Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the book
'Numerical Methods and Optimization in Finance' by M.
Gilli, D. Maringer and E. Schumann. The package provides
implementations of several optimisation heuristics, such as
Differential Evolution, Genetic Algorithms and Threshold
Accepting. There are also functions for the valuation of
financial instruments, such as bonds and options, and
functions that help with stochastic simulations.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 0.34-1 dated 2015-02-03 and 0.34-2 dated 2015-05-06
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS | 6 ++++++ R/DEopt.R | 8 ++++---- R/PSopt.R | 2 +- build/vignette.rds |binary inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/qTableEx.pdf |binary inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/unitTests/report.txt | 24 ++++++++++++------------ inst/unitTests/unitTestsDEopt.R | 19 +++++++++++++++++++ 16 files changed, 62 insertions(+), 37 deletions(-)
Title: R Tools for Helsinki Open Data
Description: Tools for accessing various open data sources in the Helsinki
region in Finland. Current data sources include
the Real Estate Department (district maps),
the Environmental Services Authority,
Service Map API,
Linked Events API and
Helsinki Region Infoshare statistics API.
Author: Juuso Parkkinen, Leo Lahti, Joona Lehtomaki
Maintainer: Juuso Parkkinen <louhos@googlegroups.com>
Diff between helsinki versions 0.9.24 dated 2014-12-22 and 0.9.27 dated 2015-05-06
helsinki-0.9.24/helsinki/inst/extras |only helsinki-0.9.24/helsinki/vignettes/figure |only helsinki-0.9.27/helsinki/DESCRIPTION | 10 - helsinki-0.9.27/helsinki/MD5 | 45 +--- helsinki-0.9.27/helsinki/NAMESPACE | 2 helsinki-0.9.27/helsinki/R/HKK.R | 2 helsinki-0.9.27/helsinki/R/HSY.R | 5 helsinki-0.9.27/helsinki/R/regional_stats.R | 8 helsinki-0.9.27/helsinki/R/services.R | 2 helsinki-0.9.27/helsinki/man/aluejakokartat.Rd | 3 helsinki-0.9.27/helsinki/man/get_hri_stats.Rd | 3 helsinki-0.9.27/helsinki/man/get_hsy.Rd | 3 helsinki-0.9.27/helsinki/man/get_linkedevents.Rd | 3 helsinki-0.9.27/helsinki/man/get_servicemap.Rd | 3 helsinki-0.9.27/helsinki/man/helsinki-package.Rd | 3 helsinki-0.9.27/helsinki/vignettes/helsinki_tutorial.Rmd | 12 - helsinki-0.9.27/helsinki/vignettes/helsinki_tutorial.html | 123 ++++--------- helsinki-0.9.27/helsinki/vignettes/helsinki_tutorial.md | 130 +++++--------- helsinki-0.9.27/helsinki/vignettes/todo-datasets.md | 4 19 files changed, 142 insertions(+), 219 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package allows for retrieval of five datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; and the International Tree Ring Data Bank. Additional data sources are in the works, including global DEM resources (ETOPO1, ETOPO5, ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky <bocinsky@gmail.com>
Dylan Beaudette <Dylan.Beaudette@ca.usda.gov>
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 1.0 dated 2015-02-13 and 1.1.0 dated 2015-05-06
DESCRIPTION | 18 ++-- MD5 | 75 +++++++++++--------- NAMESPACE | 36 ++++++++- R/GHCN_FUNCTIONS.R | 27 ++++--- R/ITRDB_FUNCTIONS.R |only R/NED_FUNCTIONS.R | 20 +++-- R/NHD_FUNCTIONS.R | 32 +++++--- R/SSURGO_FUNCTIONS.R | 150 ++++++++++++++++++++++++---------------- R/UTILITY_FUNCTIONS.R | 81 ++++++++++++++++++++- R/sysdata.rda |only README.md |only inst/FedDataTester.R | 44 ++++++++--- man/FedData-package.Rd | 17 +++- man/SPDFfromPolygon.Rd | 2 man/curlDownload.Rd |only man/downloadGHCNDailyStation.Rd | 2 man/downloadHUC4.Rd | 2 man/downloadITRDB.Rd |only man/downloadNEDTile.Rd | 2 man/downloadNHDSubregion.Rd | 7 + man/downloadSSURGOInventory.Rd | 2 man/downloadSSURGOStudyArea.Rd | 2 man/extractSSURGOData.Rd | 2 man/getGHCNDaily.Rd | 2 man/getGHCNDailyStation.Rd | 2 man/getGHCNInventory.Rd | 2 man/getHUC4.Rd | 2 man/getITRDB.Rd |only man/getNED.Rd | 2 man/getNEDTile.Rd | 2 man/getNHD.Rd | 7 + man/getNHDSubregion.Rd | 7 + man/getSSURGO.Rd | 7 + man/getSSURGOInventory.Rd | 2 man/getSSURGOStudyArea.Rd | 2 man/pkgTest.Rd | 2 man/polygonFromExtent.Rd | 2 man/read.crn.Rd |only man/read.crn.data.Rd |only man/read.crn.metadata.Rd |only man/sequential.duplicated.Rd | 2 man/substrRight.Rd | 2 man/wgetDownload.Rd | 2 43 files changed, 392 insertions(+), 176 deletions(-)
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. There is an Excel workbook with examples of
calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin <excel.link.feedback@gmail.com>. To comply CRAN policy includes R source code from 'RDCOMClient' (http://www.omegahat.org/RDCOMClient) by Duncan Temple Lang <duncan@wald.ucdavis.edu>.
