/man/gist.Rd | 20 +
gistr-0.2.0/gistr/man/gist_auth.Rd | 2
gistr-0.2.0/gistr/man/gist_create.Rd | 73 ++++
gistr-0.2.0/gistr/man/gist_create_obj.Rd |only
gistr-0.2.0/gistr/man/gist_map.Rd |only
gistr-0.2.0/gistr/man/gistr-package.Rd | 6
gistr-0.2.0/gistr/man/gists.Rd | 4
gistr-0.2.0/gistr/man/pipe.Rd | 2
gistr-0.2.0/gistr/man/rate_limit.Rd | 2
gistr-0.2.0/gistr/man/run.Rd | 2
gistr-0.2.0/gistr/man/star.Rd | 4
gistr-0.2.0/gistr/man/tabl.Rd |only
gistr-0.2.0/gistr/man/update.Rd | 4
gistr-0.2.0/gistr/tests/localtests |only
gistr-0.2.0/gistr/tests/testthat/figure |only
gistr-0.2.0/gistr/tests/testthat/test-commits.R | 2
gistr-0.2.0/gistr/tests/testthat/test-gist_create_obj.R |only
gistr-0.2.0/gistr/tests/testthat/test-rate_limit.R | 5
gistr-0.2.0/gistr/vignettes/gistr_vignette.Rmd | 145 ++++-----
64 files changed, 1008 insertions(+), 573 deletions(-)
Title: Companion Animal Population Management
Diff between capm versions 0.7.0 dated 2015-03-04 and 0.8.0 dated 2015-05-01
Description: Quantitative analysis to support companion animal population
management.
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero
DESCRIPTION | 10 ++--
MD5 | 68 +++++++++++++--------------
NAMESPACE | 2
NEWS | 27 +++++++++-
R/CalculatePopChange.R | 30 ++++++++----
R/PlotGlobalSens.R | 16 +++---
R/PlotLocalSens.R | 73 ++++++++++++++---------------
R/PlotModels.R | 86 +++++++++++++++++------------------
R/PlotPopPyramid.R | 12 ++--
R/SolveIASA.R | 2
R/SolveTC.R | 17 +++---
R/capm-package.R | 4 -
README.md | 7 --
inst/CITATION | 8 +--
man/Calculate2StageSampleSize.Rd | 2
man/CalculateGlobalSens.Rd | 2
man/CalculateLocalSens.Rd | 2
man/CalculatePopChange.Rd | 2
man/CalculateSimpleSampleSize.Rd | 2
man/CalculateStratifiedSampleSize.Rd | 2
man/DesignSurvey.Rd | 2
man/GraphicInterface.Rd | 2
man/MapkmlPSU.Rd | 2
man/PlotGlobalSens.Rd | 12 ++--
man/PlotLocalSens.Rd | 6 +-
man/PlotModels.Rd | 16 +++---
man/PlotPopPyramid.Rd | 12 ++--
man/SamplePPS.Rd | 2
man/SampleSystematic.Rd | 2
man/SetRanges.Rd | 2
man/SolveIASA.Rd | 2
man/SolveSI.Rd | 2
man/SolveTC.Rd | 6 +-
man/SummarySurvey.Rd | 2
man/capm-package.Rd | 6 +-
35 files changed, 240 insertions(+), 210 deletions(-)
Title: Rcpp Integration for the Armadillo Templated Linear Algebra
Library
Diff between RcppArmadillo versions 0.5.000.0 dated 2015-04-21 and 0.5.100.1.0 dated 2015-05-01
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 15 +
DESCRIPTION | 23 +-
MD5 | 39 ++--
inst/NEWS.Rd | 11 +
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/include/armadillo | 1
inst/include/armadillo_bits/Mat_bones.hpp | 3
inst/include/armadillo_bits/Mat_meat.hpp | 166 +++++++++++++++++++--
inst/include/armadillo_bits/arma_version.hpp | 6
inst/include/armadillo_bits/compiler_setup.hpp | 110 ++++++-------
inst/include/armadillo_bits/constants.hpp | 48 +++---
inst/include/armadillo_bits/constants_compat.hpp | 48 +++---
inst/include/armadillo_bits/fn_interp1.hpp |only
inst/include/armadillo_bits/glue_hist_meat.hpp | 34 +++-
inst/include/armadillo_bits/glue_histc_meat.hpp | 34 +++-
inst/include/armadillo_bits/mul_gemm.hpp | 6
inst/include/armadillo_bits/mul_gemv.hpp | 6
inst/include/armadillo_bits/op_sort_bones.hpp | 36 ++++
inst/include/armadillo_bits/op_sort_meat.hpp | 64 --------
inst/include/armadillo_bits/typedef_elem_check.hpp | 2
21 files changed, 428 insertions(+), 224 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-02 2011.11-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2010-12-22 2010.12-1
2010-05-31 2010.5-1
2009-12-28 2009.12-1
2009-07-27 2009.7-1
2009-02-24 2009.1-1
2008-11-03 2008.11-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-29 2013.8-2
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-02 2011.11-1
2011-08-05 2011.7-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2011-01-03 2010.12-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-28 2011.11-2
2011-11-03 2011.11-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
2010-12-22 2010.12-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-29 2013.9-1
2012-10-01 2012.8-1
2012-05-03 2012.4-1
2011-11-28 2011.11-2
2011-11-02 2011.11-1
2011-08-05 2011.7-1
2011-07-27 2011.6-1
2011-03-23 2011.3-1
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.11.5 dated 2015-03-06 and 0.11.6 dated 2015-05-01
Description: The Rcpp package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about Rcpp is provided by several vignettes included in this package, via the
Rcpp Gallery site at http://gallery.rcpp.org, the paper by Eddelbuettel and
Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey,
Douglas Bates, and John Chambers
Maintainer: Dirk Eddelbuettel
ChangeLog | 80 ++++++++
DESCRIPTION | 8
MD5 | 102 +++++-----
R/Attributes.R | 56 +++--
README.md | 11 -
build/Rcpp.pdf |binary
build/vignette.rds |binary
inst/NEWS.Rd | 21 ++
inst/doc/Rcpp-FAQ.R | 37 +--
inst/doc/Rcpp-FAQ.Rnw | 1
inst/doc/Rcpp-FAQ.pdf |binary
inst/doc/Rcpp-attributes.pdf |binary
inst/doc/Rcpp-extending.pdf |binary
inst/doc/Rcpp-introduction.pdf |binary
inst/doc/Rcpp-modules.pdf |binary
inst/doc/Rcpp-package.pdf |binary
inst/doc/Rcpp-quickref.pdf |binary
inst/doc/Rcpp-sugar.pdf |binary
inst/doc/Rcpp-unitTests.pdf |binary
inst/include/Rcpp.h | 4
inst/include/Rcpp/Date.h | 98 +++++-----
inst/include/Rcpp/DateVector.h | 8
inst/include/Rcpp/Datetime.h | 110 +++++------
inst/include/Rcpp/DatetimeVector.h | 10 -
inst/include/Rcpp/InternalFunction.h | 16 -
inst/include/Rcpp/InternalFunctionWithStdFunction.h | 139 +++++++-------
inst/include/Rcpp/api/meat/Date.h | 7
inst/include/Rcpp/api/meat/Datetime.h | 27 +-
inst/include/Rcpp/api/meat/is.h | 169 ++++++++---------
inst/include/Rcpp/as.h | 122 ++++++------
inst/include/Rcpp/config.h | 6
inst/include/Rcpp/macros/macros.h | 38 ++-
inst/include/Rcpp/macros/xp.h | 6
inst/include/Rcpp/r/headers.h | 4
inst/include/Rcpp/utils/tinyformat.h | 6
inst/include/Rcpp/vector/00_forward_proxy.h | 4
inst/include/Rcpp/vector/Matrix.h | 4
inst/include/Rcpp/vector/Vector.h | 2
inst/include/Rcpp/vector/const_string_proxy.h | 1
inst/include/Rcpp/vector/string_proxy.h | 1
inst/include/Rcpp/vector/traits.h | 31 ++-
inst/include/RcppCommon.h | 57 ++---
inst/unitTests/cpp/Vector.cpp | 12 +
inst/unitTests/runit.Vector.R | 12 +
src/Makevars.win | 4
src/Module.cpp | 194 ++++++++++----------
src/Rcpp_init.cpp | 35 +--
src/api.cpp | 178 ++++++++----------
src/attributes.cpp | 133 +++++++------
src/barrier.cpp | 160 ++++++++--------
src/internal.h | 124 ++++++------
vignettes/Rcpp-FAQ.Rnw | 1
52 files changed, 1107 insertions(+), 932 deletions(-)
Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Diff between PopGenome versions 2.1.0 dated 2014-11-03 and 2.1.5 dated 2015-05-01
Description: Provides efficient tools for population genomics data analysis,
able to process individual loci, large sets of loci, or whole genomes. PopGenome not only
implements a wide range of population genetics statistics, but also facilitates the easy
implementation of new algorithms by other researchers. PopGenome is optimized for speed via
the seamless integration of C code.
