Title: Lasso Method for RCON(V,E) Models
Description: RCON(V, E) models (Højsgaard, et al., 2008) are a kind of restriction of the Gaussian Graphical Models defined by a set of equality constraints on the entries of the concentration matrix. sglasso package implements the structured graphical lasso (sglasso) estimator proposed in Abbruzzo et al. (2014) for the weighted l1-penalized RCON(V, E) model. Two cyclic coordinate algorithms are implemented to compute the sglasso estimator, i.e. a cyclic coordinate minimization (CCM) and a cyclic coordinate descent (CCD) algorithm.
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between sglasso versions 1.1-1 dated 2015-04-02 and 1.2 dated 2015-05-04
sglasso-1.1-1/sglasso/man/dglars-internal.Rd |only sglasso-1.2/sglasso/ChangeLog | 19 ++- sglasso-1.2/sglasso/DESCRIPTION | 14 +- sglasso-1.2/sglasso/MD5 | 64 ++++++---- sglasso-1.2/sglasso/NAMESPACE | 5 sglasso-1.2/sglasso/R/fglasso.R | 6 sglasso-1.2/sglasso/R/fglasso_model2mask.R | 2 sglasso-1.2/sglasso/R/gplot.R |only sglasso-1.2/sglasso/R/gplot.fglasso.R |only sglasso-1.2/sglasso/R/gplot.sglasso.R |only sglasso-1.2/sglasso/R/klcv.R | 5 sglasso-1.2/sglasso/R/loglik.R | 8 - sglasso-1.2/sglasso/R/make_sglasso.R | 17 +- sglasso-1.2/sglasso/R/plot.klcv.R |only sglasso-1.2/sglasso/R/print.klcv.R | 4 sglasso-1.2/sglasso/R/print.sglasso.R | 7 - sglasso-1.2/sglasso/R/sglasso.R | 10 - sglasso-1.2/sglasso/R/sglasso.fit.R | 24 +-- sglasso-1.2/sglasso/R/summary.sglasso.R | 15 +- sglasso-1.2/sglasso/R/zero.R |only sglasso-1.2/sglasso/data |only sglasso-1.2/sglasso/inst |only sglasso-1.2/sglasso/man/Kh.Rd | 7 - sglasso-1.2/sglasso/man/fglasso.Rd | 67 +++++----- sglasso-1.2/sglasso/man/gplot.Rd |only sglasso-1.2/sglasso/man/gplot.fglasso.Rd |only sglasso-1.2/sglasso/man/gplot.sglasso.Rd |only sglasso-1.2/sglasso/man/klcv.Rd | 23 ++- sglasso-1.2/sglasso/man/loglik.Rd | 13 +- sglasso-1.2/sglasso/man/neisseria.Rd |only sglasso-1.2/sglasso/man/plot.klcv.Rd |only sglasso-1.2/sglasso/man/plot.sglasso.Rd | 6 sglasso-1.2/sglasso/man/sglasso-internal.Rd |only sglasso-1.2/sglasso/man/sglasso-package.Rd | 16 +- sglasso-1.2/sglasso/man/sglasso.Rd | 26 ++-- sglasso-1.2/sglasso/man/summary.sglasso.Rd | 16 +- sglasso-1.2/sglasso/src/sglasso_ccd_path.f90 | 149 ++++++++++++----------- sglasso-1.2/sglasso/src/sglasso_ccd_single.f90 | 158 ++++++++++++------------- sglasso-1.2/sglasso/src/sglasso_ccm_path.f90 | 76 ++++++------ sglasso-1.2/sglasso/src/sglasso_ccm_single.f90 | 86 +++++++------ 40 files changed, 457 insertions(+), 386 deletions(-)
Title: Sample Size Calculations for Complex Surveys
Description: Computes the required sample size for estimation of totals, means
and proportions under complex sampling designs.
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas <hugogutierrez@usantotomas.edu.co>
Diff between samplesize4surveys versions 2.2.0 dated 2015-04-29 and 2.4.0.900 dated 2015-05-04
samplesize4surveys-2.2.0/samplesize4surveys/data/BigLucyT0T1.txt.gz |only samplesize4surveys-2.4.0.900/samplesize4surveys/DESCRIPTION | 12 samplesize4surveys-2.4.0.900/samplesize4surveys/MD5 | 61 ++- samplesize4surveys-2.4.0.900/samplesize4surveys/NAMESPACE | 14 samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4ddm.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4ddp.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4dm.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4dp.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4m.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/b4p.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4ddm.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4ddp.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4dm.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4dp.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4m.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/e4p.R | 141 ++++---- samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4ddm.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4ddmH.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4ddp.R | 5 samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4ddpH.R |only samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4dm.R | 4 samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4dmH.R | 12 samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4mH.R | 170 +++++----- samplesize4surveys-2.4.0.900/samplesize4surveys/R/ss4p.R | 28 - samplesize4surveys-2.4.0.900/samplesize4surveys/build |only samplesize4surveys-2.4.0.900/samplesize4surveys/data/BigLucyT0T1.rda |only samplesize4surveys-2.4.0.900/samplesize4surveys/inst |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4ddm.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4ddp.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4dm.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4dp.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4m.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/b4p.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4ddm.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4ddp.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4dm.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4dp.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4m.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/e4p.Rd | 12 samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4ddm.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4ddmH.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4ddp.Rd | 4 samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4ddpH.Rd |only samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4dm.Rd | 2 samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4dmH.Rd | 2 samplesize4surveys-2.4.0.900/samplesize4surveys/man/ss4p.Rd | 20 - samplesize4surveys-2.4.0.900/samplesize4surveys/vignettes |only 47 files changed, 266 insertions(+), 221 deletions(-)
More information about samplesize4surveys at CRAN
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Title: Applied Geochemistry EDA
Description: Geological Survey of Canada (GSC) functions for exploratory data analysis with applied geochemical data, with special application to the estimation of background ranges and identification of outliers, 'anomalies', to support mineral exploration and environmental studies. Additional functions are provided to support analytical data QA/QC, ANOVA for investigations of field sampling and analytical variability, and utility tasks. NOTE: function caplot() for concentration-area plots employs package 'akima', however, 'akima' is only licensed for not-for-profit use. Therefore, not-for-profit users of 'rgr' will have to independently make package 'akima' available through library(....); and use of function caplot() by for-profit users will fail.