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.6 dated 2013-09-05 and 0.8.1 dated 2015-05-06
excel.link-0.6/excel.link/man/dimnames.excel.range.Rd |only excel.link-0.6/excel.link/man/xl.sheets.Rd |only excel.link-0.6/excel.link/man/xl.workbooks.Rd |only excel.link-0.8.1/excel.link/DESCRIPTION | 32 excel.link-0.8.1/excel.link/MD5 | 59 excel.link-0.8.1/excel.link/NAMESPACE | 142 +- excel.link-0.8.1/excel.link/NEWS | 42 excel.link-0.8.1/excel.link/R/0COMError.R |only excel.link-0.8.1/excel.link/R/0classes.R |only excel.link-0.8.1/excel.link/R/0com.R |only excel.link-0.8.1/excel.link/R/0zzz.R |only excel.link-0.8.1/excel.link/R/0zzzCOMLists.R |only excel.link-0.8.1/excel.link/R/0zzzdebug.R |only excel.link-0.8.1/excel.link/R/0zzzrunTime.R |only excel.link-0.8.1/excel.link/R/RDCOMClient.R |only excel.link-0.8.1/excel.link/R/current.graphics.R |only excel.link-0.8.1/excel.link/R/dimnames.excel.range.R |only excel.link-0.8.1/excel.link/R/excel.link.R | 1267 ------------------ excel.link-0.8.1/excel.link/R/utils.R |only excel.link-0.8.1/excel.link/R/xl.R |only excel.link-0.8.1/excel.link/R/xl.connect.table.R |only excel.link-0.8.1/excel.link/R/xl.get.excel.R |only excel.link-0.8.1/excel.link/R/xl.read.file.R |only excel.link-0.8.1/excel.link/R/xl.sheet.add.R |only excel.link-0.8.1/excel.link/R/xl.workbooks.R |only excel.link-0.8.1/excel.link/R/xl.write.R |only excel.link-0.8.1/excel.link/build |only excel.link-0.8.1/excel.link/inst |only excel.link-0.8.1/excel.link/man/RDCOMClient.Rd |only excel.link-0.8.1/excel.link/man/current.graphics.Rd | 58 excel.link-0.8.1/excel.link/man/excel.link.Rd |only excel.link-0.8.1/excel.link/man/xl.Rd | 127 + excel.link-0.8.1/excel.link/man/xl.connect.table.Rd | 231 +-- excel.link-0.8.1/excel.link/man/xl.get.excel.Rd | 37 excel.link-0.8.1/excel.link/man/xl.read.file.Rd | 112 - excel.link-0.8.1/excel.link/man/xl.sheet.add.Rd |only excel.link-0.8.1/excel.link/man/xl.workbook.add.Rd |only excel.link-0.8.1/excel.link/man/xl.write.Rd | 134 - excel.link-0.8.1/excel.link/src |only excel.link-0.8.1/excel.link/vignettes |only 40 files changed, 580 insertions(+), 1661 deletions(-)
Title: Robust Estimation for Compositional Data
Description: Methods for analysis of compositional data
including robust methods, imputation, methods to replace rounded zeros, (robust)
outlier detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data,
(robust) discriminant analysis for compositional data (Fisher rule), robust
regression with compositional predictors and (robust) Anderson-Darling
normality tests for compositional data as well as popular log-ratio
transformations (addLR, cenLR, isomLR, and their inverse transformations).