Author: Bastian Pfeifer [aut, cre], Ulrich Wittelsbuerger [ctb], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Bastian Pfeifer
PopGenome-2.1.0/PopGenome/src/zlib |only
PopGenome-2.1.5/PopGenome/DESCRIPTION | 28 +
PopGenome-2.1.5/PopGenome/MD5 | 145 ++++------
PopGenome-2.1.5/PopGenome/NAMESPACE | 6
PopGenome-2.1.5/PopGenome/NEWS | 28 +
PopGenome-2.1.5/PopGenome/R/GEN.R | 9
PopGenome-2.1.5/PopGenome/R/GENOME.R | 8
PopGenome-2.1.5/PopGenome/R/GFF_split_into_scaffolds.R |only
PopGenome-2.1.5/PopGenome/R/MS.R | 8
PopGenome-2.1.5/PopGenome/R/PsPn.R | 4
PopGenome-2.1.5/PopGenome/R/VCF_split_into_scaffolds.R |only
PopGenome-2.1.5/PopGenome/R/Whop_readVCF.R | 10
PopGenome-2.1.5/PopGenome/R/calcR2.R | 2
PopGenome-2.1.5/PopGenome/R/calc_diversities.R | 2
PopGenome-2.1.5/PopGenome/R/calc_freqstats.R | 2
PopGenome-2.1.5/PopGenome/R/calc_freqstats_FAST.R | 2
PopGenome-2.1.5/PopGenome/R/calc_hwhafsth.R | 8
PopGenome-2.1.5/PopGenome/R/calc_miss.R |only
PopGenome-2.1.5/PopGenome/R/calc_phi_st.R | 2
PopGenome-2.1.5/PopGenome/R/coalsim.R | 4
PopGenome-2.1.5/PopGenome/R/concatenate.R | 12
PopGenome-2.1.5/PopGenome/R/count.unknowns.R |only
PopGenome-2.1.5/PopGenome/R/fisherextest.R | 8
PopGenome-2.1.5/PopGenome/R/fstcalc.R | 2
PopGenome-2.1.5/PopGenome/R/get.feature.names.R |only
PopGenome-2.1.5/PopGenome/R/get_data.R | 2
PopGenome-2.1.5/PopGenome/R/getsynnonsyndiff.R | 26 -
PopGenome-2.1.5/PopGenome/R/parse_gff.R | 2
PopGenome-2.1.5/PopGenome/R/popgen.R | 4
PopGenome-2.1.5/PopGenome/R/probabilities.R | 2
PopGenome-2.1.5/PopGenome/R/read.big.fasta.R | 2
PopGenome-2.1.5/PopGenome/R/readData.R | 6
PopGenome-2.1.5/PopGenome/R/readHapMap.R | 6
PopGenome-2.1.5/PopGenome/R/readSNP.R | 2
PopGenome-2.1.5/PopGenome/R/readVCF.R | 17 -
PopGenome-2.1.5/PopGenome/R/region.as.fasta.R | 35 ++
PopGenome-2.1.5/PopGenome/R/set.synnonsyn.R | 12
PopGenome-2.1.5/PopGenome/R/sliding.window.transform.new.R | 2
PopGenome-2.1.5/PopGenome/R/slim.R | 4
PopGenome-2.1.5/PopGenome/R/split.GFF.R | 24 +
PopGenome-2.1.5/PopGenome/R/split_data_into_GFF_attributes.R |only
PopGenome-2.1.5/PopGenome/R/splitting.data.R | 18 -
PopGenome-2.1.5/PopGenome/R/update_slim.R | 2
PopGenome-2.1.5/PopGenome/build/vignette.rds |binary
PopGenome-2.1.5/PopGenome/inst/COPYRIGHTS |only
PopGenome-2.1.5/PopGenome/inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary
PopGenome-2.1.5/PopGenome/inst/doc/Integration_of_new_Methods.Rnw | 8
PopGenome-2.1.5/PopGenome/inst/doc/Integration_of_new_Methods.pdf |binary
PopGenome-2.1.5/PopGenome/inst/doc/Whole_genome_analyses_using_VCF_files.Rnw |only
PopGenome-2.1.5/PopGenome/inst/doc/Whole_genome_analyses_using_VCF_files.pdf |only
PopGenome-2.1.5/PopGenome/man/F_ST.stats-methods.Rd | 3
PopGenome-2.1.5/PopGenome/man/GENOME-class.Rd | 5
PopGenome-2.1.5/PopGenome/man/GFF_split_into_scaffolds.Rd |only
PopGenome-2.1.5/PopGenome/man/VCF_split_into_scaffolds.Rd |only
PopGenome-2.1.5/PopGenome/man/count.unknowns-methods.Rd |only
PopGenome-2.1.5/PopGenome/man/get.feature.names.Rd |only
PopGenome-2.1.5/PopGenome/man/readData.Rd | 4
PopGenome-2.1.5/PopGenome/man/readVCF.Rd | 2
PopGenome-2.1.5/PopGenome/man/region.as.fasta.Rd | 14
PopGenome-2.1.5/PopGenome/man/set.synnonsyn-methods.Rd | 6
PopGenome-2.1.5/PopGenome/man/split_data_into_GFF_attributes.Rd |only
PopGenome-2.1.5/PopGenome/src/Makevars | 11
PopGenome-2.1.5/PopGenome/src/Makevars.win | 60 ++--
PopGenome-2.1.5/PopGenome/src/VCF_split.cpp |only
PopGenome-2.1.5/PopGenome/src/myReadVCFC.c | 24 +
PopGenome-2.1.5/PopGenome/vignettes/2Lslide.pdf |only
PopGenome-2.1.5/PopGenome/vignettes/GenesTaj.pdf |only
PopGenome-2.1.5/PopGenome/vignettes/Integration_of_new_Methods.Rnw | 8
PopGenome-2.1.5/PopGenome/vignettes/SFS.pdf |only
PopGenome-2.1.5/PopGenome/vignettes/Whole_genome_analyses_using_VCF_files.Rnw |only
PopGenome-2.1.5/PopGenome/vignettes/nucFST.pdf |only
PopGenome-2.1.5/PopGenome/vignettes/nucFSTvsAll.pdf |only
72 files changed, 374 insertions(+), 227 deletions(-)
Title: Communication Between Editor and Viewer for Literate Programs
Diff between patchSynctex versions 0.1-1 dated 2015-05-01 and 0.1-2 dated 2015-05-01
Description: This utility eases the debugging of literate documents
('noweb' files) by patching the synchronization information
(the '.synctex(.gz)' file) produced by 'pdflatex' with
concordance information produced by 'Sweave' or 'knitr' and
'Sweave' or 'knitr' ; this allows for bilateral communication
between a text editor (visualizing the 'noweb' source) and
a viewer (visualizing the resultant 'PDF'), thus bypassing
the intermediate 'TeX' file.