Author: Robert G. Garrett
Maintainer: Robert G. Garrett <garrett@NRCan.gc.ca>
Diff between rgr versions 1.1.10 dated 2015-01-03 and 1.1.11 dated 2015-05-04
rgr-1.1.10/rgr/inst/doc/What_is_in_rgr_1-1-10.pdf |only rgr-1.1.10/rgr/inst/doc/rgr_Overview_1-1-10.pdf |only rgr-1.1.10/rgr/inst/doc/rgr_func_list_1-1-10.pdf |only rgr-1.1.10/rgr/man/rgr_1.1.10-package.Rd |only rgr-1.1.11/rgr/DESCRIPTION | 10 - rgr-1.1.11/rgr/MD5 | 152 +++++++++++----------- rgr-1.1.11/rgr/NAMESPACE | 2 rgr-1.1.11/rgr/R/fences.summary.R | 41 ++++- rgr-1.1.11/rgr/R/framework.summary.R | 39 +++-- rgr-1.1.11/rgr/R/gx.hist.R | 28 ++-- rgr-1.1.11/rgr/R/gx.md.display.R | 39 ++--- rgr-1.1.11/rgr/R/gx.md.print.R | 39 +++-- rgr-1.1.11/rgr/R/gx.mvalloc.print.R | 31 ++-- rgr-1.1.11/rgr/R/gx.ngr.ltdl.R |only rgr-1.1.11/rgr/R/gx.ngr.skew.R |only rgr-1.1.11/rgr/R/gx.ngr.stats.R |only rgr-1.1.11/rgr/R/gx.ngr.summary.R |only rgr-1.1.11/rgr/R/gx.rma.R | 126 ++++++++++-------- rgr-1.1.11/rgr/R/gx.rqpca.plot.R | 50 +++++-- rgr-1.1.11/rgr/R/gx.rqpca.print.R | 46 +----- rgr-1.1.11/rgr/R/gx.rqpca.save.R |only rgr-1.1.11/rgr/R/gx.triples.aov.R | 9 - rgr-1.1.11/rgr/R/inset.exporter.R | 23 ++- rgr-1.1.11/rgr/R/map.eda7.R | 6 rgr-1.1.11/rgr/R/map.eda8.R | 6 rgr-1.1.11/rgr/R/map.z.R | 12 - rgr-1.1.11/rgr/R/xyplot.eda7.R | 8 - rgr-1.1.11/rgr/R/xyplot.eda8.R | 6 rgr-1.1.11/rgr/R/xyplot.z.R | 12 - rgr-1.1.11/rgr/data/ad.test.rda |binary rgr-1.1.11/rgr/data/crm.test.new.rda |binary rgr-1.1.11/rgr/data/crm.test.rda |binary rgr-1.1.11/rgr/data/fix.test.asis.rda |binary rgr-1.1.11/rgr/data/fix.test.rda |binary rgr-1.1.11/rgr/data/kola.c.rda |binary rgr-1.1.11/rgr/data/kola.o.rda |binary rgr-1.1.11/rgr/data/ms.data1.rda |binary rgr-1.1.11/rgr/data/ms.data2.rda |binary rgr-1.1.11/rgr/data/ms.data3.rda |binary rgr-1.1.11/rgr/data/ogrady.mat2open.rda |binary rgr-1.1.11/rgr/data/ogrady.rda |binary rgr-1.1.11/rgr/data/sind.mat2open.rda |binary rgr-1.1.11/rgr/data/sind.rda |binary rgr-1.1.11/rgr/data/triples.test1.rda |binary rgr-1.1.11/rgr/data/triples.test2.rda |binary rgr-1.1.11/rgr/inst/doc/What_is_in_rgr_1-1-11.pdf |only rgr-1.1.11/rgr/inst/doc/rgr_Overview_1-1-11.pdf |only rgr-1.1.11/rgr/inst/doc/rgr_func_list_1-1-11.pdf |only rgr-1.1.11/rgr/man/bwplots.Rd | 2 rgr-1.1.11/rgr/man/bwplots.by.var.Rd | 2 rgr-1.1.11/rgr/man/bxplot.Rd | 2 rgr-1.1.11/rgr/man/cnpplt.Rd | 2 rgr-1.1.11/rgr/man/crm.plot.Rd | 8 - rgr-1.1.11/rgr/man/crm.plot.new.Rd | 4 rgr-1.1.11/rgr/man/fences.summary.Rd | 12 + rgr-1.1.11/rgr/man/framework.summary.Rd | 14 +- rgr-1.1.11/rgr/man/gx.cnpplts.Rd | 2 rgr-1.1.11/rgr/man/gx.ecdf.Rd | 2 rgr-1.1.11/rgr/man/gx.hist.Rd | 8 - rgr-1.1.11/rgr/man/gx.md.display.Rd | 29 ++-- rgr-1.1.11/rgr/man/gx.md.print.Rd | 19 +- rgr-1.1.11/rgr/man/gx.mvalloc.Rd | 4 rgr-1.1.11/rgr/man/gx.mvalloc.closed.Rd | 3 rgr-1.1.11/rgr/man/gx.mvalloc.print.Rd | 13 + rgr-1.1.11/rgr/man/gx.ngr.ltdl.Rd |only rgr-1.1.11/rgr/man/gx.ngr.skew.Rd |only rgr-1.1.11/rgr/man/gx.ngr.stats.Rd |only rgr-1.1.11/rgr/man/gx.ngr.summary.Rd |only rgr-1.1.11/rgr/man/gx.rma.Rd | 55 ++++--- rgr-1.1.11/rgr/man/gx.rqpca.plot.Rd | 25 ++- rgr-1.1.11/rgr/man/gx.rqpca.print.Rd | 19 +- rgr-1.1.11/rgr/man/gx.rqpca.save.Rd |only rgr-1.1.11/rgr/man/gx.scores.Rd | 14 +- rgr-1.1.11/rgr/man/gx.summary.Rd | 6 rgr-1.1.11/rgr/man/inset.Rd | 17 +- rgr-1.1.11/rgr/man/inset.exporter.Rd | 41 +++-- rgr-1.1.11/rgr/man/map.eda7.Rd | 5 rgr-1.1.11/rgr/man/map.eda8.Rd | 5 rgr-1.1.11/rgr/man/map.z.Rd | 24 +-- rgr-1.1.11/rgr/man/rgr_1.1.11-package.Rd |only rgr-1.1.11/rgr/man/shape.Rd | 10 - rgr-1.1.11/rgr/man/tbplots.Rd | 2 rgr-1.1.11/rgr/man/tbplots.by.var.Rd | 2 rgr-1.1.11/rgr/man/xyplot.eda7.Rd | 5 rgr-1.1.11/rgr/man/xyplot.eda8.Rd | 5 rgr-1.1.11/rgr/man/xyplot.z.Rd | 20 +- 86 files changed, 584 insertions(+), 482 deletions(-)
Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Description: Provides efficient tools for population genomics data analysis,
able to process individual loci, large sets of loci, or whole genomes. PopGenome not only
implements a wide range of population genetics statistics, but also facilitates the easy
implementation of new algorithms by other researchers. PopGenome is optimized for speed via
the seamless integration of C code.