In addition, visualisation and diagnostic tools are implemented as well as
high and low-level plot functions for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ <templ@tuwien.ac.at>
Diff between robCompositions versions 1.9.0 dated 2014-08-18 and 1.9.1 dated 2015-05-06
DESCRIPTION | 19 +- MD5 | 106 ++++++------ NAMESPACE | 4 NEWS | 9 - R/aDist.R | 53 +++++- R/addLR.R | 42 ++++ R/addLRinv.R | 46 +++++ R/adjust.R | 63 +++++-- R/adtest.R | 52 +++++ R/adtestWrapper.R | 45 +++++ R/cenLR.R | 30 +++ R/cenLRinv.R | 29 +++ R/constSum.R | 20 ++ R/daFisher.R | 56 ++++++ R/gm.R | 16 + R/impAll.R | 32 +++ R/impCoda.R | 61 +++++++ R/impKNNa.R | 58 ++++++ R/impRZalr.R | 295 ++++++++++++++++++++-------------- R/impRZilr.R | 141 +++++++++++++++- R/isomLR.R | 52 +++++ R/isomLRinv.R | 29 +++ R/lmCoDaX.R | 35 ++++ R/missPatterns.R | 31 +++ R/orthbasis.R | 23 ++ R/outCoDa.R | 47 +++++ R/pcaCoDa.R | 45 +++++ R/pfa.R | 56 ++++++ R/plot.imp.R | 93 ++++++++++ R/plot.outCoDa.R | 26 ++ R/plot.pcaCoDa.R | 38 ++++ R/print.adtestWrapper.R | 21 ++ R/print.daFisher.R | 48 ++++- R/print.imp.R | 27 ++- R/print.outCoDa.R | 19 ++ R/print.pcaCoDa.R | 21 ++ R/rcrox-package.R |only R/robVariation.R | 54 ++++-- R/summary.adtestWrapper.R | 28 +++ R/summary.imp.R | 67 +++++-- R/ternaryDiag.R | 44 +++++ R/ternaryDiagAbline.R | 22 ++ R/ternaryDiagEllipse.R | 27 ++- R/ternaryDiagPoints.R | 23 ++ build/vignette.rds |binary inst/CITATION | 10 - inst/doc/imputation.pdf |binary inst/doc/robCompositions-overview.pdf |binary man/bootnComp.Rd |only man/impRZalr.Rd | 9 - man/impRZilr.Rd | 5 man/isomLR.Rd | 10 - man/print.imp.Rd | 2 tests/rz.R | 3 vignettes/natbib.sty |only vignettes/plainnat.bst |only 56 files changed, 1807 insertions(+), 285 deletions(-)
More information about robCompositions at CRAN
Permanent link
Title: Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl <tom.hengl@isric.org>
Diff between plotKML versions 0.5-1 dated 2015-04-23 and 0.5-2 dated 2015-05-06
DESCRIPTION | 26 +++++++++++++------------- MD5 | 12 ++++++------ NAMESPACE | 9 +++++---- R/kml.tiles.R | 8 -------- R/kml_compress.R | 4 ++-- inst/doc/jss1079.pdf |binary man/spMetadata.Rd | 4 ++-- 7 files changed, 28 insertions(+), 35 deletions(-)
Title: Apache OpenNLP Tools Interface
Description: An interface to the Apache OpenNLP tools (version 1.5.3).
The Apache OpenNLP library is a machine learning based toolkit for the
processing of natural language text written in Java.
It supports the most common NLP tasks, such as tokenization, sentence
segmentation, part-of-speech tagging, named entity extraction, chunking,
parsing, and coreference resolution.