Author: Jan Gleixner [aut],
Daniel Hicks [ctb],
Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier
DESCRIPTION | 9 +++++----
MD5 | 5 +++--
NEWS | 4 +++-
README.md |only
4 files changed, 11 insertions(+), 7 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data in R
Diff between hsdar versions 0.1.2 dated 2015-04-08 and 0.1.3 dated 2015-05-01
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [ctb],
Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert
ChangeLog |only
DESCRIPTION | 10 +-
MD5 | 30 +++---
R/continuum_transform.R | 18 ++-
R/rededge.R | 37 +++-----
R/smgm.R |only
R/soilindex.R |only
R/vegindex.R | 157 +++++++++++++++++++++++++++-------
inst/doc/References.Rnw | 4
inst/doc/References.pdf |binary
man/hsdar-package.Rd | 2
man/rededge.Rd | 2
man/smgm.Rd |only
man/soilindex.Rd |only
man/vegindex.Rd | 56 ++++++++++--
src/smgm.f90 |only
vignettes/References.Rnw | 4
vignettes/References.tex | 4
vignettes/hsdar.bib | 214 +++++++++++++++++++++++++++++++++++++++++------
19 files changed, 426 insertions(+), 112 deletions(-)
Title: Graphical Reporting for Clinical Trials
Diff between greport versions 0.5-2 dated 2014-11-21 and 0.5-3 dated 2015-05-01
Description: Contains many functions useful for
monitoring and reporting the results of clinical trials and other
experiments in which treatments are compared. LaTeX is
used to typeset the resulting reports, recommended to be in the
context of 'knitr'. The 'Hmisc', 'ggplot2', and 'lattice' packages are used
by 'greport' for high-level graphics.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
greport-0.5-2/greport/tests/report.tex |only
greport-0.5-3/greport/DESCRIPTION | 19 +--
greport-0.5-3/greport/INDEX | 2
greport-0.5-3/greport/MD5 | 64 ++++++------
greport-0.5-3/greport/NAMESPACE | 6 -
greport-0.5-3/greport/NEWS | 22 ++++
greport-0.5-3/greport/R/Misc.r | 136 +++++++++++++++++++-------
greport-0.5-3/greport/R/accrualReport.r | 8 -
greport-0.5-3/greport/R/dReport.r | 79 ++++++++++++---
greport-0.5-3/greport/R/eReport.r | 4
greport-0.5-3/greport/R/exReport.r | 10 +
greport-0.5-3/greport/R/greport-package.r | 5
greport-0.5-3/greport/R/nriskReport.r | 6 -
greport-0.5-3/greport/R/survReport.r | 31 +++--
greport-0.5-3/greport/man/Merge.Rd | 3
greport-0.5-3/greport/man/accrualReport.Rd | 3
greport-0.5-3/greport/man/appsection.Rd |only
greport-0.5-3/greport/man/dNeedle.Rd | 3
greport-0.5-3/greport/man/dReport.Rd | 15 +-
greport-0.5-3/greport/man/eReport.Rd | 3
greport-0.5-3/greport/man/exReport.Rd | 3
greport-0.5-3/greport/man/getgreportOption.Rd | 3
greport-0.5-3/greport/man/greport.Rd | 3
greport-0.5-3/greport/man/latticeInit.Rd | 3
greport-0.5-3/greport/man/mfrowSuggest.Rd | 3
greport-0.5-3/greport/man/nriskReport.Rd | 3
greport-0.5-3/greport/man/putFig.Rd | 7 -
greport-0.5-3/greport/man/sampleFrac.Rd | 3
greport-0.5-3/greport/man/setgreportOption.Rd | 5
greport-0.5-3/greport/man/startPlot.Rd | 3
greport-0.5-3/greport/man/survReport.Rd | 10 +
greport-0.5-3/greport/man/upFirst.Rd | 11 +-
greport-0.5-3/greport/tests/report.Rnw | 18 ++-
greport-0.5-3/greport/tests/test.Rnw | 61 ++++++++---
34 files changed, 389 insertions(+), 166 deletions(-)
Title: Various R Programming Tools for Data Manipulation
Diff between gdata versions 2.13.3 dated 2014-04-06 and 2.16.1 dated 2015-05-01
Description: Various R programming tools for data manipulation, including:
- medical unit conversions ('ConvertMedUnits', 'MedUnits'),
- combining objects ('bindData', 'cbindX', 'combine', 'interleave'),
- character vector operations ('centerText', 'startsWith', 'trim'),
- factor manipulation ('levels', 'reorder.factor', 'mapLevels'),
- obtaining information about R objects ('object.size', 'elem', 'env',
'humanReadable', 'is.what', 'll', 'keep', 'ls.funs',
'Args','nPairs', 'nobs'),
- manipulating MS-Excel formatted files ('read.xls',
'installXLSXsupport', 'sheetCount', 'xlsFormats'),
- generating fixed-width format files ('write.fwf'),
- extricating components of date & time objects ('getYear', 'getMonth',
'getDay', 'getHour', 'getMin', 'getSec'),
- operations on columns of data frames ('matchcols', 'rename.vars'),
- matrix operations ('unmatrix', 'upperTriangle', 'lowerTriangle'),
- operations on vectors ('case', 'unknownToNA', 'duplicated2', 'trimSum'),
- operations on data frames ('frameApply', 'wideByFactor'),
- value of last evaluated expression ('ans'), and
- wrapper for 'sample' that ensures consistent behavior for both
scalar and vector arguments ('resample').
Author: Gregory R. Warnes, Ben Bolker, Gregor Gorjanc, Gabor
Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni
Magnusson, Jim Rogers, and others
Maintainer: Gregory R. Warnes
gdata-2.13.3/gdata/R/aggregate.table.R |only
gdata-2.13.3/gdata/inst/perl/Spreadsheet/XLSX |only
gdata-2.13.3/gdata/inst/perl/Spreadsheet/XLSX.pm |only
gdata-2.16.1/gdata/ChangeLog | 218 ++
gdata-2.16.1/gdata/DESCRIPTION | 35
gdata-2.16.1/gdata/MD5 | 121 -
gdata-2.16.1/gdata/NAMESPACE | 18
gdata-2.16.1/gdata/NEWS | 97
gdata-2.16.1/gdata/R/first.R |only
gdata-2.16.1/gdata/R/humanReadable.R |only
gdata-2.16.1/gdata/R/installXLSXsupport.R | 9
gdata-2.16.1/gdata/R/left.R |only
gdata-2.16.1/gdata/R/mapLevels.R | 6
gdata-2.16.1/gdata/R/object.size.R | 143 -
gdata-2.16.1/gdata/R/reorder.R | 26
gdata-2.16.1/gdata/R/trim.R | 4
gdata-2.16.1/gdata/R/write.fwf.R | 55
gdata-2.16.1/gdata/build/vignette.rds |binary
gdata-2.16.1/gdata/inst/ChangeLog | 218 ++
gdata-2.16.1/gdata/inst/NEWS | 97
gdata-2.16.1/gdata/inst/doc/mapLevels.pdf |binary
gdata-2.16.1/gdata/inst/doc/unknown.pdf |binary
gdata-2.16.1/gdata/inst/perl/Crypt |only
gdata-2.16.1/gdata/inst/perl/Digest |only
gdata-2.16.1/gdata/inst/perl/Graphics |only
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel.pm | 1039 +++++++---
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Cell.pm | 57
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Dump.pm | 13
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm | 44
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan.pm | 23
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm | 13
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm | 13
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Font.pm | 13
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Format.pm | 13
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser.pm | 15
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser/Workbook.pm | 54
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser/Worksheet.pm | 16
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Utility.pm | 85
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Workbook.pm | 38
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseExcel/Worksheet.pm | 114 -
gdata-2.16.1/gdata/inst/perl/Spreadsheet/ParseXLSX.pm |only
gdata-2.16.1/gdata/inst/perl/XML |only
gdata-2.16.1/gdata/inst/perl/install_modules.pl | 4
gdata-2.16.1/gdata/inst/perl/module_tools.pl | 30
gdata-2.16.1/gdata/inst/perl/sheetCount.pl | 13
gdata-2.16.1/gdata/inst/perl/sheetNames.pl | 13
gdata-2.16.1/gdata/inst/perl/supportedFormats.pl | 4
gdata-2.16.1/gdata/inst/perl/xls2csv.pl | 93
gdata-2.16.1/gdata/inst/perl/xls2tab.pl | 93
gdata-2.16.1/gdata/inst/perl/xls2tsv.pl | 93
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile.xls |binary
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile.xlsx |binary
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile_1900.xls |only
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile_1900.xlsx |only
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile_1904.xls |only
gdata-2.16.1/gdata/inst/xls/ExampleExcelFile_1904.xlsx |only
gdata-2.16.1/gdata/inst/xls/wide.xls |only
gdata-2.16.1/gdata/inst/xls/wide.xlsx |only
gdata-2.16.1/gdata/man/first.Rd |only
gdata-2.16.1/gdata/man/humanReadable.Rd | 104 -
gdata-2.16.1/gdata/man/left.Rd |only
gdata-2.16.1/gdata/man/object.size.Rd | 122 -
gdata-2.16.1/gdata/man/reorder.Rd | 67
gdata-2.16.1/gdata/man/write.fwf.Rd | 21
gdata-2.16.1/gdata/tests/test.humanReadable.R |only
gdata-2.16.1/gdata/tests/test.humanReadable.Rout.save |only
gdata-2.16.1/gdata/tests/test.read.xls.R | 146 +
gdata-2.16.1/gdata/tests/test.read.xls.Rout.save | 358 ++-
gdata-2.16.1/gdata/tests/test.reorder.factor.R |only
gdata-2.16.1/gdata/tests/test.reorder.factor.Rout.save |only
gdata-2.16.1/gdata/tests/tests.write.fwf.Rout.save | 8
gdata-2.16.1/gdata/tests/unitTests/runit.write.fwf.R | 57
72 files changed, 2986 insertions(+), 837 deletions(-)
Title: Tests for Uniformity
Diff between uniftest versions 1.0 dated 2014-12-24 and 1.1 dated 2015-05-01
Description: Goodness-of-fit tests for the uniform distribution.