Author: Bastian Pfeifer [aut, cre], Ulrich Wittelsbuerger [ctb], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Bastian Pfeifer <Bastian.Pfeifer@uni-duesseldorf.de>
Diff between PopGenome versions 2.1.5 dated 2015-05-01 and 2.1.6 dated 2015-05-04
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 2 +- R/get.feature.names.R | 2 +- R/split_data_into_GFF_attributes.R | 6 ++++-- inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary inst/doc/Integration_of_new_Methods.pdf |binary inst/doc/Whole_genome_analyses_using_VCF_files.pdf | 10 +++++----- 8 files changed, 21 insertions(+), 19 deletions(-)
Title: Accurate Numerical Derivatives
Description: Methods for calculating (usually) accurate
numerical first and second order derivatives. Accurate calculations
are done using Richardson's extrapolation or, when applicable, a complex
step derivative is available. A simple difference
method is also provided. Simple difference is (usually) less accurate
but is much quicker than Richardson's extrapolation and provides a
useful cross-check.
Methods are provided for real scalar and vector valued functions.
Author: Paul Gilbert and Ravi Varadhan
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between numDeriv versions 2012.9-1 dated 2012-10-14 and 2014.2-1 dated 2015-05-04
DESCRIPTION | 33 +++--- MD5 | 21 ++-- NEWS | 16 +++ R/num2Deriv.R |only R/numDeriv.R | 263 +++++++++++++++++------------------------------------ build |only inst/doc/Guide.pdf |binary man/genD.Rd | 15 ++- man/grad.Rd | 56 +++++++++-- man/hessian.Rd | 17 ++- man/jacobian.Rd | 19 +-- po |only tests/oneSided.R |only 13 files changed, 213 insertions(+), 227 deletions(-)
Title: Regularization Paths for SCAD and MCP Penalized Regression
Models
Description: Efficient algorithms for fitting regularization paths for linear or logistic regression models penalized by MCP or SCAD, with optional additional L2 penalty.
Author: Patrick Breheny [aut,cre], Sangin Lee [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between ncvreg versions 3.3-0 dated 2015-03-18 and 3.4-0 dated 2015-05-04
ncvreg-3.3-0/ncvreg/inst/tests/par.R |only ncvreg-3.3-0/ncvreg/tests |only ncvreg-3.4-0/ncvreg/DESCRIPTION | 8 +- ncvreg-3.4-0/ncvreg/MD5 | 48 +++++++++-------- ncvreg-3.4-0/ncvreg/NAMESPACE | 7 +- ncvreg-3.4-0/ncvreg/NEWS | 14 ++++ ncvreg-3.4-0/ncvreg/R/cv.ncvreg.R | 2 ncvreg-3.4-0/ncvreg/R/ncvreg.R | 4 + ncvreg-3.4-0/ncvreg/R/ncvsurv.R | 11 +++ ncvreg-3.4-0/ncvreg/R/perm.ncvreg.R | 76 +++++++++++++++++---------- ncvreg-3.4-0/ncvreg/R/permres.ncvreg.R |only ncvreg-3.4-0/ncvreg/R/plot.ncvsurv.func.R |only ncvreg-3.4-0/ncvreg/R/predict.R | 10 +-- ncvreg-3.4-0/ncvreg/R/predict.surv.R | 59 ++++++++++++++++++-- ncvreg-3.4-0/ncvreg/README.md |only ncvreg-3.4-0/ncvreg/inst/tests/fir.R |only ncvreg-3.4-0/ncvreg/inst/tests/parallel.R |only ncvreg-3.4-0/ncvreg/inst/tests/surv.R | 60 +++++++++++++++++++++ ncvreg-3.4-0/ncvreg/inst/tests/test.R | 67 ++++++++++------------- ncvreg-3.4-0/ncvreg/man/cv.ncvreg.Rd | 3 - ncvreg-3.4-0/ncvreg/man/fir.Rd | 2 ncvreg-3.4-0/ncvreg/man/ncvreg.Rd | 6 +- ncvreg-3.4-0/ncvreg/man/ncvsurv.Rd | 37 +++++++++---- ncvreg-3.4-0/ncvreg/man/perm.ncvreg.Rd | 33 +++++++---- ncvreg-3.4-0/ncvreg/man/permres.Rd |only ncvreg-3.4-0/ncvreg/man/plot.fir.Rd | 2 ncvreg-3.4-0/ncvreg/man/plot.ncvsurv.func.Rd |only ncvreg-3.4-0/ncvreg/man/predict.Rd | 6 +- ncvreg-3.4-0/ncvreg/man/predict.ncvsurv.Rd |only ncvreg-3.4-0/ncvreg/src/cox-dh.c | 9 +-- 30 files changed, 321 insertions(+), 143 deletions(-)
Title: Ordination and Multivariate Analysis for Ecology
Description: A variety of ordination and community analyses
useful in analysis of data sets in community ecology.
Includes many of the common ordination methods, with
graphical routines to facilitate their interpretation,
as well as several novel analyses.