See <http://opennlp.apache.org/> for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between openNLP versions 0.2-4 dated 2015-02-27 and 0.2-5 dated 2015-05-06
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/chunk.R | 2 +- R/ner.R | 2 +- R/parse.R | 6 ++++-- R/pos.R | 21 ++++++++++++++++++++- R/sentdetect.R | 2 +- R/tokenize.R | 2 +- 8 files changed, 40 insertions(+), 19 deletions(-)
Title: Natural Language Processing Utilities
Description: Utilities for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLPutils versions 0.0-1 dated 2014-06-15 and 0.0-2 dated 2015-05-06
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/diversity.R | 6 ++++-- R/formality.R | 6 ++++-- R/polarity.R | 6 ++++-- R/stem.R | 2 +- 6 files changed, 23 insertions(+), 17 deletions(-)
Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLP versions 0.1-6 dated 2015-01-24 and 0.1-7 dated 2015-05-06
NLP-0.1-6/NLP/R/tagged.R |only NLP-0.1-7/NLP/DESCRIPTION | 10 - NLP-0.1-7/NLP/MD5 | 62 ++++--- NLP-0.1-7/NLP/NAMESPACE | 92 +++++++++-- NLP-0.1-7/NLP/R/annotate.R | 17 -- NLP-0.1-7/NLP/R/annotation.R | 100 +++++++----- NLP-0.1-7/NLP/R/annotators.R | 149 ++++++++++++++---- NLP-0.1-7/NLP/R/aptd.R | 78 +++++++-- NLP-0.1-7/NLP/R/conll.R | 55 +++++- NLP-0.1-7/NLP/R/ngram.R |only NLP-0.1-7/NLP/R/span.R | 4 NLP-0.1-7/NLP/R/string.R | 8 NLP-0.1-7/NLP/R/sysdata.rda |binary NLP-0.1-7/NLP/R/tnt.R |only NLP-0.1-7/NLP/R/tokenize.R | 196 +++++++++++++++++++++--- NLP-0.1-7/NLP/R/tree.R | 12 - NLP-0.1-7/NLP/R/ttd.R |only NLP-0.1-7/NLP/R/utils.R |only NLP-0.1-7/NLP/R/viewers.R | 13 + NLP-0.1-7/NLP/R/wordlist.R | 35 +++- NLP-0.1-7/NLP/inst/texts/stanford.rds |binary NLP-0.1-7/NLP/man/AnnotatedPlainTextDocument.Rd | 30 ++- NLP-0.1-7/NLP/man/Annotation.Rd | 23 +- NLP-0.1-7/NLP/man/Annotator.Rd | 41 +++-- NLP-0.1-7/NLP/man/CoNLLTextDocument.Rd | 9 + NLP-0.1-7/NLP/man/Span.Rd | 5 NLP-0.1-7/NLP/man/TaggedTextDocument.Rd | 16 + NLP-0.1-7/NLP/man/Tagged_Token.Rd |only NLP-0.1-7/NLP/man/Tokenizer.Rd |only NLP-0.1-7/NLP/man/Tree.Rd | 2 NLP-0.1-7/NLP/man/annotate.Rd | 9 - NLP-0.1-7/NLP/man/annotators.Rd | 21 +- NLP-0.1-7/NLP/man/ngrams.Rd |only NLP-0.1-7/NLP/man/tagsets.Rd | 46 +++++ NLP-0.1-7/NLP/man/tokenizers.Rd | 17 +- NLP-0.1-7/NLP/man/viewers.Rd | 14 + 36 files changed, 817 insertions(+), 247 deletions(-)
Title: Estimation and Comparison of Dynamic Treatment Regimes
Description: Estimation and comparison of survival distributions of dynamic treatment regimes (DTRs) from sequentially randomized clinical trials.
Author: Xinyu Tang [aut, cre],
Maria Melguizo [aut]
Maintainer: Xinyu Tang <xtang@uams.edu>
Diff between DTR versions 1.5 dated 2014-07-09 and 1.6 dated 2015-05-06
DESCRIPTION | 15 ++++++++------- MD5 | 13 +++++++------ NAMESPACE | 11 +++++++++++ R/plot.CHR.R | 1 + R/plot.DTR.R | 1 + inst/CITATION |only inst/NEWS.Rd | 6 ++++++ man/DTR-package.Rd | 5 +++-- 8 files changed, 37 insertions(+), 15 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, and Luca Scrucca.