Author: Maxim Melnik, Ruslan Pusev
Maintainer: Ruslan Pusev
uniftest-1.0/uniftest/R/sherman.unif.test.R |only
uniftest-1.1/uniftest/DESCRIPTION | 11 ++++++-----
uniftest-1.1/uniftest/MD5 | 20 ++++++++++++++++----
uniftest-1.1/uniftest/NAMESPACE | 3 +--
uniftest-1.1/uniftest/R/dudewicz.unif.test.r |only
uniftest-1.1/uniftest/R/hegazy.unif.test.r |only
uniftest-1.1/uniftest/R/kolmogorov.unif.test.r |only
uniftest-1.1/uniftest/R/kuiper.unif.test.r |only
uniftest-1.1/uniftest/R/neyman.unif.test.r |only
uniftest-1.1/uniftest/R/quesenberry.unif.test.r | 8 ++++----
uniftest-1.1/uniftest/R/sarkadi.unif.test.r |only
uniftest-1.1/uniftest/R/sherman.unif.test.r |only
uniftest-1.1/uniftest/man/dudewicz.unif.test.Rd |only
uniftest-1.1/uniftest/man/hegazy.unif.test.Rd |only
uniftest-1.1/uniftest/man/kolmogorov.unif.test.Rd |only
uniftest-1.1/uniftest/man/kuiper.unif.test.Rd |only
uniftest-1.1/uniftest/man/neyman.unif.test.Rd |only
uniftest-1.1/uniftest/man/sarkadi.unif.test.Rd |only
18 files changed, 27 insertions(+), 15 deletions(-)
Title: 'TSdbi' Illustration
Diff between TSdata versions 2013.9-1 dated 2013-09-29 and 2015.4-1 dated 2015-05-01
Description: Illustrates the various 'TSdbi' packages with a vignette using time series
data from several sources. The vignette also illustrates some simple time series
manipulation and plotting using packages 'tframe' and 'tfplot'.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 28
MD5 | 21
NAMESPACE | 5
NEWS | 16
build |only
inst/doc/Guide.Stex | 985 +++++++++++++++++-----------
inst/doc/Guide.bib | 32
inst/doc/Guide.pdf |binary
inst/doc/GuideAppendix.Stex |only
inst/doc/GuideAppendix.pdf |only
tests |only
vignettes/Guide.Stex | 1486 +++++++++++++++----------------------------
vignettes/Guide.bib | 32
vignettes/GuideAppendix.Stex |only
14 files changed, 1227 insertions(+), 1378 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Diff between rsdmx versions 0.4-5 dated 2015-02-14 and 0.4-6 dated 2015-05-01
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel
DESCRIPTION | 49 +++--
MD5 | 56 +++---
NAMESPACE | 5
R/Class-SDMX.R | 6
R/Class-SDMXDimension.R | 2
R/Class-SDMXFooter.R |only
R/Class-SDMXFooterMessage.R |only
R/Class-SDMXHeader.R | 4
R/SDMX-methods.R | 12 +
R/SDMXCode-methods.R | 1
R/SDMXCompactData-methods.R | 2
R/SDMXComponents-methods.R | 51 ++++--
R/SDMXDimension-methods.R | 125 +++++++++++----
R/SDMXFooter-methods.R |only
R/SDMXFooterMessage-methods.R |only
R/SDMXGenericData-methods.R | 14 +
R/SDMXHeader-methods.R | 14 -
R/SDMXPrimaryMeasure-methods.R | 73 +++++++-
R/SDMXSchema-methods.R | 2
R/SDMXStructureType-methods.R | 3
R/SDMXTimeDimension-methods.R | 97 +++++++++--
R/readSDMX.R | 27 ++-
README.md | 2
inst/extdata/SDMXDataStructureDefinition_Example_2.1.xml |only
inst/extdata/SDMXDataStructures_Example_2.1.xml |only
inst/extdata/SDMXMessageExample_2.1.xml | 11 +
man/SDMX-class.Rd | 4
man/SDMXFooter-class.Rd |only
man/SDMXFooterMessage-class.Rd |only
man/getSDMXFooter-methods.Rd |only
man/rsdmx-package.Rd | 4
tests/testthat/test_DataStructureDefinition.R | 12 +
tests/testthat/test_DataStructures.R | 10 +
tests/testthat/test_Footer.R |only
34 files changed, 438 insertions(+), 148 deletions(-)
Title: Semantically Rich I/O for the 'NeXML' Format
Diff between RNeXML versions 2.0.1 dated 2014-12-26 and 2.0.2 dated 2015-05-01
Description: Provides access to phyloinformatic data in NeXML format. The
package should add new functionality to R such as the possibility to
manipulate NeXML objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut],
Scott Chamberlain [aut],
Hilmar Lapp [aut],
Kseniia Shumelchyk [aut],
Rutger Vos [aut]
Maintainer: Carl Boettiger
RNeXML-2.0.1/RNeXML/inst/doc/tutorial.R |only
RNeXML-2.0.1/RNeXML/inst/doc/tutorial.Rmd |only
RNeXML-2.0.1/RNeXML/inst/doc/tutorial.html |only
RNeXML-2.0.1/RNeXML/vignettes/Makefile |only
RNeXML-2.0.1/RNeXML/vignettes/figure |only
RNeXML-2.0.1/RNeXML/vignettes/tutorial.Rmd |only
RNeXML-2.0.1/RNeXML/vignettes/tutorial.md |only
RNeXML-2.0.2/RNeXML/DESCRIPTION | 18 -
RNeXML-2.0.2/RNeXML/MD5 | 156 +++++++------
RNeXML-2.0.2/RNeXML/NAMESPACE | 2
RNeXML-2.0.2/RNeXML/NEWS | 13 +
RNeXML-2.0.2/RNeXML/R/add_basic_meta.R | 4
RNeXML-2.0.2/RNeXML/R/get_rdf.R | 9
RNeXML-2.0.2/RNeXML/R/internal_nexml_id.R | 10
RNeXML-2.0.2/RNeXML/R/nexml_publish.R | 16 -
RNeXML-2.0.2/RNeXML/README.md | 174 +++++++--------
RNeXML-2.0.2/RNeXML/build/vignette.rds |binary
RNeXML-2.0.2/RNeXML/inst/doc/S4.R |only
RNeXML-2.0.2/RNeXML/inst/doc/S4.Rmd |only
RNeXML-2.0.2/RNeXML/inst/doc/S4.html |only
RNeXML-2.0.2/RNeXML/inst/doc/metadata.R |only
RNeXML-2.0.2/RNeXML/inst/doc/metadata.Rmd |only
RNeXML-2.0.2/RNeXML/inst/doc/metadata.html |only
RNeXML-2.0.2/RNeXML/inst/doc/simmap.R |only
RNeXML-2.0.2/RNeXML/inst/doc/simmap.Rmd |only
RNeXML-2.0.2/RNeXML/inst/doc/simmap.html |only
RNeXML-2.0.2/RNeXML/inst/doc/sparql.R |only
RNeXML-2.0.2/RNeXML/inst/doc/sparql.Rmd |only
RNeXML-2.0.2/RNeXML/inst/doc/sparql.html |only
RNeXML-2.0.2/RNeXML/inst/simmap.md | 22 -
RNeXML-2.0.2/RNeXML/man/add_basic_meta.Rd | 8
RNeXML-2.0.2/RNeXML/man/add_characters.Rd | 2
RNeXML-2.0.2/RNeXML/man/add_meta.Rd | 2
RNeXML-2.0.2/RNeXML/man/add_namespaces.Rd | 2
RNeXML-2.0.2/RNeXML/man/add_trees.Rd | 2
RNeXML-2.0.2/RNeXML/man/c-ListOfmeta-method.Rd | 2
RNeXML-2.0.2/RNeXML/man/c-meta-method.Rd | 2
RNeXML-2.0.2/RNeXML/man/c-nexml-method.Rd | 2