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Diff between labdsv versions 1.6-1 dated 2013-09-13 and 1.7-0 dated 2015-05-04
labdsv-1.6-1/labdsv/R/indspc.R |only labdsv-1.6-1/labdsv/R/rgl.nmds.R |only labdsv-1.6-1/labdsv/R/rgl.pco.R |only labdsv-1.6-1/labdsv/man/indspc.Rd |only labdsv-1.7-0/labdsv/DESCRIPTION | 11 labdsv-1.7-0/labdsv/INDEX | 24 - labdsv-1.7-0/labdsv/MD5 | 151 +++---- labdsv-1.7-0/labdsv/NAMESPACE | 61 ++ labdsv-1.7-0/labdsv/R/abuocc.R | 76 ++- labdsv-1.7-0/labdsv/R/clustify.R |only labdsv-1.7-0/labdsv/R/compspec.R |only labdsv-1.7-0/labdsv/R/concov.R | 36 - labdsv-1.7-0/labdsv/R/const.R | 65 +-- labdsv-1.7-0/labdsv/R/dematrify.R | 25 - labdsv-1.7-0/labdsv/R/dga.R | 5 labdsv-1.7-0/labdsv/R/disana.R | 50 +- labdsv-1.7-0/labdsv/R/drop.R | 24 - labdsv-1.7-0/labdsv/R/dsvdis.R | 2 labdsv-1.7-0/labdsv/R/envrtest.R | 5 labdsv-1.7-0/labdsv/R/euclidify.R | 3 labdsv-1.7-0/labdsv/R/homoteneity.R | 14 labdsv-1.7-0/labdsv/R/importance.R | 75 +-- labdsv-1.7-0/labdsv/R/indval.R | 41 -- labdsv-1.7-0/labdsv/R/isamic.R | 10 labdsv-1.7-0/labdsv/R/metrify.R | 3 labdsv-1.7-0/labdsv/R/nmds.R | 71 ++- labdsv-1.7-0/labdsv/R/ordcomp.R | 14 labdsv-1.7-0/labdsv/R/orddist.R | 6 labdsv-1.7-0/labdsv/R/ordpart.R | 18 labdsv-1.7-0/labdsv/R/ordtaxa.R | 33 - labdsv-1.7-0/labdsv/R/ordtest.R | 24 - labdsv-1.7-0/labdsv/R/pca.R | 27 - labdsv-1.7-0/labdsv/R/pco.R | 79 ++- labdsv-1.7-0/labdsv/R/raretaxa.R | 38 + labdsv-1.7-0/labdsv/R/reconcile.R | 11 labdsv-1.7-0/labdsv/R/rnddist.R | 8 labdsv-1.7-0/labdsv/R/rndtaxa.R | 4 labdsv-1.7-0/labdsv/R/subset_dist.R |only labdsv-1.7-0/labdsv/R/thull.R | 9 labdsv-1.7-0/labdsv/R/vegtrans.R | 24 - labdsv-1.7-0/labdsv/data/brycesite.rda |binary labdsv-1.7-0/labdsv/data/bryceveg.rda |binary labdsv-1.7-0/labdsv/inst/ChangeLog | 674 +++++++++++++++++---------------- labdsv-1.7-0/labdsv/man/abuocc.Rd | 16 labdsv-1.7-0/labdsv/man/brycesite.Rd | 8 labdsv-1.7-0/labdsv/man/clustify.Rd |only labdsv-1.7-0/labdsv/man/compspec.Rd |only labdsv-1.7-0/labdsv/man/concov.Rd | 7 labdsv-1.7-0/labdsv/man/const.Rd | 8 labdsv-1.7-0/labdsv/man/dematrify.Rd | 2 labdsv-1.7-0/labdsv/man/dga.Rd | 2 labdsv-1.7-0/labdsv/man/disana.Rd | 7 labdsv-1.7-0/labdsv/man/dropplt.Rd | 9 labdsv-1.7-0/labdsv/man/dropspc.Rd | 5 labdsv-1.7-0/labdsv/man/dsvdis.Rd | 12 labdsv-1.7-0/labdsv/man/envrtest.Rd | 2 labdsv-1.7-0/labdsv/man/euclidify.Rd | 2 labdsv-1.7-0/labdsv/man/homoteneity.Rd | 2 labdsv-1.7-0/labdsv/man/importance.Rd | 8 labdsv-1.7-0/labdsv/man/indval.Rd | 2 labdsv-1.7-0/labdsv/man/isamic.Rd | 2 labdsv-1.7-0/labdsv/man/matrify.Rd | 2 labdsv-1.7-0/labdsv/man/metrify.Rd | 4 labdsv-1.7-0/labdsv/man/nmds.Rd | 5 labdsv-1.7-0/labdsv/man/ordcomp.Rd | 2 labdsv-1.7-0/labdsv/man/orddist.Rd | 4 labdsv-1.7-0/labdsv/man/ordpart.Rd | 2 labdsv-1.7-0/labdsv/man/ordtest.Rd | 6 labdsv-1.7-0/labdsv/man/pca.Rd | 11 labdsv-1.7-0/labdsv/man/pco.Rd | 2 labdsv-1.7-0/labdsv/man/plot.nmds.Rd | 13 labdsv-1.7-0/labdsv/man/plot.pca.Rd | 2 labdsv-1.7-0/labdsv/man/plot.pco.Rd | 13 labdsv-1.7-0/labdsv/man/raretaxa.Rd | 5 labdsv-1.7-0/labdsv/man/reconcile.Rd | 1 labdsv-1.7-0/labdsv/man/rnddist.Rd | 2 labdsv-1.7-0/labdsv/man/rndtaxa.Rd | 2 labdsv-1.7-0/labdsv/man/spcdisc.Rd | 2 labdsv-1.7-0/labdsv/man/thull.Rd | 7 labdsv-1.7-0/labdsv/man/vegtab.Rd | 2 labdsv-1.7-0/labdsv/man/vegtrans.Rd | 2 81 files changed, 1042 insertions(+), 862 deletions(-)
Title: Invariant Causal Prediction
Description: Confidence intervals for causal effects, using data collected in different experimental or environmental conditions. Hidden variables can be included in the model with a more experimental version.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between InvariantCausalPrediction versions 0.3-1 dated 2015-04-14 and 0.3-2 dated 2015-05-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/ICP.R | 6 ++++-- R/hiddenICE.R | 30 +++++++++++++++++++----------- R/hiddenICP.R | 2 ++ man/ICP.Rd | 4 +++- man/hiddenICE.Rd | 18 +++++++++++++----- man/hiddenICP.Rd | 4 +++- 8 files changed, 55 insertions(+), 31 deletions(-)
More information about InvariantCausalPrediction at CRAN
Permanent link
Title: Analyze Dose-Volume Histograms and Check Constraints
Description: Functionality for analyzing dose-volume histograms (DVH)
in radiation oncology: Read DVH text files,
calculate DVH metrics, gEUD, BED, EQD2, NTCP, TCP, show DVH
diagrams, check and visualize quality assurance constraints
for the DVH. Includes web-based graphical user interface.