Maintainer: Max Kuhn <Max.Kuhn@pfizer.com>
Diff between caret versions 6.0-41 dated 2015-01-03 and 6.0-47 dated 2015-05-06
DESCRIPTION | 14 - MD5 | 112 +++++++------ NAMESPACE | 18 ++ R/aaa.R | 90 ++++++---- R/adaptive.R | 21 -- R/avNNet.R | 5 R/bag.R | 28 +-- R/bagFDA.R | 10 - R/calibration.R | 175 ++++++++++---------- R/confusionMatrix.R | 24 ++ R/createDataPartition.R | 69 ++++---- R/createFolds.R | 86 ++++------ R/createTimeSlices.R | 12 + R/extractPrediction.R | 11 - R/extractProb.R | 50 ++--- R/filterVarImp.R | 6 R/format.bagEarth.R | 2 R/gafs.R | 8 R/icr.R | 5 R/knn3.R | 7 R/knnreg.R | 5 R/lift.R | 287 ++++++++++++++++------------------ R/maxDissim.R | 2 R/misc.R | 28 +++ R/pcaNNet.R | 16 - R/plsda.R | 3 R/preProcess.R | 10 - R/print.varImp.train.R | 2 R/reg_sims.R | 2 R/resamples.R | 13 - R/rfe.R | 32 ++- R/safs.R | 8 R/selectByFilter.R | 16 - R/train.default.R | 153 +++++++++--------- R/trainControl.R | 2 R/trim.R |only R/twoClassSim.R | 2 R/varImp.R | 2 R/workflows.R | 44 ++--- build/vignette.rds |binary inst/NEWS.Rd | 38 ++++ inst/doc/caret.pdf |binary inst/models/models.RData |binary man/calibration.Rd | 2 man/confusionMatrix.Rd | 4 man/createDataPartition.Rd | 8 man/dummyVars.Rd | 7 man/lift.Rd | 6 man/models.Rd | 40 ++++ man/postResample.Rd | 24 ++ man/rf_seq.Rd |only man/selection.Rd | 10 - man/trainControl.Rd | 5 tests/testthat/test_confusionMatrix.R |only tests/testthat/test_mnLogLoss.R |only tests/testthat/trim.R |only tests/testthat/trim_C5.R |only tests/testthat/trim_bayesglm.R |only tests/testthat/trim_glm.R |only tests/testthat/trim_glmnet.R |only tests/testthat/trim_rpart.R |only tests/testthat/trim_train.R |only tests/testthat/trim_treebag.R |only 63 files changed, 851 insertions(+), 673 deletions(-)
Title: Graphical User Interface for Package 'sdcMicro'
Description: A point and click graphical user interface based on top of the
'sdcMicro' package to create anonymized data set. The graphical user
interface provides full reproducibility of any result via the script menu
in the GUI.
Author: Alexander Kowarik, Matthias Templ, Bernhard Meindl, Francois Fonteneau
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between sdcMicroGUI versions 1.1.1 dated 2013-11-08 and 1.2.0 dated 2015-05-06
DESCRIPTION | 25 MD5 | 41 NAMESPACE | 4 NEWS | 5 R/aux_functions.R | 2 R/plot.indivRisk.r | 284 R/sdcGUI.r | 8288 ++++++++++++++--------------- README.md | 2 build/vignette.rds |binary inst/doc/gui_tutorial.R |only inst/doc/gui_tutorial.pdf |binary inst/doc/gui_tutorial.rnw | 1151 ++-- vignettes/gui_tutorial.rnw | 1151 ++-- vignettes/imgs/gui_age_original.png |binary vignettes/imgs/gui_age_recoded.png |binary vignettes/imgs/gui_frequencies.png |binary vignettes/imgs/gui_localsupp_threshold.png |binary vignettes/imgs/gui_tab1.png |binary vignettes/imgs/gui_tab2.png |binary vignettes/imgs/gui_tab3.png |binary vignettes/imgs/gui_variable_selection.png |binary vignettes/references.bib | 68 22 files changed, 5600 insertions(+), 5421 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Ashley Manton [ctb],
Brian Diggs [ctb],
Cassio Pereira [ctb],
David Robinson [ctb],
Donald Arseneau [ctb, cph] (the framed package at inst/misc/framed.sty),
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jeff Arnold [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Michael Friendly [ctb],
Michel Kuhlmann [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Noam Ross [ctb],
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Scott Kostyshak [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.10 dated 2015-04-23 and 1.10.5 dated 2015-05-06
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- R/block.R | 4 ++++ R/highlight.R | 7 ++++--- R/hooks-latex.R | 8 ++++---- R/output.R | 2 +- R/params.R | 30 +++++++++++++++++++++++++++++- R/spin.R | 4 ++-- R/table.R | 2 ++ R/utils-base64.R | 6 +++--- R/utils-vignettes.R | 12 +++++++++--- R/utils.R | 5 +++-- README.md | 5 +++-- build/knitr.pdf |binary inst/doc/knit_expand.html | 4 ++-- inst/doc/knit_print.html | 4 ++-- inst/doc/knitr-intro.html | 10 +++++----- inst/doc/knitr-markdown.html | 2 +- inst/doc/knitr-refcard.pdf |binary man/image_uri.Rd | 6 +++--- man/spin.Rd | 4 ++-- tests/testit/test-params.R | 22 +++++++++++++++++++++- 22 files changed, 125 insertions(+), 62 deletions(-)
More information about SpatialPosition at CRAN
Permanent link
Title: Analysis of Quaternary Science Data
Description: Functions for the analysis of Quaternary science data, including
constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer
functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins <Stephen.Juggins@ncl.ac.uk>
Diff between rioja versions 0.9-3 dated 2014-12-17 and 0.9-5 dated 2015-05-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 9 +++++---- R/WA.r | 26 ++++++++++++++++---------- data/aber.rda |binary inst/CITATION | 6 +++--- inst/ChangeLog | 5 +++++ man/IK.Rd | 2 +- man/aber.Rd | 4 ++-- man/rioja.package.Rd | 4 ++-- 10 files changed, 47 insertions(+), 35 deletions(-)
Title: Fast Calculation of the Likelihood of a Stochastic Survival
Model
Description: Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood.