RNeXML-2.0.2/RNeXML/man/flatten_multiphylo.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_characters.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_characters_list.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_citation.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_flat_trees.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_license.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_metadata.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_namespaces.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_rdf.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_taxa.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_taxa_list.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_taxa_meta.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_taxa_meta_list.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_trees.Rd | 2
RNeXML-2.0.2/RNeXML/man/get_trees_list.Rd | 2
RNeXML-2.0.2/RNeXML/man/meta.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_add.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_figshare.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_get.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_publish.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_read.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_to_simmap.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_validate.Rd | 2
RNeXML-2.0.2/RNeXML/man/nexml_write.Rd | 2
RNeXML-2.0.2/RNeXML/man/reset_id_counter.Rd | 2
RNeXML-2.0.2/RNeXML/man/simmap_ex.Rd | 2
RNeXML-2.0.2/RNeXML/man/simmap_to_nexml.Rd | 2
RNeXML-2.0.2/RNeXML/man/taxize_nexml.Rd | 2
RNeXML-2.0.2/RNeXML/man/toPhylo.Rd | 2
RNeXML-2.0.2/RNeXML/tests/test-all.R | 10
RNeXML-2.0.2/RNeXML/tests/testthat/conversions.R | 3
RNeXML-2.0.2/RNeXML/tests/testthat/geiger_test.R | 2
RNeXML-2.0.2/RNeXML/tests/testthat/helper-RNeXML.R |only
RNeXML-2.0.2/RNeXML/tests/testthat/test_ape.R | 9
RNeXML-2.0.2/RNeXML/tests/testthat/test_characters.R | 2
RNeXML-2.0.2/RNeXML/tests/testthat/test_comp_analysis.R | 1
RNeXML-2.0.2/RNeXML/tests/testthat/test_get_characters.R | 4
RNeXML-2.0.2/RNeXML/tests/testthat/test_inheritance.R | 2
RNeXML-2.0.2/RNeXML/tests/testthat/test_meta.R | 2
RNeXML-2.0.2/RNeXML/tests/testthat/test_meta_extract.R | 1
RNeXML-2.0.2/RNeXML/tests/testthat/test_parsing.R | 2
RNeXML-2.0.2/RNeXML/tests/testthat/test_publish.R | 1
RNeXML-2.0.2/RNeXML/tests/testthat/test_serializing.R | 3
RNeXML-2.0.2/RNeXML/tests/testthat/test_simmap.R | 1
RNeXML-2.0.2/RNeXML/tests/testthat/test_taxonomy.R | 3
RNeXML-2.0.2/RNeXML/tests/testthat/test_toplevel_api.R | 7
RNeXML-2.0.2/RNeXML/tests/testthat/test_validate.R | 1
RNeXML-2.0.2/RNeXML/tests/testthat/treebase_test.R | 4
RNeXML-2.0.2/RNeXML/vignettes/S4.Rmd |only
RNeXML-2.0.2/RNeXML/vignettes/metadata.Rmd |only
RNeXML-2.0.2/RNeXML/vignettes/references.bib |only
RNeXML-2.0.2/RNeXML/vignettes/simmap.Rmd |only
RNeXML-2.0.2/RNeXML/vignettes/sparql.Rmd |only
91 files changed, 256 insertions(+), 306 deletions(-)
Title: 3D Visualization Using OpenGL
Diff between rgl versions 0.95.1201 dated 2014-12-21 and 0.95.1247 dated 2015-05-01
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler
Maintainer: Duncan Murdoch
DESCRIPTION | 8
MD5 | 60
NAMESPACE | 22
R/Sweave_knitr.R |only
R/animate.R | 3
R/callbacks.R | 6
R/device.R | 104
R/interpSetter.R |only
R/webGL.R | 1134 ++++---
R/webGLcontrols.R |only
build/vignette.rds |binary
inst/NEWS | 27
inst/WebGL/template.html | 34
inst/doc/WebGL.R |only
inst/doc/WebGL.Rmd |only
inst/doc/WebGL.html |only
inst/doc/rgl.Rmd | 29
inst/doc/rgl.html | 7329 ++++++++++++++++++++++++++---------------------
man/3dobjects.Rd | 6
man/ageSetter.Rd |only
man/callbacks.Rd | 15
man/hook_rgl.Rd |only
man/par3d.Rd | 2
man/propertySetter.Rd |only
man/rgl-package.Rd | 3
man/rgl.Sweave.Rd | 6
man/rgl.useNULL.Rd | 8
man/webGLcontrols.Rd |only
man/writeWebGL.Rd | 31
src/ABCLineSet.cpp | 35
src/api.h | 2
src/callbacks.cpp | 50
src/init.cpp | 2
vignettes/WebGL.Rmd |only
vignettes/WebGL.md |only
vignettes/rgl.Rmd | 29
vignettes/setup.R | 66
37 files changed, 5177 insertions(+), 3834 deletions(-)
Title: Quality Improvement Charts
Diff between qicharts versions 0.1.1 dated 2014-11-11 and 0.1.3 dated 2015-05-01
Description: Functions for making run charts and basic Shewhart control
charts for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej
qicharts-0.1.1/qicharts/vignettes/figure |only
qicharts-0.1.3/qicharts/DESCRIPTION | 14
qicharts-0.1.3/qicharts/MD5 | 31 -
qicharts-0.1.3/qicharts/NAMESPACE | 2
qicharts-0.1.3/qicharts/NEWS | 54 ++
qicharts-0.1.3/qicharts/R/paretochart.R | 160 ++++----
qicharts-0.1.3/qicharts/R/qic.R | 311 +++++++++++-----
qicharts-0.1.3/qicharts/R/trc.R | 266 ++++++++------
qicharts-0.1.3/qicharts/build/vignette.rds |binary
qicharts-0.1.3/qicharts/inst/doc/runcharts.R | 110 ++---
qicharts-0.1.3/qicharts/inst/doc/runcharts.html | 444 ++++++++++++------------
qicharts-0.1.3/qicharts/man/paretochart.Rd | 3
qicharts-0.1.3/qicharts/man/qic.Rd | 47 +-
qicharts-0.1.3/qicharts/man/trc.Rd | 27 -
14 files changed, 828 insertions(+), 641 deletions(-)
Title: Communication Between Editor and Viewer for Literate Programs
Diff between patchSynctex versions 0.1-0 dated 2015-01-11 and 0.1-1 dated 2015-05-01
Description: This utility eases the debugging of literate documents
('noweb' files) by patching the synchronization information
(the '.synctex(.gz)' file) produced by 'pdflatex' with
concordance information produced by 'Sweave' or 'knitr' and
'Sweave' or 'knitr' ; this allows for bilateral communication
between a text editor (visualizing the 'noweb' source) and
a viewer (visualizing the resultant 'PDF'), thus bypassing
the intermediate 'TeX' file.