Author: Daniel Wollschlaeger [aut, cre],
Heiko Karle [aut],
Heinz Schmidberger [ctb]
Maintainer: Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
Diff between DVHmetrics versions 0.2 dated 2015-04-08 and 0.3 dated 2015-05-04
DESCRIPTION | 12 +- MD5 | 73 ++++++------- NAMESPACE | 12 ++ R/getBED.R | 176 ++++++------------------------- R/getDMEAN.R | 4 R/getEQD2.R |only R/getEUD.R | 35 +++--- R/getIsoEffD.R |only R/getMetric.R | 25 ++-- R/getNTCP.R | 33 +++-- R/parseCadplan.R | 2 R/parseConstraint.R |only R/parseEclipse.R | 4 R/parseMasterplan.R | 2 R/parseMetric.R | 8 - R/parsePinnacleDVH.R | 2 R/print.R | 4 R/readConstraint.R | 255 ---------------------------------------------- R/runGUI.R | 7 + R/showDVH.R | 4 R/unix/parseDVH.R | 3 data/dataMZ.rda |binary inst/ChangeLog | 12 +- inst/DVHshiny/server.R | 22 +-- inst/DVHshiny/ui.R | 4 inst/doc/DVHmetrics.R | 11 + inst/doc/DVHmetrics.Rnw | 43 +++++-- inst/doc/DVHmetrics.pdf |binary inst/doc/DVHshiny.pdf |binary man/DVHmetrics-package.Rd | 8 - man/getBED.Rd | 28 +++-- man/getEQD2.Rd | 30 ++++- man/getEUD.Rd | 14 +- man/getIsoEffD.Rd | 48 +++++--- man/getMetric.Rd | 2 man/getNTCP.Rd | 4 man/getTCP.Rd | 4 vignettes/DVHmetrics.Rnw | 43 +++++-- vignettes/lit.bib | 2 39 files changed, 357 insertions(+), 579 deletions(-)
Title: Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Description: Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between wgaim versions 1.4-6 dated 2015-02-03 and 1.4-7 dated 2015-05-04
wgaim-1.4-6/wgaim/R/wgaim8.R |only wgaim-1.4-7/wgaim/DESCRIPTION | 10 +++++----- wgaim-1.4-7/wgaim/MD5 | 12 ++++++------ wgaim-1.4-7/wgaim/R/wgaim9.R |only wgaim-1.4-7/wgaim/inst/NEWS.Rd | 7 +++++++ wgaim-1.4-7/wgaim/inst/doc/wgaim.pdf |binary wgaim-1.4-7/wgaim/man/cross2int.Rd | 9 +++++---- wgaim-1.4-7/wgaim/man/wgaim.asreml.Rd | 5 ++--- 8 files changed, 25 insertions(+), 18 deletions(-)
Title: Stable Distribution Functions
Description: Density, Probability and Quantile functions, and random number
generation for (skew) stable distributions, using the parametrizations of
Nolan.
Author: Diethelm Wuertz, Martin Maechler and Rmetrics core team members.
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between stabledist versions 0.6-6 dated 2013-06-12 and 0.7-0 dated 2015-05-04
stabledist-0.6-6/stabledist/Done |only stabledist-0.7-0/stabledist/ChangeLog | 7 ++++++ stabledist-0.7-0/stabledist/DESCRIPTION | 19 ++++++++-------- stabledist-0.7-0/stabledist/MD5 | 15 ++++++------- stabledist-0.7-0/stabledist/R/dpqr-stable.R | 16 ++++++++++---- stabledist-0.7-0/stabledist/R/utils.R | 8 +++++-- stabledist-0.7-0/stabledist/TODO | 28 +++++++++++++++++++++++++ stabledist-0.7-0/stabledist/man/dist-stable.Rd | 5 ++-- stabledist-0.7-0/stabledist/tests/pstab-ex.R | 6 +++++ 9 files changed, 78 insertions(+), 26 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
In addition, various risk estimation methods are included.
Note that the package 'sdcMicroGUI' includes a graphical user interface for various methods
in this package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 4.4.0 dated 2014-07-18 and 4.5.0 dated 2015-05-04
DESCRIPTION | 14 +++++++------- MD5 | 40 ++++++++++++++++++++-------------------- R/GUIfunctions.R | 15 ++++++++++++--- R/LocalRecProg.R | 2 +- R/aux_functions.r | 2 +- R/methods.r | 4 ++-- R/microaggregation.R | 2 +- R/plot.localSuppression.R | 4 ++-- R/pram.R | 2 +- R/printFunctions.R | 10 +++++----- R/swappNum.R | 2 +- R/valTable.R | 2 +- build/vignette.rds |binary inst/doc/sdc_guidelines.pdf |binary man/dRisk.Rd | 2 +- man/dUtility.Rd | 2 +- man/dataGen.Rd | 2 +- man/groupVars-methods.Rd | 17 +++++++++++------ man/swappNum-deprecated.Rd | 1 - man/swappNum.Rd | 1 - tests/reporting_test.R | 2 +- 21 files changed, 69 insertions(+), 57 deletions(-)
Title: Prediction of Fish Movement Parameters
Description: Functions to predict fish movement parameters plotting leptokurtic fish dispersal kernels (see Radinger and Wolter, 2014: Patterns and predictors of fish dispersal in rivers. Fish and Fisheries. 15:456-473.)
Author: Johannes Radinger
Maintainer: Johannes Radinger <jradinger@igb-berlin.de>
Diff between fishmove versions 0.3-1 dated 2015-03-24 and 0.3-2 dated 2015-05-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/fishmove.R | 2 +- man/fishmove-package.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: The Bee Swarm Plot, an Alternative to Stripchart
Description: The bee swarm plot is a one-dimensional scatter plot like "stripchart", but with closely-packed, non-overlapping points.
Author: Aron Eklund
Maintainer: Aron Eklund <eklund+beeswarm@cbs.dtu.dk>
Diff between beeswarm versions 0.1.6 dated 2013-09-20 and 0.2.0 dated 2015-05-04
DESCRIPTION | 11 ++-- MD5 | 12 ++-- NEWS | 17 ++++++ R/beeswarm.R | 143 +++++++++++++++++++++++++++++++++++--------------------- R/bxplot.R | 3 - man/beeswarm.Rd | 25 +++++++++ man/swarmx.Rd | 18 ++++++- 7 files changed, 159 insertions(+), 70 deletions(-)
Title: Variance Dispersion Graphs and Fraction of Design Space Plots
Diff between vdg versions 1.0.1 dated 2015-02-13 and 1.1 dated 2015-05-04
Description: Facilities for constructing variance dispersion graphs, fraction-of-design-space plots
and similar graphics for exploring the properties of experimental designs. The design region is
explored via random sampling, which allows for more flexibility than traditional variance
dispersion graphs. A formula interface is leveraged to provide access to complex model
formulae. Graphics can be constructed simultaneously for multiple experimental designs and/or
multiple model formulae. Instead of using pointwise optimization to find the minimum and
maximum scaled prediction variance curves, which can be inaccurate and time consuming, this
package uses quantile regression as an alternative.