Author: Carlo Albert <carlo.albert@eawag.ch> and Sören Vogel <soeren.vogel@posteo.ch>
Maintainer: Sören Vogel <soeren.vogel@posteo.ch>
Diff between GUTS versions 0.5.2 dated 2015-04-12 and 0.9.1 dated 2015-05-06
GUTS-0.5.2/GUTS/R/zzz.R |only GUTS-0.5.2/GUTS/data/diazinon.RData |only GUTS-0.5.2/GUTS/man/Rcpp_GUTS-class.Rd |only GUTS-0.5.2/GUTS/src/GUTS_Rcpp.cpp |only GUTS-0.5.2/GUTS/src/GUTS_Rcpp.h |only GUTS-0.9.1/GUTS/DESCRIPTION | 18 - GUTS-0.9.1/GUTS/MD5 | 19 - GUTS-0.9.1/GUTS/NAMESPACE | 14 GUTS-0.9.1/GUTS/R/GUTS.R | 429 +++++++++++++++++++----- GUTS-0.9.1/GUTS/R/RcppExports.R |only GUTS-0.9.1/GUTS/data/diazinon.rda |only GUTS-0.9.1/GUTS/man/GUTS-package.Rd |only GUTS-0.9.1/GUTS/man/GUTS.Rd |only GUTS-0.9.1/GUTS/man/diazinon.Rd | 8 GUTS-0.9.1/GUTS/src/RcppExports.cpp |only GUTS-0.9.1/GUTS/src/guts_calc_loglikelihood.cpp |only 16 files changed, 372 insertions(+), 116 deletions(-)
Title: Descriptive Statistics
Description: Weighted frequency and contingency tables of categorical
variables and of the comparison of the mean value of a numerical
variable by the levels of a factor, and methods to produce xtable
objects of the tables and to plot them. There are also functions to
facilitate the character encoding conversion of objects, to quickly
convert fixed width files into csv ones, and to export a data.frame to
a text file with the necessary R and SPSS codes to reread the data.
Author: Jakson Aquino. Includes R source code and/or documentation
written by Dirk Enzmann, Marc Schwartz, Nitin Jain, and Stefan
Kraft
Maintainer: Jakson Aquino <jalvesaq@gmail.com>
Diff between descr versions 1.1 dated 2015-04-14 and 1.1.1 dated 2015-05-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 6 ++++++ R/forODFTable.R | 4 ++-- R/xtable.R | 3 +-- man/compmeans.Rd | 2 -- man/crosstab.Rd | 3 +-- man/freq.Rd | 4 ++-- 8 files changed, 23 insertions(+), 21 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like 'dplyr', 'tidyr' and 'ggplot2'. The package provides three S3
generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance,
which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between broom versions 0.3.6 dated 2015-02-18 and 0.3.7 dated 2015-05-06
DESCRIPTION | 19 +++-- LICENSE | 2 MD5 | 153 ++++++++++++++++++++++++------------------ NAMESPACE | 21 +++++ R/anova_tidiers.R | 15 ++-- R/biglm_tidiers.R |only R/broom.R |only R/globals.R | 2 R/list_tidiers.R |only R/lm_tidiers.R | 101 +++++++++++++++++++++------ R/lmtest_tidiers.R |only R/loess_tidiers.R |only R/multinom_tidiers.R |only R/nlme_tidiers.R |only R/optim_tidiers.R |only R/plm_tidiers.R |only R/stats_tidiers.R | 26 +++++++ R/summary_tidiers.R |only R/survival_tidiers.R | 6 - R/utilities.R | 14 ++- build/vignette.rds |binary inst/doc/bootstrapping.html | 10 +- inst/doc/broom_and_dplyr.html | 4 - inst/doc/kmeans.R | 2 inst/doc/kmeans.html | 8 +- man/Arima_tidiers.Rd | 2 man/aareg_tidiers.Rd | 4 - man/anova_tidiers.Rd | 2 man/augment.Rd | 2 man/augment_columns.Rd | 2 man/biglm_tidiers.Rd |only man/bootstrap.Rd | 2 man/broom.Rd |only man/cch_tidiers.Rd | 2 man/compact.Rd | 2 man/confint_tidy.Rd | 2 man/coxph_tidiers.Rd | 2 man/cv.glmnet_tidiers.Rd | 2 man/data.frame_tidiers.Rd | 2 man/felm_tidiers.Rd | 2 man/finish_glance.Rd | 4 - man/fix_data_frame.Rd | 2 man/gam_tidiers.Rd | 2 man/glance.Rd | 2 man/glm_tidiers.Rd | 2 man/glmnet_tidiers.Rd | 2 man/htest_tidiers.Rd | 2 man/inflate.Rd | 2 man/insert_NAs.Rd | 2 man/kmeans_tidiers.Rd | 2 man/list_tidiers.Rd |only man/lm_tidiers.Rd | 18 ++++ man/lme4_tidiers.Rd | 2 man/loess_tidiers.Rd |only man/matrix_tidiers.Rd | 2 man/multcomp_tidiers.Rd | 2 man/multinom_tidiers.Rd |only man/nlme_tidiers.Rd |only man/nls_tidiers.Rd | 2 man/optim_tidiers.Rd |only man/plm_tidiers.Rd |only man/process_lm.Rd |only man/pyears_tidiers.Rd | 2 man/ridgelm_tidiers.Rd | 2 man/rlm_tidiers.Rd | 2 man/rowwise_df_tidiers.Rd | 2 man/sexpfit_tidiers.Rd | 2 man/smooth.spline_tidiers.Rd | 2 man/sp_tidiers.Rd | 2 man/summary_tidiers.Rd |only man/survfit_tidiers.Rd | 2 man/survreg_tidiers.Rd | 2 man/tidy.NULL.Rd | 2 man/tidy.Rd | 2 man/tidy.TukeyHSD.Rd | 2 man/tidy.coeftest.Rd |only man/tidy.default.Rd | 2 man/tidy.density.Rd | 2 man/tidy.ftable.Rd | 2 man/tidy.manova.Rd | 2 man/tidy.map.Rd | 2 man/tidy.pairwise.htest.Rd | 2 man/tidy.power.htest.Rd |only man/tidy.spec.Rd | 2 man/tidy.table.Rd | 2 man/tidy.ts.Rd | 2 man/unrowname.Rd | 2 man/zoo_tidiers.Rd | 2 tests/testthat/test-nlme.R |only 89 files changed, 326 insertions(+), 179 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Description: Nested block designs for unstructured treatment sets where blocks
can be repeatedly nested and treatments can have different levels of
replication. Blocks are optimized hierarchically from the top down with each set of
nested blocks optimized within the levels of any existing higher-level blocks.
Block sizes are equal if the number of blocks exactly divides the number of plots,
otherwise they differ by at most one plot. The design output is a data
table giving a randomised allocation of treatments to blocks together with
a plan table showing treatments in blocks and a set of blocks-by-treatments
incidence matrices, one for each blocks stratum.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 1.5 dated 2015-03-08 and 1.6 dated 2015-05-06
DESCRIPTION | 12 +- MD5 | 18 +-- NAMESPACE | 2 R/blocks.r | 212 ++++++++++++++++++++++++-------------------- R/upper_bounds.r | 4 build/vignette.rds |binary man/blocks.Rd | 94 +++++++------------ man/blocksdesign-package.Rd | 2 man/efficiencies.Rd | 2 man/upper_bounds.Rd | 2 10 files changed, 173 insertions(+), 175 deletions(-)
Title: Bayesian Cost Effectiveness Analysis
Description: Produces an economic evaluation of a Bayesian model in the form of MCMC simulations. Given suitable variables of cost and effectiveness / utility for two or more interventions, This package computes the most cost-effective alternative and produces graphical summaries and probabilistic sensitivity analysis.