Author: Jan Gleixner [aut],
Daniel Hicks [ctb],
Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier
.Rinstignore |only
DESCRIPTION | 26 ++++++++++++++------------
MD5 | 5 +++--
NEWS |only
R/patchSynctex.R | 11 +++++++++--
5 files changed, 26 insertions(+), 16 deletions(-)
Title: Analysis of Multiple Social Networks with Algebra
Diff between multiplex versions 1.2 dated 2014-02-06 and 1.5 dated 2015-05-01
Description: Algebraic procedures for the analysis of multiple social networks
are delivered with this package. Among other things, it is possible to
create and manipulate multivariate network data with different formats,
and there are effective ways available to treat multiple networks with
routines that combine algebraic systems like the partially ordered
semigroup or the semiring structure together with the relational bundles
occurring in different types of multivariate network data sets. As well an
algebraic approach for two-mode networks is made through Galois
derivations between families of the pair of subsets.
Author: J. Antonio Rivero Ostoic
Maintainer: Antonio Rivero Ostoic
multiplex-1.2/multiplex/R/orden.R |only
multiplex-1.2/multiplex/R/po.levels.R |only
multiplex-1.2/multiplex/man/orden.Rd |only
multiplex-1.2/multiplex/man/po.levels.Rd |only
multiplex-1.5/multiplex/DESCRIPTION | 30
multiplex-1.5/multiplex/MD5 | 177 +--
multiplex-1.5/multiplex/NAMESPACE | 1
multiplex-1.5/multiplex/R/as.semigroup.R | 41
multiplex-1.5/multiplex/R/as.strings.R | 16
multiplex-1.5/multiplex/R/bundle.census.R | 609 ++++++-----
multiplex-1.5/multiplex/R/bundles.R | 1218 ++++++++++++-----------
multiplex-1.5/multiplex/R/cngr.R | 98 -
multiplex-1.5/multiplex/R/convert.R | 75 -
multiplex-1.5/multiplex/R/cph.R | 24
multiplex-1.5/multiplex/R/decomp.R | 239 ++--
multiplex-1.5/multiplex/R/dhc.R | 24
multiplex-1.5/multiplex/R/diagram.R | 21
multiplex-1.5/multiplex/R/diagram.levels.R |only
multiplex-1.5/multiplex/R/dichot.R | 2
multiplex-1.5/multiplex/R/edgeT.R | 17
multiplex-1.5/multiplex/R/expos.R | 405 +++----
multiplex-1.5/multiplex/R/galois.R |only
multiplex-1.5/multiplex/R/hierar.R | 157 +-
multiplex-1.5/multiplex/R/iinc.R | 2
multiplex-1.5/multiplex/R/is.mc.R | 4
multiplex-1.5/multiplex/R/isom.R | 18
multiplex-1.5/multiplex/R/jnt.R | 31
multiplex-1.5/multiplex/R/ltlw.R | 290 ++---
multiplex-1.5/multiplex/R/men.R | 13
multiplex-1.5/multiplex/R/ngbs.R | 28
multiplex-1.5/multiplex/R/pacnet.R | 501 ++++-----
multiplex-1.5/multiplex/R/partial.order.R | 124 +-
multiplex-1.5/multiplex/R/perm.R | 67 -
multiplex-1.5/multiplex/R/pi.rels.R | 100 -
multiplex-1.5/multiplex/R/prev.R | 211 +--
multiplex-1.5/multiplex/R/print.reduced.R |only
multiplex-1.5/multiplex/R/rbox.R | 590 +++++------
multiplex-1.5/multiplex/R/read.gml.R | 267 +++--
multiplex-1.5/multiplex/R/read.srt.R | 371 +++----
multiplex-1.5/multiplex/R/redl.R |only
multiplex-1.5/multiplex/R/reduc.R | 154 --
multiplex-1.5/multiplex/R/reducs.R | 195 +--
multiplex-1.5/multiplex/R/rel.sys.R | 112 +-
multiplex-1.5/multiplex/R/relabel.R | 38
multiplex-1.5/multiplex/R/rm.isol.R | 245 ++--
multiplex-1.5/multiplex/R/semigroup.R | 378 +++----
multiplex-1.5/multiplex/R/semiring.R | 408 +++----
multiplex-1.5/multiplex/R/signed.R | 220 +---
multiplex-1.5/multiplex/R/slc.R | 53 -
multiplex-1.5/multiplex/R/sprt.R | 266 ++---
multiplex-1.5/multiplex/R/strings.R | 561 +++++-----
multiplex-1.5/multiplex/R/summaryBundles.R | 736 +++++++------
multiplex-1.5/multiplex/R/swp.R | 12
multiplex-1.5/multiplex/R/symclos.R | 67 -
multiplex-1.5/multiplex/R/tclos.R | 54 -
multiplex-1.5/multiplex/R/transf.R | 171 +--
multiplex-1.5/multiplex/R/transl.R | 128 +-
multiplex-1.5/multiplex/R/wordT.R | 19
multiplex-1.5/multiplex/R/write.dat.R | 48
multiplex-1.5/multiplex/R/write.dl.R | 154 +-
multiplex-1.5/multiplex/R/write.gml.R | 159 +--
multiplex-1.5/multiplex/R/write.srt.R | 109 +-
multiplex-1.5/multiplex/R/zbind.R | 114 +-
multiplex-1.5/multiplex/R/zbnd.R | 45
multiplex-1.5/multiplex/build |only
multiplex-1.5/multiplex/inst/CHANGELOG | 49
multiplex-1.5/multiplex/inst/doc |only
multiplex-1.5/multiplex/man/bundle.census.Rd | 12
multiplex-1.5/multiplex/man/bundles.Rd | 24
multiplex-1.5/multiplex/man/convert.Rd | 2
multiplex-1.5/multiplex/man/dhc.Rd | 47
multiplex-1.5/multiplex/man/diagram.Rd | 20
multiplex-1.5/multiplex/man/diagram.levels.Rd |only
multiplex-1.5/multiplex/man/galois.Rd |only
multiplex-1.5/multiplex/man/jnt.Rd | 39
multiplex-1.5/multiplex/man/men.Rd | 50
multiplex-1.5/multiplex/man/multiplex-package.Rd | 6
multiplex-1.5/multiplex/man/ngbs.Rd | 36
multiplex-1.5/multiplex/man/partial.order.Rd | 24
multiplex-1.5/multiplex/man/print.reduced.Rd |only
multiplex-1.5/multiplex/man/read.gml.Rd | 21
multiplex-1.5/multiplex/man/redl.Rd |only
multiplex-1.5/multiplex/man/reduc.Rd | 1
multiplex-1.5/multiplex/man/reducs.Rd | 42
multiplex-1.5/multiplex/man/rel.sys.Rd | 6
multiplex-1.5/multiplex/man/slc.Rd | 36
multiplex-1.5/multiplex/man/sprt.Rd | 39
multiplex-1.5/multiplex/man/strings.Rd | 6
multiplex-1.5/multiplex/man/summaryBundles.Rd | 10
multiplex-1.5/multiplex/man/swp.Rd | 49
multiplex-1.5/multiplex/man/symclos.Rd | 36
multiplex-1.5/multiplex/man/tclos.Rd | 38
multiplex-1.5/multiplex/man/transf.Rd | 8
multiplex-1.5/multiplex/man/transl.Rd | 38
multiplex-1.5/multiplex/man/zbnd.Rd | 39
multiplex-1.5/multiplex/vignettes |only
96 files changed, 5409 insertions(+), 5486 deletions(-)
Title: Symbolic Computation and More with Multivariate Polynomials
Diff between mpoly versions 0.0.5 dated 2014-04-29 and 0.1.0 dated 2015-05-01
Description: Data structures, operations, and functions for the symbolic
manipulation of multivariate polynomials.