Author: Pieter Schoonees [aut, cre, cph]
Maintainer: Pieter Schoonees
DESCRIPTION | 15 ++---
MD5 | 52 ++++++++++--------
NAMESPACE | 4 +
R/plot.spv.R | 119 +++++++++++++++++++++++++-----------------
R/plot.spvforlist.R | 104 +++++++++++++++++++++----------------
R/plot.spvlist.R | 133 +++++++++++++++++++++++++++---------------------
R/plot.spvlistforlist.R | 107 +++++++++++++++++++++-----------------
R/sampler.R | 31 +++++++++--
R/spv.R | 3 -
R/spv.data.frame.R | 37 +++++++------
R/spv.list.R | 48 ++++++++++-------
R/spv.matrix.R | 37 +++++++------
R/stdrange.R | 3 -
R/vdg-package.R | 27 +++++++++
build |only
inst/doc |only
man/GJ54.Rd | 2
man/LHS.Rd | 2
man/meanspv.Rd | 2
man/plot.spv.Rd | 70 ++++++++++++++-----------
man/print.spv.Rd | 2
man/runif_sphere.Rd | 2
man/sampler.Rd | 26 +++++++--
man/spv.Rd | 20 ++++---
man/stdrange.Rd | 4 -
man/vdg-package.Rd | 31 ++++++++++-
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27 files changed, 539 insertions(+), 342 deletions(-)
Title: Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Diff between simPH versions 1.3 dated 2015-02-11 and 1.3.1 dated 2015-05-04
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud
DESCRIPTION | 12 +++---
MD5 | 81 +++++++++++++++++++++----------------------
NAMESPACE | 2 -
NEWS | 10 ++++-
R/SurvExpand.R | 4 ++
R/coxsimInteract.R | 7 +++
R/coxsimLinear.R | 6 ++-
R/coxsimPoly.R | 6 ++-
R/coxsimSpline.R | 6 ++-
R/coxsimtvc.R | 6 ++-
R/simGG.R | 4 ++
R/simGG.siminteract.R | 7 +++
R/simGG.simlinear.R | 7 +++
R/simGG.simpoly.R | 4 ++
R/simGG.simspline.R | 4 ++
R/simGG.simtvc.R | 6 ++-
R/simPH.R | 79 ++++++++++++++++++++++-------------------
README.md | 9 +++-
build/vignette.rds |binary
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man/CarpenterFdaData.Rd | 2 -
man/GolubEUPData.Rd | 2 -
man/MinMaxLines.Rd | 2 -
man/SurvExpand.Rd | 7 +++
man/as.data.frame.coxsim.Rd | 2 -
man/coxsimInteract.Rd | 9 +++-
man/coxsimLinear.Rd | 6 ++-
man/coxsimPoly.Rd | 6 ++-
man/coxsimSpline.Rd | 6 ++-
man/coxsimtvc.Rd | 6 ++-
man/ggfitStrata.Rd | 2 -
man/setXl.Rd | 2 -
man/simGG.Rd | 7 +++
man/simGG.siminteract.Rd | 6 ++-
man/simGG.simlinear.Rd | 6 ++-
man/simGG.simpoly.Rd | 7 +++
man/simGG.simspline.Rd | 7 +++
man/simGG.simtvc.Rd | 6 ++-
man/simPH.Rd | 7 +++
man/tvc.Rd | 2 -
vignettes/HRBibliography.bib | 29 ++++++++++-----
vignettes/simPH-overview.Rnw | 22 ++++++-----
42 files changed, 276 insertions(+), 135 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Diff between s20x versions 3.1-15 dated 2015-03-27 and 3.1-16 dated 2015-05-04
Description: A set of functions used in teaching STATS 201/208 Data Analysis at the University of Auckland. The functions are designed to make parts of R more accessible to a large undergraduate population who are mostly not statistics majors.
Author: Andrew Balemi, Dineika Chandra, James Curran, Brant Deppa, Mike Forster, Brendan McArdle, Chris Wild
Maintainer: James Curran
s20x-3.1-15/s20x/data/airpass.df.txt |only
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s20x-3.1-16/s20x/DESCRIPTION | 8
s20x-3.1-16/s20x/LICENSE | 678 +++++-----
s20x-3.1-16/s20x/MD5 | 366 ++---
s20x-3.1-16/s20x/NAMESPACE | 96 -
s20x-3.1-16/s20x/R/autocor.plot.R | 20
s20x-3.1-16/s20x/R/boxqq.r | 106 -
s20x-3.1-16/s20x/R/ciReg.R | 48
s20x-3.1-16/s20x/R/cooks20x.R | 22
s20x-3.1-16/s20x/R/crossFactors.R | 56
s20x-3.1-16/s20x/R/crosstabs.R | 98 -
s20x-3.1-16/s20x/R/eovcheck.R | 290 ++--
s20x-3.1-16/s20x/R/estimateContrasts.R | 18
s20x-3.1-16/s20x/R/estimateContrasts1.R | 90 -
s20x-3.1-16/s20x/R/estimateContrasts2.R | 104 -
s20x-3.1-16/s20x/R/freq1way.r | 230 +--
s20x-3.1-16/s20x/R/getVersion.R | 6
s20x-3.1-16/s20x/R/interactionPlots.R | 306 ++--
s20x-3.1-16/s20x/R/layout20x.R | 8
s20x-3.1-16/s20x/R/levene.test.R | 96 -
s20x-3.1-16/s20x/R/multipleComp.R | 58
s20x-3.1-16/s20x/R/normcheck.R | 134 -
s20x-3.1-16/s20x/R/onewayPlot.R | 466 +++---
s20x-3.1-16/s20x/R/pairs20x.R | 54
s20x-3.1-16/s20x/R/predict20x.R | 101 -
s20x-3.1-16/s20x/R/predictCount.R |only
s20x-3.1-16/s20x/R/propslsd.new.R | 112 -
s20x-3.1-16/s20x/R/residPlot.R | 84 -
s20x-3.1-16/s20x/R/rowdistr.r | 462 +++---
s20x-3.1-16/s20x/R/rr.r | 12
s20x-3.1-16/s20x/R/skewness.r | 6
s20x-3.1-16/s20x/R/stripqq.r | 106 -
s20x-3.1-16/s20x/R/summary1way.R | 140 --
s20x-3.1-16/s20x/R/summary2way.R | 558 ++++----
s20x-3.1-16/s20x/R/summaryStats.R | 174 +-
s20x-3.1-16/s20x/R/trendscatter.R | 122 -
s20x-3.1-16/s20x/README.md | 8
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s20x-3.1-16/s20x/demo/00Index | 88 -