Author: Gianluca Baio, Andrea Berardi, Anna Heath
Maintainer: Gianluca Baio <gianluca@stats.ucl.ac.uk>
Diff between BCEA versions 2.1-0 dated 2015-01-13 and 2.1-1 dated 2015-05-06
BCEA-2.1-0/BCEA/man/multi.evppi.Rd |only BCEA-2.1-1/BCEA/DESCRIPTION | 15 BCEA-2.1-1/BCEA/MD5 | 67 +- BCEA-2.1-1/BCEA/NAMESPACE | 11 BCEA-2.1-1/BCEA/R/bcea.R | 749 +++++++++++++-------------------- BCEA-2.1-1/BCEA/data/Smoking.RData |binary BCEA-2.1-1/BCEA/data/Vaccine.RData |binary BCEA-2.1-1/BCEA/man/BCEA-package.Rd | 21 BCEA-2.1-1/BCEA/man/CEriskav.Rd | 47 +- BCEA-2.1-1/BCEA/man/CreateInputs.Rd | 9 BCEA-2.1-1/BCEA/man/Smoking.Rd | 52 +- BCEA-2.1-1/BCEA/man/Vaccine.Rd | 60 +- BCEA-2.1-1/BCEA/man/bcea.Rd | 45 + BCEA-2.1-1/BCEA/man/ceac.plot.Rd | 35 + BCEA-2.1-1/BCEA/man/ceaf.plot.Rd | 10 BCEA-2.1-1/BCEA/man/ceef.plot.Rd | 81 ++- BCEA-2.1-1/BCEA/man/ceplane.plot.Rd | 50 +- BCEA-2.1-1/BCEA/man/contour.bcea.Rd | 43 + BCEA-2.1-1/BCEA/man/contour2.Rd | 35 + BCEA-2.1-1/BCEA/man/diag.evppi.Rd | 66 ++ BCEA-2.1-1/BCEA/man/eib.plot.Rd | 52 +- BCEA-2.1-1/BCEA/man/evi.plot.Rd | 15 BCEA-2.1-1/BCEA/man/evppi.Rd | 101 ++-- BCEA-2.1-1/BCEA/man/ib.plot.Rd | 23 - BCEA-2.1-1/BCEA/man/mce.plot.Rd | 19 BCEA-2.1-1/BCEA/man/mixedAn.Rd | 55 +- BCEA-2.1-1/BCEA/man/multi.ce.Rd | 9 BCEA-2.1-1/BCEA/man/plot.CEriskav.Rd | 30 + BCEA-2.1-1/BCEA/man/plot.bcea.Rd | 41 + BCEA-2.1-1/BCEA/man/plot.evppi.Rd | 21 BCEA-2.1-1/BCEA/man/plot.mixedAn.Rd | 28 - BCEA-2.1-1/BCEA/man/sim.table.Rd | 13 BCEA-2.1-1/BCEA/man/struct.psa.Rd | 33 - BCEA-2.1-1/BCEA/man/summary.bcea.Rd | 12 BCEA-2.1-1/BCEA/man/summary.mixedAn.Rd | 17 35 files changed, 1082 insertions(+), 783 deletions(-)
Title: Tests for Type I Error in Qualitative Comparative Analysis (QCA)
Description: Implements tests for Type I error in Qualitative Comparative Analysis (QCA) that take into account the multiple hypothesis tests inherent in the procedure. Tests can be carried out on three variants of QCA: crisp-set QCA (csQCA), multi-value QCA (mvQCA) and fuzzy-set QCA (fsQCA). For fsQCA, the fsQCApermTest() command implements a permutation test that provides 95% confidence intervals for the number of counterexamples and degree of consistency, respectively. The distributions of permuted values can be plotted against the observed values. For csQCA and mvQCA, simple binomial tests are implemented in csQCAbinTest() and mvQCAbinTest(), respectively.
Author: Bear Braumoeller <braumoeller.1@osu.edu>
Maintainer: Bear Braumoeller <braumoeller.1@osu.edu>
Diff between QCAfalsePositive versions 0.11 dated 2015-05-03 and 1.0 dated 2015-05-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/fsQCApermTest.R | 21 ++++++++++++++++++++- R/plot.fsQCApt.R | 19 ++++++++++++++----- 4 files changed, 40 insertions(+), 12 deletions(-)
More information about QCAfalsePositive at CRAN
Permanent link
Title: Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Description: Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between wgaim versions 1.4-7 dated 2015-05-04 and 1.4-8 dated 2015-05-06
DESCRIPTION | 8 +++--- MD5 | 6 ++-- R/wgaim9.R | 70 +++++++++++++++++++++++++++-------------------------- inst/doc/wgaim.pdf |binary 4 files changed, 43 insertions(+), 41 deletions(-)