Author: David Kahle [aut, cre]
Maintainer: David Kahle
mpoly-0.0.5/mpoly/R/mpolyAdd.R |only
mpoly-0.0.5/mpoly/R/mpolyExp.R |only
mpoly-0.0.5/mpoly/R/mpolyListAdd.R |only
mpoly-0.0.5/mpoly/R/mpolyListProd.R |only
mpoly-0.0.5/mpoly/R/mpolyProd.R |only
mpoly-0.0.5/mpoly/man/mpolyAdd.Rd |only
mpoly-0.0.5/mpoly/man/mpolyExp.Rd |only
mpoly-0.0.5/mpoly/man/mpolyListAdd.Rd |only
mpoly-0.0.5/mpoly/man/mpolyListProd.Rd |only
mpoly-0.0.5/mpoly/man/mpolyListSub.Rd |only
mpoly-0.0.5/mpoly/man/mpolyProd.Rd |only
mpoly-0.0.5/mpoly/man/mpolySub.Rd |only
mpoly-0.1.0/mpoly/DESCRIPTION | 29
mpoly-0.1.0/mpoly/MD5 | 111 +--
mpoly-0.1.0/mpoly/NAMESPACE | 14
mpoly-0.1.0/mpoly/NEWS | 17
mpoly-0.1.0/mpoly/R/as.function.mpoly.R | 14
mpoly-0.1.0/mpoly/R/as.function.mpolyList.R | 18
mpoly-0.1.0/mpoly/R/as.mpoly.R | 66 +
mpoly-0.1.0/mpoly/R/burst.R | 143 +---
mpoly-0.1.0/mpoly/R/deriv.mpoly.R | 4
mpoly-0.1.0/mpoly/R/grobner.R | 15
mpoly-0.1.0/mpoly/R/is.linear.R |only
mpoly-0.1.0/mpoly/R/is.mpoly.R | 8
mpoly-0.1.0/mpoly/R/mp.R | 863 ++++++++++++++++---------
mpoly-0.1.0/mpoly/R/mpoly.R | 219 +++---
mpoly-0.1.0/mpoly/R/mpolyArithmetic.R |only
mpoly-0.1.0/mpoly/R/mpolyEqual.R | 31
mpoly-0.1.0/mpoly/R/mpolyList.R | 6
mpoly-0.1.0/mpoly/R/mpolyListArithmetic.R |only
mpoly-0.1.0/mpoly/R/partitions.R | 5
mpoly-0.1.0/mpoly/R/permutations.R | 28
mpoly-0.1.0/mpoly/R/print.mpoly.R | 7
mpoly-0.1.0/mpoly/R/reorder.mpoly.R | 21
mpoly-0.1.0/mpoly/R/round.mpoly.R |only
mpoly-0.1.0/mpoly/R/tuples.R | 8
mpoly-0.1.0/mpoly/R/zzz.r | 3
mpoly-0.1.0/mpoly/README.md |only
mpoly-0.1.0/mpoly/man/LCM.Rd | 9
mpoly-0.1.0/mpoly/man/as.function.mpoly.Rd | 17
mpoly-0.1.0/mpoly/man/as.function.mpolyList.Rd | 20
mpoly-0.1.0/mpoly/man/as.mpoly.Rd | 42 -
mpoly-0.1.0/mpoly/man/burst.Rd | 20
mpoly-0.1.0/mpoly/man/deriv.mpoly.Rd | 11
mpoly-0.1.0/mpoly/man/gradient.Rd | 4
mpoly-0.1.0/mpoly/man/grobner.Rd | 20
mpoly-0.1.0/mpoly/man/insert.Rd | 8
mpoly-0.1.0/mpoly/man/is.linear.Rd |only
mpoly-0.1.0/mpoly/man/is.mpoly.Rd | 4
mpoly-0.1.0/mpoly/man/is.mpolyList.Rd | 4
mpoly-0.1.0/mpoly/man/is.wholenumber.Rd | 7
mpoly-0.1.0/mpoly/man/mp.Rd | 109 ---
mpoly-0.1.0/mpoly/man/mpoly.Rd | 33
mpoly-0.1.0/mpoly/man/mpolyArithmetic.Rd |only
mpoly-0.1.0/mpoly/man/mpolyEqual.Rd | 25
mpoly-0.1.0/mpoly/man/mpolyList.Rd | 4
mpoly-0.1.0/mpoly/man/mpolyListArithmetic.Rd |only
mpoly-0.1.0/mpoly/man/partitions.Rd | 9
mpoly-0.1.0/mpoly/man/permutations.Rd | 7
mpoly-0.1.0/mpoly/man/print.mpoly.Rd | 18
mpoly-0.1.0/mpoly/man/print.mpolyList.Rd | 14
mpoly-0.1.0/mpoly/man/reorder.mpoly.Rd | 15
mpoly-0.1.0/mpoly/man/round.mpoly.Rd |only
mpoly-0.1.0/mpoly/man/terms.mpoly.Rd | 6
mpoly-0.1.0/mpoly/man/tuples.Rd | 9
mpoly-0.1.0/mpoly/man/vars.Rd | 4
mpoly-0.1.0/mpoly/tests |only
67 files changed, 1154 insertions(+), 895 deletions(-)
Title: Support Functions and Data for "Ecological Models and Data"
Diff between emdbook versions 1.3.7 dated 2015-01-12 and 1.3.8 dated 2015-05-01
Description: Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).
Author: Ben Bolker
Maintainer: Ben Bolker
DESCRIPTION | 12 ++++++------
MD5 | 7 ++++---
inst/NEWS.Rd | 7 +++++++
man/Damsel.Rd | 10 +++++-----
man/GobySurvival.Rd |only
5 files changed, 22 insertions(+), 14 deletions(-)
Title: General Purpose Interface to Elasticsearch
Diff between elastic versions 0.3.0 dated 2015-01-29 and 0.4.0 dated 2015-05-01
Description: Connect to Elasticsearch, a NoSQL database built on the Java Virtual Machine.