s20x-3.1-16/s20x/demo/cs1.r | 16
s20x-3.1-16/s20x/demo/cs10.r | 14
s20x-3.1-16/s20x/demo/cs11.r | 16
s20x-3.1-16/s20x/demo/cs12.r | 26
s20x-3.1-16/s20x/demo/cs13.r | 40
s20x-3.1-16/s20x/demo/cs14.r | 24
s20x-3.1-16/s20x/demo/cs15.r | 30
s20x-3.1-16/s20x/demo/cs16.r | 44
s20x-3.1-16/s20x/demo/cs17.r | 32
s20x-3.1-16/s20x/demo/cs18.r | 24
s20x-3.1-16/s20x/demo/cs19.r | 30
s20x-3.1-16/s20x/demo/cs2.r | 14
s20x-3.1-16/s20x/demo/cs20.r | 36
s20x-3.1-16/s20x/demo/cs21.r | 42
s20x-3.1-16/s20x/demo/cs22.r | 22
s20x-3.1-16/s20x/demo/cs23.r | 66
s20x-3.1-16/s20x/demo/cs24.r | 36
s20x-3.1-16/s20x/demo/cs25.r | 90 -
s20x-3.1-16/s20x/demo/cs26.r | 38
s20x-3.1-16/s20x/demo/cs27.r | 36
s20x-3.1-16/s20x/demo/cs28.r | 18
s20x-3.1-16/s20x/demo/cs29.r | 22
s20x-3.1-16/s20x/demo/cs3.r | 10
s20x-3.1-16/s20x/demo/cs30.r | 20
s20x-3.1-16/s20x/demo/cs31.r | 18
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s20x-3.1-16/s20x/demo/cs33.r | 20
s20x-3.1-16/s20x/demo/cs34.r | 28
s20x-3.1-16/s20x/demo/cs35.r | 16
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s20x-3.1-16/s20x/demo/cs38.r | 30
s20x-3.1-16/s20x/demo/cs39.r | 30
s20x-3.1-16/s20x/demo/cs4.r | 10
s20x-3.1-16/s20x/demo/cs40.r | 20
s20x-3.1-16/s20x/demo/cs41.r | 24
s20x-3.1-16/s20x/demo/cs42.r | 22
s20x-3.1-16/s20x/demo/cs43.r | 20
s20x-3.1-16/s20x/demo/cs5.r | 12
s20x-3.1-16/s20x/demo/cs6.r | 18
s20x-3.1-16/s20x/demo/cs7.r | 24
s20x-3.1-16/s20x/demo/cs8.r | 34
s20x-3.1-16/s20x/demo/cs9.r | 14
s20x-3.1-16/s20x/inst/rmarkdown/templates/STATS20x_Assignment/skeleton/skeleton.Rmd | 46
s20x-3.1-16/s20x/inst/rmarkdown/templates/STATS20x_Assignment/template.yaml | 6
s20x-3.1-16/s20x/man/airpass.df.Rd | 26
s20x-3.1-16/s20x/man/apples.df.Rd | 72 -
s20x-3.1-16/s20x/man/arousal.df.Rd | 36
s20x-3.1-16/s20x/man/autocor.plot.Rd | 42
s20x-3.1-16/s20x/man/beer.df.Rd | 26
s20x-3.1-16/s20x/man/body.df.Rd | 46
s20x-3.1-16/s20x/man/books.df.Rd | 54
s20x-3.1-16/s20x/man/boxqq.Rd | 60
s20x-3.1-16/s20x/man/bursary.df.Rd | 34
s20x-3.1-16/s20x/man/butterfat.df.Rd | 54
s20x-3.1-16/s20x/man/camplake.df.Rd | 36
s20x-3.1-16/s20x/man/chalk.df.Rd | 40
s20x-3.1-16/s20x/man/ciReg.Rd | 52
s20x-3.1-16/s20x/man/computer.df.Rd | 34
s20x-3.1-16/s20x/man/cooks20x.Rd | 42
s20x-3.1-16/s20x/man/course.df.Rd | 60
s20x-3.1-16/s20x/man/course2way.df.Rd | 36
s20x-3.1-16/s20x/man/crossFactors.Rd | 86 -
s20x-3.1-16/s20x/man/crosstabs.Rd | 54
s20x-3.1-16/s20x/man/diamonds.df.Rd | 34
s20x-3.1-16/s20x/man/eovcheck.Rd | 154 +-
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s20x-3.1-16/s20x/man/fruitfly.df.Rd | 50
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s20x-3.1-16/s20x/man/incomes.df.Rd | 20
s20x-3.1-16/s20x/man/interactionPlots.Rd | 156 +-
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s20x-3.1-16/s20x/man/larain.df.Rd | 26
s20x-3.1-16/s20x/man/layout20x.Rd | 46
s20x-3.1-16/s20x/man/levene.test.Rd | 66
s20x-3.1-16/s20x/man/mazda.df.Rd | 34
s20x-3.1-16/s20x/man/mening.df.Rd | 26
s20x-3.1-16/s20x/man/mergers.df.Rd | 20
s20x-3.1-16/s20x/man/mozart.df.Rd | 36
s20x-3.1-16/s20x/man/multipleComp.Rd | 46
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s20x-3.1-16/s20x/man/onewayPlot.Rd | 156 +-
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s20x-3.1-16/s20x/man/pairs20x.Rd | 56
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s20x-3.1-16/s20x/man/skewness.Rd | 40
s20x-3.1-16/s20x/man/skulls.df.Rd | 48
s20x-3.1-16/s20x/man/soyabean.df.Rd | 38
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s20x-3.1-16/s20x/man/teach.df.Rd | 36
s20x-3.1-16/s20x/man/technitron.df.Rd | 46
s20x-3.1-16/s20x/man/thyroid.df.Rd | 36
s20x-3.1-16/s20x/man/toothpaste.df.Rd | 34
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s20x-3.1-16/s20x/man/zoo.df.Rd | 42
222 files changed, 5055 insertions(+), 5062 deletions(-)
Title: Command-Line Interface Specification Language
Diff between docopt versions 0.4.2 dated 2015-01-05 and 0.4.3.3 dated 2015-05-04
Description: Define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge (edwindjonge@gmail.com)
Maintainer: Edwin de Jonge
DESCRIPTION | 12 ++++++------
MD5 | 25 +++++++++++++------------
NAMESPACE | 2 +-
NEWS | 3 +++
R/Tokens.R | 26 ++++++++++++++++++--------
R/docopt.R | 4 ++--
R/parse.R | 2 +-
man/as.character-Pattern-method.Rd | 2 +-
man/as.character-Tokens-method.Rd | 2 +-
man/docopt-package.Rd | 2 +-
man/docopt.Rd | 2 +-
man/sub-Tokens-method.Rd | 2 +-
man/subset-Tokens-method.Rd | 2 +-
tests/testthat/test_issues.R |only
14 files changed, 50 insertions(+), 36 deletions(-)
Title: Linkage Map Construction using the MSTmap Algorithm
Diff between ASMap versions 0.4 dated 2015-04-13 and 0.4-1 dated 2015-05-04
Description: Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Author: Julian Taylor
Maintainer: Julian Taylor
ASMap-0.4-1/ASMap/DESCRIPTION | 10 +++++-----
ASMap-0.4-1/ASMap/MD5 | 7 ++++---
ASMap-0.4-1/ASMap/R/mstmap10.R |only
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6 files changed, 9 insertions(+), 8 deletions(-)
Title: Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Diff between JMbayes versions 0.7-0 dated 2015-03-13 and 0.7-2 dated 2015-05-04
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos
DESCRIPTION | 8 +-
MD5 | 31 +++++----
R/ModelMats.R | 11 ++-
R/crLong.R |only
R/fitted.JMbayes.R | 12 +++
R/jointModelBayes.R | 24 ++++---
R/predict.JMbayes.R | 14 +++-
R/print.summary.JMbayes.R | 9 +-
R/summary.JMbayes.R | 6 +
R/survfitJM.JMbayes.R | 17 ++++-
demo/server.R | 144 ++++++++++++++++++++++++++++++++++++++++------
demo/ui.R | 35 ++++-------
inst/NEWS | 6 +
man/JMbayes.Rd | 4 -
man/jointModelBayes.Rd | 25 +++++++
man/predict.Rd | 8 +-
man/survfitJM.Rd | 5 +
17 files changed, 274 insertions(+), 85 deletions(-)
More information about clustering.sc.dp at CRAN
Permanent link
Title: Edit, Run and Evaluate APSIM Simulations Easily Using R
Diff between apsimr versions 0.1 dated 2014-06-12 and 1.0 dated 2015-05-04
Description: The Agricultural Production Systems sIMulator (APSIM) is a widely
used simulator of agricultural systems. This package includes
functions to create, edit and run APSIM simulations from R. It
also includes functions to visualize the results of an APSIM simulation
and perform sensitivity/uncertainty analysis of APSIM either via functions
in the sensitivity package or by novel emulator-based functions.
For more on APSIM including download instructions go to
\url{www.apsim.info}.
Author: Bryan Stanfill
Maintainer: Bryan Stanfill
DESCRIPTION | 25 ++++++++----
MD5 | 41 ++++++++++++++------
NAMESPACE | 13 ++++--
NEWS |only
R/editAPSIM.R | 102 +++++++++++++++++++++++++++++++++-----------------
R/emulateAPSIM.R |only
R/runAPSIM.R | 56 ++++++++++++++++-----------
R/sensitivityAPSIM.R |only
R/visualize.R | 16 ++++---
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man/apsimr-package.Rd | 17 ++++----
man/edit_apsim.Rd | 32 ++++++++++-----
man/edit_sim_file.Rd | 33 ++++++++++------
man/example_apsim.Rd | 23 +++++------
man/plot.apsim.Rd | 20 +++++----
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vignettes |only
22 files changed, 266 insertions(+), 145 deletions(-)
Title: Global Disaster Losses from the EMDAT Database Using R
Diff between emdatr versions 0.2 dated 2014-05-12 and 0.3 dated 2015-05-04
Description: The 'EMDAT' database provides information on human
and financial losses from more than 21,000 major natural global
disasters from 1900 to the present. This package provides the
entire data available from 'EMDAT' and also additional relevant
information such as historical national GDP and population.
Moreover, this package also provides functionality to extract
desired subsets of the 'EMDAT' data. The examples provided in
the vignette demonstrate the functionality provided by 'emdatr'.
The goal of 'emdatr' is to promote the use of 'EMDAT' data, bring
transparency to the data, shed light on the limitations of
the data, and make the analysis of the data easier using R.
Author: Gopi Goteti
Maintainer: Gopi Goteti
emdatr-0.2/emdatr/inst/doc/emdatr.R |only
emdatr-0.2/emdatr/inst/doc/emdatr.Rnw |only
emdatr-0.2/emdatr/inst/doc/emdatr.pdf |only
emdatr-0.2/emdatr/vignettes/emdatr.Rnw |only
emdatr-0.3/emdatr/DESCRIPTION | 40 +++++------
emdatr-0.3/emdatr/LICENSE |only
emdatr-0.3/emdatr/MD5 | 33 ++++-----
emdatr-0.3/emdatr/NAMESPACE | 2
emdatr-0.3/emdatr/NEWS | 16 ++++
emdatr-0.3/emdatr/R/data.r | 74 ++++++++++----------
emdatr-0.3/emdatr/R/extract_emdat.r | 13 +--
emdatr-0.3/emdatr/build/vignette.rds |binary
emdatr-0.3/emdatr/data/emdat_sample.rda |binary
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emdatr-0.3/emdatr/inst/doc/emdatr_demo.Rmd |only
emdatr-0.3/emdatr/inst/doc/emdatr_demo.html |only
emdatr-0.3/emdatr/man/emdat_sample.Rd | 100 +++++++++++++---------------
emdatr-0.3/emdatr/man/emdatr.Rd | 23 ++----
emdatr-0.3/emdatr/man/extract_emdat.Rd | 29 +++-----
emdatr-0.3/emdatr/man/usa_cpi.Rd | 22 +++---
emdatr-0.3/emdatr/vignettes/emdatr_demo.Rmd |only
22 files changed, 182 insertions(+), 170 deletions(-)