Interacts with the Elasticsearch HTTP API (http://elasticsearch.org), including
functions for setting connection details to Elasticsearch instances, loading bulk
data, searching for documents with both HTTP query variables and JSON based body
requests. In addition, elastic provides functions for interacting with APIs for
indices, documents, nodes, clusters, an interface to the cat API, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain
elastic-0.3.0/elastic/R/benchmark.R |only
elastic-0.3.0/elastic/R/search.r |only
elastic-0.3.0/elastic/man/benchmark.Rd |only
elastic-0.3.0/elastic/tests/testthat/test-search.r |only
elastic-0.4.0/elastic/DESCRIPTION | 26 +-
elastic-0.4.0/elastic/MD5 | 163 ++++++++-------
elastic-0.4.0/elastic/NAMESPACE | 8
elastic-0.4.0/elastic/NEWS | 42 ++++
elastic-0.4.0/elastic/R/Search.R |only
elastic-0.4.0/elastic/R/Search_uri.R |only
elastic-0.4.0/elastic/R/alias.R | 52 ++--
elastic-0.4.0/elastic/R/cat.r | 168 +++++++++++++---
elastic-0.4.0/elastic/R/connect.R | 137 +++++--------
elastic-0.4.0/elastic/R/count.r | 1
elastic-0.4.0/elastic/R/docs_bulk.r | 117 ++++++++++-
elastic-0.4.0/elastic/R/docs_create.R | 18 -
elastic-0.4.0/elastic/R/docs_delete.R | 15 -
elastic-0.4.0/elastic/R/docs_get.r | 48 ++--
elastic-0.4.0/elastic/R/docs_mget.r | 75 ++++---
elastic-0.4.0/elastic/R/elastic-package.r | 53 +++--
elastic-0.4.0/elastic/R/explain.R | 15 -
elastic-0.4.0/elastic/R/httr-verbs.R | 81 ++++---
elastic-0.4.0/elastic/R/index.R | 126 +++++-------
elastic-0.4.0/elastic/R/mapping.R | 33 +--
elastic-0.4.0/elastic/R/mlt.R | 88 ++++----
elastic-0.4.0/elastic/R/nodes.R | 65 ++++--
elastic-0.4.0/elastic/R/onstart.R | 1
elastic-0.4.0/elastic/R/ping.r | 14 -
elastic-0.4.0/elastic/R/scroll.R | 2
elastic-0.4.0/elastic/R/search_shards.R | 9
elastic-0.4.0/elastic/R/searchapis.R | 6
elastic-0.4.0/elastic/R/tokenizer_set.R | 14 -
elastic-0.4.0/elastic/R/zzz.r | 40 +++
elastic-0.4.0/elastic/README.md | 103 ++++++---
elastic-0.4.0/elastic/build/vignette.rds |binary
elastic-0.4.0/elastic/inst/doc/elastic_intro.Rmd | 29 +-
elastic-0.4.0/elastic/inst/doc/elastic_intro.html | 129 +++++-------
elastic-0.4.0/elastic/inst/doc/search.Rmd | 36 +--
elastic-0.4.0/elastic/inst/doc/search.html | 136 +++++-------
elastic-0.4.0/elastic/inst/examples/plos_data.json |only
elastic-0.4.0/elastic/inst/ignore/appveyor.yml |only
elastic-0.4.0/elastic/inst/ignore/benchmark.R |only
elastic-0.4.0/elastic/inst/ignore/es_stats.r | 7
elastic-0.4.0/elastic/inst/ignore/notes1.r |only
elastic-0.4.0/elastic/inst/ignore/notes2.r |only
elastic-0.4.0/elastic/inst/ignore/notes3.r |only
elastic-0.4.0/elastic/inst/ignore/notes4.r |only
elastic-0.4.0/elastic/inst/ignore/notes5.r |only
elastic-0.4.0/elastic/inst/vign/elastic_intro.Rmd | 16 -
elastic-0.4.0/elastic/inst/vign/elastic_intro.md | 29 +-
elastic-0.4.0/elastic/inst/vign/search.md | 36 +--
elastic-0.4.0/elastic/man/Search.Rd | 178 +++++++++++++----
elastic-0.4.0/elastic/man/Search_uri.Rd |only
elastic-0.4.0/elastic/man/alias.Rd | 2
elastic-0.4.0/elastic/man/cat.Rd | 86 ++++++--
elastic-0.4.0/elastic/man/cluster.Rd | 2
elastic-0.4.0/elastic/man/connect.Rd | 13 -
elastic-0.4.0/elastic/man/count.Rd | 2
elastic-0.4.0/elastic/man/docs_bulk.Rd | 51 ++++
elastic-0.4.0/elastic/man/docs_create.Rd | 2
elastic-0.4.0/elastic/man/docs_delete.Rd | 6
elastic-0.4.0/elastic/man/docs_get.Rd | 13 -
elastic-0.4.0/elastic/man/docs_mget.Rd | 16 +
elastic-0.4.0/elastic/man/documents.Rd | 2
elastic-0.4.0/elastic/man/elastic.Rd | 56 +++--
elastic-0.4.0/elastic/man/es_auth.Rd | 22 --
elastic-0.4.0/elastic/man/es_parse.Rd | 2
elastic-0.4.0/elastic/man/explain.Rd | 2
elastic-0.4.0/elastic/man/index.Rd | 7
elastic-0.4.0/elastic/man/mapping.Rd | 2
elastic-0.4.0/elastic/man/mlt.Rd | 72 +++---
elastic-0.4.0/elastic/man/nodes.Rd | 15 +
elastic-0.4.0/elastic/man/ping.Rd | 2
elastic-0.4.0/elastic/man/preference.Rd | 2
elastic-0.4.0/elastic/man/scroll.Rd | 2
elastic-0.4.0/elastic/man/search_body.Rd | 2
elastic-0.4.0/elastic/man/search_shards.Rd | 2
elastic-0.4.0/elastic/man/searchapis.Rd | 8
elastic-0.4.0/elastic/man/tokenizer_set.Rd | 2
elastic-0.4.0/elastic/man/units-distance.Rd | 2
elastic-0.4.0/elastic/man/units-time.Rd | 2
elastic-0.4.0/elastic/tests/other |only
elastic-0.4.0/elastic/tests/testthat/test-alias.R |only
elastic-0.4.0/elastic/tests/testthat/test-cat.R |only
elastic-0.4.0/elastic/tests/testthat/test-cluster.R |only
elastic-0.4.0/elastic/tests/testthat/test-connect.R |only
elastic-0.4.0/elastic/tests/testthat/test-count.R |only
elastic-0.4.0/elastic/tests/testthat/test-docs.R |only
elastic-0.4.0/elastic/tests/testthat/test-explain.R |only
elastic-0.4.0/elastic/tests/testthat/test-indices.R |only
elastic-0.4.0/elastic/tests/testthat/test-mappings.R |only
elastic-0.4.0/elastic/tests/testthat/test-nodes.R |only
elastic-0.4.0/elastic/tests/testthat/test-ping.R |only
elastic-0.4.0/elastic/tests/testthat/test-search.R |only
elastic-0.4.0/elastic/tests/testthat/test-search_uri.R |only
elastic-0.4.0/elastic/vignettes/elastic_intro.Rmd | 29 +-
elastic-0.4.0/elastic/vignettes/search.Rmd | 36 +--
97 files changed, 1595 insertions(+), 983 deletions(-)
Title: Configural Frequencies Analysis Using Log-Linear Modeling
Diff between confreq versions 1.3 dated 2014-11-06 and 1.3-1 dated 2015-05-01
Description: Offers several functions for Configural Frequencies
Analysis (CFA), which is a useful statistical tool for the analysis of
multiway contingency tables. CFA was introduced by G. A. Lienert as
'Konfigurations Frequenz Analyse - KFA'.
Author: Joerg-Henrik Heine, R.W. Alexandrowicz (function stirling_cfa() )
and some package testing by Mark Stemmler
Maintainer: Joerg-Henrik Heine
DESCRIPTION | 16 +++++++-------
MD5 | 52 +++++++++++++++++++++++-----------------------
NAMESPACE | 3 +-
NEWS | 10 ++++++++
R/CFA.R | 15 ++++++++-----
R/binomial_test_cfa.R | 38 ++++++++++++++++++++++++++-------
R/confreq-package.R | 3 --
R/expected_cfa.R | 2 -
R/summary.CFA.R | 40 +++++++++++++++++++++++++++--------
R/summary.S2CFA.R | 3 +-
man/CFA.Rd | 3 +-
man/S2CFA.Rd | 3 +-
man/binomial_test_cfa.Rd | 3 +-
man/chi_local_test_cfa.Rd | 3 +-
man/confreq-package.Rd | 3 +-
man/dat2fre.Rd | 3 +-
man/design_cfg_cfa.Rd | 3 +-
man/df_des_cfa.Rd | 3 +-
man/expected_cfa.Rd | 3 +-
man/fre2dat.Rd | 3 +-
man/ftab.Rd | 3 +-
man/lr.Rd | 3 +-
man/pos_cfg_cfa.Rd | 3 +-
man/stirling_cfa.Rd | 3 +-
man/summary.CFA.Rd | 12 +++++++---
man/summary.S2CFA.Rd | 3 +-
man/z_tests_cfa.Rd | 3 +-
27 files changed, 163 insertions(+), 79 deletions(-)